Citrus Sinensis ID: 026547

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF
Secondary Structure (PSIPRED)
ccHHHHcccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEccHHcHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHccHHEEEEccccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEcccccccEccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHcc
Coil and Loop (DISEMBL)
MAEKAKKAASSKGLLQSEELYRYILEtsvyprepehlkeirdvtadhprammstapDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTaltipedgqimAIDVNRETYEIGLPVikkagvdhkinFIESEALSVLDQLLKdsenegsfdyafvdadkvNYWNYHERLMKLLKVGGiavydntlwggtvamseeqvpdhlrggrQATLDLnrsladdpriqlshvplgdgiticwrif
Flexible Loop (DISEMBL)
maekakkaasskgllqseELYRYILETsvyprepehlKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSladdpriqlshvplgdgiticWRIF
Low Complexity Region (SEG)
MaekakkaasskGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF
Disordered region (IsUnstruct)
******************ELYRYILETSVYP***************************GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM**************************PRIQLSHVPLGDGITICWRI*
Disordered Region (DISOPRED)
******************ELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF
Disordered Region (DISEMBL)
************GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF
Disordered Region (DISPRO)
*************LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.957	0.978	0.691	7e-93
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.949	0.933	0.6	4e-80
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.949	0.910	0.619	6e-79
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.949	0.910	0.623	7e-79
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.949	0.910	0.623	9e-79
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.949	0.885	0.592	2e-78
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.995	0.983	0.594	3e-78
O65922	247	Caffeoyl-CoA O-methyltran	no	no	0.949	0.910	0.606	6e-78
O49499	259	Caffeoyl-CoA O-methyltran	no	no	0.949	0.868	0.606	6e-78
Q8H9B6	242	Caffeoyl-CoA O-methyltran	N/A	no	0.949	0.929	0.601	2e-77

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  340 bits (871), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 197/227 (86%)

Query: 11  SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVN 70
           +KGLL+SEELY+YILETSVYPREPE L+E+R++T +HP+A M+TAPDAGQLM MLL LVN
Sbjct: 6   AKGLLKSEELYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVN 65

Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE 130
           A+KTIE+GVFTGYSLLLTALT+PEDG+++AID+NR++YEIGLPVIKKAGV+HKI+F ESE
Sbjct: 66  ARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESE 125

Query: 131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM 190
           AL  LD+LL +  NEG FD+AFVDADK+NYWNYHERL++L+KVGGI VYDNTLWGG+VA 
Sbjct: 126 ALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAE 185

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
            +   P+     ++ATL+LN+ L+ D R+Q+S   LGDGITIC R++
Sbjct: 186 PDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score =  297 bits (761), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 177/225 (78%)

Query: 13  GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
           GLLQSE+L++YIL+TSV+PRE EHLKE+R  T  HP + M T+P AGQL++ +LK V  K
Sbjct: 17  GLLQSEQLHQYILDTSVFPRESEHLKELRKATESHPMSFMGTSPLAGQLLSFMLKTVKPK 76

Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
           KTIE+GVFTGYSLL TAL+IP+DG+I A+D++RE Y +GL +IKKAGV+ KI+FI S+A+
Sbjct: 77  KTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNVGLALIKKAGVESKISFIVSDAM 136

Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSE 192
           ++LD LL D   +GS+D+AFVDADK NY NYHERL++L+KVGGI  YDNTLWGGTVA+ E
Sbjct: 137 TLLDDLLADGRYQGSYDFAFVDADKTNYVNYHERLIELVKVGGIIAYDNTLWGGTVALPE 196

Query: 193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
            +VPD ++        LN  L  D RI ++H+P+GDGIT C R++
Sbjct: 197 SEVPDFMKNNWVCVTKLNEILGSDARIDIAHLPVGDGITFCRRVY 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  293 bits (751), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 183/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ LY+YILETSV+PRE E +KE+R+VTA HP  +M+T+ D GQ ++MLLKL+NA
Sbjct: 21  KSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINA 80

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGV+TGYSLL TAL IPEDG+I+A+D+N+E YE+GLPVIKKAGVDHKI+F E  A
Sbjct: 81  KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 140

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAM 190
           L VLD+++KD +N GS+D+ FVDADK NY NYH+RL+ L+KVGG+  YDNTLW G+ VA 
Sbjct: 141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAP 200

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
            +  +  ++R  R   L+LN++LA DPRI++  +P+GDGITIC RI
Sbjct: 201 PDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  293 bits (750), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 141/226 (62%), Positives = 182/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ LY+YILETSVYPREPE +KE+R+VTA HP  +M+T+ D GQ + MLLKLVNA
Sbjct: 21  KSLLQSDALYQYILETSVYPREPECMKELREVTAKHPWNIMTTSADEGQFLNMLLKLVNA 80

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGV+TGYSLL TAL IPEDG+I+A+D+NRE YE+GLPVI+KAGV HKI+F E  A
Sbjct: 81  KNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFKEGPA 140

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAM 190
           L VLDQ+++D +  GSFD+ FVDADK NY NYH+RL++L+KVGG+  YDNTLW G+ VA 
Sbjct: 141 LPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTLWNGSVVAP 200

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
            +  +  ++R  R   L+LN++LA DPRI++  +P+GDGIT+C RI
Sbjct: 201 PDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  293 bits (749), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 141/226 (62%), Positives = 182/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ LY+YILETSVYPREPE +KE+R+VTA HP  +M+T+ D GQ + MLLKLVNA
Sbjct: 21  KSLLQSDALYQYILETSVYPREPECMKELREVTAKHPWNIMTTSADEGQFLNMLLKLVNA 80

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGV+TGYSLL TAL IPEDG+I+A+D+NRE YE+GLPVI+KAGV HKI+F E  A
Sbjct: 81  KNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFKEGPA 140

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAM 190
           L VLDQ+++D +  GSFD+ FVDADK NY NYH+RL++L+KVGG+  YDNTLW G+ VA 
Sbjct: 141 LPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTLWNGSVVAP 200

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
            +  +  ++R  R   L+LN++LA DPRI++  +P+GDGIT+C RI
Sbjct: 201 PDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 183/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ L++YILETSVYPREPE +KE+RD+TA HP  +M+T+ D GQ + MLLKL+NA
Sbjct: 28  KSLLQSDALFQYILETSVYPREPEPMKELRDITAKHPWNLMTTSADEGQFLNMLLKLINA 87

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K TIEIGV+TGYSLL +AL +P+DG+I+A+D+NRE YE+GLPVI+KAGV HKI+F E  A
Sbjct: 88  KNTIEIGVYTGYSLLASALALPDDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 147

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM- 190
           L VLD L++D++N GSFD+AFVDADK NY NYH+RL+ L+K+GG+  YDNTLW G+VA  
Sbjct: 148 LPVLDLLIEDAKNHGSFDFAFVDADKDNYGNYHKRLIDLVKIGGVIGYDNTLWNGSVAAP 207

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           ++  +  ++R  R   ++ N+++A DPR+++  +P+GDGIT+C RI
Sbjct: 208 ADAPMRKYVRYYRDFVMEFNKAIAADPRVEICQLPVGDGITLCRRI 253

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 142/239 (59%), Positives = 185/239 (77%), Gaps = 3/239 (1%)

Query: 1   MAEKAKK--AASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDA 58
           MAE   K      K LLQS+ LY+YILETSVYPREPE +KE+R+VTA HP  +M+T+ D 
Sbjct: 1   MAENGIKHQEVGHKSLLQSDALYQYILETSVYPREPESMKELREVTAKHPWNLMTTSADE 60

Query: 59  GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA 118
           GQ + MLLKL+NAK T+EIGV+TGYSLL TAL IP+DG+I+A+D+NRE YEIGLP+I+KA
Sbjct: 61  GQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEIGLPIIEKA 120

Query: 119 GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV 178
           GV HKI F E  AL VLDQL++D +N G++D+ FVDADK NY NYH+R++ L+KVGG+  
Sbjct: 121 GVAHKIEFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDLVKVGGLIG 180

Query: 179 YDNTLWGGT-VAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           YDNTLW G+ VA  +  +  ++R  R   L+LN++LA DPRI++  +P+GDGIT+C RI
Sbjct: 181 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65922|CAMT2_POPTR Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa GN=CCOAOMT2 PE=2 SV=1

 Score =  290 bits (742), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 183/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ LY+YILETSVYPREPE +KE+R++TA HP  +M+T+ D GQ + MLLKL+NA
Sbjct: 21  KSLLQSDALYQYILETSVYPREPECMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINA 80

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGVFTGYSLL TAL IPEDG+I+A+D+NRE YE+GLPVI+KAG++HKI F E  A
Sbjct: 81  KNTMEIGVFTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKAGLEHKIEFKEGPA 140

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAM 190
           L VLDQ+++D +  G++D+ FVDADK NY NYH+RL++L+KVGG+  YDNTLW G+ VA 
Sbjct: 141 LPVLDQMIEDGKYHGTYDFIFVDADKDNYINYHKRLIELVKVGGLIGYDNTLWNGSVVAP 200

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           ++  +  ++R  R   L+LN++LA DPRI++  +P+GDGIT+C RI
Sbjct: 201 ADAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O49499|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1 OS=Arabidopsis thaliana GN=CCOAOMT1 PE=1 SV=1

 Score =  290 bits (742), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 182/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS++LY+YILETSVYPREPE +KE+R+VTA HP  +M+T+ D GQ + ML+KLVNA
Sbjct: 33  KSLLQSDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLIKLVNA 92

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGV+TGYSLL TAL +PEDG+I+A+DVNRE YE+GLP+I+KAGV HKI+F E  A
Sbjct: 93  KNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKAGVAHKIDFREGPA 152

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAM 190
           L VLD+++ D +N G++D+ FVDADK NY NYH+RL+ L+K+GG+  YDNTLW G+ VA 
Sbjct: 153 LPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAP 212

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
            +  +  ++R  R   L+LN++LA DPRI++  +P+GDGITIC RI
Sbjct: 213 PDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q8H9B6|CAMT_SOLTU Caffeoyl-CoA O-methyltransferase OS=Solanum tuberosum GN=CCOAOMT PE=2 SV=1

 Score =  288 bits (738), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 181/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ LY+YILETSVYPREPE +KE+R++TA HP  +M+T+ D GQ + MLLKL+NA
Sbjct: 16  KSLLQSDALYQYILETSVYPREPEAMKELREITAKHPWNLMTTSADEGQFLNMLLKLINA 75

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGVFTGYSLL TA+ +P+DG+I+A+D+NRE YEIGLPVI+KAG+ HKI+F E  A
Sbjct: 76  KNTMEIGVFTGYSLLATAMALPDDGKILAMDINRENYEIGLPVIEKAGLAHKIDFREGPA 135

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAM 190
           L VLDQ+++D +  GS+D+ FVDADK NY NYH+RL+ L+KVGG+  YDNTLW G+ VA 
Sbjct: 136 LPVLDQMIEDGKYHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGLIGYDNTLWNGSVVAP 195

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
            +  +  ++R  R   L+LN++LA DPRI++  +P+GDGIT+C RI
Sbjct: 196 PDAPLRKYVRYYRDFVLELNKALAADPRIEICQLPVGDGITLCRRI 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Solanum tuberosum (taxid: 4113)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224122628	236	predicted protein [Populus trichocarpa]	0.983	0.987	0.764	1e-103
255546215	228	o-methyltransferase, putative [Ricinus c	0.957	0.995	0.753	1e-100
297738705	236	unnamed protein product [Vitis vinifera]	0.987	0.991	0.743	1e-98
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.987	0.829	0.743	2e-98
255546213	228	o-methyltransferase, putative [Ricinus c	0.949	0.986	0.724	3e-96
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.995	0.145	0.709	3e-94
297803474	238	hypothetical protein ARALYDRAFT_913940 [	0.991	0.987	0.697	3e-94
297738706	295	unnamed protein product [Vitis vinifera]	0.995	0.8	0.713	6e-94
225444997	242	PREDICTED: probable caffeoyl-CoA O-methy	1.0	0.979	0.698	5e-93
147840665	285	hypothetical protein VITISV_007881 [Viti	1.0	0.831	0.698	8e-93

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/234 (76%), Positives = 209/234 (89%), Gaps = 1/234 (0%)

Query: 5   AKKAAS-SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMA 63
           +KKA S SKGLLQSEELY+Y+LETSVYPRE E L+E+R +TA HPRAMM+TAPDAGQLMA
Sbjct: 3   SKKAISFSKGLLQSEELYQYVLETSVYPRELEPLRELRMLTATHPRAMMATAPDAGQLMA 62

Query: 64  MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK 123
           MLLKLVNA+KTIE+GVFTGYSLLLTAL+IP+DG+I AIDVNRE YEIGLP+I+ AGV+HK
Sbjct: 63  MLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAIDVNREAYEIGLPIIRNAGVEHK 122

Query: 124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL 183
           INFIESEA  +LD+LL+D  NEGSFD+AFVDADKVNYWNYHERLMKLLKVGGI VYDNTL
Sbjct: 123 INFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLMKLLKVGGIVVYDNTL 182

Query: 184 WGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
           WGGTVA+SEE  P++++ GRQ T++ N+ LA D R+Q+SH P GDGITIC RI+
Sbjct: 183 WGGTVALSEESTPENMKAGRQLTIEFNKLLAADSRVQISHAPSGDGITICRRIY 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/227 (75%), Positives = 206/227 (90%)

Query: 11  SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVN 70
           SKGLL+SEELY+Y+LE SVYPRE E L+E+R++TA HPRA M+T+PDAGQL+A+LL+LVN
Sbjct: 2   SKGLLKSEELYQYVLEASVYPRETEPLRELRNITASHPRAGMATSPDAGQLIALLLQLVN 61

Query: 71  AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE 130
           AKKTIE+GVFTGYSLLLTAL+IPEDG+I AIDVNRETY+IGLP+I+KAGV+HKI+F+ESE
Sbjct: 62  AKKTIEVGVFTGYSLLLTALSIPEDGKITAIDVNRETYDIGLPIIRKAGVEHKIDFMESE 121

Query: 131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM 190
           AL VLD+LLKD  NEGSFD+AFVDADK+NYWNYHERL+KLLKVGGI VYDNTLWGGTVA+
Sbjct: 122 ALPVLDKLLKDHGNEGSFDFAFVDADKINYWNYHERLLKLLKVGGIVVYDNTLWGGTVAI 181

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
            EE+ P+ +R GRQ T++LN+ LA D RIQ+SH  LGDGITIC R++
Sbjct: 182 PEEEAPEAMRMGRQLTIELNKLLAADSRIQISHASLGDGITICRRLY 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 174/234 (74%), Positives = 206/234 (88%)

Query: 3   EKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLM 62
           E++ K   SKGLLQSEELY+Y+LETSVYPREPE LKE+RD+TA HP+A+M+TAPDAGQLM
Sbjct: 2   EQSGKKNPSKGLLQSEELYQYLLETSVYPREPEPLKELRDITATHPKAVMATAPDAGQLM 61

Query: 63  AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH 122
            MLL+LVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I AIDV+R+ YE+GLPVI+KAGV+H
Sbjct: 62  DMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKAGVEH 121

Query: 123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182
           KINFIES+AL VLD+LL++ ENEG FD+AFVDADKVNY NYHERLMKLLK+GGI VYDNT
Sbjct: 122 KINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVVYDNT 181

Query: 183 LWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           L GGTVAM EE V ++LR  R+ T++LN  LA DPR+Q+   PLGDGITIC R+
Sbjct: 182 LRGGTVAMPEELVAENLRENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/234 (74%), Positives = 206/234 (88%)

Query: 3   EKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLM 62
           E++ K   SKGLLQSEELY+Y+LETSVYPREPE LKE+RD+TA HP+A+M+TAPDAGQLM
Sbjct: 48  EQSGKKNPSKGLLQSEELYQYLLETSVYPREPEPLKELRDITATHPKAVMATAPDAGQLM 107

Query: 63  AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH 122
            MLL+LVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I AIDV+R+ YE+GLPVI+KAGV+H
Sbjct: 108 DMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKAGVEH 167

Query: 123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182
           KINFIES+AL VLD+LL++ ENEG FD+AFVDADKVNY NYHERLMKLLK+GGI VYDNT
Sbjct: 168 KINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVVYDNT 227

Query: 183 LWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           L GGTVAM EE V ++LR  R+ T++LN  LA DPR+Q+   PLGDGITIC R+
Sbjct: 228 LRGGTVAMPEELVAENLRENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 163/225 (72%), Positives = 202/225 (89%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           KGLL+SEELY+Y+LETSV+PREPE L+E+R++TA+HP A M+T+PDAGQ MAMLL+LVNA
Sbjct: 3   KGLLKSEELYQYVLETSVFPREPEPLRELRNITANHPWAKMATSPDAGQFMAMLLQLVNA 62

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           KKTIE+GVFTGYSLLLTAL+IPEDG+I+AIDV+RE YEIGLP+I+KAGV+HKI+F+ESEA
Sbjct: 63  KKTIEVGVFTGYSLLLTALSIPEDGKIVAIDVDREAYEIGLPIIRKAGVEHKIDFMESEA 122

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMS 191
           L VLD+LLK+  NE SFD+AFVDADK+NYWNYHERL+KL+KVGGI +YDN+LW G+VA+ 
Sbjct: 123 LPVLDKLLKEHGNESSFDFAFVDADKINYWNYHERLLKLVKVGGIVIYDNSLWRGSVAVP 182

Query: 192 EEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           EE+ P+HLR  RQ T++ N+ LA D R+Q+SH  LGDGITIC RI
Sbjct: 183 EEEAPEHLRFCRQLTIEHNKFLAADSRVQISHASLGDGITICRRI 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 173/244 (70%), Positives = 205/244 (84%), Gaps = 8/244 (3%)

Query: 1    MAEKAKKAASSKGLLQSEELYR--------YILETSVYPREPEHLKEIRDVTADHPRAMM 52
            + E + K   SKGLLQSEELY+        Y+LETSVYPREPE LKE+RD+TA HP+A+M
Sbjct: 1381 LEELSGKKNPSKGLLQSEELYQLKALKIWQYLLETSVYPREPEPLKELRDITATHPKAVM 1440

Query: 53   STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGL 112
            +TAPDAGQLM MLL+LVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I AIDV+R+ YE+GL
Sbjct: 1441 ATAPDAGQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGL 1500

Query: 113  PVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLK 172
            PVI+KAGV+HKINFIES+AL VLD+LL++ ENEG FD+AFVDADK NY NYHERLMKLLK
Sbjct: 1501 PVIRKAGVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKXNYKNYHERLMKLLK 1560

Query: 173  VGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITI 232
            +GGI VYDNTL GGTVAM EE V ++LR  R+ T++LN  LA DPR+Q+   PLGDGITI
Sbjct: 1561 MGGIVVYDNTLRGGTVAMPEELVAENLRENRRLTIELNNFLAADPRVQICLAPLGDGITI 1620

Query: 233  CWRI 236
            C R+
Sbjct: 1621 CRRV 1624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803474|ref|XP_002869621.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata] gi|297315457|gb|EFH45880.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 202/235 (85%)

Query: 3   EKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLM 62
           ++AK +  SKGLL+SEELY+YILETSVYPREPE LKE+R++T +HP+A M+TAPDAGQLM
Sbjct: 4   DEAKASDFSKGLLKSEELYKYILETSVYPREPEVLKELRNITHNHPQAGMATAPDAGQLM 63

Query: 63  AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH 122
            MLLKLVNA+KTIE+GVFTGYSLLLTALT+PEDG+++AIDVNR++YEIGLPVIKK GV+H
Sbjct: 64  GMLLKLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDVNRDSYEIGLPVIKKVGVEH 123

Query: 123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT 182
           KI+F ESEAL  LD+LL D  NEG FD+AFVDADKVNYWNYHERL++L+KVGGI VYDNT
Sbjct: 124 KIDFRESEALPALDELLNDKANEGGFDFAFVDADKVNYWNYHERLIRLIKVGGIIVYDNT 183

Query: 183 LWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
           LWGG+VA  +   P+     ++ATL+LN+ L+ D R+Q+S   LGDGITIC R++
Sbjct: 184 LWGGSVAEPDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738706|emb|CBI27951.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 169/237 (71%), Positives = 203/237 (85%), Gaps = 1/237 (0%)

Query: 1   MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQ 60
           M E AKK    KGLL++EELY+YILETSVYPREPE LKE+RD TA HPRA+++TAPDAGQ
Sbjct: 60  MGESAKKTTVYKGLLKNEELYQYILETSVYPREPEPLKELRDATAAHPRAIIATAPDAGQ 119

Query: 61  LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV 120
            + MLLKLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I+AIDV+R+ YEIGLP+I++AGV
Sbjct: 120 SIDMLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNYEIGLPIIRRAGV 179

Query: 121 DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+AL VLD+LL+D ENEGS D+AFVDADK NY NYHERLMKLLKVGG+ VYD
Sbjct: 180 EHKINFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLMKLLKVGGVVVYD 239

Query: 181 NTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
           NTLW GTVA+ E+ V + L+  R+  ++LN+ LA D R+Q+   PLGDGITIC RI+
Sbjct: 240 NTLWHGTVALPEDLV-EELKEMRKHIMELNKYLATDSRVQICVAPLGDGITICRRIY 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444997|ref|XP_002279936.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 169/242 (69%), Positives = 203/242 (83%), Gaps = 5/242 (2%)

Query: 1   MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQ 60
           M E AKK    KGLL++EELY+YILETSVYPREPE LKE+RD TA HPRA+++TAPDAGQ
Sbjct: 1   MGESAKKTTVYKGLLKNEELYQYILETSVYPREPEPLKELRDATAAHPRAIIATAPDAGQ 60

Query: 61  LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV 120
            + MLLKLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I+AIDV+R+ YEIGLP+I++AGV
Sbjct: 61  SIDMLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNYEIGLPIIRRAGV 120

Query: 121 DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+AL VLD+LL+D ENEGS D+AFVDADK NY NYHERLMKLLKVGG+ VYD
Sbjct: 121 EHKINFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLMKLLKVGGVVVYD 180

Query: 181 NTLWGGTVAMSEEQVPDHLRGG-----RQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
           NTLW GTVA+ E+ V + + G      R+  ++LN+ LA D R+Q+   PLGDGITIC R
Sbjct: 181 NTLWHGTVALPEDLVEELVDGEYKKEMRKHIMELNKYLATDSRVQICVAPLGDGITICRR 240

Query: 236 IF 237
           I+
Sbjct: 241 IY 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840665|emb|CAN62003.1| hypothetical protein VITISV_007881 [Vitis vinifera]

 Score =  345 bits (885), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 169/242 (69%), Positives = 203/242 (83%), Gaps = 5/242 (2%)

Query: 1   MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQ 60
           M E AKK    KGLL++EELY+YILETSVYPREPE LKE+RD TA HPRA+++TAPDAGQ
Sbjct: 44  MGESAKKTTVYKGLLKNEELYQYILETSVYPREPEPLKELRDATAAHPRAIIATAPDAGQ 103

Query: 61  LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV 120
            + MLLKLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+I+AIDV+R+ YEIGLP+I++AGV
Sbjct: 104 SIDMLLKLVNAKKTIEIGVFTGYSLLLTALSIPDDGKIIAIDVDRKNYEIGLPIIRRAGV 163

Query: 121 DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+AL VLD+LL+D ENEGS D+AFVDADK NY NYHERLMKLLKVGG+ VYD
Sbjct: 164 EHKINFIESQALPVLDKLLEDHENEGSLDFAFVDADKGNYKNYHERLMKLLKVGGVVVYD 223

Query: 181 NTLWGGTVAMSEEQVPDHLRGG-----RQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
           NTLW GTVA+ E+ V + + G      R+  ++LN+ LA D R+Q+   PLGDGITIC R
Sbjct: 224 NTLWHGTVALPEDLVEELVDGEYKKEMRKHIMELNKYLATDSRVQICVAPLGDGITICRR 283

Query: 236 IF 237
           I+
Sbjct: 284 IY 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.949	0.969	0.693	5.6e-84
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.940	0.861	0.607	1.8e-71
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.932	0.952	0.566	1.8e-64
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.940	0.763	0.526	9.7e-64
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.936	0.952	0.522	2.4e-60
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.940	0.884	0.524	7.3e-59
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.898	0.797	0.425	3.6e-41
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.873	0.723	0.413	1.1e-37
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.848	0.693	0.409	1e-36
UNIPROTKB|Q86VU5	262	COMTD1 "Catechol O-methyltrans	0.894	0.809	0.373	1.1e-32

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 156/225 (69%), Positives = 195/225 (86%)

Query:    13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
             GLL+SEELY+YILETSVYPREPE L+E+R++T +HP+A M+TAPDAGQLM MLL LVNA+
Sbjct:     8 GLLKSEELYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNAR 67

Query:    73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
             KTIE+GVFTGYSLLLTALT+PEDG+++AID+NR++YEIGLPVIKKAGV+HKI+F ESEAL
Sbjct:    68 KTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKIDFKESEAL 127

Query:   133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSE 192
               LD+LL +  NEG FD+AFVDADK+NYWNYHERL++L+KVGGI VYDNTLWGG+VA  +
Sbjct:   128 PALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLWGGSVAEPD 187

Query:   193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
                P+     ++ATL+LN+ L+ D R+Q+S   LGDGITIC R++
Sbjct:   188 SSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 136/224 (60%), Positives = 181/224 (80%)

Query:    14 LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
             LLQS++LY+YILETSVYPREPE +KE+R+VTA HP  +M+T+ D GQ + ML+KLVNAK 
Sbjct:    35 LLQSDDLYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLIKLVNAKN 94

Query:    74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
             T+EIGV+TGYSLL TAL +PEDG+I+A+DVNRE YE+GLP+I+KAGV HKI+F E  AL 
Sbjct:    95 TMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKAGVAHKIDFREGPALP 154

Query:   134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTV-AMSE 192
             VLD+++ D +N G++D+ FVDADK NY NYH+RL+ L+K+GG+  YDNTLW G+V A  +
Sbjct:   155 VLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAPPD 214

Query:   193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
               +  ++R  R   L+LN++LA DPRI++  +P+GDGITIC RI
Sbjct:   215 APMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 128/226 (56%), Positives = 167/226 (73%)

Query:    13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAM--MSTAPDAGQLMAMLLKLVN 70
             G+L+SE L +YI+ETS YPRE E LKE+R  T      +  M    D G  ++ML+K++N
Sbjct:     9 GILKSEALKQYIMETSAYPREHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMN 68

Query:    71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE 130
             AK TIEIGVFTGYSLL TAL +PEDG+I AID+++E YE+GL  IKKAGVDHKINFI S+
Sbjct:    69 AKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIHSD 128

Query:   131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM 190
              L  LDQL+ D   +  FD+AF DADK +Y N+HERL+KL+KVGGI  +DNTLW G VA 
Sbjct:   129 GLKALDQLVND---KCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAE 185

Query:   191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              E+ VP+H+R  R A ++ N+ LA DPR+++S + +GDGIT+C R+
Sbjct:   186 DEDGVPEHMREYRAALIEFNKKLALDPRVEVSQISIGDGITLCRRL 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 118/224 (52%), Positives = 169/224 (75%)

Query:    14 LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
             LL+SE L+ Y+L T VYPRE E ++E+R +T++H    MS+ P+ GQL+++LL L  AK 
Sbjct:    68 LLKSESLHEYMLNTMVYPRENEFMRELRLITSEHTYGFMSSPPEEGQLLSLLLNLTGAKN 127

Query:    74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
             TIE+GVFTG S+L TAL IP+DG+++AIDV+RE +++GLPVIKKAGV HK++F E  A+ 
Sbjct:   128 TIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLGLPVIKKAGVAHKVDFREGAAMP 187

Query:   134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEE 193
             +LD LL + ENEG FD+AFVDADK NY  YHERL++L++ GG+  YDNTLWGG+VA+ ++
Sbjct:   188 ILDNLLANEENEGKFDFAFVDADKGNYGEYHERLLRLVRAGGVLAYDNTLWGGSVALEDD 247

Query:   194 QVPDHL-RGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              V +   +  R++ +  N  +A DPR++   +P+ DGIT+C R+
Sbjct:   248 SVLEEFDQDIRRSIVAFNAKIAGDPRVEAVQLPVSDGITLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 118/226 (52%), Positives = 164/226 (72%)

Query:    13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAM--MSTAPDAGQLMAMLLKLVN 70
             G+L+SE L +YI+ET+ YPRE E LKE+R+ T      +  M    D    ++ML+K++N
Sbjct:     9 GILKSEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFLSMLVKIIN 68

Query:    71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE 130
             AK TIEIGVFTGYSL   AL +PEDG+I AID+++  Y +GL  +KKAGVDHKINFI+S+
Sbjct:    69 AKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVDHKINFIQSD 128

Query:   131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM 190
             A+  LDQLL   + E  +D+AFVDADK NY  + E+L+KL+KVGGI  +DNTLW GT+  
Sbjct:   129 AVRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDNTLWFGTLIQ 186

Query:   191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              E +VP H+R  R+A L+ N+ LA DPR++++ + +GDG+T+C R+
Sbjct:   187 KENEVPGHMRAYREALLEFNKILARDPRVEIAQISIGDGLTLCRRL 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 119/227 (52%), Positives = 163/227 (71%)

Query:    14 LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
             LL+S+ LY+Y+L+T+V PREPE ++++R +T  H    M ++ D  QL+ MLLK+  AK+
Sbjct:    25 LLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEAQLLGMLLKMAGAKR 84

Query:    74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
             TIE+GVFTGYSLL TAL +PEDG+++AID +RE+YEIG P ++KAGV HK++F E + L 
Sbjct:    85 TIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAGVAHKVDFREGKGLE 144

Query:   134 VLDQLLKDSE---NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM 190
              LD+LL +      E +FD+AFVDADK NY  YHE+L++L++VGG  VYDNTLW GTVA+
Sbjct:   145 KLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGHIVYDNTLWAGTVAL 204

Query:   191 SEEQ-VPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
               +  + D  R    A  DLN  LA DPRI +  + + DGITIC R+
Sbjct:   205 PPDTPLSDLDRRFSVAIRDLNSRLAADPRIDVCQLAIADGITICRRL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 94/221 (42%), Positives = 142/221 (64%)

Query:    16 QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTI 75
             +S  L++YIL+ S+  RE   LK++R +TA++P   M  + D  QLMA L+KL+ AKK I
Sbjct:    55 KSSPLWQYILDHSL--REHPILKKLRLLTAEYPWGKMMVSCDQAQLMANLIKLIKAKKVI 112

Query:    76 EIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135
             E+GV TGY+ L  AL +P++G+++A D+N +  +IG P+ K+AGVDHKI+     A   L
Sbjct:   113 EVGVLTGYNALSMALALPDNGRVIACDINEDYAKIGKPLWKEAGVDHKIDLRIKPATQTL 172

Query:   136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQV 195
             D+LL   E E +FD+AF+DADK +Y  Y+E+ ++L+K GGI   DN L  G V    +  
Sbjct:   173 DELLAGGEAE-TFDFAFIDADKESYNEYYEKCLRLIKKGGIIAIDNVLRCGMVLKPRK-- 229

Query:   196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              D L    Q+   LN  L  D R+ +S +P+GDG+T+ +++
Sbjct:   230 -DDL--ATQSIHHLNEKLVRDARVNISMIPMGDGVTLVFKL 267

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 89/215 (41%), Positives = 132/215 (61%)

Query:    18 EELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEI 77
             + L +Y++  S+  RE   L ++R  T +  R +M  A +  QLMA L KL+ A KTIEI
Sbjct:    76 DPLLQYVVNNSL--REHPVLTKLRLRTMEDARNVMMVASEQAQLMANLAKLIEANKTIEI 133

Query:    78 GVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ 137
             G++TGY+ L  AL +PE+G+++A ++N +  +IG P   +AGV++KI+     A+  LD+
Sbjct:   134 GLYTGYNALSLALVVPENGRVVACEINEDYVKIGKPFFAEAGVENKIDIRLKPAVETLDE 193

Query:   138 LLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPD 197
             LL   E  G +D+ F+DADK NY  Y+E+ ++L++ GGI   DN LWGG V    E   D
Sbjct:   194 LLSAGE-AGMYDFVFIDADKKNYETYYEKSLQLVRKGGIVAIDNVLWGGRVINPAE---D 249

Query:   198 HLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITI 232
              L    QA   LN+ L  D RI LS + +GDG+T+
Sbjct:   250 DLSS--QAIDKLNKKLHKDERIDLSMLTVGDGLTL 282

GO:0008171 "O-methyltransferase activity" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 88/215 (40%), Positives = 131/215 (60%)

Query:    20 LYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGV 79
             LY Y+L      RE E LK++R+ TA    + +  +PD  QL+AML++++ AK+ IE+GV
Sbjct:    86 LYDYVLNNV---REHEILKQLREETAI---SQIQVSPDQAQLLAMLVEILGAKRCIEVGV 139

Query:    80 FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139
             +TGYS L  AL +PE G+++A D +    E+     + AGV HK+      A   L  ++
Sbjct:   140 YTGYSSLAVALVLPESGRLVACDKDANALEVAKRYYELAGVSHKVTVKHGLAAESLMSMI 199

Query:   140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHL 199
             ++ E E S+D+AF+DADK  Y  Y E L++L++VGG+ V DN LW G VA  +  V D  
Sbjct:   200 QNGE-ESSYDFAFLDADKAMYQEYFESLLRLVRVGGVIVIDNVLWHGWVA--DSTVNDE- 255

Query:   200 RGGRQATL-DLNRSLADDPRIQLSHVPLGDGITIC 233
                R  +L + N+ L DD R+ +S V +GDG+TIC
Sbjct:   256 ---RTISLRNFNKKLMDDQRVSISMVSIGDGMTIC 287

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q86VU5 COMTD1 "Catechol O-methyltransferase domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 83/222 (37%), Positives = 128/222 (57%)

Query:    16 QSEELYRYILETSVYPREPEHLKEIRDVTADHPRA-MMSTAPDAGQLMAMLLKLVNAKKT 74
             +   L++Y+L  S+  RE   L+ +R +T + P+   M T   A QL+A L +L+ AKK 
Sbjct:    50 EDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQA-QLLANLARLIQAKKA 106

Query:    75 IEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134
             +++G FTGYS L  AL +P DG+++  +V+ +  E+G P+ ++A  +HKI+     AL  
Sbjct:   107 LDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 166

Query:   135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQ 194
             LD+LL   E  G+FD A VDADK N   Y+ER ++LL+ GGI      LW G V      
Sbjct:   167 LDELLAAGE-AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ---- 221

Query:   195 VPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              P       +   +LN  +  D R+ +S +PLGDG+T+ ++I
Sbjct:   222 -PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XGD6	CAMT1_MAIZE	2, ., 1, ., 1, ., 1, 0, 4	0.5796	0.9493	0.8720	N/A	no
Q9SWB8	CAMT2_EUCGL	2, ., 1, ., 1, ., 1, 0, 4	0.5884	0.9493	0.9109	N/A	no
Q43161	CAMT_STELP	2, ., 1, ., 1, ., 1, 0, 4	0.6	0.9493	0.9336	N/A	no
Q9SLP8	CAMT_CITNA	2, ., 1, ., 1, ., 1, 0, 4	0.5739	0.9662	0.9870	N/A	no
Q9C5D7	CAMT3_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.6916	0.9578	0.9784	yes	no
Q40313	CAMT_MEDSA	2, ., 1, ., 1, ., 1, 0, 4	0.6194	0.9493	0.9109	N/A	no
Q41720	CAMT_ZINEL	2, ., 1, ., 1, ., 1, 0, 4	0.5929	0.9493	0.9183	N/A	no
P28034	CAMT_PETCR	2, ., 1, ., 1, ., 1, 0, 4	0.5720	0.9915	0.9751	N/A	no
Q86VU5	CMTD1_HUMAN	2, ., 1, ., 1, ., -	0.3619	0.8987	0.8129	yes	no
O24149	CAMT2_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5929	0.9493	0.9297	N/A	no
Q9XGD5	CAMT2_MAIZE	2, ., 1, ., 1, ., 1, 0, 4	0.5796	0.9493	0.8522	N/A	no
Q42945	CAMT6_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5840	0.9493	0.9109	N/A	no
O81185	CAMT1_EUCGL	2, ., 1, ., 1, ., 1, 0, 4	0.6017	0.9451	0.9105	N/A	no
O24144	CAMT1_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5884	0.9493	0.9414	N/A	no
Q43095	CAMT_POPTM	2, ., 1, ., 1, ., 1, 0, 4	0.6238	0.9493	0.9109	N/A	no
O65162	CAMT_MESCR	2, ., 1, ., 1, ., 1, 0, 4	0.5929	0.9493	0.8858	N/A	no
O04854	CAMT_EUCGU	2, ., 1, ., 1, ., 1, 0, 4	0.6061	0.9451	0.8995	N/A	no
O04899	CAMT5_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5941	0.9957	0.9833	N/A	no
P93711	CAMT_POPKI	2, ., 1, ., 1, ., 1, 0, 4	0.5327	0.9493	0.9574	N/A	no
Q9ZTT5	CAMT_PINTA	2, ., 1, ., 1, ., 1, 0, 4	0.5814	0.9535	0.8725	N/A	no
O65862	CAMT1_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.6238	0.9493	0.9109	yes	no
O24151	CAMT4_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5884	0.9493	0.9297	N/A	no
O24150	CAMT3_TOBAC	2, ., 1, ., 1, ., 1, 0, 4	0.5929	0.9493	0.9297	N/A	no
Q8H9B6	CAMT_SOLTU	2, ., 1, ., 1, ., 1, 0, 4	0.6017	0.9493	0.9297	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.104	0.946
3rd Layer	2.1.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1450034 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	1e-107
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	1e-103
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	1e-101
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	3e-52
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-45
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	2e-08
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	3e-04
PRK13944	205	PRK13944, PRK13944, protein-L-isoaspartate O-methy	0.002
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	0.003

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  309 bits (792), Expect = e-107
 Identities = 130/229 (56%), Positives = 174/229 (75%), Gaps = 3/229 (1%)

Query: 11  SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADH--PRAMMSTAPDAGQLMAMLLKL 68
            KG+L+SE L +YI+ETS YPRE E LKE+R+ T       + M    D G  ++ML+K+
Sbjct: 7   PKGILKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKI 66

Query: 69  VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE 128
           +NAK T+EIGVFTGYSLL TAL +PEDG+I AID+++E YE+GL  IKKAGVDHKINFI+
Sbjct: 67  MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ 126

Query: 129 SEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTV 188
           S+ALS LDQLL +      FD+AFVDADK NY ++HE+L+KL+KVGGI  +DNTLW G V
Sbjct: 127 SDALSALDQLLNNDPKP-EFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFV 185

Query: 189 AMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
           A  E++VP+H+R  R+A L+ N+ LA DPR+++S + +GDG+T+C R+ 
Sbjct: 186 AQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  298 bits (763), Expect = e-103
 Identities = 137/226 (60%), Positives = 181/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ LY+YILETSVYPREPE +KE+R++TA HP  +M+T+ D GQ + MLLKL+NA
Sbjct: 21  KSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINA 80

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGV+TGYSLL TAL +PEDG+I+A+D+NRE YE+GLPVI+KAGV HKI+F E  A
Sbjct: 81  KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA 140

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAM 190
           L VLDQ+++D +  G+FD+ FVDADK NY NYH+RL+ L+KVGG+  YDNTLW G+ VA 
Sbjct: 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAP 200

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
            +  +  ++R  R   L+LN++LA DPRI++  +P+GDGIT+C RI
Sbjct: 201 PDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Length = 247

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  291 bits (747), Expect = e-101
 Identities = 116/212 (54%), Positives = 154/212 (72%), Gaps = 8/212 (3%)

Query: 25  LETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYS 84
           LETSV   E E LKE+R+ TA  P + M  +P+ GQ ++MLLKL+ AK+T+EIGVFTGYS
Sbjct: 1   LETSVR--EHEILKELREATAKLPLSPMQISPEEGQFLSMLLKLIGAKRTLEIGVFTGYS 58

Query: 85  LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN 144
           LL TAL +PEDG+I A D++ E YEIGLP I+KAGV  KI+F   +AL  L++L+KD   
Sbjct: 59  LLATALALPEDGKITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTLEELVKDKPL 118

Query: 145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQ 204
            G FD+ FVDADK NY NY+ERL++L+KVGG+   DNTLW G VA  +++VP  +R    
Sbjct: 119 -GEFDFIFVDADKSNYPNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDEVPKTVR---- 173

Query: 205 ATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              +LN+ LA D R+++S +P+GDGIT+C RI
Sbjct: 174 -VRELNKLLASDERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  170 bits (431), Expect = 3e-52
 Identities = 84/215 (39%), Positives = 134/215 (62%), Gaps = 11/215 (5%)

Query: 20  LYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGV 79
           LY Y+L      REP+ L+++R+ T+    + M  +PD  QL+AML++++ A++ IE+GV
Sbjct: 71  LYDYVLSNV---REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGV 127

Query: 80  FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139
           +TGYS L  AL +PE G ++A + +  + E+     + AGV HK+N     A   L  ++
Sbjct: 128 YTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI 187

Query: 140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHL 199
           ++ E   S+D+AFVDADK  Y +Y E L++L++VGG+ V DN LW G V  ++  V D  
Sbjct: 188 QNGE-GSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRV--ADPLVND-- 242

Query: 200 RGGRQATL-DLNRSLADDPRIQLSHVPLGDGITIC 233
              +  ++ + N+ L DD R+ +S VP+GDG+TIC
Sbjct: 243 --AKTISIRNFNKKLMDDKRVSISMVPIGDGMTIC 275

Length = 278

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  150 bits (382), Expect = 2e-45
 Identities = 79/217 (36%), Positives = 114/217 (52%), Gaps = 12/217 (5%)

Query: 18  EELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEI 77
           E+LY Y+      P EP  L    +  A      +   P+ G L+ +L +L   K+ +EI
Sbjct: 10  EDLYDYLEALI--PGEPPALLAELEEFARENGVPIID-PETGALLRLLARLSGPKRILEI 66

Query: 78  GVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLD 136
           G   GYS L  AL +P+DG++  I+ + E  EI    + +AGVD +I  +   +AL VL 
Sbjct: 67  GTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS 126

Query: 137 QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVP 196
           +LL     +GSFD  F+DADK +Y  Y ER + LL+ GG+ V DN L+GG VA   +   
Sbjct: 127 RLL-----DGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVA---DPSI 178

Query: 197 DHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITIC 233
              R   +   D N  L +DPR     +PLGDG+ + 
Sbjct: 179 RDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLS 215

Length = 219

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 75  IEIGVFTGYSLLLTALTIPE--DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
           +EIGV++G S L  A  + +   G++ +ID            ++KAG+  ++  +  ++L
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGAN--LRKAGLADRVRLLRGDSL 58

Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYH--ERLMKLLKVGGIAVYDNT 182
             L +L      +GS D  F+D D          E  + LL  GGI V+ + 
Sbjct: 59  EALARL-----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 11/123 (8%)

Query: 56  PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI 115
            DAG ++A L  +    + +E G  +G      A  +  +G +   ++  +  +     +
Sbjct: 81  KDAGYIVARL-GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENL 139

Query: 116 KKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGG 175
            + G+  ++     +         ++  +E   D  F+D    + WN  E +   LK GG
Sbjct: 140 SEFGLGDRVTLKLGDV--------REGIDEEDVDAVFLDLP--DPWNVLEHVSDALKPGG 189

Query: 176 IAV 178
           + V
Sbjct: 190 VVV 192

Length = 256

>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 1   MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVT-ADHPRAMMSTAP-DA 58
           MA++  +    +G+++SE + + +L     PRE   + E R +   D P  + + A   A
Sbjct: 1   MAKRLVEELVREGIIKSERVKKAMLSV---PREEFVMPEYRMMAYEDRPLPLFAGATISA 57

Query: 59  GQLMAMLLKLVNAK---KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRE 106
             ++AM+ +L+  +   K +E+G  +GY   + A  I   G++  +++ +E
Sbjct: 58  PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKE 108

Length = 205

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 75  IEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK---AGVDHKINFIESEA 131
           ++IG  TG   +  A   P   ++  +D++ E  E+     ++     +  +I F++ +A
Sbjct: 6   LDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLEL----ARENAKLALGPRITFVQGDA 60

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGI 176
              LD L         FD  F+     +     + L  LLK GG 
Sbjct: 61  PDALDLL-------EGFDAVFIGGGGGDLLELLDALASLLKPGGR 98

Protein in this family function as methyltransferases. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02476	278	O-methyltransferase	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.78
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.75
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.75
PRK04457	262	spermidine synthase; Provisional	99.72
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.71
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.71
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.71
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.7
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.7
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.7
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.7
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.69
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.68
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.68
PLN03075	296	nicotianamine synthase; Provisional	99.67
PRK07402	196	precorrin-6B methylase; Provisional	99.67
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.66
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.66
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.65
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.65
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.64
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.63
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.63
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.63
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.63
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.61
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.61
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.6
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.6
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.6
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.6
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.59
PRK00811	283	spermidine synthase; Provisional	99.59
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.59
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.59
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.59
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.59
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.58
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.58
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.57
PLN02244	340	tocopherol O-methyltransferase	99.57
PRK01581	374	speE spermidine synthase; Validated	99.56
COG4123	248	Predicted O-methyltransferase [General function pr	99.55
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.54
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.54
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.54
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.53
PRK11207	197	tellurite resistance protein TehB; Provisional	99.53
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.52
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.52
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.52
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.52
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.52
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.51
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.5
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.5
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.5
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.5
PLN02366	308	spermidine synthase	99.5
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.49
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.49
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.49
PRK04266	226	fibrillarin; Provisional	99.49
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.49
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.49
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.48
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.47
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.47
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.47
PRK08317	241	hypothetical protein; Provisional	99.45
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.45
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.45
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.45
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.44
PLN02823	336	spermine synthase	99.44
PRK12335	287	tellurite resistance protein TehB; Provisional	99.44
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.44
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.44
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.43
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.43
PRK14968	188	putative methyltransferase; Provisional	99.43
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.43
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.42
PRK06922	677	hypothetical protein; Provisional	99.42
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.42
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.42
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.41
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.4
PRK14967	223	putative methyltransferase; Provisional	99.4
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.4
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.39
PLN02336	475	phosphoethanolamine N-methyltransferase	99.39
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.38
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.38
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.38
PRK03612	521	spermidine synthase; Provisional	99.38
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.38
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.37
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.37
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.36
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.36
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.35
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.35
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.35
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.34
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.34
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.34
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.34
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.33
KOG4300	252	consensus Predicted methyltransferase [General fun	99.33
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.32
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.32
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.32
PLN02490	340	MPBQ/MSBQ methyltransferase	99.32
PTZ00146	293	fibrillarin; Provisional	99.32
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.31
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.31
TIGR03438	301	probable methyltransferase. This model represents	99.31
COG2890	280	HemK Methylase of polypeptide chain release factor	99.31
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.29
PLN02336	475	phosphoethanolamine N-methyltransferase	99.29
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.29
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.29
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.28
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.28
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.26
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.25
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.25
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.24
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.24
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.24
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.23
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.23
PRK06202	232	hypothetical protein; Provisional	99.22
KOG1271	227	consensus Methyltransferases [General function pre	99.22
PHA03411	279	putative methyltransferase; Provisional	99.21
TIGR00438	188	rrmJ cell division protein FtsJ.	99.21
KOG2904	328	consensus Predicted methyltransferase [General fun	99.21
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.21
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.2
PRK05785	226	hypothetical protein; Provisional	99.19
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.19
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.12
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.12
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.12
PRK00536	262	speE spermidine synthase; Provisional	99.11
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.1
KOG2899	288	consensus Predicted methyltransferase [General fun	99.1
PLN02672	1082	methionine S-methyltransferase	99.08
PHA03412	241	putative methyltransferase; Provisional	99.08
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.07
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.07
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.07
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.07
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.07
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.06
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.06
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.06
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.05
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.04
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.04
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.03
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.03
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.02
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.02
COG2520	341	Predicted methyltransferase [General function pred	98.99
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.99
COG2521	287	Predicted archaeal methyltransferase [General func	98.98
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.97
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.96
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.94
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.94
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.93
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.93
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.9
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.88
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.87
KOG2730	263	consensus Methylase [General function prediction o	98.86
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.86
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.86
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.85
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.85
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.84
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.82
KOG2361	264	consensus Predicted methyltransferase [General fun	98.81
KOG3010	261	consensus Methyltransferase [General function pred	98.79
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.78
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.78
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.73
PRK04148	134	hypothetical protein; Provisional	98.71
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.65
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.65
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.65
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.62
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.6
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.57
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.56
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.53
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.52
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.51
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.51
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.46
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.44
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.41
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.4
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.39
PRK10742	250	putative methyltransferase; Provisional	98.39
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.38
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.37
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.37
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.37
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.36
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.31
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.31
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.29
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.28
PF13679	141	Methyltransf_32: Methyltransferase domain	98.26
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.24
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.23
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.23
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.21
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.16
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.13
COG4076	252	Predicted RNA methylase [General function predicti	98.13
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.11
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.08
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.04
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.03
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.01
KOG3115	249	consensus Methyltransferase-like protein [General	98.01
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.0
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.96
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.92
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	97.91
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.86
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.86
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.84
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.82
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.79
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.69
KOG2940	325	consensus Predicted methyltransferase [General fun	97.64
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.6
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.6
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.57
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.54
PHA01634	156	hypothetical protein	97.53
COG3897	218	Predicted methyltransferase [General function pred	97.53
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.52
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.5
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.49
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.47
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.45
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.45
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.43
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.4
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.37
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.34
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.33
COG4798	238	Predicted methyltransferase [General function pred	97.27
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.26
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.08
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.05
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.04
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.93
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.93
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.92
COG0286	489	HsdM Type I restriction-modification system methyl	96.88
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.86
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.79
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.78
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	96.7
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.58
KOG1227	351	consensus Putative methyltransferase [General func	96.51
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.5
COG4301	321	Uncharacterized conserved protein [Function unknow	96.35
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.31
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.2
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.0
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.89
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.87
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.74
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.67
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.58
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.46
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	95.39
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.38
PRK11524	284	putative methyltransferase; Provisional	95.36
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.32
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.22
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.17
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.15
KOG1331	293	consensus Predicted methyltransferase [General fun	95.07
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.05
PTZ00357	1072	methyltransferase; Provisional	95.05
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.03
PRK13699	227	putative methylase; Provisional	94.87
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.8
PRK13699	227	putative methylase; Provisional	94.76
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	94.73
PRK11524	284	putative methyltransferase; Provisional	94.67
KOG2360	413	consensus Proliferation-associated nucleolar prote	94.44
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.38
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.38
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.35
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.25
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.16
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.16
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	94.0
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	93.97
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	93.94
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.94
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.9
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.87
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	93.68
PLN02740	381	Alcohol dehydrogenase-like	93.67
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.5
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	93.48
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.47
PLN02827	378	Alcohol dehydrogenase-like	93.43
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.39
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.31
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.31
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	93.24
COG3129	292	Predicted SAM-dependent methyltransferase [General	93.2
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.0
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.89
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	92.83
COG3315	297	O-Methyltransferase involved in polyketide biosynt	92.72
KOG2078	495	consensus tRNA modification enzyme [RNA processing	92.58
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	92.48
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	92.44
COG1568	354	Predicted methyltransferases [General function pre	92.44
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.43
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.41
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.33
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	92.23
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	92.19
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	92.17
COG1565	370	Uncharacterized conserved protein [Function unknow	92.14
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.14
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.09
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.86
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.86
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	91.85
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	91.68
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.68
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	91.56
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	91.44
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.38
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	91.23
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	91.22
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	91.17
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.13
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.08
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	91.07
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	91.06
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	91.04
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	90.8
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	90.73
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.63
KOG3924	419	consensus Putative protein methyltransferase invol	90.54
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	90.48
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	90.3
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	90.3
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	90.19
KOG2352	482	consensus Predicted spermine/spermidine synthase [	90.1
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	90.09
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	90.07
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.06
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	89.96
KOG0780	483	consensus Signal recognition particle, subunit Srp	89.95
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	89.92
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	89.92
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	89.92
COG2961	279	ComJ Protein involved in catabolism of external DN	89.91
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	89.87
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	89.86
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	89.83
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	89.74
PRK09496	453	trkA potassium transporter peripheral membrane com	89.71
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	89.42
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.28
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	89.26
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	89.17
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	89.06
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	89.06
PRK09496	453	trkA potassium transporter peripheral membrane com	89.06
PRK08324	681	short chain dehydrogenase; Validated	88.97
PRK07417	279	arogenate dehydrogenase; Reviewed	88.91
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	88.89
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	88.84
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	88.83
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	88.79
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	88.78
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	88.73
COG1255	129	Uncharacterized protein conserved in archaea [Func	88.72
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	88.67
PLN02256	304	arogenate dehydrogenase	88.61
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	88.55
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	88.55
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	88.47
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.43
PLN02353	473	probable UDP-glucose 6-dehydrogenase	88.25
PRK06940	275	short chain dehydrogenase; Provisional	88.23
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.09
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	88.01
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	87.94
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	87.87
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.85
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	87.78
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	87.75
PRK08655	437	prephenate dehydrogenase; Provisional	87.7
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.67
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	87.62
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	87.61
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	87.59
KOG2782	303	consensus Putative SAM dependent methyltransferase	87.59
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	87.59
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	87.52
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	87.44
PRK08507	275	prephenate dehydrogenase; Validated	87.4
PRK10669	558	putative cation:proton antiport protein; Provision	87.32
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	87.24
PRK07109	334	short chain dehydrogenase; Provisional	87.14
PRK07063	260	short chain dehydrogenase; Provisional	87.12
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	87.12
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	87.11
PRK05854	313	short chain dehydrogenase; Provisional	87.08
PRK06949	258	short chain dehydrogenase; Provisional	87.07
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	86.7
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	86.69
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	86.67
PRK07523	255	gluconate 5-dehydrogenase; Provisional	86.56
PRK08213	259	gluconate 5-dehydrogenase; Provisional	86.43
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	86.38
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	86.35
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	86.32
PRK07680	273	late competence protein ComER; Validated	86.29
PRK07326	237	short chain dehydrogenase; Provisional	86.27
PRK06914	280	short chain dehydrogenase; Provisional	86.16
PRK05599	246	hypothetical protein; Provisional	86.13
PLN02514	357	cinnamyl-alcohol dehydrogenase	85.99
PRK10083	339	putative oxidoreductase; Provisional	85.99
PRK03659	601	glutathione-regulated potassium-efflux system prot	85.98
PRK05867	253	short chain dehydrogenase; Provisional	85.98
COG4017	254	Uncharacterized protein conserved in archaea [Func	85.8
COG0569	225	TrkA K+ transport systems, NAD-binding component [	85.78
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	85.69
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	85.64
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	85.54
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	85.3
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	85.3
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	85.28
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	85.27
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	85.2
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	85.18
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.07
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.06
PRK05967	395	cystathionine beta-lyase; Provisional	84.98
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	84.95
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	84.92
PRK08114	395	cystathionine beta-lyase; Provisional	84.86
KOG2912	419	consensus Predicted DNA methylase [Function unknow	84.82
PRK07774	250	short chain dehydrogenase; Provisional	84.75
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	84.75
PF03269	177	DUF268: Caenorhabditis protein of unknown function	84.72
PRK06172	253	short chain dehydrogenase; Provisional	84.67
PRK07062	265	short chain dehydrogenase; Provisional	84.59
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.57
PRK06223	307	malate dehydrogenase; Reviewed	84.49
PTZ00354	334	alcohol dehydrogenase; Provisional	84.41
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	84.2
PRK09242	257	tropinone reductase; Provisional	84.13
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.08
PRK08328	231	hypothetical protein; Provisional	84.01
PRK05939	397	hypothetical protein; Provisional	83.96
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	83.9
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	83.83
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	83.75
PLN02650	351	dihydroflavonol-4-reductase	83.7
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	83.68
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	83.67
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	83.64
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	83.61
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	83.57
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	83.56
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	83.49
PRK15116	268	sulfur acceptor protein CsdL; Provisional	83.43
PRK07478	254	short chain dehydrogenase; Provisional	83.42
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	83.4

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=1.1e-40  Score=270.84  Aligned_cols=223  Identities=61%  Similarity=1.038  Sum_probs=198.3

Q ss_pred             CCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026547           14 LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP   93 (237)
Q Consensus        14 ~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~   93 (237)
                      ....+.+++|+..++..+..++.+.++++.+..++++.|.+++.++++|..+++..++++|||||+++|++++++|.+++
T Consensus        23 ~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~  102 (247)
T PLN02589         23 LLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALP  102 (247)
T ss_pred             ccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCC
Confidence            35568999999887767788899999999999998888889999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCC
Q 026547           94 EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKV  173 (237)
Q Consensus        94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~  173 (237)
                      ++++|+++|.+++..+.|+++++++|+.++|+++.|++.+.++.+.+.....++||+||+|+++.+|..+|+.+.++|++
T Consensus       103 ~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~  182 (247)
T PLN02589        103 EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKV  182 (247)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCC
Confidence            88999999999999999999999999999999999999999998754311126899999999999999999999999999


Q ss_pred             CeEEEEeCcCCCCcccCCCCCCCcc-ccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          174 GGIAVYDNTLWGGTVAMSEEQVPDH-LRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       174 gG~lv~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      ||+|++||++|+|.+.++....++. .......+++|++.+..+|+++++++|+|+|+.+++|+
T Consensus       183 GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        183 GGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             CeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            9999999999999998875432221 12223468899999999999999999999999999986

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=7.8e-41  Score=265.14  Aligned_cols=199  Identities=43%  Similarity=0.776  Sum_probs=179.4

Q ss_pred             CCcHHHHHHHHHHhhCC-CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHH
Q 026547           32 REPEHLKEIRDVTADHP-RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEI  110 (237)
Q Consensus        32 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~  110 (237)
                      .+++.++++++.+.... ++.|.+++.++++|..+++..++++||||||++|++++++|+++|++++|+++|++++..+.
T Consensus         6 ~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~   85 (205)
T PF01596_consen    6 REPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEI   85 (205)
T ss_dssp             CSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHH
Confidence            47899999999988765 77889999999999999999999999999999999999999999988999999999999999


Q ss_pred             HHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcCCCCcccC
Q 026547          111 GLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM  190 (237)
Q Consensus       111 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~  190 (237)
                      |+++++.+|+.++|+++.+|+.+.++.+..+. ..++||+||+|+.+.+|..+|+.+.++|++||+|++||++|+|.+..
T Consensus        86 A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~  164 (205)
T PF01596_consen   86 ARENFRKAGLDDRIEVIEGDALEVLPELANDG-EEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD  164 (205)
T ss_dssp             HHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-TTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred             HHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-CCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence            99999999999999999999999999886541 13589999999999999999999999999999999999999999998


Q ss_pred             CCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      +...     ...+..+++|++++.++|+|+++++|+++|+.+++||
T Consensus       165 ~~~~-----~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  165 PDDE-----DPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             TTGG-----SHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             ccch-----hhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            8444     2345669999999999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=100.00  E-value=2.7e-39  Score=265.47  Aligned_cols=216  Identities=38%  Similarity=0.679  Sum_probs=194.8

Q ss_pred             CCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026547           12 KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT   91 (237)
Q Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~   91 (237)
                      +.....+.+++|+.++  . .+++.+.++++.+.++..+.|.+++.++++|..++...++++||||||++|+++++++..
T Consensus        63 ~~~~~~~~i~~Y~~~~--~-~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~a  139 (278)
T PLN02476         63 QVISLTPRLYDYVLSN--V-REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALV  139 (278)
T ss_pred             CcccchHHHHHHHHhc--C-CCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHh
Confidence            3445567999999985  2 578899999999998877788999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccC
Q 026547           92 IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLL  171 (237)
Q Consensus        92 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L  171 (237)
                      ++++++|+++|.+++.++.|+++++++|+.++|+++.||+.+.++.+.++ ...++||+||+|+++.++..+++.+.++|
T Consensus       140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL  218 (278)
T PLN02476        140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLV  218 (278)
T ss_pred             CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhc
Confidence            98789999999999999999999999999999999999999999876432 11368999999999999999999999999


Q ss_pred             CCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          172 KVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      ++||+|++||++|+|.+.++...     ...+..+++|++++.++|+++++++|+|+|+.+++|+
T Consensus       219 ~~GGvIV~DNvL~~G~V~d~~~~-----d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        219 RVGGVIVMDNVLWHGRVADPLVN-----DAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             CCCcEEEEecCccCCcccCcccC-----CHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            99999999999999999887544     2346789999999999999999999999999999985

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=3.8e-39  Score=261.82  Aligned_cols=221  Identities=57%  Similarity=0.976  Sum_probs=197.3

Q ss_pred             CcHHHHHHHhhccCCCCCcHHHHHHHHHHhhC--CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC
Q 026547           16 QSEELYRYILETSVYPREPEHLKEIRDVTADH--PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP   93 (237)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~   93 (237)
                      ..+.+++|+.+++..+++++.+.++++.+.++  ..+.|.+.+..+++|..++...++++|||+|||+|+++++++++++
T Consensus        12 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~   91 (234)
T PLN02781         12 KSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALP   91 (234)
T ss_pred             CcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCC
Confidence            34689999988765667889999999998876  3466788999999999999999999999999999999999999988


Q ss_pred             CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCC
Q 026547           94 EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKV  173 (237)
Q Consensus        94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~  173 (237)
                      .+++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+.++ ...++||+||+|+.+..+..+++.+.++|+|
T Consensus        92 ~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~  170 (234)
T PLN02781         92 EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKV  170 (234)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence            789999999999999999999999999999999999999998876432 1136899999999999999999999999999


Q ss_pred             CeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          174 GGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       174 gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      ||+|+++|++|+|.+.++....+++....++.+++|++.+.++|+++++++|+|+|+.+++|+.
T Consensus       171 GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~~  234 (234)
T PLN02781        171 GGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV  234 (234)
T ss_pred             CeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence            9999999999999999886655555556678899999999999999999999999999999863

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=1.3e-38  Score=252.16  Aligned_cols=215  Identities=35%  Similarity=0.602  Sum_probs=192.0

Q ss_pred             CCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026547           12 KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT   91 (237)
Q Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~   91 (237)
                      ....+.+.+.+|++++.. +..+..++.+++.+.+.+.+.+  .++++++|..++...++++|||||++.|+++++||..
T Consensus         4 ~~~~~~~~l~~y~~~~~~-~~~~~~~~~~~e~a~~~~~pi~--~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~   80 (219)
T COG4122           4 RMPNMDEDLYDYLEALIP-GEPPALLAELEEFARENGVPII--DPETGALLRLLARLSGPKRILEIGTAIGYSALWMALA   80 (219)
T ss_pred             ccccchHHHHHHHHhhcc-cCCchHHHHHHHHhHhcCCCCC--ChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhh
Confidence            456678999999999752 2467888889998888877654  4999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc
Q 026547           92 IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKL  170 (237)
Q Consensus        92 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~  170 (237)
                      +|.+++++++|+++++++.|+++++++|+.++|+++. +|+.+.+...     ..++||+||+|+++.+++++|+.+.++
T Consensus        81 l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----~~~~fDliFIDadK~~yp~~le~~~~l  155 (219)
T COG4122          81 LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----LDGSFDLVFIDADKADYPEYLERALPL  155 (219)
T ss_pred             CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----cCCCccEEEEeCChhhCHHHHHHHHHH
Confidence            9988999999999999999999999999999999999 6999988862     158999999999999999999999999


Q ss_pred             CCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          171 LKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       171 L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      |+|||+|++||++|+|.+.++..   +..+..++.++.|++++.++|++..+++|+|+|+.+++|+.
T Consensus       156 Lr~GGliv~DNvl~~G~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~~  219 (219)
T COG4122         156 LRPGGLIVADNVLFGGRVADPSI---RDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKRG  219 (219)
T ss_pred             hCCCcEEEEeecccCCccCCccc---hhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeecC
Confidence            99999999999999999988743   22244566699999999999999999999999999999874

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.1e-36  Score=235.00  Aligned_cols=222  Identities=55%  Similarity=0.941  Sum_probs=201.5

Q ss_pred             CCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCC--CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHh
Q 026547           13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHP--RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL   90 (237)
Q Consensus        13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~   90 (237)
                      ....++.++.|+..++.++.+.+.+.++++.+..++  ...|.+.+..++++..+++..+++++||||+.+|++++.+|.
T Consensus        14 ~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Al   93 (237)
T KOG1663|consen   14 LILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVAL   93 (237)
T ss_pred             cccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHH
Confidence            778889999999999889999999999999998874  667999999999999999999999999999999999999999


Q ss_pred             hCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc
Q 026547           91 TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKL  170 (237)
Q Consensus        91 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~  170 (237)
                      ++|++++|+++|++++..+.+.+..+.+|...+|+++++.+.+.+.++.+.. ..++||++|+|+++.++..+++++.++
T Consensus        94 alp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~-~~~tfDfaFvDadK~nY~~y~e~~l~L  172 (237)
T KOG1663|consen   94 ALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG-ESGTFDFAFVDADKDNYSNYYERLLRL  172 (237)
T ss_pred             hcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC-CCCceeEEEEccchHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999887653 468999999999999999999999999


Q ss_pred             CCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          171 LKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       171 L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      +++||+|++||++|.|.+.+|....+.+......+ -++++++..+|++..+.+|+|+|+.+++|+
T Consensus       173 lr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~-~~~n~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  173 LRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREA-LNLNKKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             cccccEEEEeccccCCcccCcccCCCcchhhhhhh-hhhhhHhccCcceeeEeeeccCceeeeccC
Confidence            99999999999999998888766544332222222 399999999999999999999999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.78  E-value=1.4e-18  Score=125.38  Aligned_cols=104  Identities=22%  Similarity=0.362  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+.++++..+ +.+|+++|+++++++.+++++...+..++++++++|+ ......      .++||
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD   72 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence            467999999999999999999655 8899999999999999999998788888999999999 332222      47899


Q ss_pred             EEEEeC-CCcC------cHHHHHHHHccCCCCeEEEEeC
Q 026547          150 YAFVDA-DKVN------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       150 ~i~id~-~~~~------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|++.. ....      ...+++.+.+.|+|||+++++.
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999988 3222      2456999999999999999874

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.75  E-value=1.5e-16  Score=122.12  Aligned_cols=118  Identities=25%  Similarity=0.272  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ++.-.+........++.+++|||||+|..++.++...| .++|+++|.++++++..++|.++.|. ++++++.+++.+.+
T Consensus        20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L   97 (187)
T COG2242          20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhh
Confidence            34443444445667888999999999999999996655 89999999999999999999999995 57999999999998


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +.+       .+||.||+.+. .+....++.++..|+|||.||++-+.
T Consensus        98 ~~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          98 PDL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             cCC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            754       48999999998 78899999999999999999998765

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.75  E-value=3.9e-17  Score=130.48  Aligned_cols=116  Identities=22%  Similarity=0.310  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      +.....+...+...++.+|||+|||+|+.+..+++.++..++|+++|+++++++.|+++++..+..++++++.+|+.+.+
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence            44444444555556678999999999999999998876568999999999999999999999888778999999987654


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +.       ..+||+|+++......+   +.+.+.|+|||.+++..
T Consensus       138 ~~-------~~~fD~Ii~~~~~~~~~---~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        138 EK-------HAPFDAIIVTAAASTIP---SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cc-------CCCccEEEEccCcchhh---HHHHHhcCcCcEEEEEE
Confidence            32       37899999987655443   56778999999998853

>PRK04457 spermidine synthase; Provisional

Probab=99.72  E-value=6.5e-16  Score=127.66  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ++...++..+....++++|||||||.|.++.++++..| +.+|+++|+++++++.|++++...+..++++++.+|+.+++
T Consensus        52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l  130 (262)
T PRK04457         52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI  130 (262)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence            44444555555556788999999999999999999887 78999999999999999999876555578999999999988


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...      .++||+|++|.....       ..++++.+.+.|+|||+++++
T Consensus       131 ~~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        131 AVH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             HhC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            754      468999999964322       368999999999999999996

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.1e-16  Score=125.49  Aligned_cols=119  Identities=22%  Similarity=0.267  Sum_probs=101.1

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      +.+...+.+.....|..++...++.+|||||||+||.+.-|++...   +|+++|..++..+.|+++++..|+.+ |.++
T Consensus        50 ~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~  125 (209)
T COG2518          50 GCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYEN-VTVR  125 (209)
T ss_pred             CCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEE
Confidence            3444556777777888888899999999999999999999998754   99999999999999999999999976 9999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++|...-++.       ..+||.|++.+.....++   .+.+.|++||.+++-
T Consensus       126 ~gDG~~G~~~-------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         126 HGDGSKGWPE-------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             ECCcccCCCC-------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            9999887664       389999999987766553   366788999999873

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.71  E-value=3.1e-16  Score=114.84  Aligned_cols=112  Identities=22%  Similarity=0.277  Sum_probs=92.9

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +.......++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++..+.. +++++.+|+.+.++..   
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~---   85 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS---   85 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh---
Confidence            33334455667999999999999999999877 589999999999999999999888764 5899999876544332   


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         .++||.|+++.......++++.+.+.|+|||.+++.-
T Consensus        86 ---~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        86 ---LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             ---cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence               3689999998766667889999999999999999863

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.71  E-value=7.6e-16  Score=121.32  Aligned_cols=117  Identities=26%  Similarity=0.271  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      .......+...+...++.+|||+|||+|..++.+++..+ +.+|+++|+++.+++.++++++..++. +++++.+|+...
T Consensus        16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~   93 (187)
T PRK08287         16 KEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE   93 (187)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh
Confidence            344444444455566788999999999999999998876 789999999999999999999888874 599999987432


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +         .++||+|+++.....+..+++.+.+.|+|||.++++.+
T Consensus        94 ~---------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         94 L---------PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             c---------CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            1         36899999987666778899999999999999999754

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.70  E-value=3.7e-16  Score=125.77  Aligned_cols=154  Identities=25%  Similarity=0.353  Sum_probs=109.8

Q ss_pred             CCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhh-CC----CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHH
Q 026547           13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTAD-HP----RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLL   87 (237)
Q Consensus        13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~-~~----~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~   87 (237)
                      ....+.++.+.+..   +|++.-.-......+.. ..    .+.....+.....+..++...++.+|||||||+|+.+..
T Consensus        18 ~~v~~~~v~~a~~~---v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~   94 (215)
T TIGR00080        18 GYIKSKRVIDALLS---VPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAV   94 (215)
T ss_pred             CCcCCHHHHHHHHh---CChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHH
Confidence            34466777777665   44443222222222221 11    122223455555666666777889999999999999999


Q ss_pred             HHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHH
Q 026547           88 TALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERL  167 (237)
Q Consensus        88 la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~  167 (237)
                      +++..+.+++|+++|+++++++.|+++++..++ ++++++++|+.+.++.       ..+||+|+++......   .+.+
T Consensus        95 la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~-------~~~fD~Ii~~~~~~~~---~~~~  163 (215)
T TIGR00080        95 LAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEP-------LAPYDRIYVTAAGPKI---PEAL  163 (215)
T ss_pred             HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcc-------cCCCCEEEEcCCcccc---cHHH
Confidence            999876567899999999999999999999987 4699999998765432       3689999998765544   3557


Q ss_pred             HccCCCCeEEEEe
Q 026547          168 MKLLKVGGIAVYD  180 (237)
Q Consensus       168 ~~~L~~gG~lv~~  180 (237)
                      .+.|+|||.+++.
T Consensus       164 ~~~L~~gG~lv~~  176 (215)
T TIGR00080       164 IDQLKEGGILVMP  176 (215)
T ss_pred             HHhcCcCcEEEEE
Confidence            7889999999884

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.70  E-value=5.4e-16  Score=123.25  Aligned_cols=112  Identities=25%  Similarity=0.359  Sum_probs=96.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....++.+|||+|||+|..++.+++..++.++|+++|+++++++.++++++..++.+++.++.+|+.+.++..      .
T Consensus        36 l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~  109 (198)
T PRK00377         36 LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------N  109 (198)
T ss_pred             cCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------C
Confidence            3456778999999999999999988765568999999999999999999999886677999999998766543      3


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ++||+||+.........+++.+.+.|+|||.++++.+.
T Consensus       110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (198)
T PRK00377        110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL  147 (198)
T ss_pred             CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence            68999999876667788999999999999999986543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.70  E-value=7.9e-16  Score=120.41  Aligned_cols=102  Identities=23%  Similarity=0.307  Sum_probs=87.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..++.++...+ .++|+++|.++.+++.+++++++.++. +++++++|+.+...        .++
T Consensus        40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~--------~~~  109 (181)
T TIGR00138        40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH--------EEQ  109 (181)
T ss_pred             hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc--------cCC
Confidence            34588999999999999999987665 689999999999999999999988875 59999999977521        379


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|++++ ..++..+++.+.++|+|||.+++.
T Consensus       110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            99999887 556778899999999999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.70  E-value=4.2e-16  Score=125.10  Aligned_cols=118  Identities=25%  Similarity=0.347  Sum_probs=97.3

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      ..+.+.....+...+...++.+|||||||+|+.+..+++..+.+++|+++|+++++++.++++++..+. ++++++++|+
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~  136 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG  136 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence            346677777777777788889999999999999999998876578999999999999999999999887 4699999998


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .+.++.       ..+||+|++++.....+   +.+.+.|+|||.+++.
T Consensus       137 ~~~~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        137 TLGYEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ccCCCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence            765431       37899999987655443   4567789999998884

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.69  E-value=3.7e-16  Score=125.95  Aligned_cols=117  Identities=21%  Similarity=0.320  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      -+.+-.+....++.+|||+|||+|-.++.+++..+ .++|+++|+|+.|++.+++.....+..+ ++++++|+.+.    
T Consensus        40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L----  113 (238)
T COG2226          40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL----  113 (238)
T ss_pred             HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC----
Confidence            33333444444789999999999999999999988 8999999999999999999999988877 99999999776    


Q ss_pred             hhcCCCCCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          139 LKDSENEGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                         ++++.+||+|.+.-   +..+....++++.|.|||||.+++-+...
T Consensus       114 ---Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         114 ---PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             ---CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence               24579999998874   34567889999999999999999877653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.68  E-value=8.7e-16  Score=120.51  Aligned_cols=101  Identities=18%  Similarity=0.241  Sum_probs=88.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..++.+++..+ +++|+++|+++++++.|+++.+..++.+ ++++++|+.+...        .++||
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~fD  114 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEKFD  114 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCCcc
Confidence            478999999999999999998766 7899999999999999999999999865 9999999877421        36899


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|+++. ..++..+++.+.+.|+|||.+++-.
T Consensus       115 lV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        115 VVTSRA-VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            999876 3467889999999999999998763

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.68  E-value=4.2e-16  Score=126.48  Aligned_cols=114  Identities=19%  Similarity=0.272  Sum_probs=83.8

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +..+....++.+|||+|||+|..+..+++..++.++|+++|+++.|++.|++.+...+.. +|+++++|+.+..      
T Consensus        39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp------  111 (233)
T PF01209_consen   39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLP------  111 (233)
T ss_dssp             HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--------
T ss_pred             HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhc------
Confidence            344456677889999999999999999998876889999999999999999999988865 7999999997752      


Q ss_pred             CCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          142 SENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       142 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       +.+++||.|++.-.   ..+....++++.++|||||.+++-+..
T Consensus       112 -~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~  155 (233)
T PF01209_consen  112 -FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFS  155 (233)
T ss_dssp             -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeecc
Confidence             23689999998753   345678999999999999999886654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.67  E-value=7e-16  Score=127.93  Aligned_cols=120  Identities=13%  Similarity=0.173  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh-cCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK-AGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~v~~~~~d~~  132 (237)
                      .+...+++..+... ++++|+|||||.| ++++.++..+.++++++++|.++++++.|++.++. .++.++++|+.+|+.
T Consensus       109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~  187 (296)
T PLN03075        109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM  187 (296)
T ss_pred             HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence            34555566555555 8899999999966 45566665444489999999999999999999965 888889999999998


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeC----CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDA----DKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +..+.       .++||+||+++    .+.....+++.+.+.|+|||++++-..
T Consensus       188 ~~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        188 DVTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             hcccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence            75322       37899999985    346778999999999999999999763

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.67  E-value=3.3e-15  Score=118.56  Aligned_cols=124  Identities=23%  Similarity=0.263  Sum_probs=100.7

Q ss_pred             CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547           50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      +.+.+.+....++...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..+.. +++++.+
T Consensus        20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~   97 (196)
T PRK07402         20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG   97 (196)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC
Confidence            44456677777666666777788999999999999999987665 689999999999999999999988874 6999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+.+.+..+      ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus        98 d~~~~~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402         98 SAPECLAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             chHHHHhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            987755433      245788888764 3457889999999999999998764

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.66  E-value=8.5e-16  Score=122.43  Aligned_cols=135  Identities=19%  Similarity=0.268  Sum_probs=103.4

Q ss_pred             HHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH
Q 026547           36 HLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI  115 (237)
Q Consensus        36 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~  115 (237)
                      .+++++..+...+++  .+++....+...+..  ++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.+++++
T Consensus        10 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~   84 (202)
T PRK00121         10 RLTKGQQRAIEELWP--RLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKI   84 (202)
T ss_pred             ccccchhhhhcccch--hhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHH
Confidence            344556666665554  456666666666655  678999999999999999998876 679999999999999999999


Q ss_pred             HhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEe
Q 026547          116 KKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       116 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +..+. .+++++++|+.+.++...    ..++||.|++.....           ....+++.+.+.|+|||.+++.
T Consensus        85 ~~~~~-~~v~~~~~d~~~~l~~~~----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121         85 EEEGL-TNLRLLCGDAVEVLLDMF----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHcCC-CCEEEEecCHHHHHHHHc----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            88877 469999999944444221    247899998853211           1467899999999999999885

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.66  E-value=4.3e-15  Score=131.34  Aligned_cols=162  Identities=22%  Similarity=0.259  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      .....++..+....++.+|||+|||+|..+.+++..+...++|+++|+++.+++.++++++..|+.+ ++++++|+.+..
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~  316 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLL  316 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcc
Confidence            3445555555666678899999999999999999987656899999999999999999999999864 999999987653


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCCCCcccC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLWGGTVAM  190 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~  190 (237)
                      ....   ...++||.|++|.+.+.                         ..+.++.+.+.|+|||.++...+....    
T Consensus       317 ~~~~---~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~----  389 (434)
T PRK14901        317 ELKP---QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP----  389 (434)
T ss_pred             cccc---cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----
Confidence            2110   01368999999965321                         135688888999999999998876422    


Q ss_pred             CCCCCCccccchHHHHHHHHHHhhcCCCceEE-----eeec---CCceEEEEEcC
Q 026547          191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLS-----HVPL---GDGITICWRIF  237 (237)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~Gl~i~~~~~  237 (237)
                                  ......+...+..+|+|...     +.|-   .+|+.+++.+|
T Consensus       390 ------------~Ene~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k  432 (434)
T PRK14901        390 ------------AENEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK  432 (434)
T ss_pred             ------------hhHHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence                        12234445556678888654     4453   49999997654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=2.1e-15  Score=120.84  Aligned_cols=122  Identities=17%  Similarity=0.295  Sum_probs=107.9

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      -.+.|....++...+...++.+|||.|+|+|..+.+||++..+.++|+++|+.+++++.|++|++..++.+++++..+|.
T Consensus        76 QiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv  155 (256)
T COG2519          76 QIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV  155 (256)
T ss_pred             ceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc
Confidence            34567777788888899999999999999999999999998878999999999999999999999999998899999998


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+...        .+.||.||+|..  +.+++++.+.+.|+|||.+++-...
T Consensus       156 ~~~~~--------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P~  197 (256)
T COG2519         156 REGID--------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSPT  197 (256)
T ss_pred             ccccc--------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence            77643        369999999975  5579999999999999999986544

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.65  E-value=1e-14  Score=128.57  Aligned_cols=125  Identities=21%  Similarity=0.328  Sum_probs=101.2

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+......++..+....++.+|||+|||+|..|.+++..+...++|+++|+++.+++.+++++++.|+. +++++++|+.
T Consensus       220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~  298 (431)
T PRK14903        220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAE  298 (431)
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence            344555566666677778889999999999999999998865789999999999999999999999985 4899999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +.....      .++||.|++|.+.+.                         ..+.++.+.+.|+|||.++...+.+
T Consensus       299 ~l~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        299 RLTEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hhhhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            653222      368999999965422                         1345778889999999999998874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.64  E-value=2.2e-15  Score=114.73  Aligned_cols=108  Identities=26%  Similarity=0.373  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+..+|||+|||+|..+..++....++++++|+|+++++++.|++.+++.+.. +++++++|+.+ ++..    . .++|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~----~-~~~~   74 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQE----L-EEKF   74 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGC----S-STTE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-cccc----c-CCCe
Confidence            35789999999999999999955444889999999999999999999999987 79999999988 4321    0 1699


Q ss_pred             eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|+.....   .....+++.+.++|++||.+++.+..
T Consensus        75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999998643   33457899999999999999998765

...

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.63  E-value=1.7e-15  Score=120.66  Aligned_cols=117  Identities=25%  Similarity=0.327  Sum_probs=91.3

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      ..+.|..-..+..++...++.+|||||||+||.+..++....+.++|++||.++..++.|+++++..+.. +|+++++|.
T Consensus        54 ~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg  132 (209)
T PF01135_consen   54 TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDG  132 (209)
T ss_dssp             EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-G
T ss_pred             echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcch
Confidence            3455666666666777888999999999999999999988776789999999999999999999999975 699999998


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..-++.       ..+||.|++.+.....+   +.+.+.|++||.+|+
T Consensus       133 ~~g~~~-------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~  170 (209)
T PF01135_consen  133 SEGWPE-------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVA  170 (209)
T ss_dssp             GGTTGG-------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEE
T ss_pred             hhcccc-------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEE
Confidence            776554       37999999998766554   346678899999997

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.63  E-value=1.7e-14  Score=128.06  Aligned_cols=125  Identities=21%  Similarity=0.274  Sum_probs=100.8

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+......++..++...++.+|||+|||+|..++++++.++..++|+++|+++.+++.++++++..|+.+ ++++++|+.
T Consensus       233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~  311 (444)
T PRK14902        233 TIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDAR  311 (444)
T ss_pred             EEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcc
Confidence            3445556666666677778899999999999999999987547899999999999999999999999865 999999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +....+      .++||+|++|.+...                         ..++++.+.++|+|||.++...+.+
T Consensus       312 ~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        312 KVHEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             cccchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            764333      268999999975321                         1346888889999999999887654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.63  E-value=4e-15  Score=122.14  Aligned_cols=120  Identities=17%  Similarity=0.223  Sum_probs=100.9

Q ss_pred             cccHHHHHHHHHH---HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547           53 STAPDAGQLMAML---LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        53 ~~~~~~~~~l~~l---~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      .+...+...+..+   +.+.++.+|||||||.|..++++|+.+  +.+|+|+++|++..+.+++.++..|+..+++++..
T Consensus        52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~  129 (283)
T COG2230          52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQ  129 (283)
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEec
Confidence            3444444444444   446788999999999999999999986  57999999999999999999999999889999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |..++          .++||-|+.-     ....+++.||+.+.+.|+|||.++++.+.-
T Consensus       130 d~rd~----------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         130 DYRDF----------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             ccccc----------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            98777          3669999754     246779999999999999999999998864

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.63  E-value=3.9e-14  Score=117.38  Aligned_cols=122  Identities=15%  Similarity=0.215  Sum_probs=96.7

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ......+...+....++.+|||+|||+|..+..++..+...+.|+++|+++.+++.++++++..|+. ++.+++.|+.+.
T Consensus        56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~  134 (264)
T TIGR00446        56 QEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVF  134 (264)
T ss_pred             ECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHh
Confidence            3444444444556667789999999999999999998865689999999999999999999999985 499999998665


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ...       .++||.|++|.+.+.                         ..++++.+.++|+|||.|+...+..
T Consensus       135 ~~~-------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       135 GAA-------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             hhh-------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            321       357999999965432                         1347788889999999999987764

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.61  E-value=9.5e-15  Score=113.32  Aligned_cols=110  Identities=21%  Similarity=0.368  Sum_probs=88.9

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      ++|...+...+.++|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++..++.+ ++++..|..+..+   
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~---   95 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP---   95 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC---
T ss_pred             HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc---
Confidence            3444444444788999999999999999999877 6789999999999999999999999877 9999999876543   


Q ss_pred             hcCCCCCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEE
Q 026547          140 KDSENEGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~  179 (237)
                           .++||+|+++.+..        ....+++.+.+.|+|||.+++
T Consensus        96 -----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 -----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             -----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence                 48999999985421        245778888899999998854

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.61  E-value=1.6e-14  Score=119.46  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=88.8

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh--cCCCCcEEEEeccchHHHHHHhhc
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK--AGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      .+....++.+|||+|||+|..+..+++..++.++|+++|++++|++.|+++...  .+..++++++++|+.+. +     
T Consensus        67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p-----  140 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P-----  140 (261)
T ss_pred             HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C-----
Confidence            344556778999999999999999988765467999999999999999876542  22234699999998664 1     


Q ss_pred             CCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          142 SENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       142 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       +..++||+|++...   ..+...+++++.+.|+|||.+++.+..
T Consensus       141 -~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        141 -FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             -CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence             22578999987643   345678999999999999999887765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.61  E-value=1.1e-14  Score=120.11  Aligned_cols=103  Identities=18%  Similarity=0.232  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++++..|+.++++++++|+.+..+..      .++|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV  113 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence            45679999999999999999984   56999999999999999999999888788999999998764322      4789


Q ss_pred             eEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|++...   ..+...+++.+.++|+|||.+++.
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            99998754   234568899999999999999764

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.60  E-value=2.4e-14  Score=116.37  Aligned_cols=113  Identities=18%  Similarity=0.353  Sum_probs=91.6

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +.......++.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..+. ++++++++|+.+..      
T Consensus        37 ~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~------  109 (231)
T TIGR02752        37 TMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP------  109 (231)
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC------
Confidence            33444555678999999999999999998876578999999999999999999988776 56999999987642      


Q ss_pred             CCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          142 SENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       142 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ...++||+|++...   ..++..+++.+.+.|+|||.+++.+.
T Consensus       110 -~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       110 -FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             -CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence             12478999987643   34567889999999999999987543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.60  E-value=5.9e-15  Score=122.39  Aligned_cols=109  Identities=21%  Similarity=0.310  Sum_probs=85.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +.+.++.+|||||||.|..+.++++..  +++|++|.+|++..+.+++.+++.|+.+++++..+|..++          .
T Consensus        58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----------~  125 (273)
T PF02353_consen   58 LGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----------P  125 (273)
T ss_dssp             TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----------C
Confidence            346788899999999999999999975  5799999999999999999999999999999999998765          3


Q ss_pred             CceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          146 GSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       146 ~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      .+||.|+.-.     ...+++.+|+.+.++|+|||.++++.+....
T Consensus       126 ~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  126 GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             -S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            6999997543     3456789999999999999999998776433

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.60  E-value=5.2e-14  Score=124.83  Aligned_cols=121  Identities=23%  Similarity=0.229  Sum_probs=96.4

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ......+...+....++.+|||+|||+|..+.+++..++..++|+++|+++.+++.+++++++.|+. +++++++|+.+.
T Consensus       235 qd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~  313 (445)
T PRK14904        235 QNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSF  313 (445)
T ss_pred             eCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccc
Confidence            3334444445555667789999999999999999988765679999999999999999999999985 599999998765


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .+        ..+||.|++|.+.+.                         ...+++.+.+.|+|||.+++..+..
T Consensus       314 ~~--------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        314 SP--------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             cc--------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            32        368999999854311                         1246888889999999999988764

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.60  E-value=4.2e-14  Score=124.80  Aligned_cols=124  Identities=19%  Similarity=0.210  Sum_probs=96.6

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ......++..+....++.+|||+|||+|+.+.++++.++ .++|+++|+++.+++.++++++..|+..++.+..+|..+.
T Consensus       223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~  301 (426)
T TIGR00563       223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP  301 (426)
T ss_pred             ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence            344555666666777788999999999999999999887 7899999999999999999999999864455577776543


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ....     ..++||.|++|++.+.                         ...+++.++++|+|||.+++..+.+
T Consensus       302 ~~~~-----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       302 SQWA-----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cccc-----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            2100     1368999999864322                         1357888889999999999998875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.59  E-value=7.1e-14  Score=110.73  Aligned_cols=106  Identities=21%  Similarity=0.322  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+...+||||||+|..+..+++..| +..|+++|+++.+++.|++++...++. +++++++|+.+.+....    ..+++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~   88 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSL   88 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCce
Confidence            3566999999999999999999887 789999999999999999999988875 69999999988765442    13589


Q ss_pred             eEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |.|+++.+...           ...+++.+.+.|+|||.+++.
T Consensus        89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            99998743211           257899999999999999874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00811 spermidine synthase; Provisional

Probab=99.59  E-value=6.7e-14  Score=117.01  Aligned_cols=106  Identities=20%  Similarity=0.257  Sum_probs=87.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C--CCcEEEEeccchHHHHHHhhcCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V--DHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..++++||+||||.|..+.+++++.+ ..+|++||+++.+++.|++++...+  .  .++++++.+|+.+++...     
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  147 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----  147 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence            35788999999999999999987633 5699999999999999999987543  2  468999999999987652     


Q ss_pred             CCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       .++||+|++|.....       ..++++.+.+.|+|||++++.
T Consensus       148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             478999999863221       267889999999999999975

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.59  E-value=3.9e-14  Score=113.73  Aligned_cols=114  Identities=21%  Similarity=0.279  Sum_probs=92.6

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+.+.....+..++...++.+|||+|||+|+.+..+++..   .+|+++|+++++++.++++++..++.+ ++++++|+.
T Consensus        61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~  136 (212)
T PRK00312         61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW  136 (212)
T ss_pred             eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence            3566776777777777788899999999999999888753   489999999999999999999988754 999999986


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +.++.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       137 ~~~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        137 KGWPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             cCCCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            54331       3789999998765443   45677899999999885

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.59  E-value=2.3e-14  Score=116.53  Aligned_cols=131  Identities=20%  Similarity=0.287  Sum_probs=99.5

Q ss_pred             HHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC
Q 026547           43 VTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH  122 (237)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  122 (237)
                      ++....+.--.+.+....++.....+.++.+|||.|+|+|..+.+|++.+.+.++|++.|..++.++.|+++++..|+.+
T Consensus        13 ~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~   92 (247)
T PF08704_consen   13 WTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDD   92 (247)
T ss_dssp             HHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred             HHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCC
Confidence            34444333334677888888888899999999999999999999999998879999999999999999999999999988


Q ss_pred             cEEEEeccchH-HHH-HHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccC-CCCeEEEEeC
Q 026547          123 KINFIESEALS-VLD-QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLL-KVGGIAVYDN  181 (237)
Q Consensus       123 ~v~~~~~d~~~-~~~-~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~~  181 (237)
                      +|++.+.|..+ -.. .+      ...+|.||+|...+  ...+..+.+.| ++||.|++-.
T Consensus        93 ~v~~~~~Dv~~~g~~~~~------~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen   93 NVTVHHRDVCEEGFDEEL------ESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             TEEEEES-GGCG--STT-------TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEE
T ss_pred             CceeEecceecccccccc------cCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEEC
Confidence            99999999853 221 11      36899999997644  56788888999 8999998743

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.59  E-value=1.2e-13  Score=115.62  Aligned_cols=119  Identities=13%  Similarity=0.246  Sum_probs=92.7

Q ss_pred             ccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547           54 TAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ..+.++.++...+.    ..++.+|||+|||+|..++.+++..+ +.+|+++|+++.+++.|+++++..++.++++++++
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~  179 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS  179 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            34556666655433    23457999999999999999999876 78999999999999999999999998778999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |..+.++        .++||+|+++.+.                            ..+..+++.+.+.|+|||.+++.-
T Consensus       180 D~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       180 DLFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             chhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            9865432        3589999987321                            012456777778999999999863

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.59  E-value=7.1e-14  Score=123.36  Aligned_cols=123  Identities=22%  Similarity=0.257  Sum_probs=96.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......+...++...++.+|||+|||+|..+.++++..+ +++|+++|+++.+++.++++++..|+.  ++++++|+.+
T Consensus       228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~  304 (427)
T PRK10901        228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD  304 (427)
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence            3444455555666677788999999999999999999876 589999999999999999999998874  7889999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .....     ..++||.|++|.+...                         ...+++.+.+.|+|||.+++..+..
T Consensus       305 ~~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        305 PAQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             chhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            43211     1368999999875321                         1257888889999999999987754

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.58  E-value=9.9e-14  Score=108.58  Aligned_cols=156  Identities=19%  Similarity=0.273  Sum_probs=121.0

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~--~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .|..++|+..|+...+.+.++|++|+.|.  .++.|+.+. ..+++++||.++++.+...++.+...+..+.++|+.++.
T Consensus        26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~  105 (218)
T PF07279_consen   26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA  105 (218)
T ss_pred             CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence            57789999999999999999999887553  344444332 237899999999999989999999999888789999985


Q ss_pred             -hHHHHHHhhcCCCCCceeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHH
Q 026547          132 -LSVLDQLLKDSENEGSFDYAFVDADKVNYW-NYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDL  209 (237)
Q Consensus       132 -~~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  209 (237)
                       .+.++.+       ...|++++|+...++. .+|+.+ ++-+.|.++|+.|.+.++.                 .--.|
T Consensus       106 ~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~-----------------~~~~w  160 (218)
T PF07279_consen  106 PEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST-----------------NGFSW  160 (218)
T ss_pred             HHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc-----------------CCccH
Confidence             4577665       7899999999887777 666654 5556778888899864321                 01134


Q ss_pred             HHHhhcCCCceEEeeecCCceEEEEE
Q 026547          210 NRSLADDPRIQLSHVPLGDGITICWR  235 (237)
Q Consensus       210 ~~~l~~~~~~~~~~lp~~~Gl~i~~~  235 (237)
                      ...+...+.+.+++||+|.||.+++-
T Consensus       161 ~~~~~~~r~Vrsv~LPIG~GleVt~i  186 (218)
T PF07279_consen  161 RSVLRGRRVVRSVFLPIGKGLEVTRI  186 (218)
T ss_pred             HHhcCCCCceeEEEeccCCCeEEEEE
Confidence            45556678899999999999999874

The function of this family is unknown.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.58  E-value=2.7e-14  Score=103.66  Aligned_cols=102  Identities=23%  Similarity=0.415  Sum_probs=85.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.+|||+|||+|..++.+++..  ..+++++|+++..++.++.++...+..++++++++|..+..+.+     ...+||+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~   73 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL   73 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence            3589999999999999999875  47999999999999999999999998888999999998876433     2589999


Q ss_pred             EEEeCCCc-----------CcHHHHHHHHccCCCCeEEEE
Q 026547          151 AFVDADKV-----------NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       151 i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |+.+.+-.           .+..+++.+.++|+|||++++
T Consensus        74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            99985422           136789999999999999876

...

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.57  E-value=2.6e-15  Score=107.39  Aligned_cols=102  Identities=30%  Similarity=0.561  Sum_probs=51.3

Q ss_pred             EEEcccccHHHHHHHhhCCCCC--EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           75 IEIGVFTGYSLLLTALTIPEDG--QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        75 LeiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      ||||+..|.++++++++++++.  +++++|..+. .+.+++.+++.++.+++++++++..+.++.+.     .++||+|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence            7999999999999999887654  7999999986 44556666667777789999999999988773     27999999


Q ss_pred             EeCCC--cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          153 VDADK--VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       153 id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|+.+  +.....++.+++.|+|||+|++||+
T Consensus        75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            99976  4456788999999999999999984

>PLN02244 tocopherol O-methyltransferase

Probab=99.57  E-value=4.8e-14  Score=120.93  Aligned_cols=106  Identities=16%  Similarity=0.220  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||||||+|..+..+++..  +.+|+++|+++.+++.++++.+..++.++++++++|+.+..       +..++|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-------~~~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-------FEDGQF  187 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-------CCCCCc
Confidence            456799999999999999999865  56999999999999999999988888778999999987641       225799


Q ss_pred             eEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++...   ..+...+++++.++|+|||.+++.+..
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99987543   234568999999999999999987643

>PRK01581 speE spermidine synthase; Validated

Probab=99.56  E-value=1.3e-13  Score=116.95  Aligned_cols=109  Identities=17%  Similarity=0.199  Sum_probs=87.0

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH--H---hcCC-CCcEEEEeccchHHHHHHh
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI--K---KAGV-DHKINFIESEALSVLDQLL  139 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~--~---~~~~-~~~v~~~~~d~~~~~~~~~  139 (237)
                      ....++++||+||||.|+.+..++++.+ ..+|++||+++++++.|+++.  .   ...+ .++++++.+|+.+++... 
T Consensus       146 ~~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-  223 (374)
T PRK01581        146 SKVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-  223 (374)
T ss_pred             HhCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence            3456789999999999998888887533 679999999999999999732  1   1122 478999999999988754 


Q ss_pred             hcCCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                           .++||+|++|.....        ..++++.+.+.|+|||++++..
T Consensus       224 -----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        224 -----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             -----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence                 478999999964221        2578999999999999998863

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.55  E-value=4.4e-14  Score=114.08  Aligned_cols=118  Identities=20%  Similarity=0.305  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ...+-+|..++.....++|||+|||+|..++.+|...+ ..+|++||+++++++.|+++++.+++.++++++++|..++.
T Consensus        30 ~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~  108 (248)
T COG4123          30 GTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL  108 (248)
T ss_pred             ccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence            34566788888888899999999999999999999876 58999999999999999999999999999999999999887


Q ss_pred             HHHhhcCCCCCceeEEEEeCC-----C----------------cCcHHHHHHHHccCCCCeEEEE
Q 026547          136 DQLLKDSENEGSFDYAFVDAD-----K----------------VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~-----~----------------~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +..     ...+||+|+++.+     .                ....++++.+.++|++||.+.+
T Consensus       109 ~~~-----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         109 KAL-----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             hcc-----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence            765     2457999998732     1                1246788888899999999876

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.55  E-value=6.7e-14  Score=114.98  Aligned_cols=106  Identities=15%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|..+..+++.+ .++.+|+++|+++.+++.|+++++..+...+++++++|+.+..         ...
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence            466799999999999999988753 2378999999999999999999998887778999999986642         256


Q ss_pred             eeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +|+|++....     .....+++++.+.|+|||.+++.+..
T Consensus       126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            8988764321     12357899999999999999997754

>TIGR00740 methyltransferase, putative

Probab=99.54  E-value=1.6e-13  Score=112.22  Aligned_cols=107  Identities=12%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++.+|||+|||+|..+..+++.++ ++.+++++|+++.+++.|+++++..+...+++++++|+.+..         ..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  122 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN  122 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence            3567999999999999999998753 378999999999999999999988776667999999987652         256


Q ss_pred             eeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +|+|++.....     +...+++.+.+.|+|||.+++.+...
T Consensus       123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            88887654322     23578999999999999999987653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.54  E-value=1.1e-13  Score=116.85  Aligned_cols=117  Identities=15%  Similarity=0.260  Sum_probs=91.1

Q ss_pred             cHHHHHHHHHHHh-h-c--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547           55 APDAGQLMAMLLK-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE  130 (237)
Q Consensus        55 ~~~~~~~l~~l~~-~-~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (237)
                      .+.+..++..... . .  ++.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++..++.++++++++|
T Consensus       114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            3455555554332 1 1  236899999999999999998876 789999999999999999999999987789999999


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+.++        .++||+|+++.+.                            ..+..+++.+.+.|+|||.+++.
T Consensus       193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            866432        2589999987321                            01245677788999999999985

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.54  E-value=1.2e-13  Score=115.03  Aligned_cols=113  Identities=18%  Similarity=0.297  Sum_probs=91.7

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +...++.+|||+|||+|..+..+++.....++|+++|+++.+++.|+++.+..+.. +++++.+|+.+. +      ...
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~------~~~  144 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P------VAD  144 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C------CCC
Confidence            44567889999999999998888877655679999999999999999999888874 689999997553 1      124


Q ss_pred             CceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          146 GSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       146 ~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      ++||+|+.+..   ..+....++++.++|+|||.+++.++...+
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            68999987653   234567899999999999999998876543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.53  E-value=6.1e-14  Score=111.65  Aligned_cols=116  Identities=17%  Similarity=0.216  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           56 PDAGQLMAMLLKL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        56 ~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      +....++...+..   ..+.+|||+|||-|..+..+|+.   +..|+++|++++.++.|+.+..+.|+.  +++.+..++
T Consensus        42 ~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~e  116 (243)
T COG2227          42 PLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVE  116 (243)
T ss_pred             cchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHH
Confidence            3333344444443   47889999999999999999984   689999999999999999999998874  778888887


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +....       .++||+|++-..   ..+...+++.|.+++||||.++++.+.
T Consensus       117 dl~~~-------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin  163 (243)
T COG2227         117 DLASA-------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN  163 (243)
T ss_pred             HHHhc-------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence            76542       379999987643   445678999999999999999999885

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.53  E-value=1.3e-13  Score=109.48  Aligned_cols=101  Identities=17%  Similarity=0.202  Sum_probs=81.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.+++..+..++. ++++.+.|..+..  +      .+
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~------~~   94 (197)
T PRK11207         27 KVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F------DG   94 (197)
T ss_pred             ccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c------CC
Confidence            3446789999999999999999974   569999999999999999999888874 4888888876541  1      36


Q ss_pred             ceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +||+|++....     .....+++.+.++|+|||.+++
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            79999876432     2346889999999999998544

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.52  E-value=7.1e-14  Score=113.05  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=87.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      ++|||||||+|..+..+++..+ +.+|+++|+++++++.++++++..|+.++++++.+|..+..  .      .++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~------~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F------PDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C------CCCCCEe
Confidence            4799999999999999998876 67999999999999999999999998889999999875431  1      3689999


Q ss_pred             EEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          152 FVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       152 ~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +...   ...+...+++.+.++|+|||.+++.+..
T Consensus        72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            8642   2345678999999999999999998764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.52  E-value=1e-13  Score=117.32  Aligned_cols=104  Identities=18%  Similarity=0.144  Sum_probs=85.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||||||+|..+..+++.   +.+|++||+++++++.|+++.+..+...+++++++++.+...       ..++||
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD  200 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD  200 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence            4569999999999999999863   679999999999999999887665555579999999866521       147899


Q ss_pred             EEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          150 YAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +|++...   ..+...+++.+.++|+|||.+++....
T Consensus       201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9997543   345678999999999999999998654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.52  E-value=1.9e-13  Score=108.34  Aligned_cols=103  Identities=17%  Similarity=0.163  Sum_probs=80.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .+...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++.+..++.  +++..+|.... + +      
T Consensus        25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~------   91 (195)
T TIGR00477        25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L------   91 (195)
T ss_pred             HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c------
Confidence            334556789999999999999999974   569999999999999999988877763  77777776432 1 1      


Q ss_pred             CCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .++||+|++...-     .....+++.+.++|+|||.+++-
T Consensus        92 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        92 NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            3689999865321     23467899999999999985553

Part of a tellurite-reducing operon tehA and tehB

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.52  E-value=2.8e-13  Score=117.85  Aligned_cols=111  Identities=20%  Similarity=0.326  Sum_probs=89.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++++|||+|||+|..++..+..  ...+|+++|+++.+++.|+++++.+++. ++++++++|+.+++..+...   .
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~  291 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---G  291 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---C
Confidence            3457889999999999998876642  2459999999999999999999999986 47999999999988766432   3


Q ss_pred             CceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ++||+|++|.+.            ..+..+++.+.++|+|||++++..+
T Consensus       292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            689999999653            1245566677899999999997654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.52  E-value=7.7e-14  Score=96.98  Aligned_cols=92  Identities=23%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547           75 IEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD  154 (237)
Q Consensus        75 LeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  154 (237)
                      ||+|||+|..+..+++. + ..+|+++|+++++++.+++.....    .+.++++|+.+. +      +.+++||+|++.
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~------~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P------FPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S------S-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c------cccccccccccc
Confidence            89999999999999987 3 789999999999999999987543    366899998776 2      236899999987


Q ss_pred             CCC---cCcHHHHHHHHccCCCCeEEEE
Q 026547          155 ADK---VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       155 ~~~---~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ...   .+...+++++.+.|||||.+++
T Consensus        68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 SVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            532   4567899999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.51  E-value=2.5e-13  Score=114.94  Aligned_cols=115  Identities=21%  Similarity=0.349  Sum_probs=89.5

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      .+.....+...+...++.+|||+|||+|+.+..+++..+..++|+++|+++++++.|+++++..|. +++.++++|+.+.
T Consensus        65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~  143 (322)
T PRK13943         65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYG  143 (322)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhc
Confidence            344333444444566778999999999999999998876457899999999999999999999887 4699999998765


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .+.       ..+||+|+++....+.   .+.+.+.|+|||.+++.
T Consensus       144 ~~~-------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        144 VPE-------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ccc-------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence            432       2679999998654443   34567889999998874

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.50  E-value=1.8e-13  Score=113.05  Aligned_cols=99  Identities=22%  Similarity=0.308  Sum_probs=82.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||||||+|..+..++...+ +.+|+++|+++.+++.+++++      ++++++.+|+.+..+        ..
T Consensus        28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~   92 (258)
T PRK01683         28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQ   92 (258)
T ss_pred             CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CC
Confidence            445678999999999999999998876 789999999999999998864      358899999865421        36


Q ss_pred             ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +||+|++...   ..+...+++.+.+.|+|||.+++.
T Consensus        93 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         93 ALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             CccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            8999998753   334578899999999999999885

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.50  E-value=2.8e-13  Score=113.66  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++++|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++..++.+++.+..++....         ..++|
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---------~~~~f  226 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---------IEGKA  226 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---------cCCCc
Confidence            46689999999999999888764 3 4599999999999999999999988877777777763221         14789


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|+.+........++..+.+.|+|||.+++..+.
T Consensus       227 DlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       227 DVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             eEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            99998876666678889999999999999998764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00417 speE spermidine synthase

Probab=99.50  E-value=1.5e-12  Score=108.34  Aligned_cols=106  Identities=21%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC---CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV---DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++||+||||+|..+..++++.+ ..+++++|+++++++.+++++...+.   .++++++.+|+.+++...      
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------  142 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence            44678999999999999988887653 56899999999999999998865431   357899999998887654      


Q ss_pred             CCceeEEEEeCCCc-----C--cHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKV-----N--YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .++||+|++|....     .  ..++++.+.+.|+|||++++.
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            47999999986421     1  357889999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.50  E-value=7.2e-14  Score=98.99  Aligned_cols=93  Identities=20%  Similarity=0.363  Sum_probs=73.0

Q ss_pred             EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           74 TIEIGVFTGYSLLLTALTIPE--DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      |||+|||+|..+..++..++.  ..+++++|+++++++.++++....+.  +++++++|+.++. ..      .++||+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~-~~------~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLP-FS------DGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHH-HH------SSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCc-cc------CCCeeEE
Confidence            799999999999999988732  37999999999999999999988665  6899999997753 22      4799999


Q ss_pred             EEeCC------CcCcHHHHHHHHccCCCCe
Q 026547          152 FVDAD------KVNYWNYHERLMKLLKVGG  175 (237)
Q Consensus       152 ~id~~------~~~~~~~~~~~~~~L~~gG  175 (237)
                      ++...      ......+++++.++|+|||
T Consensus        72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            98432      2234678999999999998

>PLN02366 spermidine synthase

Probab=99.50  E-value=4.1e-13  Score=113.04  Aligned_cols=108  Identities=19%  Similarity=0.284  Sum_probs=89.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++||+||||.|..+.+++++ +...+|+.+|+++.+++.+++++...+  + +++++++.+|+.+++....     
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~-----  162 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP-----  162 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-----
Confidence            457899999999999999999887 435799999999999999999987542  2 4689999999999886531     


Q ss_pred             CCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++||+|++|.....       ..++++.+.+.|+|||+++...
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            368999999965422       3578999999999999998753

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.49  E-value=1.3e-12  Score=102.10  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=84.8

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      .++.......++++|||+|||+|..+..++...   .+|+++|+++.+++.++++++..+.  +++++.+|..+..    
T Consensus         9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~----   79 (179)
T TIGR00537         9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV----   79 (179)
T ss_pred             HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence            444444556677899999999999999998753   3899999999999999999987775  4888999876542    


Q ss_pred             hcCCCCCceeEEEEeCCCc------------------------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDADKV------------------------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                           .++||+|+.+....                        ....+++.+.++|+|||.+++..
T Consensus        80 -----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        80 -----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             -----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                 36899999874311                        03467888889999999988754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.49  E-value=1.3e-13  Score=107.50  Aligned_cols=102  Identities=22%  Similarity=0.234  Sum_probs=87.6

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .+...++.+|+|+|||.|.+|..+++..| .+.|+|+|-|++|++.|++.+      ++++|..+|+.++-+        
T Consensus        25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------   89 (257)
T COG4106          25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------   89 (257)
T ss_pred             hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------
Confidence            34556788999999999999999999998 899999999999999998765      468999999988743        


Q ss_pred             CCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..+.|++|.++.   ..+....|.++...|.|||+|.+.=
T Consensus        90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm  129 (257)
T COG4106          90 EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM  129 (257)
T ss_pred             CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence            478999998754   4556788999999999999999863

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.49  E-value=5.8e-13  Score=111.57  Aligned_cols=118  Identities=19%  Similarity=0.315  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhh---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           56 PDAGQLMAMLLKL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        56 ~~~~~~l~~l~~~---~~~-~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      +.+..++......   .++ .+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++..++.++++++++|.
T Consensus        96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~  174 (284)
T TIGR00536        96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL  174 (284)
T ss_pred             CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            4455555443321   223 6899999999999999999876 7899999999999999999999998877799999998


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+.++        ..+||+|+.+.+.                            ..+..+++.+.+.|+|||++++.-.
T Consensus       175 ~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       175 FEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             hccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence            66432        2489999986210                            0134567777789999999998643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK04266 fibrillarin; Provisional

Probab=99.49  E-value=3.7e-13  Score=108.76  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=86.9

Q ss_pred             HHHHHHHH--HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           58 AGQLMAML--LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        58 ~~~~l~~l--~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ...++..+  +...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.++.+..   +++.++.+|+.+..
T Consensus        58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~  133 (226)
T PRK04266         58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPE  133 (226)
T ss_pred             HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcc
Confidence            34444434  5566788999999999999999999886 789999999999999887766543   45889999986521


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ....    ..++||+|+.+....+ ....++.+.+.|+|||.+++. +.|
T Consensus       134 ~~~~----l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~  178 (226)
T PRK04266        134 RYAH----VVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKA  178 (226)
T ss_pred             hhhh----ccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eec
Confidence            1110    1357999998764322 234578999999999999985 444

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.49  E-value=4.4e-13  Score=115.54  Aligned_cols=102  Identities=14%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ...+|||+|||+|..++.+++..| ..+|+++|.++.+++.++++++.++..  .+++++.+|+...++        .++
T Consensus       228 ~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~  298 (378)
T PRK15001        228 LEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFR  298 (378)
T ss_pred             cCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCC
Confidence            346999999999999999999877 789999999999999999999877643  368999988755421        358


Q ss_pred             eeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|+++.+-.        ...++|+.+.+.|+|||.+.+.
T Consensus       299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            99999974321        1346788889999999988775

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.49  E-value=2.1e-13  Score=112.51  Aligned_cols=97  Identities=14%  Similarity=0.088  Sum_probs=80.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|++.        +++++++|+.+..+        .+
T Consensus        26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~   88 (255)
T PRK14103         26 GAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KP   88 (255)
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CC
Confidence            345678999999999999999998876 78999999999999988762        37889999865421        37


Q ss_pred             ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +||+|++...   ..+....++++.+.|+|||.+++.
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            8999998753   345578899999999999999885

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.48  E-value=2e-12  Score=102.43  Aligned_cols=119  Identities=13%  Similarity=0.101  Sum_probs=89.2

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .+.....++..+....++.+|||+|||+|..++.++...  ..+|+++|.+++.++.++++++..+.. +++++++|+.+
T Consensus        37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~  113 (199)
T PRK10909         37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALS  113 (199)
T ss_pred             CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHH
Confidence            344444455555554567899999999999998654432  359999999999999999999999874 69999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC-CcC-cHHHHHHHHc--cCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDAD-KVN-YWNYHERLMK--LLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~-~~~-~~~~~~~~~~--~L~~gG~lv~~~  181 (237)
                      .++..      ..+||+||+|.+ ... ....++.+.+  +|++++++++..
T Consensus       114 ~l~~~------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        114 FLAQP------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             HHhhc------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence            76432      357999999987 333 3455555553  478999999864

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.47  E-value=1.1e-12  Score=112.82  Aligned_cols=103  Identities=24%  Similarity=0.303  Sum_probs=87.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      .+..+||||||+|..++.+|+..| +..++|+|+++.+++.+.+.+...++. ++.++++|+.+.+..+     ..+++|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D  194 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVE  194 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCcee
Confidence            456899999999999999999987 789999999999999999999988885 4999999998766543     258999


Q ss_pred             EEEEeCCCcC---------cHHHHHHHHccCCCCeEEEE
Q 026547          150 YAFVDADKVN---------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       150 ~i~id~~~~~---------~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .|++..+.+.         ...+++.+.+.|+|||.+.+
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            9998753221         25789999999999999887

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=4.3e-13  Score=111.12  Aligned_cols=126  Identities=18%  Similarity=0.224  Sum_probs=96.9

Q ss_pred             hCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547           46 DHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN  125 (237)
Q Consensus        46 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  125 (237)
                      +.+-+.-+......+.|..+..  ++++|||+|||+|..++..++.-  ..+|+++|++|..++.+++|.+.+++...++
T Consensus       140 AFGTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~  215 (300)
T COG2264         140 AFGTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQ  215 (300)
T ss_pred             ccCCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence            4444555556666777776655  78899999999999999888753  3579999999999999999999998865344


Q ss_pred             EEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          126 FIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       126 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ....+..+...        .++||+|+.+.-..-...+...+.++++|||.++++.++
T Consensus       216 ~~~~~~~~~~~--------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         216 AKGFLLLEVPE--------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             cccccchhhcc--------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence            44444433322        369999998865555667888888999999999999876

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.47  E-value=5.6e-13  Score=112.86  Aligned_cols=111  Identities=13%  Similarity=0.043  Sum_probs=90.3

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..+...+..+|||||||+|..++.+++..| +.+++++|. +.+++.+++++++.|+.++++++.+|+.+..        
T Consensus       143 ~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--------  212 (306)
T TIGR02716       143 EEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--------  212 (306)
T ss_pred             HHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--------
Confidence            334455678999999999999999999987 789999997 7899999999999999889999999986531        


Q ss_pred             CCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          144 NEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       144 ~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                       .+.+|+|++.....     .....++++.+.|+|||.+++.+..+.
T Consensus       213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~  258 (306)
T TIGR02716       213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID  258 (306)
T ss_pred             -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence             13479987654322     224689999999999999999887664

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK08317 hypothetical protein; Provisional

Probab=99.45  E-value=5.2e-12  Score=102.61  Aligned_cols=115  Identities=18%  Similarity=0.277  Sum_probs=90.0

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           63 AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ...+...++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++...  ...+++++.+|+.+..  +    
T Consensus        12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~d~~~~~--~----   83 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRGDADGLP--F----   83 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEecccccCC--C----
Confidence            3445566778999999999999999998874478999999999999999987332  2356889998875531  1    


Q ss_pred             CCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          143 ENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       143 ~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                       ..++||+|++...   ..+...+++.+.+.|+|||.+++....+..
T Consensus        84 -~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  129 (241)
T PRK08317         84 -PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDT  129 (241)
T ss_pred             -CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCc
Confidence             2478999997643   345678999999999999999998765543

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.45  E-value=8.3e-13  Score=123.02  Aligned_cols=111  Identities=18%  Similarity=0.289  Sum_probs=91.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +....++++|||+|||+|..+++++..-  ..+|++||+++.+++.|+++++.+|+. ++++++++|+.+++..+     
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----  605 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----  605 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence            3445578899999999999999999852  347999999999999999999999986 68999999999987654     


Q ss_pred             CCCceeEEEEeCCC--------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          144 NEGSFDYAFVDADK--------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       144 ~~~~~D~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       ..+||+|++|.+.              ..+..+++.+.++|+|||++++....
T Consensus       606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             3689999999642              12456778888999999999887543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.45  E-value=1e-12  Score=108.90  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=84.6

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....++.+|||||||+|..+..++...  +.+|+++|+++.+++.+++++..   .+++.+.++|+.+.       +...
T Consensus        48 l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-------~~~~  115 (263)
T PTZ00098         48 IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-------DFPE  115 (263)
T ss_pred             CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-------CCCC
Confidence            355677899999999999999998753  56999999999999999987643   35799999998643       1224


Q ss_pred             CceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          146 GSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       146 ~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ++||+|++...     ..+...+++++.++|+|||.+++.+...
T Consensus       116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            78999997421     1255789999999999999999987654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.45  E-value=6e-12  Score=103.56  Aligned_cols=107  Identities=18%  Similarity=0.253  Sum_probs=82.3

Q ss_pred             HHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           60 QLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        60 ~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..+..+.. ..++.+|||+|||+|..++.+++. . ..+|+++|+++.+++.|+++++..++..++.+..++        
T Consensus       108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------  177 (250)
T PRK00517        108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------  177 (250)
T ss_pred             HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------
Confidence            33444443 347789999999999999887764 2 347999999999999999999988875444433221        


Q ss_pred             hhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          139 LKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                             .+||+|+.+........+++.+.+.|+|||.+++..+.
T Consensus       178 -------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        178 -------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             -------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                   37999998776555677888999999999999998654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.45  E-value=6.9e-13  Score=102.92  Aligned_cols=124  Identities=19%  Similarity=0.294  Sum_probs=83.9

Q ss_pred             hhCCCCCccccHHHHHHHHHHH-hhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC
Q 026547           45 ADHPRAMMSTAPDAGQLMAMLL-KLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD  121 (237)
Q Consensus        45 ~~~~~~~~~~~~~~~~~l~~l~-~~~~~--~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  121 (237)
                      ..++|.+-....+..+.-..+. ...++  .++||+|||.|..|..||...   .+++++|+++..++.|+++++..   
T Consensus        15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~---   88 (201)
T PF05401_consen   15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL---   88 (201)
T ss_dssp             SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---
Confidence            3555554433333333322332 23333  599999999999999999864   59999999999999999988653   


Q ss_pred             CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          122 HKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       122 ~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ++|++++.+..+..+        .++||+|++...      ......+++.+...|+|||.+|+...
T Consensus        89 ~~V~~~~~dvp~~~P--------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen   89 PHVEWIQADVPEFWP--------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             SSEEEEES-TTT-----------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCeEEEECcCCCCCC--------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            469999999988765        589999998742      12345678888899999999999654

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.44  E-value=3.1e-12  Score=106.60  Aligned_cols=147  Identities=18%  Similarity=0.208  Sum_probs=94.6

Q ss_pred             CCcHHHHHHHh---hccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026547           15 LQSEELYRYIL---ETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT   91 (237)
Q Consensus        15 ~~~~~~~~y~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~   91 (237)
                      ...+-+.+++.   +.+..+.++..+-+.+....+.+... .+.....+.+..... .+..+|||+|||+|+.+..++..
T Consensus        29 ~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~fl~~g~y~-~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~  106 (272)
T PRK11088         29 CAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAFLDAGHYQ-PLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADA  106 (272)
T ss_pred             cccCceEEeccccccCCCCCCcCHHHHHHHHHHHHCCChH-HHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHh
Confidence            33344445543   23334455555555565555544321 122222233322221 24568999999999999999887


Q ss_pred             CCCC--CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHc
Q 026547           92 IPED--GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK  169 (237)
Q Consensus        92 ~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~  169 (237)
                      ++..  ..++|+|+++.+++.|++..      +++.+.++|+.+. +      +..++||+|+.....    ..++++.+
T Consensus       107 ~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p------~~~~sfD~I~~~~~~----~~~~e~~r  169 (272)
T PRK11088        107 LPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P------FADQSLDAIIRIYAP----CKAEELAR  169 (272)
T ss_pred             cccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C------CcCCceeEEEEecCC----CCHHHHHh
Confidence            6532  37999999999999987753      3578889987653 1      125799999865432    34577889


Q ss_pred             cCCCCeEEEEe
Q 026547          170 LLKVGGIAVYD  180 (237)
Q Consensus       170 ~L~~gG~lv~~  180 (237)
                      .|+|||.+++.
T Consensus       170 vLkpgG~li~~  180 (272)
T PRK11088        170 VVKPGGIVITV  180 (272)
T ss_pred             hccCCCEEEEE
Confidence            99999999875

>PLN02823 spermine synthase

Probab=99.44  E-value=1.4e-12  Score=110.99  Aligned_cols=106  Identities=18%  Similarity=0.190  Sum_probs=87.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC---CCCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG---VDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++||.||+|.|..+.+++++.+ ..+|+.||+++..++.+++++...+   ..++++++.+|+.+++...      
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------  173 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------  173 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence            34688999999999999999888644 5689999999999999999986432   2478999999999998643      


Q ss_pred             CCceeEEEEeCCCc---------CcHHHHH-HHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKV---------NYWNYHE-RLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~---------~~~~~~~-~~~~~L~~gG~lv~~  180 (237)
                      .++||+||+|....         ...++++ .+.+.|+|||++++.
T Consensus       174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            47899999995321         1357888 899999999999875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=1.1e-12  Score=110.20  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=80.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++++|||+|||+|..+.+++..   +.+|+++|+++.+++.++++.+..++  ++++...|..+..  +      .++
T Consensus       118 ~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~~  184 (287)
T PRK12335        118 TVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QEE  184 (287)
T ss_pred             ccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cCC
Confidence            346679999999999999999873   57999999999999999999988887  5888888775431  1      378


Q ss_pred             eeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEE
Q 026547          148 FDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       148 ~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ||+|++...     ......+++.+.+.|+|||++++
T Consensus       185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            999987542     23466789999999999998655

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.44  E-value=1.4e-12  Score=112.35  Aligned_cols=114  Identities=20%  Similarity=0.331  Sum_probs=96.5

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      +.....+++||++-|.||..+++.|.+   ++ +|++||+|...++.|++|++-+|++ .++.++++|+.+++.....+ 
T Consensus       212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~-  287 (393)
T COG1092         212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR-  287 (393)
T ss_pred             HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence            344556899999999999999999875   44 9999999999999999999999985 56899999999999988654 


Q ss_pred             CCCCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          143 ENEGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       143 ~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                        ..+||+|++|.+.            ..+...+..+.++|+|||++++.++..
T Consensus       288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence              4699999999642            235677788889999999999987764

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.44  E-value=1.3e-12  Score=111.06  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=83.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ...+++|||||||+|+.+..++...+  ..|+|+|+++.++..++...+..+...+++++.+++.+...        .++
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--------~~~  189 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--------LKA  189 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--------cCC
Confidence            34678999999999999999988643  36999999999887655443333334579999998866521        378


Q ss_pred             eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      ||+|++.+.   ..+...+++.+.+.|+|||.+++++....+
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~  231 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG  231 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence            999997643   244678999999999999999998765433

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.43  E-value=1.6e-12  Score=101.75  Aligned_cols=104  Identities=16%  Similarity=0.168  Sum_probs=81.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +...++.++||+|||.|..+++||+.   +-.|+++|.++..++.+++..++.+++  ++..+.|..+...        .
T Consensus        26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--------~   92 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--------P   92 (192)
T ss_dssp             CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---------T
T ss_pred             HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--------c
Confidence            45667889999999999999999984   779999999999999999988888874  8889998766521        3


Q ss_pred             CceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +.||+|+..     ......+..++.+...++|||+.++...
T Consensus        93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            789999764     2345567889999999999999888544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.43  E-value=4e-12  Score=104.43  Aligned_cols=116  Identities=23%  Similarity=0.411  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           56 PDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        56 ~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +....++..+...  .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|+.+
T Consensus        71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~  148 (251)
T TIGR03534        71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE  148 (251)
T ss_pred             CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence            3444454444433  2445999999999999999998876 679999999999999999999988875 69999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC-----------------------------cHHHHHHHHccCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN-----------------------------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++        .++||+|+++.+-..                             +..+++.+.+.|+|||.+++..
T Consensus       149 ~~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~  217 (251)
T TIGR03534       149 PLP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI  217 (251)
T ss_pred             cCc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            432        478999998632110                             2356788889999999999853

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14968 putative methyltransferase; Provisional

Probab=99.43  E-value=3.5e-12  Score=100.11  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=85.2

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-EEEEeccchHHHHHH
Q 026547           60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-INFIESEALSVLDQL  138 (237)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~  138 (237)
                      .++.......++++|||+|||+|..+..++..   +.+|+++|+++++++.+++++...+..++ +.++++|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            33444444467789999999999999999885   57999999999999999999988887544 8889998766432  


Q ss_pred             hhcCCCCCceeEEEEeCCCc------------------------CcHHHHHHHHccCCCCeEEEEe
Q 026547          139 LKDSENEGSFDYAFVDADKV------------------------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                            ..+||+|+.+....                        ....+++.+.+.|+|||.+++.
T Consensus        88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  34899998764311                        1345788999999999988764

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.43  E-value=1.8e-12  Score=106.73  Aligned_cols=111  Identities=13%  Similarity=0.188  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ...+..+.......++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++..      ...++++|+.+. 
T Consensus        28 ~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-   97 (251)
T PRK10258         28 RQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-   97 (251)
T ss_pred             HHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-
Confidence            344444444443445679999999999999888763   5799999999999999988642      246788888653 


Q ss_pred             HHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          136 DQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +      ...++||+|+....   ..+....+.++.+.|+|||.+++...
T Consensus        98 ~------~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258         98 P------LATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             c------CCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            1      12478999987643   34567889999999999999998754

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.42  E-value=2.1e-12  Score=105.09  Aligned_cols=109  Identities=17%  Similarity=0.279  Sum_probs=89.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..++++++.+|+.+...       ..+
T Consensus        48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~  120 (239)
T PRK00216         48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDN  120 (239)
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCC
Confidence            3445679999999999999999988765689999999999999999998876666679999999876421       147


Q ss_pred             ceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          147 SFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       147 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +||+|++..   .......+++.+.+.|++||.+++.+.
T Consensus       121 ~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        121 SFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             CccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            899998753   234567889999999999999987654

>PRK06922 hypothetical protein; Provisional

Probab=99.42  E-value=2.6e-12  Score=116.05  Aligned_cols=114  Identities=16%  Similarity=0.238  Sum_probs=88.6

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           63 AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ..+....++.+|||+|||+|..+..+++..+ +.+|+|+|+++.+++.|+++....+  .+++++++|+.+....+    
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f----  483 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF----  483 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----
Confidence            3445556788999999999999999998776 8899999999999999998876554  35888999987642112    


Q ss_pred             CCCCceeEEEEeCC----------------CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          143 ENEGSFDYAFVDAD----------------KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       143 ~~~~~~D~i~id~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                       ..++||+|++...                ......+++.+.+.|+|||.+++.+..+
T Consensus       484 -edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~  540 (677)
T PRK06922        484 -EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM  540 (677)
T ss_pred             -CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence             2478999986521                1234678899999999999999976543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.42  E-value=1.3e-11  Score=97.32  Aligned_cols=121  Identities=10%  Similarity=-0.018  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ...+.+...+....++.+|||++||+|..++.++.+..  .+|+++|.++..++.++++++..+..++++++++|+.+.+
T Consensus        35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l  112 (189)
T TIGR00095        35 VVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL  112 (189)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence            33444444444455788999999999999999987532  4899999999999999999999998778999999998877


Q ss_pred             HHHhhcCCCCCceeEEEEeCCC--cCcHHHHHHHH--ccCCCCeEEEEeC
Q 026547          136 DQLLKDSENEGSFDYAFVDADK--VNYWNYHERLM--KLLKVGGIAVYDN  181 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~~  181 (237)
                      ..+...   ...||+||+|.+-  ..+...++.+.  .+|+++|++++..
T Consensus       113 ~~~~~~---~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~  159 (189)
T TIGR00095       113 KFLAKK---PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE  159 (189)
T ss_pred             HHhhcc---CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence            654221   2358999998753  23455566554  4799999999864

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.42  E-value=3.4e-12  Score=114.68  Aligned_cols=101  Identities=19%  Similarity=0.333  Sum_probs=82.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.+|||+|||+|..++.++...+ +.+|+++|+|+.+++.|+++++..++.++++++++|..+.++        .++||+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl  209 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF  209 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence            46899999999999999998876 789999999999999999999998888889999999765432        368999


Q ss_pred             EEEeCCC-----------------------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVDADK-----------------------------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+++.+.                             ..+..+++.+.+.|+|||.+++.
T Consensus       210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            9985320                             01234556667899999999985

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.41  E-value=5.5e-12  Score=100.55  Aligned_cols=104  Identities=16%  Similarity=0.208  Sum_probs=78.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +....++.+|||+|||+|..+..++...+ +.+++|+|+++++++.|++++      ++++++++|+.+..        .
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~--------~  102 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPF--------K  102 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCC--------C
Confidence            34455777999999999999999988765 689999999999999998864      24678888876621        2


Q ss_pred             CCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          145 EGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       145 ~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      .++||+|++...-.     ....+++++.+.+  ++.+++.+....
T Consensus       103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~  146 (204)
T TIGR03587       103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP  146 (204)
T ss_pred             CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence            57999999765422     2356777777776  567777666543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.40  E-value=6.5e-13  Score=110.86  Aligned_cols=102  Identities=21%  Similarity=0.291  Sum_probs=80.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++++|||+|||+|..++..++. + ..+|+++|++|..++.|++|++.+++.+++.+.  ...+.         ...+|
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~~  226 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGKF  226 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-E
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------ccccC
Confidence            45689999999999999988775 2 458999999999999999999999998877653  21122         14899


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|+.+....-.......+.++|+|||.++++.++
T Consensus       227 dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl  261 (295)
T PF06325_consen  227 DLVVANILADVLLELAPDIASLLKPGGYLILSGIL  261 (295)
T ss_dssp             EEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence            99998876666667777788999999999999876

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.40  E-value=7.7e-12  Score=101.21  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=79.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++..+.  +++++.+|..+.++        .++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~  101 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRP  101 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCC
Confidence            345679999999999999998874 2 35999999999999999999988776  48888998866432        368


Q ss_pred             eeEEEEeCCCc------------------------CcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKV------------------------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|+++.+..                        .+..+++.+.+.|++||.+++-
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            99999874211                        0234677888999999999873

>TIGR00452 methyltransferase, putative

Probab=99.40  E-value=3.6e-12  Score=107.55  Aligned_cols=109  Identities=15%  Similarity=0.097  Sum_probs=81.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++++|||+|||+|+.+..++...+  ..|+|+|+++.++..++..-+..+...++++..+++.+...        ..+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--------~~~  188 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--------LYA  188 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--------CCC
Confidence            35578999999999999988887532  47999999999987654433333333568888888765421        368


Q ss_pred             eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      ||+||+.+.   ..+...+++++.+.|+|||.+++......|
T Consensus       189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            999997653   334568999999999999999998765444

Known examples to date are restricted to the proteobacteria.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.39  E-value=4.2e-12  Score=108.68  Aligned_cols=112  Identities=17%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      +.....++..+.. ....+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++..++.  .+++.+|....
T Consensus       182 D~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~  257 (342)
T PRK09489        182 DVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD  257 (342)
T ss_pred             CHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc
Confidence            3344444444432 3346899999999999999998876 679999999999999999999988864  46677776542


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEE
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .         .++||+|+++.+-.        ....+++.+.+.|+|||.+++
T Consensus       258 ~---------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        258 I---------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             c---------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            1         37899999875321        246788899999999998855

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.39  E-value=5.3e-12  Score=113.12  Aligned_cols=107  Identities=18%  Similarity=0.230  Sum_probs=85.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||||||+|..+..++...  +.+|+++|+++.+++.|+++..  +...+++++++|+.+..       ...+
T Consensus       263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-------~~~~  331 (475)
T PLN02336        263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-------YPDN  331 (475)
T ss_pred             CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC-------CCCC
Confidence            34567799999999999999998864  5699999999999999998765  44457999999986531       1246


Q ss_pred             ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +||+|++...   ..+...+++.+.+.|+|||.+++.+...
T Consensus       332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        332 SFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             CEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            8999997543   3346789999999999999999987653

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.38  E-value=1.4e-13  Score=97.08  Aligned_cols=96  Identities=23%  Similarity=0.306  Sum_probs=62.5

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547           75 IEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD  154 (237)
Q Consensus        75 LeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  154 (237)
                      ||+|||+|..+.+++...+ ..+++++|+|+.+++.+++++...+... ......+..+.....     ..++||+|+..
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence            7999999999999999886 8899999999999999999998877532 333443333332211     12599999876


Q ss_pred             CC---CcCcHHHHHHHHccCCCCeEE
Q 026547          155 AD---KVNYWNYHERLMKLLKVGGIA  177 (237)
Q Consensus       155 ~~---~~~~~~~~~~~~~~L~~gG~l  177 (237)
                      ..   ......+++.+.++|+|||+|
T Consensus        74 ~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            43   245678899999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.38  E-value=1.4e-11  Score=96.33  Aligned_cols=125  Identities=22%  Similarity=0.287  Sum_probs=96.2

Q ss_pred             ccccHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547           52 MSTAPDAGQLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE  130 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (237)
                      |..+...+.+...|... ..+.+|||+.||+|..++..+.+-  ..+|+.||.++..+...+++++..+..++++++.+|
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d  100 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD  100 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence            45566777777777776 789999999999999999766542  359999999999999999999999998889999999


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCCcC---cHHHHHHHH--ccCCCCeEEEEeC
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADKVN---YWNYHERLM--KLLKVGGIAVYDN  181 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~---~~~~~~~~~--~~L~~gG~lv~~~  181 (237)
                      +...+..+...   ..+||+||+|.+-..   +.+.++.+.  .+|+++|+|++..
T Consensus       101 ~~~~l~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  101 AFKFLLKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             HHHHHHHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             HHHHHHhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            99888776433   589999999976433   256777776  7999999999964

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.38  E-value=1.1e-11  Score=101.92  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=79.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.+|||+|||+|..++.++...+ +.+|+++|+++.+++.|+++++..+    ++++++|..+.++...     .++||+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~-----~~~fDl  156 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL-----RGRVDI  156 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc-----CCCEeE
Confidence            35899999999999999998776 6799999999999999999998765    4788999877554321     257999


Q ss_pred             EEEeCCCcC-----------------------------cHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVDADKVN-----------------------------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id~~~~~-----------------------------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |++|.+...                             +..+++.+.++|+|||.+++.
T Consensus       157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            998853210                             235666667999999999886

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK03612 spermidine synthase; Provisional

Probab=99.38  E-value=5e-12  Score=114.11  Aligned_cols=107  Identities=18%  Similarity=0.301  Sum_probs=86.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH--HHhcC---C-CCcEEEEeccchHHHHHHhhc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPV--IKKAG---V-DHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~~---~-~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ..++++||+||||+|..+.+++++ +...+|+++|+++++++.++++  +...+   . +++++++.+|+.+++...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            457889999999999999999875 4237999999999999999993  33321   2 368999999999887654   


Q ss_pred             CCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         .++||+|++|.....        ..++++.+.+.|+|||+++++.
T Consensus       371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence               479999999964322        2468999999999999999864

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.38  E-value=5.7e-12  Score=107.75  Aligned_cols=117  Identities=18%  Similarity=0.201  Sum_probs=94.3

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      ++.+..+..+..++...++..|||+|||+|..++.++..   +.+++|+|+++.+++.++.+++.+|+.+ ++++++|+.
T Consensus       165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~  240 (329)
T TIGR01177       165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT  240 (329)
T ss_pred             CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence            345667777777777778889999999999998876653   5799999999999999999999999876 889999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +...       ..++||+|++|.+-            ..+..+++.+.+.|+|||.+++-
T Consensus       241 ~l~~-------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       241 KLPL-------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             cCCc-------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            6421       13789999998431            11467888889999999988874

This family is found exclusively in the Archaea.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.37  E-value=5.3e-11  Score=105.47  Aligned_cols=123  Identities=18%  Similarity=0.217  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      ......+...++  ...++.+|||+++|.|.-|.++|..+...+.|+++|+++..++..++++++.|+. ++.+...|+.
T Consensus        96 Qd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~  174 (470)
T PRK11933         96 QEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGR  174 (470)
T ss_pred             ECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchh
Confidence            334444444444  5567889999999999999999999876789999999999999999999999985 4888888987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .....+      ...||.|++|++.+..                         .++++.++++|+|||.||.+.+.+
T Consensus       175 ~~~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        175 VFGAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             hhhhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            654333      3679999999765421                         456777789999999999999875

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.37  E-value=9.2e-12  Score=101.24  Aligned_cols=102  Identities=19%  Similarity=0.282  Sum_probs=82.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++.+.     +++.++.+|+.+..       ...++|
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~-------~~~~~f   99 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP-------LEDSSF   99 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC-------CCCCce
Confidence            3457999999999999999999876 6789999999999998888653     36889999886642       124789


Q ss_pred             eEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++...   ..+...+++.+.++|+|||.+++....
T Consensus       100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072       100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99998753   235678899999999999999987543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=1.1e-11  Score=103.25  Aligned_cols=115  Identities=23%  Similarity=0.389  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHH---hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           56 PDAGQLMAMLL---KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        56 ~~~~~~l~~l~---~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      +.+..++..+.   ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++ .+...+++++.+|..
T Consensus        91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~  168 (275)
T PRK09328         91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF  168 (275)
T ss_pred             CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence            34444444443   234667999999999999999999886 7899999999999999999987 333457999999885


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCC-----------------------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADK-----------------------------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +..+        .++||+|+++.+.                             ..+..+++.+.++|+|||.+++.
T Consensus       169 ~~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        169 EPLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             CcCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            4321        3689999985321                             01245667777999999999984

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.36  E-value=1.3e-11  Score=102.56  Aligned_cols=111  Identities=24%  Similarity=0.378  Sum_probs=85.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ....++++||++-|.+|..+++.+..-  ..+|++||.|..+++.++++++-+|++ .+++++++|+.+++..+..    
T Consensus       119 ~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----  192 (286)
T PF10672_consen  119 RKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----  192 (286)
T ss_dssp             HHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----
T ss_pred             HHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----
Confidence            344678999999999999999877642  348999999999999999999999986 6899999999998887643    


Q ss_pred             CCceeEEEEeCCC---------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADK---------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~---------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .++||+|++|.+.         ..+...+..+.++|+|||.|++..+
T Consensus       193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            3799999999652         2356778888899999999887654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.36  E-value=4.6e-11  Score=99.16  Aligned_cols=106  Identities=22%  Similarity=0.300  Sum_probs=91.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C-CCcEEEEeccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V-DHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      .++++||-||-|.|..+.+++++.+ -.+++.||+++..++.+++++....  . ++|++++.+|+.+++...      .
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------~  147 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------E  147 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------C
Confidence            3458999999999999999999876 6799999999999999999997653  2 489999999999999865      3


Q ss_pred             CceeEEEEeCCCc-C------cHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKV-N------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~-~------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+||+|++|.... .      ..+|++.|.+.|+++|+++..+
T Consensus       148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            5899999996432 1      4789999999999999999973

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.35  E-value=1.4e-12  Score=104.72  Aligned_cols=100  Identities=18%  Similarity=0.194  Sum_probs=79.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-----cEEEEeccchHHHHHHhhcCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-----KINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +++|||+|||.|..+..||+.   ++.|+|||+++++++.|++.....+..+     ++++.+.++.+.          .
T Consensus        90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~  156 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------T  156 (282)
T ss_pred             CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------c
Confidence            367999999999999999985   6799999999999999999944333322     355666665444          3


Q ss_pred             CceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ++||.|++...   ..+..++++.+.++|+|||.+++.++.
T Consensus       157 ~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  157 GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence            67999998643   334678999999999999999998875

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.35  E-value=4.3e-11  Score=97.36  Aligned_cols=116  Identities=18%  Similarity=0.218  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      +...+++.......++.+|||||||+|..+..+++.   ..+++++|+++.+++.+++++...+.  .++++.++..+..
T Consensus        34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~  108 (233)
T PRK05134         34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA  108 (233)
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence            334445555555557789999999999999988874   46899999999999999998877665  4788888876654


Q ss_pred             HHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          136 DQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...      .++||+|++...   ..+...+++.+.+.|+|||.+++...
T Consensus       109 ~~~------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        109 AEH------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hhc------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            321      478999987532   33456788999999999999998753

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.35  E-value=1.2e-11  Score=107.48  Aligned_cols=101  Identities=17%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||||||+|..+.++++..  +.+|+++|+++++++.|+++.+  +.  .+++..+|..+.          .+
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~  227 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG  227 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC
Confidence            34567899999999999999999864  4699999999999999999874  32  378888886543          37


Q ss_pred             ceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +||.|+....     ..++..+++.+.++|+|||.+++..+.
T Consensus       228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            8999975432     234578999999999999999998654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.34  E-value=2.2e-11  Score=105.53  Aligned_cols=118  Identities=18%  Similarity=0.289  Sum_probs=88.2

Q ss_pred             ccHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           54 TAPDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        54 ~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      ..+.+..++..+.. ..++.+|||+|||+|..++.++...+ +.+|+++|+|+.+++.|+++++..+.  +++++++|..
T Consensus       234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~  310 (423)
T PRK14966        234 PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWF  310 (423)
T ss_pred             CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchh
Confidence            34566666666554 34557999999999999999988766 78999999999999999999988774  6999999986


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCc------------------------C----cHHHHHHHHccCCCCeEEEEe
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKV------------------------N----YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~------------------------~----~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +....      ..++||+|+++.+.-                        +    +..+++.+.+.|+|||.+++.
T Consensus       311 e~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        311 DTDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             ccccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            53210      135799999874310                        0    224455555799999998874

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.34  E-value=2.9e-11  Score=102.78  Aligned_cols=102  Identities=11%  Similarity=0.041  Sum_probs=80.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..++.++..   +.+|+++|+++.+++.|+++++..++ ++++++++|+.++....      .++|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~  241 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP  241 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence            35789999999999999999983   56999999999999999999999998 56999999998875432      3579


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|++|.+.......+......++|++++.++
T Consensus       242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             eEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence            99999977655433333333456787777764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.34  E-value=2.1e-11  Score=98.12  Aligned_cols=107  Identities=20%  Similarity=0.293  Sum_probs=85.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++.   ...+++++.+|+.+...       ..+
T Consensus        36 ~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-------~~~  105 (223)
T TIGR01934        36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-------EDN  105 (223)
T ss_pred             ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-------CCC
Confidence            34467899999999999999999988744799999999999999998875   33568999999876421       146


Q ss_pred             ceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +||+|++..   .......+++.+.+.|+|||.+++.+..
T Consensus       106 ~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       106 SFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             cEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            899998753   3345678899999999999999886543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.34  E-value=9e-12  Score=99.89  Aligned_cols=102  Identities=13%  Similarity=0.116  Sum_probs=75.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--------------CCcEEEEeccchHHH
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--------------DHKINFIESEALSVL  135 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~  135 (237)
                      ++.+||++|||.|..+++||..   +-.|++||+++.+++.+.+   +.++              ..+|+++++|..+..
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~  107 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT  107 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCC
Confidence            5579999999999999999973   6799999999999997533   2222              236899999997763


Q ss_pred             HHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          136 DQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ...      .++||.|+-..     .......+++.+.++|+|||++++....
T Consensus       108 ~~~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       108 AAD------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             ccc------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            321      25788886432     2233456899999999999986665443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.4e-11  Score=101.75  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=89.6

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ++....-++..+.....+ +|||+|||.|+.++.+++..| ..+++.+|.+...++.+|++++.++..+. .++..|..+
T Consensus       143 lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~  219 (300)
T COG2813         143 LDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYE  219 (300)
T ss_pred             cChHHHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccc
Confidence            445555555555544444 999999999999999999988 89999999999999999999999887653 677777655


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEE
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~  179 (237)
                      -.         .++||+|+++.+-+.        ..++++...+.|++||-|-+
T Consensus       220 ~v---------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         220 PV---------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             cc---------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            43         369999998754222        24788888899999997643

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.33  E-value=8.1e-12  Score=96.90  Aligned_cols=115  Identities=17%  Similarity=0.242  Sum_probs=86.8

Q ss_pred             HHHHHHH---HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE-EEeccchH
Q 026547           58 AGQLMAM---LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN-FIESEALS  133 (237)
Q Consensus        58 ~~~~l~~---l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~  133 (237)
                      ..++...   ++.......|||+|||+|.+-.++-. . +..+|+++|+++.|-+.+.+.+++... .++. |++++.++
T Consensus        61 krelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~-~-p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~  137 (252)
T KOG4300|consen   61 KRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPW-K-PINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGEN  137 (252)
T ss_pred             HHHHHhhhHHHhcccCccceEEecccCCCCcccccC-C-CCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhc
Confidence            4444444   33334445789999999998665432 1 478999999999999999999988754 3465 88888866


Q ss_pred             HHHHHhhcCCCCCceeEEEE---eCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFV---DADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~i---d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      . ++++     +++||.|+.   -+...+..+.+.++.++|+|||.+++=.
T Consensus       138 l-~~l~-----d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  138 L-PQLA-----DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             C-cccc-----cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            5 3332     589999964   4677888899999999999999998743

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.32  E-value=2.3e-11  Score=97.31  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=88.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchHHHHHHHHHHhcCCCCc--EEEEeccchHHHHHHh
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQIMAIDVNRETYEIGLPVIKKAGVDHK--INFIESEALSVLDQLL  139 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~  139 (237)
                      ...+..++||++||+|..+..+.++...     +.+|+.+|++|+++..++++..+.++.+.  +.++.+|+.+.     
T Consensus        97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-----  171 (296)
T KOG1540|consen   97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-----  171 (296)
T ss_pred             CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-----
Confidence            3445679999999999999999998863     28999999999999999999888777644  89999999776     


Q ss_pred             hcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          140 KDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                        ++++.+||...+...   ..+....++++.|.|||||.+.+-
T Consensus       172 --pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  172 --PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             --CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence              245689999877654   445678899999999999988763

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.32  E-value=3.3e-11  Score=95.31  Aligned_cols=102  Identities=25%  Similarity=0.384  Sum_probs=85.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      .+||||||.|...+.+|...| +..++|+|+....+..+.+.+...++. ++.++++|+...+..+.+    ++++|.|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheEE
Confidence            899999999999999999988 899999999999999999999999885 599999999998888743    48999999


Q ss_pred             EeCCCc-----------CcHHHHHHHHccCCCCeEEEEe
Q 026547          153 VDADKV-----------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       153 id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +.-+-+           -.+++++.+.+.|+|||.|.+.
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~  132 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA  132 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence            874321           1478999999999999998763

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.32  E-value=5.1e-11  Score=95.92  Aligned_cols=104  Identities=24%  Similarity=0.385  Sum_probs=90.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      ...+||||||.|.....+|...| +..++|||+....+..+.+.+.+.++. ++.++++|+.+.+..+.+    .++.|-
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~----~~sl~~  122 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP----DGSLDK  122 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC----CCCeeE
Confidence            45899999999999999999988 789999999999999999999999986 699999999999988743    369999


Q ss_pred             EEEeCCC-----cC------cHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVDADK-----VN------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id~~~-----~~------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |++.-+-     .+      .+.+++.+.+.|++||+|.+.
T Consensus       123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            9886321     11      468999999999999999874

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.32  E-value=2.7e-11  Score=103.16  Aligned_cols=100  Identities=15%  Similarity=0.111  Sum_probs=79.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.++++...    .+++++.+|+.+.-       ...++||
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp-------~~~~sFD  180 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP-------FPTDYAD  180 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC-------CCCCcee
Confidence            467999999999999999988775 57999999999999999987542    35788999986641       1247899


Q ss_pred             EEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          150 YAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       150 ~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|++...   ..+....++++.+.|+|||.+++..
T Consensus       181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            9987643   2345678999999999999987743

>PTZ00146 fibrillarin; Provisional

Probab=99.32  E-value=2.6e-11  Score=100.50  Aligned_cols=106  Identities=16%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+|||+|||+|+.+.+++..+.+.++|+++|+++.+.+...+..+..   ++|.++.+|+..... +.   ...++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~-y~---~~~~~  202 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK-YR---MLVPM  202 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh-hh---cccCC
Confidence            456779999999999999999999876789999999987665444443321   458899999864211 10   01368


Q ss_pred             eeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYW-NYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|+||+|....+.. .++.++.+.|+|||.+++.
T Consensus       203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            99999998644433 4456788899999999983

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.31  E-value=2.2e-11  Score=99.77  Aligned_cols=107  Identities=18%  Similarity=0.208  Sum_probs=87.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC---CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV---DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++||-||-|.|..+..++++-+ ..+|+.||+++..++.+++++.....   ++|++++.+|+..++...      
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------  146 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------  146 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence            44789999999999999999987643 57999999999999999999876432   478999999999998865      


Q ss_pred             CC-ceeEEEEeCCCc-------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EG-SFDYAFVDADKV-------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~-~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+ +||+|++|...+       -..++++.+.+.|+|||++++..
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            35 899999996532       14689999999999999999865

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.31  E-value=4.1e-11  Score=96.63  Aligned_cols=101  Identities=18%  Similarity=0.202  Sum_probs=79.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+.+++..   +.+|+|+|+++++++.|++++...+..+++++.++|+.+.          .++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~  119 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE  119 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence            446789999999999999999874   5699999999999999999998777666799999998664          268


Q ss_pred             eeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ||+|+....     .......++.+.+.+++++++.+.+
T Consensus       120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~  158 (219)
T TIGR02021       120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP  158 (219)
T ss_pred             cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            999976422     1224466788888888877777643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR03438 probable methyltransferase

Probab=99.31  E-value=4.9e-11  Score=100.71  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=79.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+++++++..+++++|+|+++++.+++++......-++.++++|..+.++.....  ......
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence            557999999999999999999876457999999999999999998876432235778899987654322100  001233


Q ss_pred             EEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          150 YAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       150 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +++++..     ......+++.+.+.|+|||.+++.-
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            4444332     2224568999999999999998743

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.5e-11  Score=101.23  Aligned_cols=117  Identities=20%  Similarity=0.378  Sum_probs=87.9

Q ss_pred             cHHHHHHHHHHH-hhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLL-KLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~-~~~~~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+.+..++..+. ...... +|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|.+.+|+ .++.++.+|..
T Consensus        93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf  170 (280)
T COG2890          93 RPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLF  170 (280)
T ss_pred             CCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecc
Confidence            456666666533 222222 799999999999999999887 78999999999999999999999998 56677777655


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC---Cc-------------------------CcHHHHHHHHccCCCCeEEEEeCc
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDAD---KV-------------------------NYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +.+         .++||+|+.+.+   ..                         -+..++..+...|++||++++.--
T Consensus       171 ~~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         171 EPL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             ccc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence            443         369999987632   11                         124566667789999999998643

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.29  E-value=8.6e-11  Score=104.07  Aligned_cols=105  Identities=16%  Similarity=0.120  Sum_probs=84.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..++.+++..   .+|+++|+++.+++.|+++++..++. +++++.+|+.+.++.+...   ..+
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~---~~~  362 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWA---GQI  362 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhc---CCC
Confidence            3456799999999999999999853   48999999999999999999988874 6999999998876654211   357


Q ss_pred             eeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|++|.+... ...+++.+. .+++++++.++
T Consensus       363 ~D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       363 PDVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             CCEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            999999987655 567777765 48898887764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.29  E-value=4.2e-11  Score=107.37  Aligned_cols=110  Identities=25%  Similarity=0.290  Sum_probs=82.1

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .++...++++|||||||+|..+..+++.   ..+|+++|+++.+++.+++..   +..++++++++|+.+....     .
T Consensus        31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~-----~   99 (475)
T PLN02336         31 SLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLN-----I   99 (475)
T ss_pred             hhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccC-----C
Confidence            3334445679999999999999999986   358999999999998776532   3335689999998542111     1


Q ss_pred             CCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          144 NEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ..++||+|++......     ...+++.+.+.|+|||.+++.+..+
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            2478999998653222     4578899999999999999977654

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.29  E-value=8.1e-11  Score=104.53  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=84.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..++.+++..   .+|+++|+++++++.|+++++..++. +++++++|+.+.+....   ....+
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~---~~~~~  367 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQP---WALGG  367 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhh---hhcCC
Confidence            3456799999999999999999863   59999999999999999999988875 59999999987654321   01357


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|++|.+.....+.++.+.+ +++++++.++
T Consensus       368 fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        368 FDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             CCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            9999999877666777776655 6888887775

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.29  E-value=4.1e-11  Score=91.43  Aligned_cols=107  Identities=24%  Similarity=0.285  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           56 PDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        56 ~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ....+++..+.. ..++.+|||+|||.|..+..++..   +.+++++|+++.+++.           .++.....+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~   72 (161)
T PF13489_consen    7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP   72 (161)
T ss_dssp             HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred             HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence            445566666665 567889999999999999999764   4599999999999877           1123333222222


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..       ..++||+|++...-   .+...+++.+.++|+|||.+++....
T Consensus        73 ~~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   73 PF-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             HC-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hc-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            11       15899999987643   34678999999999999999998775

...

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.28  E-value=5.7e-11  Score=95.13  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=73.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~  145 (237)
                      ..++.+|||+|||+|.++..+++..+..++|++||+++ +          .+. +.++++++|+.+.  ++.+... ...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~  115 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLER-VGD  115 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence            45677999999999999999999876568999999988 1          122 3489999998763  2222111 124


Q ss_pred             CceeEEEEeCCCcC--------------cHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVN--------------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++||+|+.+.....              ....++.+.++|+|||.+++..
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            78999998752211              1346788889999999999963

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.28  E-value=4.2e-11  Score=96.39  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=80.1

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC-------------
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV-------------  120 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------  120 (237)
                      ..+...+.+..+ ...++.+||++|||.|..+++||..   +.+|++||+++.+++.+.+   +.++             
T Consensus        22 p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~   94 (218)
T PRK13255         22 VNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHY   94 (218)
T ss_pred             CCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCcccccccccccc
Confidence            344444443322 2234579999999999999999973   7799999999999987642   2222             


Q ss_pred             -CCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          121 -DHKINFIESEALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       121 -~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                       ..+|+++++|+.+..+..      .+.||+|+-.     ........+++.+.++|+|||++++
T Consensus        95 ~~~~v~~~~~D~~~l~~~~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255         95 QAGEITIYCGDFFALTAAD------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ccCceEEEECcccCCCccc------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence             246899999998764321      3689999732     2333456889999999999986444

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.26  E-value=1.1e-10  Score=96.72  Aligned_cols=106  Identities=23%  Similarity=0.307  Sum_probs=76.2

Q ss_pred             CCCEEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCchHHHHHHHHHH------hc-----------------
Q 026547           70 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQIMAIDVNRETYEIGLPVIK------KA-----------------  118 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~----~~~la~~~~~----~~~v~~vD~~~~~~~~a~~~~~------~~-----------------  118 (237)
                      ++.+|+++|||+|..    ++.+++..+.    +.+|+|+|+|+.+++.|++..-      ..                 
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            456999999999973    4455555442    4689999999999999987531      00                 


Q ss_pred             ---CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          119 ---GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       119 ---~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                         .+..+|+|.++|..+...       ..++||+|++...-     ......++.+.+.|+|||.+++...
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence               012468899999876422       14789999985321     2334689999999999999998543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.25  E-value=1.5e-10  Score=93.86  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=74.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++.+++.|++++...+..+++++..+|...    .      .++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~------~~~f  128 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----L------LGRF  128 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----c------cCCc
Confidence            45679999999999999999875   457999999999999999999888876789999998321    1      3789


Q ss_pred             eEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADK-----VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |+|++....     ......++.+.+.++.++++.+
T Consensus       129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            999875432     2234566666666655554443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.25  E-value=1.8e-10  Score=93.11  Aligned_cols=103  Identities=19%  Similarity=0.203  Sum_probs=82.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...+.. ++++..+|+.+.....      .++||
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~------~~~~D  114 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG------AKSFD  114 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC------CCCcc
Confidence            4779999999999999988874   357999999999999999998876653 5888888887654321      37899


Q ss_pred             EEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          150 YAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       150 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|++..   ...+...+++.+.+.|++||.+++...
T Consensus       115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            998763   234567889999999999999988654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.24  E-value=2.8e-10  Score=98.90  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=90.6

Q ss_pred             CccccHHHHHHHHHH-Hh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547           51 MMSTAPDAGQLMAML-LK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        51 ~~~~~~~~~~~l~~l-~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      |..+.....+.+... ..   ..++.+|||+|||+|..++.++..   ..+|+++|+++.+++.|+++++..++. ++++
T Consensus       210 F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~  285 (374)
T TIGR02085       210 FFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSF  285 (374)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence            345555555555433 22   235679999999999999999863   568999999999999999999999885 6999


Q ss_pred             EeccchHHHHHHhhcCCCCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547          127 IESEALSVLDQLLKDSENEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +.+|+.+++...      ..+||+|++|.+... ....++.+. .++|++++.++
T Consensus       286 ~~~d~~~~~~~~------~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       286 AALDSAKFATAQ------MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             EECCHHHHHHhc------CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            999998876532      256999999987554 345566664 57898888775

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=4.1e-10  Score=96.99  Aligned_cols=130  Identities=21%  Similarity=0.279  Sum_probs=102.3

Q ss_pred             CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547           50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      +...++.....+...+....++.+|||+.++.|.=|.+++..+.. +..|+++|.++..+...++++++.|..+ +.+.+
T Consensus       136 G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~  214 (355)
T COG0144         136 GLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVN  214 (355)
T ss_pred             eEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEe
Confidence            334455666667777778888899999999999999999999874 3456999999999999999999999976 77888


Q ss_pred             ccchHHHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          129 SEALSVLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .|+........    ..++||.|++|++.+.                         -.++++..+++|+|||.|+.+.+.
T Consensus       215 ~d~~~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS  290 (355)
T COG0144         215 KDARRLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS  290 (355)
T ss_pred             ccccccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence            87755433321    1236999999965422                         135777888999999999999987


Q ss_pred             C
Q 026547          184 W  184 (237)
Q Consensus       184 ~  184 (237)
                      .
T Consensus       291 ~  291 (355)
T COG0144         291 L  291 (355)
T ss_pred             C
Confidence            5

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.24  E-value=3.2e-11  Score=93.46  Aligned_cols=114  Identities=11%  Similarity=-0.048  Sum_probs=85.7

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++..   .++++++++|+.+....       .
T Consensus         9 ~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~   75 (169)
T smart00650        9 ANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------K   75 (169)
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------c
Confidence            34456679999999999999999985   46999999999999999998854   24799999999876321       2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHc--cCCCCeEEEEeCcCCCCcccCCC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGTVAMSE  192 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~g~~~~~~  192 (237)
                      .+||.|+.+..-....+.+..+.+  .+.++|++++..-........|.
T Consensus        76 ~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~  124 (169)
T smart00650       76 LQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG  124 (169)
T ss_pred             cCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence            469999988765555566666664  34588999997765544444443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.23  E-value=1.1e-10  Score=96.33  Aligned_cols=110  Identities=19%  Similarity=0.203  Sum_probs=79.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      .-..+++|||||||.||.+..|+..-+  ..|+|+|.++...-+.+..-+-.|....+.++.. ..+.++.       .+
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl-gvE~Lp~-------~~  181 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL-GVEDLPN-------LG  181 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc-chhhccc-------cC
Confidence            345789999999999999999987633  4799999999877654443333454433444432 2333332       37


Q ss_pred             ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      .||.||+-+.   ..+....+..+...|++||.+|++.....|
T Consensus       182 ~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g  224 (315)
T PF08003_consen  182 AFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDG  224 (315)
T ss_pred             CcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecC
Confidence            8999998764   455678899999999999999999887655

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.23  E-value=4.1e-10  Score=87.24  Aligned_cols=125  Identities=18%  Similarity=0.231  Sum_probs=97.8

Q ss_pred             ccccHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547           52 MSTAPDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE  130 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (237)
                      |..++..+.+...+.. ...+.++||+-+|+|..++..+.+.  ..+++.||.+.......++|++..+...+++++..|
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d  101 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRND  101 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence            5566677777777777 4888999999999999999876642  358999999999999999999999988889999999


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHH----ccCCCCeEEEEeCc
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLM----KLLKVGGIAVYDNT  182 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~----~~L~~gG~lv~~~~  182 (237)
                      +...++.+..    ..+||+||+|.+-..  .........    .+|+|+|++++..-
T Consensus       102 a~~~L~~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742         102 ALRALKQLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             HHHHHHhcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            9987776632    246999999976442  211222222    67999999999643

>PRK06202 hypothetical protein; Provisional

Probab=99.22  E-value=6.4e-11  Score=96.37  Aligned_cols=114  Identities=12%  Similarity=0.071  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ..+.+.......++.+|||+|||+|..+..+++..+   .+.+|+++|+++++++.|++.....+    +++...++.+.
T Consensus        48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l  123 (232)
T PRK06202         48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDEL  123 (232)
T ss_pred             HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccc
Confidence            334444444445678999999999999988876532   24599999999999999988764333    45555544332


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                       +.      ..++||+|++...-.+     ...+++++.++++  |.+++.+...
T Consensus       124 -~~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        124 -VA------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             -cc------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence             11      1479999998653222     2458888888887  5666666543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.22  E-value=4e-11  Score=91.32  Aligned_cols=107  Identities=21%  Similarity=0.317  Sum_probs=84.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||.|.....|++.-- .++++|+|.++.+++.|+...++.+.++.|+|.+.|+.+.  .     +-.++||
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~-----~~~~qfd  138 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--D-----FLSGQFD  138 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--c-----cccccee
Confidence            345999999999999888886432 3569999999999999999999999998899999998764  1     1247888


Q ss_pred             EEEE----eC-------CCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          150 YAFV----DA-------DKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       150 ~i~i----d~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +|.-    |+       ......-|+..+.++|+|||++++..+.|
T Consensus       139 lvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  139 LVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             EEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            8851    21       12223567888999999999999988887

>PHA03411 putative methyltransferase; Provisional

Probab=99.21  E-value=1.2e-10  Score=95.56  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=74.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .....+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++      ++++++++|+.+...        ..+
T Consensus        62 ~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~k  126 (279)
T PHA03411         62 AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEK  126 (279)
T ss_pred             cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCC
Confidence            33457999999999999998887654 579999999999999998864      358899999987632        368


Q ss_pred             eeEEEEeCCCcC-----------------------cHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVN-----------------------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~-----------------------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|+.+.+-..                       ..+++.....+|+|+|.+.+.
T Consensus       127 FDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        127 FDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             CcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            999998643110                       134556666889999976654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.21  E-value=1.9e-10  Score=90.56  Aligned_cols=107  Identities=15%  Similarity=0.213  Sum_probs=75.4

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHH
Q 026547           61 LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQL  138 (237)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~  138 (237)
                      +...+....++.+|||+|||+|..+..+++.....++|+++|+++.+           +. ++++++++|+.+.  ++.+
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l   90 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI   90 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence            33444455678899999999999999998877546799999999864           11 3478888887542  1111


Q ss_pred             hhcCCCCCceeEEEEeCCCc-------C-------cHHHHHHHHccCCCCeEEEEe
Q 026547          139 LKDSENEGSFDYAFVDADKV-------N-------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ... ...++||+|+++....       +       ....++.+.+.|+|||.+++.
T Consensus        91 ~~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        91 RER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HHH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            110 1236899999875311       1       146788889999999999985

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.21  E-value=1.5e-10  Score=93.46  Aligned_cols=123  Identities=17%  Similarity=0.280  Sum_probs=93.7

Q ss_pred             cccHHHHHHHHHHHhh------cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547           53 STAPDAGQLMAMLLKL------VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~------~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      ...+++++++......      .++..+||+|||+|..++.++..++ .++|++||.++.++..|.+|..++++.+++.+
T Consensus       125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v  203 (328)
T KOG2904|consen  125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV  203 (328)
T ss_pred             ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence            3456777777765542      3456899999999999999999999 89999999999999999999999999999998


Q ss_pred             Eec----cchHHHHHHhhcCCCCCceeEEEEeCC--------------------------Cc---CcHHHHHHHHccCCC
Q 026547          127 IES----EALSVLDQLLKDSENEGSFDYAFVDAD--------------------------KV---NYWNYHERLMKLLKV  173 (237)
Q Consensus       127 ~~~----d~~~~~~~~~~~~~~~~~~D~i~id~~--------------------------~~---~~~~~~~~~~~~L~~  173 (237)
                      ++-    |..+..+.+      .+++|+++.+.+                          ..   .+..++.-..+.|+|
T Consensus       204 ~~~~me~d~~~~~~l~------~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~  277 (328)
T KOG2904|consen  204 IHNIMESDASDEHPLL------EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP  277 (328)
T ss_pred             Eecccccccccccccc------cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence            854    443333222      589999986421                          11   123455566699999


Q ss_pred             CeEEEEeCc
Q 026547          174 GGIAVYDNT  182 (237)
Q Consensus       174 gG~lv~~~~  182 (237)
                      ||.+.+.-.
T Consensus       278 gg~~~le~~  286 (328)
T KOG2904|consen  278 GGFEQLELV  286 (328)
T ss_pred             CCeEEEEec
Confidence            999998754

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.21  E-value=1.5e-10  Score=91.47  Aligned_cols=114  Identities=21%  Similarity=0.254  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ....+..+......++..|+|+.||.|..++.+|+..+ ..+|+++|++|..++..+++++.+++.+++.++++|+.+++
T Consensus        87 rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~  165 (200)
T PF02475_consen   87 RLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL  165 (200)
T ss_dssp             GGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred             ccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence            33334333333356788999999999999999998644 67999999999999999999999999999999999999987


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +        ...+|-|+++.+... .+|++.+.+++++||++.+
T Consensus       166 ~--------~~~~drvim~lp~~~-~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  166 P--------EGKFDRVIMNLPESS-LEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             ---------TT-EEEEEE--TSSG-GGGHHHHHHHEEEEEEEEE
T ss_pred             C--------ccccCEEEECChHHH-HHHHHHHHHHhcCCcEEEC
Confidence            6        389999999876544 4788999999999998853

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.20  E-value=3e-10  Score=85.42  Aligned_cols=120  Identities=17%  Similarity=0.115  Sum_probs=98.5

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .++++..++.|...+...++..|||+|.|+|..|..++++.-+...++++|.++++....++.+      +.++++.||+
T Consensus        30 ~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda  103 (194)
T COG3963          30 LPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDA  103 (194)
T ss_pred             cCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccch
Confidence            5678889999999888999999999999999999998887766889999999999998888765      3477999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEE
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+.-..+.+.  ....||.|+......     ...++++.+...|+.||.++-
T Consensus       104 ~~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         104 FDLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             hhHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            8876555443  346799998765433     345789999999999998875

>PRK05785 hypothetical protein; Provisional

Probab=99.19  E-value=2.8e-10  Score=92.22  Aligned_cols=97  Identities=13%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             HHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           61 LMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        61 ~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      ++..+... .++.+|||+|||+|..+..+++..  +.+|+|+|++++|++.|++.         ..++++|+.+. +   
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p---  105 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-P---  105 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-C---
Confidence            34444332 347799999999999999998764  46999999999999998863         13467777653 1   


Q ss_pred             hcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCe
Q 026547          140 KDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGG  175 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG  175 (237)
                         +.+++||+|++...   ..+....++++.+.|+|..
T Consensus       106 ---~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        106 ---FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ---CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence               23689999987643   3456788999999999953

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.19  E-value=3.2e-10  Score=79.04  Aligned_cols=99  Identities=19%  Similarity=0.286  Sum_probs=77.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      +++|+|||.|..+..++. . ...+++++|+++...+.+++.....+ ..++.++.+|..+....      ...+||+|+
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEE
Confidence            489999999999998887 2 36799999999999998886443333 35689999998876541      147899999


Q ss_pred             EeCCCc----CcHHHHHHHHccCCCCeEEEEe
Q 026547          153 VDADKV----NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       153 id~~~~----~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++....    ....+++.+.+.+++||.+++.
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            876533    3567888888999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.12  E-value=2.4e-09  Score=92.64  Aligned_cols=122  Identities=15%  Similarity=0.135  Sum_probs=87.9

Q ss_pred             ccccHHHHHHHHH-HHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547           52 MSTAPDAGQLMAM-LLKLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        52 ~~~~~~~~~~l~~-l~~~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ..+.+...+.|.. +.....  +.+|||++||+|..++.+++..   .+|+++|.++.+++.++++++..++. +++++.
T Consensus       185 ~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~  260 (362)
T PRK05031        185 TQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIR  260 (362)
T ss_pred             eccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEE
Confidence            3445554444443 333322  3579999999999999999864   48999999999999999999998875 699999


Q ss_pred             ccchHHHHHHhhcCC---------CCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547          129 SEALSVLDQLLKDSE---------NEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       129 ~d~~~~~~~~~~~~~---------~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|+.++++.+.....         ...+||+||+|.+... ....++.+.+   +++++.++
T Consensus       261 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        261 MSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             CCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence            999998876532100         0125899999987544 3555566654   67777764

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.12  E-value=1.7e-09  Score=93.96  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=84.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      ..+|||++||+|..++.++...+ ..+|+++|+++.+++.++++++.+++. .++++++|+.+.+..       .++||+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~  128 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV  128 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence            35899999999999999988654 458999999999999999999998875 477999999877643       257999


Q ss_pred             EEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |++|.. .....+++...+.+++||++.+.
T Consensus       129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            999975 34467888877889999999996

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.12  E-value=3.3e-10  Score=89.49  Aligned_cols=137  Identities=13%  Similarity=0.138  Sum_probs=87.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +..++||+|+|.|..|..++..+  -.+|..||+.+.+++.|++++...+ ....++++...+++.|.       ..+||
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-------~~~YD  124 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-------EGKYD  124 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----------TT-EE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-------CCcEe
Confidence            35699999999999999876543  4599999999999999998775421 22356777777777653       37999


Q ss_pred             EEEEeCCC-----cCcHHHHHHHHccCCCCeEEEE-eCcCCCCc-ccCCCCCCCccccchHHHHHHHHHHhhcCCCceEE
Q 026547          150 YAFVDADK-----VNYWNYHERLMKLLKVGGIAVY-DNTLWGGT-VAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLS  222 (237)
Q Consensus       150 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~-~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  222 (237)
                      +||+-...     .+..+||++|...|+|+|+||+ +|+...|. +.++.+.      ..++....|.+.+ ...++..+
T Consensus       125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds------SvTRs~~~~~~lF-~~AGl~~v  197 (218)
T PF05891_consen  125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS------SVTRSDEHFRELF-KQAGLRLV  197 (218)
T ss_dssp             EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT------EEEEEHHHHHHHH-HHCT-EEE
T ss_pred             EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC------eeecCHHHHHHHH-HHcCCEEE
Confidence            99987543     3357899999999999999999 66665554 4444332      3344444444433 33455544


Q ss_pred             e
Q 026547          223 H  223 (237)
Q Consensus       223 ~  223 (237)
                      -
T Consensus       198 ~  198 (218)
T PF05891_consen  198 K  198 (218)
T ss_dssp             E
T ss_pred             E
Confidence            3

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK00536 speE spermidine synthase; Provisional

Probab=99.11  E-value=1.5e-09  Score=89.15  Aligned_cols=101  Identities=8%  Similarity=0.038  Sum_probs=80.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C-CCcEEEEeccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V-DHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ....+|++||-||.|.|..+..++++ +  .+|+.||+++++++.+++++....  + ++|++++..    . ...    
T Consensus        68 ~~h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~-~~~----  135 (262)
T PRK00536         68 CTKKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----L-LDL----  135 (262)
T ss_pred             hhCCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----h-hhc----
Confidence            34567899999999999999999998 3  399999999999999999776432  2 478888761    1 111    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       ..++||+|++|..  ..+++++.+.+.|+|||+++...
T Consensus       136 -~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        136 -DIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             -cCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence             1378999999964  34789999999999999999964

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.10  E-value=9.8e-10  Score=86.49  Aligned_cols=164  Identities=15%  Similarity=0.173  Sum_probs=89.2

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHh---hCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL---TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .|.....+..+.-..+|+.|+|+|+..|++++++|.   .+...++|++||++....  .++.++..++.++|++++||+
T Consensus        17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCC
Confidence            456666677788888999999999999999998875   343478999999965432  233344456668999999998


Q ss_pred             hHHHHHHhhcC-CCCCceeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHH
Q 026547          132 LSVLDQLLKDS-ENEGSFDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLD  208 (237)
Q Consensus       132 ~~~~~~~~~~~-~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  208 (237)
                      .+.-.-..... .......+|+.|+.  +.+...-|+...+++++|+++|+.|..+.......... +.. ..-..-...
T Consensus        95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~-~~w-~~g~~p~~a  172 (206)
T PF04989_consen   95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPD-RPW-GPGNNPKTA  172 (206)
T ss_dssp             SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHH
T ss_pred             CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccc-cch-hhhhHHHHH
Confidence            65322111000 01245668888876  35567788888999999999999888643322211101 111 001112566


Q ss_pred             HHHHhhcCCCceEE
Q 026547          209 LNRSLADDPRIQLS  222 (237)
Q Consensus       209 ~~~~l~~~~~~~~~  222 (237)
                      +.+++..+++|+.-
T Consensus       173 v~~fL~~~~~f~iD  186 (206)
T PF04989_consen  173 VKEFLAEHPDFEID  186 (206)
T ss_dssp             HHHHHHTTTTEEEE
T ss_pred             HHHHHHHCCCcEec
Confidence            67778888886644

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.10  E-value=4.3e-10  Score=89.42  Aligned_cols=110  Identities=20%  Similarity=0.310  Sum_probs=80.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC---------------------------
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV---------------------------  120 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------------------  120 (237)
                      ...++.+|||||-+|..++.+|+.+. ...|.|+|+++..++.|+++++..--                           
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            34678999999999999999999987 66899999999999999998754310                           


Q ss_pred             -------CCcEEEEec----cchHHHHHHhhcCCCCCceeEEEEe---------CCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          121 -------DHKINFIES----EALSVLDQLLKDSENEGSFDYAFVD---------ADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       121 -------~~~v~~~~~----d~~~~~~~~~~~~~~~~~~D~i~id---------~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                             .+++.+...    +..+++..      ....||+|++-         ..-.....+|..+.++|.|||++|+.
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                   012222222    22234421      25789999753         22334689999999999999999997


Q ss_pred             CcCC
Q 026547          181 NTLW  184 (237)
Q Consensus       181 ~~~~  184 (237)
                      -=-|
T Consensus       209 PQpW  212 (288)
T KOG2899|consen  209 PQPW  212 (288)
T ss_pred             CCch
Confidence            5544

>PLN02672 methionine S-methyltransferase

Probab=99.08  E-value=2.3e-09  Score=102.75  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             cccHHHHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--------
Q 026547           53 STAPDAGQLMAMLLKLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--------  120 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------  120 (237)
                      ...+.+..++..+....    ++.+|||+|||+|..++.+++..+ ..+|+++|+++.+++.|++|++.+++        
T Consensus        97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~  175 (1082)
T PLN02672         97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY  175 (1082)
T ss_pred             cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence            34466666666643321    246899999999999999999876 67999999999999999999987643        


Q ss_pred             -------CCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547          121 -------DHKINFIESEALSVLDQLLKDSENEGSFDYAFVD  154 (237)
Q Consensus       121 -------~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  154 (237)
                             .++++++++|..+.+...      ..+||+|+.+
T Consensus       176 ~~~~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSN  210 (1082)
T PLN02672        176 DGEGKTLLDRVEFYESDLLGYCRDN------NIELDRIVGC  210 (1082)
T ss_pred             ccccccccccEEEEECchhhhcccc------CCceEEEEEC
Confidence                   247999999987765321      2379999865

>PHA03412 putative methyltransferase; Provisional

Probab=99.08  E-value=2.9e-09  Score=85.60  Aligned_cols=114  Identities=13%  Similarity=0.229  Sum_probs=80.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP--EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .....++.+.  .....+.+|||+|||+|..++.+++.++  +..+|+++|+++.+++.|+++.      .++.++++|+
T Consensus        35 TP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~  106 (241)
T PHA03412         35 TPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADA  106 (241)
T ss_pred             CCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcch
Confidence            3444555443  1223467999999999999999988653  2569999999999999999875      2478899988


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCC---------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADK---------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~---------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+..  +      ..+||+|+.+.+-               .....+++.+.+++++|+.|+-.+++
T Consensus       107 ~~~~--~------~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~  165 (241)
T PHA03412        107 LTTE--F------DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA  165 (241)
T ss_pred             hccc--c------cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence            6532  1      3689999976321               01235777888888888876555554

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.07  E-value=2.1e-09  Score=83.50  Aligned_cols=109  Identities=23%  Similarity=0.285  Sum_probs=72.4

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--CCCcEEEEeccchHHH-HHHhhcCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--VDHKINFIESEALSVL-DQLLKDSE  143 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~~  143 (237)
                      ...++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.+++.++  ...++.+...+.-+.. ....    
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----  115 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----  115 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----
Confidence            356788999999999999999998753 67999999998 9999999998876  4567888777654422 2221    


Q ss_pred             CCCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          144 NEGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       144 ~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+||+|+...   ....+..+++.+.++|+++|.+++..
T Consensus       116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~  156 (173)
T PF10294_consen  116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY  156 (173)
T ss_dssp             S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred             ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            136899998643   24557788899999999998866653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=1.7e-09  Score=87.40  Aligned_cols=115  Identities=15%  Similarity=0.161  Sum_probs=90.6

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ......++.......++..|+|-|+|+|..+.++++++.+.++++.+|..+...+.|++.|++.|+.+++++.+.|....
T Consensus        90 Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~  169 (314)
T KOG2915|consen   90 YTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS  169 (314)
T ss_pred             ecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC
Confidence            34445566677788999999999999999999999999889999999999999999999999999999999999887552


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeE
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGI  176 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~  176 (237)
                      -  +..   ....+|.||+|...++  ..+--+.+.|+.+|.
T Consensus       170 G--F~~---ks~~aDaVFLDlPaPw--~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  170 G--FLI---KSLKADAVFLDLPAPW--EAIPHAAKILKDEGG  204 (314)
T ss_pred             C--ccc---cccccceEEEcCCChh--hhhhhhHHHhhhcCc
Confidence            1  100   1368999999976543  333334456676664

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.07  E-value=4.1e-10  Score=85.80  Aligned_cols=77  Identities=23%  Similarity=0.332  Sum_probs=59.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      +.|+|+.||.|..++.||+...   +|++||+++..++.++.+.+-+|..++|+++++|..+.++.+...    ..+|+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~----~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSN----KIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccc----ccccEE
Confidence            3699999999999999999754   899999999999999999999999999999999999987665211    228999


Q ss_pred             EEeC
Q 026547          152 FVDA  155 (237)
Q Consensus       152 ~id~  155 (237)
                      |++.
T Consensus        74 FlSP   77 (163)
T PF09445_consen   74 FLSP   77 (163)
T ss_dssp             EE--
T ss_pred             EECC
Confidence            9984

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.07  E-value=2.5e-10  Score=90.07  Aligned_cols=145  Identities=15%  Similarity=0.184  Sum_probs=97.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      -+++||+|||+|..+-.+-...   .+++|+|+|..|++.|.++    |+-  -++.++++..+++..     ..++||+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~Y--D~L~~Aea~~Fl~~~-----~~er~DL  191 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLY--DTLYVAEAVLFLEDL-----TQERFDL  191 (287)
T ss_pred             cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cch--HHHHHHHHHHHhhhc-----cCCcccc
Confidence            5799999999999988776543   3899999999999988774    322  256777887777643     2589999


Q ss_pred             EEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC---CCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEee
Q 026547          151 AFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL---WGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHV  224 (237)
Q Consensus       151 i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  224 (237)
                      |..-..   ......+|-.+..+|+|||.+.|+-=.   +.+.+..|+.+        ...-+.+.+......++++.-+
T Consensus       192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~R--------yAH~~~YVr~~l~~~Gl~~i~~  263 (287)
T COG4976         192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQR--------YAHSESYVRALLAASGLEVIAI  263 (287)
T ss_pred             hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhh--------hccchHHHHHHHHhcCceEEEe
Confidence            964321   233456777777999999999996433   22222323211        1223455555555667765533


Q ss_pred             -----------ecCCceEEEEEcC
Q 026547          225 -----------PLGDGITICWRIF  237 (237)
Q Consensus       225 -----------p~~~Gl~i~~~~~  237 (237)
                                 |+..++.|++|+.
T Consensus       264 ~~ttiR~d~g~pv~G~L~iark~~  287 (287)
T COG4976         264 EDTTIRRDAGEPVPGILVIARKKA  287 (287)
T ss_pred             ecccchhhcCCCCCCceEEEecCC
Confidence                       5677888888763

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.07  E-value=5.7e-09  Score=90.00  Aligned_cols=122  Identities=11%  Similarity=0.083  Sum_probs=86.9

Q ss_pred             ccccHHHHHHHH-HHHhhcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547           52 MSTAPDAGQLMA-MLLKLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        52 ~~~~~~~~~~l~-~l~~~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ..+.....+.|. .+....+  +.+|||+|||+|..++.+++..   .+|+++|.++++++.++++++..++. +++++.
T Consensus       176 ~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~  251 (353)
T TIGR02143       176 TQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIR  251 (353)
T ss_pred             ccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence            334454444443 4434332  4579999999999999999864   38999999999999999999999885 599999


Q ss_pred             ccchHHHHHHhh-------c--CCCCCceeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEe
Q 026547          129 SEALSVLDQLLK-------D--SENEGSFDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       129 ~d~~~~~~~~~~-------~--~~~~~~~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|+.++++....       .  +.....||+||+|.+... ....++.+.+   +++++.++
T Consensus       252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             cCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence            999888764211       0  000124899999987554 4566666654   67887775

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=3.9e-09  Score=92.76  Aligned_cols=122  Identities=16%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             CCccccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547           50 AMMSTAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN  125 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  125 (237)
                      .|....+...+.|...+.    ..+.+++||+-||.|..++.+|+.   ..+|+|+|+++++++.|+++.+.+++.+ ++
T Consensus       269 sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~  344 (432)
T COG2265         269 SFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VE  344 (432)
T ss_pred             CceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EE
Confidence            556677777777766543    345679999999999999999964   4599999999999999999999999977 99


Q ss_pred             EEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEe
Q 026547          126 FIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYW-NYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       126 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (237)
                      |..+++.++.+...+    ...+|.|++|.+..... ++++.+ ..++|..++.++
T Consensus       345 f~~~~ae~~~~~~~~----~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS  395 (432)
T COG2265         345 FIAGDAEEFTPAWWE----GYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS  395 (432)
T ss_pred             EEeCCHHHHhhhccc----cCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence            999999998887521    25889999998876655 666666 456666666664

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.06  E-value=2.9e-09  Score=90.12  Aligned_cols=96  Identities=16%  Similarity=0.068  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC----CCcEEEEeccchHHHHHHhhcCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV----DHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++.+..+.    ..++.+..+|..+.          .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence            5679999999999999999974   56999999999999999999876532    13578888886442          3


Q ss_pred             CceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEE
Q 026547          146 GSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       146 ~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ++||+|++.....+     ....++.+. .+.+||+++.
T Consensus       211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs  248 (315)
T PLN02585        211 GKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIIS  248 (315)
T ss_pred             CCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEE
Confidence            78999986533222     223455554 3466777664

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.1e-09  Score=85.26  Aligned_cols=112  Identities=17%  Similarity=0.214  Sum_probs=85.6

Q ss_pred             HHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCC---------CCcEEE
Q 026547           58 AGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGV---------DHKINF  126 (237)
Q Consensus        58 ~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~---------~~~v~~  126 (237)
                      .+..+..|-. ..++-++||+|+|+||++..+++.+...+. .+|||.-++.++.+++++...-.         ..++.+
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            3444544443 456779999999999999999977654444 59999999999999999976541         146788


Q ss_pred             EeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          127 IESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +.||.....+.       ..+||.|++.+..+..   .+.+...|++||.|++
T Consensus       149 vvGDgr~g~~e-------~a~YDaIhvGAaa~~~---pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  149 VVGDGRKGYAE-------QAPYDAIHVGAAASEL---PQELLDQLKPGGRLLI  191 (237)
T ss_pred             EeCCccccCCc-------cCCcceEEEccCcccc---HHHHHHhhccCCeEEE
Confidence            99999876554       4899999998765543   4567788899998887

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.05  E-value=3.9e-09  Score=84.93  Aligned_cols=130  Identities=8%  Similarity=-0.042  Sum_probs=87.6

Q ss_pred             CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH------h---
Q 026547           47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK------K---  117 (237)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~------~---  117 (237)
                      .++......+...+.+..+. ..++.+||..|||.|..+.+||..   +-+|+|+|+++..++.+.+...      .   
T Consensus        21 ~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~   96 (226)
T PRK13256         21 VGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGND   96 (226)
T ss_pred             CCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccc
Confidence            34434444555444444432 234579999999999999999984   6789999999999988755210      0   


Q ss_pred             --cCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          118 --AGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       118 --~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                        .-....++++++|..+.-+..    ...++||+|+-.     .+......+.+.+.++|+|||.+++-....
T Consensus        97 ~~~~~~~~i~~~~gD~f~l~~~~----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256         97 YKLYKGDDIEIYVADIFNLPKIA----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             cceeccCceEEEEccCcCCCccc----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence              001236899999998863210    013689998643     233445688999999999999887765443

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.04  E-value=1.4e-08  Score=85.03  Aligned_cols=127  Identities=23%  Similarity=0.269  Sum_probs=100.9

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      ..+......+...+....++..|||++++.|.=|.+++..+...+.|++.|+++..+...++++++.|..+ +.+...|+
T Consensus        67 ~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~  145 (283)
T PF01189_consen   67 FYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADA  145 (283)
T ss_dssp             EEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHH
T ss_pred             EEecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecc
Confidence            33445555555666677788899999999999999999999878999999999999999999999999864 77777888


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccC----CCCeEEEEeCc
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLL----KVGGIAVYDNT  182 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L----~~gG~lv~~~~  182 (237)
                      ....+...     ...||.|++|++.+..                         .+.++.+.+.+    +|||.+|...+
T Consensus       146 ~~~~~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  146 RKLDPKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             HHHHHHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             cccccccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            77765442     2469999999754221                         35677788999    99999999888


Q ss_pred             CC
Q 026547          183 LW  184 (237)
Q Consensus       183 ~~  184 (237)
                      ..
T Consensus       221 S~  222 (283)
T PF01189_consen  221 SL  222 (283)
T ss_dssp             HH
T ss_pred             cH
Confidence            64

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.04  E-value=5.4e-09  Score=81.67  Aligned_cols=122  Identities=20%  Similarity=0.218  Sum_probs=89.8

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC--------EEEEEeCCchHHHHHHHHHHhcCCCCc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG--------QIMAIDVNRETYEIGLPVIKKAGVDHK  123 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~--------~v~~vD~~~~~~~~a~~~~~~~~~~~~  123 (237)
                      -++.+..+..|..++...++..|||--||+|...+..+.......        +++|.|+++.+++.++++++.+|+...
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            346788899999999988889999999999999887665544222        499999999999999999999999888


Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-----------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADK-----------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +.+.+.|+.+.-  +     ..+++|.|+.|.+-           .-+..+++.+.+.+++..++++.
T Consensus        90 i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   90 IDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             eEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            999999998764  1     14799999999542           12456778888899997677664

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.03  E-value=4.3e-09  Score=88.34  Aligned_cols=98  Identities=15%  Similarity=0.132  Sum_probs=76.3

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      +..++ +++.....+...+...++.+|||||||+|..|..++..   ..+|+++|+++.+++.+++++...+..++++++
T Consensus        15 GQnFL-~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii   90 (294)
T PTZ00338         15 GQHIL-KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVI   90 (294)
T ss_pred             Ccccc-CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence            33443 45555555555566677889999999999999999875   458999999999999999999877756789999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCCc
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADKV  158 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~  158 (237)
                      ++|+.+..         ...||.|+.+.+-.
T Consensus        91 ~~Dal~~~---------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         91 EGDALKTE---------FPYFDVCVANVPYQ  112 (294)
T ss_pred             ECCHhhhc---------ccccCEEEecCCcc
Confidence            99997752         25789988776543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.03  E-value=3.8e-09  Score=84.91  Aligned_cols=127  Identities=17%  Similarity=0.219  Sum_probs=87.2

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh-cC-------
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK-AG-------  119 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~-------  119 (237)
                      ++......+...+++.. ....++.+||..|||.|+-..+||..   +.+|+|+|+++.+++.+.+.... ..       
T Consensus        16 ~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~   91 (218)
T PF05724_consen   16 PWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF   91 (218)
T ss_dssp             TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE
T ss_pred             CCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccce
Confidence            44444556766666666 34556679999999999999999984   67999999999999887432211 00       


Q ss_pred             ---CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          120 ---VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       120 ---~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                         ...+|+++++|..+.-+..      .++||+|+=.     .+......|.+.+.++|+|||.+++-...+
T Consensus        92 ~~~~~~~i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~  158 (218)
T PF05724_consen   92 KRYQAGRITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEY  158 (218)
T ss_dssp             EEETTSSEEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES
T ss_pred             eeecCCceEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEc
Confidence               1246899999998864322      2589999743     234456789999999999999954443433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.02  E-value=3e-09  Score=83.64  Aligned_cols=130  Identities=15%  Similarity=0.094  Sum_probs=93.1

Q ss_pred             cHHHHHHHHHHHhhcC-CC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLLKLVN-AK-KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~-~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+....++..|....+ .. +|||||||+|-.+.++|.++| ..+...-|+++......+.++++.++.+-...+.-|+.
T Consensus         8 eRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~   86 (204)
T PF06080_consen    8 ERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVS   86 (204)
T ss_pred             hhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecC
Confidence            4455556666655433 33 499999999999999999998 88999999999998899999998887653344555554


Q ss_pred             HHHHHHh-hcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          133 SVLDQLL-KDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       133 ~~~~~~~-~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      +...... ..+...++||.||+-.     .......+|+.+.++|++||.+++-..+..
T Consensus        87 ~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~  145 (204)
T PF06080_consen   87 APPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR  145 (204)
T ss_pred             CCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence            4311111 0001246899998642     233356788889999999999999877753

The function of this family is unknown.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.02  E-value=6.6e-09  Score=89.84  Aligned_cols=101  Identities=15%  Similarity=0.103  Sum_probs=86.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      -+|||+.||+|..++.++...+...+|+++|++++.++.+++|++.++.. +++++++|+...+...      ..+||+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI  118 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI  118 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence            48999999999999999986532368999999999999999999988764 5899999999887754      3679999


Q ss_pred             EEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          152 FVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       152 ~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++|.. ....++++.+.+.+++||++.+.
T Consensus       119 dlDPf-Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       119 DIDPF-GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             EeCCC-CCcHHHHHHHHHhcccCCEEEEE
Confidence            99984 44468999999999999999886

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.99  E-value=4.8e-09  Score=88.87  Aligned_cols=122  Identities=19%  Similarity=0.160  Sum_probs=100.7

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      |.+.....+....+-....+..|||.-+|.|+.++.+|+...  .+|+++|++|..++..+++++-+++.+++..++||+
T Consensus       170 ~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~  247 (341)
T COG2520         170 YFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA  247 (341)
T ss_pred             EECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence            334455555555555566789999999999999999998643  349999999999999999999999998899999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+..+.+       ..+|-|++..... ..+++....+.+++||+|.++...
T Consensus       248 rev~~~~-------~~aDrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         248 REVAPEL-------GVADRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             HHhhhcc-------ccCCEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEecc
Confidence            9987754       7899999887653 356788888999999999998765

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.99  E-value=1.3e-09  Score=84.58  Aligned_cols=98  Identities=13%  Similarity=0.221  Sum_probs=73.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||.|....++...  ++.+.+|+|++++.+..+.++    |    +.++++|+.+-+..+     ++++|
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f-----~d~sF   76 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADF-----PDQSF   76 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhC-----CCCCc
Confidence            45679999999999998888774  478999999999987766553    3    779999999988765     46899


Q ss_pred             eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |.|++...-   .+....++++.|.-+ .+++-+-|.
T Consensus        77 D~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF  112 (193)
T PF07021_consen   77 DYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF  112 (193)
T ss_pred             cEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence            999987543   334556666655433 366666665

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.98  E-value=2.2e-09  Score=84.97  Aligned_cols=105  Identities=16%  Similarity=0.280  Sum_probs=81.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGV-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++.+|||.+.|-||.++..++.   ++ +|+++|.+|..++.|.-|-=..++ +..++++.||+.+.++.+     .
T Consensus       131 ~~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~  202 (287)
T COG2521         131 KVKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----D  202 (287)
T ss_pred             ccccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----C
Confidence            3456889999999999999988774   55 999999999999877543211111 235899999999999876     4


Q ss_pred             CCceeEEEEeCCC------cCcHHHHHHHHccCCCCeEEEE
Q 026547          145 EGSFDYAFVDADK------VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       145 ~~~~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +++||+|+-|.+.      -...++++++.+.|++||.++-
T Consensus       203 D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         203 DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            6789999988542      2246899999999999999874

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=9.6e-09  Score=79.15  Aligned_cols=88  Identities=17%  Similarity=0.329  Sum_probs=69.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ..++.|+|+|||+|..++..+..-  ..+|+|+|+++++++.+++|..+.  ..+++++.+|+.++          ..++
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~----------~~~~  109 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDF----------RGKF  109 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhc----------CCcc
Confidence            466789999999999988776543  369999999999999999999883  35799999999887          5889


Q ss_pred             eEEEEeCC-----CcCcHHHHHHHHcc
Q 026547          149 DYAFVDAD-----KVNYWNYHERLMKL  170 (237)
Q Consensus       149 D~i~id~~-----~~~~~~~~~~~~~~  170 (237)
                      |.++.+.+     ...-..|++...+.
T Consensus       110 dtvimNPPFG~~~rhaDr~Fl~~Ale~  136 (198)
T COG2263         110 DTVIMNPPFGSQRRHADRPFLLKALEI  136 (198)
T ss_pred             ceEEECCCCccccccCCHHHHHHHHHh
Confidence            98888743     12234566666554

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.96  E-value=7.9e-09  Score=80.80  Aligned_cols=96  Identities=23%  Similarity=0.273  Sum_probs=81.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      +++|||+|.|.-++.+|-..| +.+++.+|.....+...+...++.|+. +++++++.+.+  ..      ...+||+|+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence            799999999999999998887 889999999999999999999999996 59999999988  11      158999999


Q ss_pred             EeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          153 VDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       153 id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .-+.. ....+++.+.+++++||.+++
T Consensus       121 aRAv~-~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  121 ARAVA-PLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             EESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred             eehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence            88755 557889999999999999886

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.94  E-value=6.5e-09  Score=86.90  Aligned_cols=94  Identities=12%  Similarity=0.119  Sum_probs=74.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      .+++..+ ...++..+||++||.|+.+..+++.++++++|+|+|.++++++.+++.+.+   .++++++++|..++...+
T Consensus         9 ~Evl~~L-~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l   84 (296)
T PRK00050          9 DEVVDAL-AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL   84 (296)
T ss_pred             HHHHHhh-CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence            3444444 234567999999999999999999987679999999999999999998865   368999999998876555


Q ss_pred             hhcCCCCCceeEEEEeCCCcC
Q 026547          139 LKDSENEGSFDYAFVDADKVN  159 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~~  159 (237)
                      .+   ...++|.|++|.+.+.
T Consensus        85 ~~---~~~~vDgIl~DLGvSs  102 (296)
T PRK00050         85 AE---GLGKVDGILLDLGVSS  102 (296)
T ss_pred             Hc---CCCccCEEEECCCccc
Confidence            21   1238999999866544

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.94  E-value=4.9e-09  Score=85.78  Aligned_cols=104  Identities=14%  Similarity=0.157  Sum_probs=81.6

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +.......+.++|||||.|.|..+..+++..| +.+++.+|+ |+.++.+++       .++|+++.+|..+.+      
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~------  156 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL------  156 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC------
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh------
Confidence            33334455678999999999999999999998 899999998 888888888       578999999987442      


Q ss_pred             CCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCC--eEEEEeCcCC
Q 026547          142 SENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVG--GIAVYDNTLW  184 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~g--G~lv~~~~~~  184 (237)
                         +. +|++++...-++     ....++++.+.|+||  |.|++.+.+.
T Consensus       157 ---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  157 ---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL  202 (241)
T ss_dssp             ---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred             ---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence               24 999998754433     356899999999999  9999888775

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.93  E-value=8.9e-09  Score=91.07  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=79.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .+.|+|+|||+|-+....+++.   ....+|++||.++.+....++.++..++.++|+++++|+.++-.        ..+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence            4689999999999987776654   12469999999998888888877888998999999999988733        479


Q ss_pred             eeEEEEe-----CCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVD-----ADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .|+|+.-     +..+..++.+....+.|+|||+++=+..
T Consensus       259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~  298 (448)
T PF05185_consen  259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSY  298 (448)
T ss_dssp             EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred             eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence            9999743     2344567888888899999999886443

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.93  E-value=1.4e-08  Score=83.88  Aligned_cols=94  Identities=15%  Similarity=0.079  Sum_probs=72.7

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      +..+. +++...+.+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++..   .++++++
T Consensus         8 GQnfl-~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii   80 (258)
T PRK14896          8 GQHFL-IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEII   80 (258)
T ss_pred             Ccccc-CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEE
Confidence            33443 45666666666666677889999999999999999986   45899999999999999988754   2469999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCC
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADK  157 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~  157 (237)
                      ++|+.+..         ...||.|+.+.+.
T Consensus        81 ~~D~~~~~---------~~~~d~Vv~NlPy  101 (258)
T PRK14896         81 EGDALKVD---------LPEFNKVVSNLPY  101 (258)
T ss_pred             EeccccCC---------chhceEEEEcCCc
Confidence            99997752         2457988876543

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.90  E-value=1.8e-08  Score=85.25  Aligned_cols=83  Identities=12%  Similarity=0.255  Sum_probs=65.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEe-ccchHHHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIE-SEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~  147 (237)
                      +..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.++++++. .+..+.......   ..+.
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence            356999999999998888877665 789999999999999999999999 7888898864 444444332211   1468


Q ss_pred             eeEEEEeCC
Q 026547          148 FDYAFVDAD  156 (237)
Q Consensus       148 ~D~i~id~~  156 (237)
                      ||+|+++.+
T Consensus       190 fDlivcNPP  198 (321)
T PRK11727        190 FDATLCNPP  198 (321)
T ss_pred             eEEEEeCCC
Confidence            999998753

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.88  E-value=2.2e-08  Score=84.40  Aligned_cols=119  Identities=18%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-c
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-E  130 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d  130 (237)
                      .++.|..++.+-+|+...++..|||=-||||...+....-   +++++|.|++..+++-|+.|++.+++.+ ..+... |
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D  254 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD  254 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence            3577999999999999999999999999999998877653   7899999999999999999999999765 444444 8


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +....  +     ...++|.|..|.+-            +.+.++++.+.+.|++||.+++-.
T Consensus       255 a~~lp--l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~  310 (347)
T COG1041         255 ATNLP--L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA  310 (347)
T ss_pred             cccCC--C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence            76652  3     13469999998531            125678888889999999998853

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.87  E-value=2.9e-08  Score=82.67  Aligned_cols=101  Identities=14%  Similarity=0.014  Sum_probs=72.7

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +++...+.+...+...++.+|||||||+|..+..++...   .+|+++|+++.+++.+++++..    ++++++++|+.+
T Consensus        26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~   98 (272)
T PRK00274         26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALK   98 (272)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhc
Confidence            455555555555566677899999999999999999874   3899999999999999987642    479999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      ....       .-.++.|+.+.+-.....++..+.
T Consensus        99 ~~~~-------~~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274         99 VDLS-------ELQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             CCHH-------HcCcceEEEeCCccchHHHHHHHH
Confidence            5211       011477776655444445555554

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.86  E-value=7.4e-09  Score=81.31  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=74.0

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .....++..|+|.-||.|+.++.++...   ..|++||++|..+.-|+.+++-+|+.++|+|++||.++....++..   
T Consensus        89 v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---  162 (263)
T KOG2730|consen   89 VVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---  162 (263)
T ss_pred             HHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---
Confidence            3344478899999999999999998854   4899999999999999999999999999999999999998887544   


Q ss_pred             CCceeEEEEeCC
Q 026547          145 EGSFDYAFVDAD  156 (237)
Q Consensus       145 ~~~~D~i~id~~  156 (237)
                      ...+|+||...+
T Consensus       163 K~~~~~vf~spp  174 (263)
T KOG2730|consen  163 KIKYDCVFLSPP  174 (263)
T ss_pred             hheeeeeecCCC
Confidence            466889997654

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.86  E-value=9.8e-09  Score=86.13  Aligned_cols=105  Identities=19%  Similarity=0.303  Sum_probs=81.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..+++.|||+|||+|-++++.|++.  ..+|++||.+. +++.|++.+..+++.+.|++++|.+.+.  .++     .++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP-----~eK  127 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDI--ELP-----VEK  127 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEE--ecC-----ccc
Confidence            6789999999999999999999875  46999999764 6699999999999999999999999886  331     389


Q ss_pred             eeEEEEeCC--CcCcHHHHHHHH----ccCCCCeEEEEeCc
Q 026547          148 FDYAFVDAD--KVNYWNYHERLM----KLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~--~~~~~~~~~~~~----~~L~~gG~lv~~~~  182 (237)
                      .|+|+....  .-.+...++.+.    +.|+|||++.-+-+
T Consensus       128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a  168 (346)
T KOG1499|consen  128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA  168 (346)
T ss_pred             eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence            999975432  111233444443    79999999876554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.86  E-value=3.5e-08  Score=88.93  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=84.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ....+||||||.|.++..+|...| +..++|+|+....+..+.+...+.++. ++.++.+|+......+     ..+++|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~  419 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD  419 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence            356899999999999999999988 789999999999999888888888875 5888888875444433     247899


Q ss_pred             EEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547          150 YAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       150 ~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .|++..+-+.           .+++++.+.+.|+|||.|.+.
T Consensus       420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            9988643211           468999999999999988763

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.85  E-value=3.8e-08  Score=81.16  Aligned_cols=101  Identities=16%  Similarity=0.083  Sum_probs=72.4

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +++...+.+...+...++.+|||||||+|..+..+++..+   +|+++|+++.+++.+++++..   .++++++++|+.+
T Consensus        13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~   86 (253)
T TIGR00755        13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK   86 (253)
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence            4555555555555666788999999999999999998754   699999999999999987743   3569999999877


Q ss_pred             HHHHHhhcCCCCCcee---EEEEeCCCcCcHHHHHHHHc
Q 026547          134 VLDQLLKDSENEGSFD---YAFVDADKVNYWNYHERLMK  169 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D---~i~id~~~~~~~~~~~~~~~  169 (237)
                      ...         ..+|   +|+.+.........+..+..
T Consensus        87 ~~~---------~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        87 VDL---------PDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             CCh---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            532         2344   66655544444455555543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=4.4e-08  Score=74.84  Aligned_cols=104  Identities=21%  Similarity=0.214  Sum_probs=80.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      .++.++|||||+|+.+.+++....++..+.++|++|.+++..++-.+.++.  ++.+++.|....+.        .++.|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD  112 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD  112 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence            388999999999999999999887788999999999999999888877664  47888888777654        48999


Q ss_pred             EEEEeCCC--------------------cC----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          150 YAFVDADK--------------------VN----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~~~--------------------~~----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +++.+.+-                    .+    ...++..+-.+|.|.|++.+-.+.
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~  170 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR  170 (209)
T ss_pred             EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence            98765210                    01    234555555788999998875443

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.84  E-value=1.4e-08  Score=80.40  Aligned_cols=90  Identities=14%  Similarity=0.213  Sum_probs=65.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..++...  ...++++|+++++++.+++.        +++++++|+.+.++.+     ..++|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf   76 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF   76 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence            356799999999999998887653  45789999999998887641        3678888876643222     14789


Q ss_pred             eEEEEeCC---CcCcHHHHHHHHccCCC
Q 026547          149 DYAFVDAD---KVNYWNYHERLMKLLKV  173 (237)
Q Consensus       149 D~i~id~~---~~~~~~~~~~~~~~L~~  173 (237)
                      |+|++...   ..+...+++++.+.+++
T Consensus        77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        77 DYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            99998753   23455677777776554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.82  E-value=1.3e-07  Score=77.68  Aligned_cols=121  Identities=19%  Similarity=0.203  Sum_probs=94.8

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      .|.....+-+||||.||.|...+......+. ...|...|.++..++..++.+++.|+.+.++|.++|+.+.-. +++- 
T Consensus       129 ~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~l-  206 (311)
T PF12147_consen  129 RLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAAL-  206 (311)
T ss_pred             HHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhcc-
Confidence            3444457889999999999998888777774 368999999999999999999999999878999999988532 2211 


Q ss_pred             CCCCceeEEEEeCCCcC------cHHHHHHHHccCCCCeEEEEeCcCCCCcc
Q 026547          143 ENEGSFDYAFVDADKVN------YWNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (237)
                        ...++++++.+-.+.      ....+..+...+.|||++|..+--|+...
T Consensus       207 --~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl  256 (311)
T PF12147_consen  207 --DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL  256 (311)
T ss_pred             --CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence              466899988764333      23457777889999999998876665543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.81  E-value=7.9e-09  Score=82.30  Aligned_cols=105  Identities=20%  Similarity=0.212  Sum_probs=76.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      +|||+|||.|.....+.+..+. +-+|+++|.+|.+++..+++-....  .++...+.|....-  + ..+...+++|+|
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~--~-~~~~~~~svD~i  148 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPS--L-KEPPEEGSVDII  148 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchh--c-cCCCCcCccceE
Confidence            8999999999999999887762 2799999999999998888654322  35555555543211  1 112345788877


Q ss_pred             EE---e--CCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          152 FV---D--ADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       152 ~i---d--~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+   -  .........++.+.++|+|||.|++-|.
T Consensus       149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence            42   2  2355577899999999999999999876

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.79  E-value=6.7e-09  Score=82.72  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           59 GQLMAMLLKLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~~~~~~-~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ..++..++...+.. .++|+|||+|..++.+|.+..   +|+++|+++.+++.|++.....-......+...+..+++. 
T Consensus        21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-   96 (261)
T KOG3010|consen   21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-   96 (261)
T ss_pred             HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-
Confidence            34555566655554 899999999987778887754   8999999999999888864322111112222222223321 


Q ss_pred             HhhcCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCe-EEEEeC
Q 026547          138 LLKDSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGG-IAVYDN  181 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG-~lv~~~  181 (237)
                            +.++.|+|.+....  -+...+++.+.++||+.| ++++=+
T Consensus        97 ------~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen   97 ------GEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWN  137 (261)
T ss_pred             ------CCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEE
Confidence                  25899999865322  246789999999999876 777633

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.78  E-value=2.2e-08  Score=78.83  Aligned_cols=95  Identities=22%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.-|||||||+|.++..+..   ++-..+|+|+|+.|++.|.+.-  ..    -.++.+|.=+-++      +..++||-
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~e--~e----gdlil~DMG~Glp------frpGtFDg  115 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVERE--LE----GDLILCDMGEGLP------FRPGTFDG  115 (270)
T ss_pred             CcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHhh--hh----cCeeeeecCCCCC------CCCCccce
Confidence            67899999999999988775   3568999999999999998732  11    2466777655444      34699998


Q ss_pred             EEEe--------CCC------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVD--------ADK------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id--------~~~------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++.-        +++      .....||..+...|++|+..|+.
T Consensus       116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            8632        221      22346788889999999988875

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.78  E-value=4.1e-08  Score=78.19  Aligned_cols=98  Identities=21%  Similarity=0.278  Sum_probs=83.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc-ee
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS-FD  149 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~-~D  149 (237)
                      +++++|||+|.|.-++.+|-..| +.+|+-+|.....+...+....+.++. +++++++.++++...        .. ||
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence            68999999999999999997777 777999999999999999999999985 599999999887442        23 99


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +|..-+.. ....+.+.+.+++++||.+++
T Consensus       138 ~vtsRAva-~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         138 VVTSRAVA-SLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEEeehcc-chHHHHHHHHHhcccCCcchh
Confidence            99877644 456788899999999888764

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.73  E-value=2.1e-07  Score=78.47  Aligned_cols=108  Identities=19%  Similarity=0.272  Sum_probs=87.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH--HHHhcCC----CCcEEEEeccchHHHHHHhhc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLP--VIKKAGV----DHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~--~~~~~~~----~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ....++||-+|-|.|.....+.+. |.-.+|+-+|++|.+++.++.  .++..+-    ++|++++..|+.+++...   
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---  362 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---  362 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence            356789999999999999998875 546899999999999999983  3333321    479999999999999876   


Q ss_pred             CCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          142 SENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                         .+.||.|++|...++        -.+|+..+.+.|+++|.+|+...
T Consensus       363 ---~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         363 ---ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             ---cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence               479999999964333        25788888899999999999643

>PRK04148 hypothetical protein; Provisional

Probab=98.71  E-value=1.9e-07  Score=68.75  Aligned_cols=95  Identities=13%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ++++.......++.+|||||||+|. .+..|++.   +..|+++|+++..++.++++        .++++.+|..+.-..
T Consensus         5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~   73 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLE   73 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHH
Confidence            4444444444456889999999997 67677753   67999999999988888775        268899998876555


Q ss_pred             HhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc
Q 026547          138 LLKDSENEGSFDYAFVDADKVNYWNYHERLMKL  170 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~  170 (237)
                      +      -+.+|+|+.--........+-.+.+.
T Consensus        74 ~------y~~a~liysirpp~el~~~~~~la~~  100 (134)
T PRK04148         74 I------YKNAKLIYSIRPPRDLQPFILELAKK  100 (134)
T ss_pred             H------HhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence            4      37899998776666655555555553

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.65  E-value=1.6e-07  Score=77.56  Aligned_cols=105  Identities=20%  Similarity=0.266  Sum_probs=69.1

Q ss_pred             CCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-hcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           71 AKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-KAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        71 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      |++|+=||||. -.+++.+++....+..|+++|+++++.+.+++.++ ..|+..++.|+.+|..+....+       ..|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~~  193 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KEY  193 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----------
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------ccC
Confidence            56999999995 44666777654447899999999999999999888 5677888999999987764333       789


Q ss_pred             eEEEEeCCCc----CcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKV----NYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+||+.+-..    .=.+.++.+.+.++||+.+++-..
T Consensus       194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence            9999886544    557899999999999999998643

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=7.6e-07  Score=72.81  Aligned_cols=108  Identities=11%  Similarity=0.008  Sum_probs=77.2

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      +..++ .+....+-+-..+...++..|||||+|.|..|..+++.   ..+|+++|+++.+++..++.+.   ..++++++
T Consensus         9 GQnFL-~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi   81 (259)
T COG0030           9 GQNFL-IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVI   81 (259)
T ss_pred             ccccc-cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEE
Confidence            44444 34444445555566667889999999999999999986   4589999999999999988875   33579999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      ++|++.+.-.-      ...++.|+.+.+-.-...++..+.
T Consensus        82 ~~DaLk~d~~~------l~~~~~vVaNlPY~Isspii~kll  116 (259)
T COG0030          82 NGDALKFDFPS------LAQPYKVVANLPYNISSPILFKLL  116 (259)
T ss_pred             eCchhcCcchh------hcCCCEEEEcCCCcccHHHHHHHH
Confidence            99998863210      016788887766554455544444

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.65  E-value=3.8e-07  Score=78.72  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=72.3

Q ss_pred             CCccccHHHHHHHHHHHh-hcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547           50 AMMSTAPDAGQLMAMLLK-LVN--AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~-~~~--~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      .|..+.+...+.|...+. ..+  +..|||+.||.|..++.+|...   .+|+|||.++++++.|+++++.+++. +++|
T Consensus       173 sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f  248 (352)
T PF05958_consen  173 SFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEF  248 (352)
T ss_dssp             S---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEE
T ss_pred             cCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceE
Confidence            455666766666655433 222  3489999999999999999854   59999999999999999999999985 5999


Q ss_pred             EeccchHHHHHHhhc---------CCCCCceeEEEEeCCCcCcH-HHHHHHH
Q 026547          127 IESEALSVLDQLLKD---------SENEGSFDYAFVDADKVNYW-NYHERLM  168 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~---------~~~~~~~D~i~id~~~~~~~-~~~~~~~  168 (237)
                      +.+++.++...+...         ......+|+|++|.+..... ..++.+.
T Consensus       249 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~  300 (352)
T PF05958_consen  249 IRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK  300 (352)
T ss_dssp             EE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred             EEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence            999887754432110         00023689999998765543 4555553

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.62  E-value=2.4e-07  Score=79.02  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=70.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC---------CCCcEEEEeccchH-HHHHHh
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG---------VDHKINFIESEALS-VLDQLL  139 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~-~~~~~~  139 (237)
                      ++.+|||+|||-|.-..-+..+  .-..++|+|++...++.|+++++...         ..-...++.+|... .+....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            5689999999988866555553  24699999999999999999984321         11235678888653 222111


Q ss_pred             hcCCCCCceeEEEEeCC-------CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDAD-------KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .  +...+||+|-+-..       ......+++.+...|+|||+++..-
T Consensus       140 ~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  140 P--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             S--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            0  11259999976532       2334678999999999999998743

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=1.2e-07  Score=69.81  Aligned_cols=92  Identities=20%  Similarity=0.331  Sum_probs=70.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ..+++++|+|||.|..+  ++..+++...|+|+|++|+.++.+++|.++..+.  +++.++|..+....       .+.|
T Consensus        47 iEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g~f  115 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GGIF  115 (185)
T ss_pred             ccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CCeE
Confidence            46789999999999987  4444565778999999999999999999988874  68999999886543       3889


Q ss_pred             eEEEEeCCC-----cCcHHHHHHHHccC
Q 026547          149 DYAFVDADK-----VNYWNYHERLMKLL  171 (237)
Q Consensus       149 D~i~id~~~-----~~~~~~~~~~~~~L  171 (237)
                      |.++++.+-     ..-.++++...++.
T Consensus       116 DtaviNppFGTk~~~aDm~fv~~al~~~  143 (185)
T KOG3420|consen  116 DTAVINPPFGTKKKGADMEFVSAALKVA  143 (185)
T ss_pred             eeEEecCCCCcccccccHHHHHHHHHHH
Confidence            999988531     11234555555443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.57  E-value=2.9e-07  Score=70.59  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=60.2

Q ss_pred             EEEeCCchHHHHHHHHHHhc--CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCC
Q 026547           99 MAIDVNRETYEIGLPVIKKA--GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKV  173 (237)
Q Consensus        99 ~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~  173 (237)
                      +|+|+|++|++.|+++.+..  +..++++++++|+.+. +      ...++||+|++...   ..+....++++.+.|+|
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p------~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-P------FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-C------CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            48999999999998776532  2235699999999775 2      12578999987643   34567889999999999


Q ss_pred             CeEEEEeCcC
Q 026547          174 GGIAVYDNTL  183 (237)
Q Consensus       174 gG~lv~~~~~  183 (237)
                      ||.+++.+..
T Consensus        74 GG~l~i~d~~   83 (160)
T PLN02232         74 GSRVSILDFN   83 (160)
T ss_pred             CeEEEEEECC
Confidence            9999887654

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.56  E-value=1.9e-07  Score=75.50  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE-EEeccchHHH-HHHhhcCCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN-FIESEALSVL-DQLLKDSENEG  146 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~~~~~~~  146 (237)
                      .+++.|||+|||+|.++..+++. + ..+|+++|+++.++..   .+++   .+++. +-..|+.... ....   ....
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~~~~~~~~---~d~~  142 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRYVTPADIF---PDFA  142 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCcccCCHhHcC---CCce
Confidence            35679999999999999999985 2 4689999999987754   1111   12232 2222333211 1110   0125


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+|++|+..     ...+..+.++|++ |.+++
T Consensus       143 ~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       143 TFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            788877654     2357778888898 65553

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=5.6e-07  Score=79.02  Aligned_cols=124  Identities=16%  Similarity=0.176  Sum_probs=91.1

Q ss_pred             CCccccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547           50 AMMSTAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN  125 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  125 (237)
                      .|.......++.|+..+.    ....+.+||+.||+|.+++.+|+..   .+|+|||++++.++.|+.+...+|++ +.+
T Consensus       359 AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~  434 (534)
T KOG2187|consen  359 AFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NAT  434 (534)
T ss_pred             hhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-cee
Confidence            344566777777777655    4456789999999999999999864   49999999999999999999999986 499


Q ss_pred             EEeccchHHHHHHhhcCCCCCcee-EEEEeCCCcC-cHHHHHHHHccCCCCeEEEE
Q 026547          126 FIESEALSVLDQLLKDSENEGSFD-YAFVDADKVN-YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       126 ~~~~d~~~~~~~~~~~~~~~~~~D-~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |++|.+++.++.+...  ..++-+ ++++|.+... ...++..+...-++.-.+.+
T Consensus       435 Fi~gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv  488 (534)
T KOG2187|consen  435 FIVGQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV  488 (534)
T ss_pred             eeecchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence            9999999988887433  113455 5567765443 34455555554445554444

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.52  E-value=4.2e-07  Score=75.84  Aligned_cols=99  Identities=14%  Similarity=0.193  Sum_probs=75.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+++.|||+|||+|..+.+.+.+.  ..+|++||.+ +|.++|++.++.+.+.+||.++.|-.++.  ++      +++.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~  244 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV  244 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence            357899999999999988777753  4699999975 69999999999999999999999998875  22      4889


Q ss_pred             eEEEEeCC-----CcCcHHHHHHHHccCCCCeEEE
Q 026547          149 DYAFVDAD-----KVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       149 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      |+|+....     .+...+-+--.++.|+|.|.+.
T Consensus       245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            99975421     1122222333448999999875

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.51  E-value=1.5e-06  Score=70.58  Aligned_cols=90  Identities=12%  Similarity=0.081  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      +....-+..-+...+++.|||||.|+|..|..+.+.   +.+|+++|++|.++....+.++....+.+.++++||....-
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD  120 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence            455555555566778899999999999999999985   56999999999999999999887777789999999987651


Q ss_pred             HHHhhcCCCCCceeEEEEeCCC
Q 026547          136 DQLLKDSENEGSFDYAFVDADK  157 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~  157 (237)
                               ...||.++.+.+.
T Consensus       121 ---------~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  121 ---------LPRFDGCVSNLPY  133 (315)
T ss_pred             ---------CcccceeeccCCc
Confidence                     3678998876543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.51  E-value=3.6e-06  Score=68.36  Aligned_cols=133  Identities=14%  Similarity=0.071  Sum_probs=86.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +..++||||.|.|..|..++..+.   +|++.|.|+.|..    .+++.|.    +++.  ..++ ..      ...+||
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~----~vl~--~~~w-~~------~~~~fD  153 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF----TVLD--IDDW-QQ------TDFKFD  153 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC----eEEe--hhhh-hc------cCCceE
Confidence            567899999999999999998766   7999999998854    4444453    3332  2232 21      146899


Q ss_pred             EEEEeC---CCcCcHHHHHHHHccCCCCeEEEEeCcCC-CCcc-------cCCCCCCCccccchHHHHHHHHHHhhcCCC
Q 026547          150 YAFVDA---DKVNYWNYHERLMKLLKVGGIAVYDNTLW-GGTV-------AMSEEQVPDHLRGGRQATLDLNRSLADDPR  218 (237)
Q Consensus       150 ~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~-~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  218 (237)
                      +|.+-.   .+......++.+++.|+|+|.+++.-++. +..+       ..|.+..+-.-..+-..+..+. .+....+
T Consensus       154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~G  232 (265)
T PF05219_consen  154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAG  232 (265)
T ss_pred             EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcC
Confidence            997642   24556789999999999999999987762 2222       1222111111233444556666 4445667


Q ss_pred             ceEEe
Q 026547          219 IQLSH  223 (237)
Q Consensus       219 ~~~~~  223 (237)
                      |+...
T Consensus       233 F~v~~  237 (265)
T PF05219_consen  233 FEVER  237 (265)
T ss_pred             CEEEE
Confidence            76553

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.46  E-value=1.9e-06  Score=72.02  Aligned_cols=164  Identities=16%  Similarity=0.168  Sum_probs=97.8

Q ss_pred             hhhhccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHH-HhhCCCCCccccHHHHHHHHHHHhh-cCCCEEEEEcccccH
Q 026547            6 KKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDV-TADHPRAMMSTAPDAGQLMAMLLKL-VNAKKTIEIGVFTGY   83 (237)
Q Consensus         6 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~   83 (237)
                      ..-+...++..-+.+..++...    ...+.+..+.+. +-.....+  -++..-+.|...+.. .++-+|+-.||.+|-
T Consensus        55 ~~r~~~~g~~s~~~y~~~L~~~----~~~~e~~~li~~ltineT~FF--Rd~~~f~~L~~~~~~~~~~irIWSAgCStGE  128 (287)
T PRK10611         55 VRRLRSLGLNDFGQYLALLESN----QNSAEWQAFINALTTNLTAFF--REAHHFPILAEHARRRSGEYRVWSAAASTGE  128 (287)
T ss_pred             HHHHHHcCCCCHHHHHHHHhcC----CCHHHHHHHHHHhhCCCCCcc--CCcHHHHHHHHHHHhcCCCEEEEEccccCCH
Confidence            3344455566666666666642    223444444433 33333333  244444445443322 234599999999998


Q ss_pred             HHHH----HHhhCC---CCCEEEEEeCCchHHHHHHHH------------------HHhc-----C-------CCCcEEE
Q 026547           84 SLLL----TALTIP---EDGQIMAIDVNRETYEIGLPV------------------IKKA-----G-------VDHKINF  126 (237)
Q Consensus        84 ~~~~----la~~~~---~~~~v~~vD~~~~~~~~a~~~------------------~~~~-----~-------~~~~v~~  126 (237)
                      -...    +....+   ...+|+|+|+++.+++.|++-                  |...     +       +...|+|
T Consensus       129 EpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F  208 (287)
T PRK10611        129 EPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDF  208 (287)
T ss_pred             HHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEE
Confidence            4332    333222   146899999999999998743                  2211     1       2246788


Q ss_pred             EeccchHHHHHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          127 IESEALSVLDQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+.|..+...      +..+.||+||+-.     ........++.+.+.|+|||++++..
T Consensus       209 ~~~NL~~~~~------~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        209 QQLNLLAKQW------AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EcccCCCCCC------ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            8888765211      1137899999743     22334678899999999999998853

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.44  E-value=1.6e-06  Score=72.10  Aligned_cols=116  Identities=17%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-----cEEEEeccch
Q 026547           60 QLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-----KINFIESEAL  132 (237)
Q Consensus        60 ~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~  132 (237)
                      .+-+.|++  ..+.+.++++|||-|+-.+-+-++.  -+.++|+|+..-.++.|+++.+......     .+.|+.+|..
T Consensus       105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~  182 (389)
T KOG1975|consen  105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF  182 (389)
T ss_pred             HHHHHHHHHHhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence            33344554  3466789999999999877766542  4689999999999999998887543222     3788999875


Q ss_pred             H-HHHHHhhcCCCCCceeEEEEe---C----CCcCcHHHHHHHHccCCCCeEEEE
Q 026547          133 S-VLDQLLKDSENEGSFDYAFVD---A----DKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       133 ~-~~~~~~~~~~~~~~~D~i~id---~----~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      . .+..+..  +.+.+||+|-+-   +    ......-.+.++.+.|+|||+++-
T Consensus       183 ~~~l~d~~e--~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  183 KERLMDLLE--FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             hhHHHHhcc--CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence            4 2222221  112349999543   1    123345678888899999999985

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.41  E-value=2.2e-06  Score=68.25  Aligned_cols=99  Identities=18%  Similarity=0.154  Sum_probs=70.8

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEE
Q 026547           74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFV  153 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~i  153 (237)
                      |.||||-=|+..+++.+.-. ..+++++|+++..++.|+++++..|+.++++++.+|.++.++.-       +..|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~-------e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG-------EDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG-------G---EEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC-------CCCCEEEE
Confidence            68999999999999998644 56899999999999999999999999999999999998877531       34788887


Q ss_pred             eCC-CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          154 DAD-KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       154 d~~-~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .+. .....+.++.....++....+|+.
T Consensus        73 AGMGG~lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   73 AGMGGELIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred             ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence            653 233456666665556555556654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.40  E-value=5.1e-06  Score=69.79  Aligned_cols=95  Identities=12%  Similarity=0.110  Sum_probs=74.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      .+++..| ...++..++|.-+|.|..+..+++.++ +++|+++|.++.+++.+++.++..  .+++++++++..++...+
T Consensus        10 ~Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l   85 (305)
T TIGR00006        10 DEVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL   85 (305)
T ss_pred             HHHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH
Confidence            3444433 345667999999999999999999887 599999999999999999988765  368999999988876555


Q ss_pred             hhcCCCCCceeEEEEeCCCcC
Q 026547          139 LKDSENEGSFDYAFVDADKVN  159 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~~  159 (237)
                      .+.  +..++|.|++|.+.+.
T Consensus        86 ~~~--~~~~vDgIl~DLGvSS  104 (305)
T TIGR00006        86 DEL--LVTKIDGILVDLGVSS  104 (305)
T ss_pred             Hhc--CCCcccEEEEeccCCH
Confidence            322  2367999999866543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.39  E-value=4.2e-06  Score=68.85  Aligned_cols=150  Identities=17%  Similarity=0.228  Sum_probs=114.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CCC-CcEEEEeccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GVD-HKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~-~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      .+..++++||-||-|.|......+++ +.-..+.-+|++...++..++++...  |.. ++|.++.||...+++...   
T Consensus       117 ~s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~---  192 (337)
T KOG1562|consen  117 CSHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK---  192 (337)
T ss_pred             ccCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc---
Confidence            34668999999999999998888887 44578999999999999999998764  443 689999999999998763   


Q ss_pred             CCCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe-CcCCCCcccCCCCCCCccccchHHHHHHHHHHhh
Q 026547          143 ENEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD-NTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLA  214 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~  214 (237)
                        .++||+|++|.....       ...+++.+.+.||+||+++.. +..|--             ......+++|-+.+.
T Consensus       193 --~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~-------------~~~i~e~r~~~~~~f  257 (337)
T KOG1562|consen  193 --ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLH-------------LDYIKEGRSFCYVIF  257 (337)
T ss_pred             --cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHH-------------HHHHHHHHHhHHHhc
Confidence              489999999865332       346888899999999998873 333311             123455778888887


Q ss_pred             cCCCceEEeeecC----CceEEEE
Q 026547          215 DDPRIQLSHVPLG----DGITICW  234 (237)
Q Consensus       215 ~~~~~~~~~lp~~----~Gl~i~~  234 (237)
                      ..-.+.++..|..    -|+.++.
T Consensus       258 ~~t~ya~ttvPTypsg~igf~l~s  281 (337)
T KOG1562|consen  258 DLTAYAITTVPTYPSGRIGFMLCS  281 (337)
T ss_pred             CccceeeecCCCCccceEEEEEec
Confidence            7777788888743    4555554

>PRK10742 putative methyltransferase; Provisional

Probab=98.39  E-value=3.3e-06  Score=68.53  Aligned_cols=88  Identities=10%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             HHHHHHHhhcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc------C--CCCcEEEEec
Q 026547           60 QLMAMLLKLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA------G--VDHKINFIES  129 (237)
Q Consensus        60 ~~l~~l~~~~~~~--~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~v~~~~~  129 (237)
                      +.|...+...++.  +|||+-+|.|..++.++..   +++|+++|.++......+..++..      +  +..+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            4555556666666  8999999999999999874   678999999999999999988875      2  2257999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCC
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      |+.+++...      ..+||+||+|..
T Consensus       153 da~~~L~~~------~~~fDVVYlDPM  173 (250)
T PRK10742        153 SSLTALTDI------TPRPQVVYLDPM  173 (250)
T ss_pred             cHHHHHhhC------CCCCcEEEECCC
Confidence            999998864      358999999964

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.38  E-value=1.2e-06  Score=71.54  Aligned_cols=126  Identities=18%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             ccHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhh---CC-CCCEEEEEeCCc--------------------
Q 026547           54 TAPDAGQLMAMLLKL----VNAKKTIEIGVFTGYSLLLTALT---IP-EDGQIMAIDVNR--------------------  105 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~---~~-~~~~v~~vD~~~--------------------  105 (237)
                      +.......|..++..    .-+..|+|+||..|.+++.++..   +. .+-++++.|--.                    
T Consensus        54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~  133 (248)
T PF05711_consen   54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE  133 (248)
T ss_dssp             SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence            344444445554442    34679999999999988765432   22 244788988311                    


Q ss_pred             ------hHHHHHHHHHHhcCC-CCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-cCcHHHHHHHHccCCCCeEE
Q 026547          106 ------ETYEIGLPVIKKAGV-DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-VNYWNYHERLMKLLKVGGIA  177 (237)
Q Consensus       106 ------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~l  177 (237)
                            ...+..++++++.|+ .+++++++|...+.++..     +.+++-++.+|++. +.....++.+++.|.|||+|
T Consensus       134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiI  208 (248)
T PF05711_consen  134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGII  208 (248)
T ss_dssp             CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEE
Confidence                  124555666666664 468999999999988754     24678888888753 33567888999999999999


Q ss_pred             EEeCcCC
Q 026547          178 VYDNTLW  184 (237)
Q Consensus       178 v~~~~~~  184 (237)
                      ++||..+
T Consensus       209 i~DDY~~  215 (248)
T PF05711_consen  209 IFDDYGH  215 (248)
T ss_dssp             EESSTTT
T ss_pred             EEeCCCC
Confidence            9999765

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.37  E-value=6e-06  Score=70.98  Aligned_cols=111  Identities=19%  Similarity=0.216  Sum_probs=88.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||..+..|.-|.++|..+...+.|++.|.+...+...+.++.+.|..+ ..+...|..++....    + .++
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~----~-~~~  312 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKE----F-PGS  312 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccc----c-Ccc
Confidence            3456799999999999999999999878999999999999999999999999865 455666766543221    1 248


Q ss_pred             eeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ||-|++|++.+.                         -.+.+.....++++||+||.+.+..
T Consensus       313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            999999976533                         1345666668999999999988763

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.37  E-value=2.9e-06  Score=67.54  Aligned_cols=113  Identities=17%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-------hcCC-CCcEEEEeccchHH-
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-------KAGV-DHKINFIESEALSV-  134 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~v~~~~~d~~~~-  134 (237)
                      ..+.+.+...++|||||.|...+..|...+ ..+.+|||+.+...+.|+...+       ..|. ..++++.++|..+. 
T Consensus        36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~  114 (205)
T PF08123_consen   36 DELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD  114 (205)
T ss_dssp             HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred             HHhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence            344566788999999999998887776554 5679999999988877765443       2343 25688999997653 


Q ss_pred             -HHHHhhcCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          135 -LDQLLKDSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       135 -~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       ...+      ...-|+||++...  +.....+......|++|..||.-..+
T Consensus       115 ~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~  160 (205)
T PF08123_consen  115 FVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF  160 (205)
T ss_dssp             HHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred             hHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence             2222      1457899998643  22344456666889998888764433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.37  E-value=3.2e-06  Score=79.27  Aligned_cols=99  Identities=11%  Similarity=0.141  Sum_probs=76.0

Q ss_pred             cccHHHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhC---C-----------------------------------
Q 026547           53 STAPDAGQLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTI---P-----------------------------------   93 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~---~-----------------------------------   93 (237)
                      ++.+..+..|..++.. .++..++|-+||+|...+..|...   +                                   
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~  251 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG  251 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence            4566666666677766 456799999999999988765421   1                                   


Q ss_pred             ---CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC
Q 026547           94 ---EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus        94 ---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                         ...+++|+|+++.+++.|++|+..+|+.+.+++.++|+.+.....     ..++||+|+.+.+
T Consensus       252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP  312 (702)
T PRK11783        252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP  312 (702)
T ss_pred             ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence               123799999999999999999999999888999999987753221     1257999998854

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.36  E-value=6.4e-06  Score=69.93  Aligned_cols=125  Identities=21%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCchHHHHHHHHHHhcCCCC-
Q 026547           50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQIMAIDVNRETYEIGLPVIKKAGVDH-  122 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-  122 (237)
                      +...++.....+|..++...++.+|+|-+||+|.....+.+.+      .....++|+|+++..+..++-++.-.+... 
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            3444667888999999988888899999999999988877643      126799999999999999988876655433 


Q ss_pred             cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC------------------------cHHHHHHHHccCCCCeEEE
Q 026547          123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN------------------------YWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~------------------------~~~~~~~~~~~L~~gG~lv  178 (237)
                      ...+..+|.+......     ...+||+|+.+.+-..                        ...+++.+.+.|++||.++
T Consensus       106 ~~~i~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~  180 (311)
T PF02384_consen  106 NINIIQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA  180 (311)
T ss_dssp             GCEEEES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred             cccccccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence            2468888876542210     1368999997632100                        1247788889999999653


Q ss_pred             E
Q 026547          179 Y  179 (237)
Q Consensus       179 ~  179 (237)
                      +
T Consensus       181 ~  181 (311)
T PF02384_consen  181 I  181 (311)
T ss_dssp             E
T ss_pred             E
Confidence            3

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.31  E-value=1.4e-05  Score=62.96  Aligned_cols=107  Identities=17%  Similarity=0.180  Sum_probs=83.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+||++|-|.|.....+.++-  -.+-+-||.+|+.++..+..-  .+-..+|-+..|..++.++.++     ++.|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~--p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F  170 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAP--PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF  170 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcC--CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence            688899999999999888777653  357788999999887655531  1223578888999999988874     4679


Q ss_pred             eEEEEeCCCcC---cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          149 DYAFVDADKVN---YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~~~~---~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |-|+-|.-.+.   ...+.+-+.++|||+|++-+-|.+-
T Consensus       171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            99999976444   4567788889999999998877663

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.31  E-value=6.6e-06  Score=70.55  Aligned_cols=121  Identities=16%  Similarity=0.172  Sum_probs=92.7

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------CC-----
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------DG-----   96 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-------------------------------~~-----   96 (237)
                      ++....+..|-.++.-.+...++|-=||+|...+..|...+.                               .+     
T Consensus       174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~  253 (381)
T COG0116         174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE  253 (381)
T ss_pred             CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence            355666777777777777789999999999999877654421                               11     


Q ss_pred             --EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-------c----CcHHH
Q 026547           97 --QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-------V----NYWNY  163 (237)
Q Consensus        97 --~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~----~~~~~  163 (237)
                        .++|+|+++.+++.|+.|.+++|+.+.|+|.++|+.++-+.       .+.+|+|+++.+-       .    .|..+
T Consensus       254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~f  326 (381)
T COG0116         254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREF  326 (381)
T ss_pred             cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHH
Confidence              37899999999999999999999999999999999776432       1689999988531       1    24556


Q ss_pred             HHHHHccCCCCeEEEEe
Q 026547          164 HERLMKLLKVGGIAVYD  180 (237)
Q Consensus       164 ~~~~~~~L~~gG~lv~~  180 (237)
                      .+.+.+.++..+..|+.
T Consensus       327 g~~lk~~~~~ws~~v~t  343 (381)
T COG0116         327 GRTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHHhcCCceEEEE
Confidence            66666777777777764

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.29  E-value=1.2e-06  Score=65.01  Aligned_cols=111  Identities=22%  Similarity=0.309  Sum_probs=70.2

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeC------CCc------CcHHHH
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDA------DKV------NYWNYH  164 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~------~~~------~~~~~~  164 (237)
                      +|+++|+.+++++.+++.+++.++.++++++...-.++..-+.     .+++|+++.+.      ++.      .....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            6999999999999999999999998899999887655544331     14899998762      221      135678


Q ss_pred             HHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEee
Q 026547          165 ERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHV  224 (237)
Q Consensus       165 ~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  224 (237)
                      +.+.++|++||+|++.  .+.|.....         .-..++.+|.+.+. ...|.+...
T Consensus        76 ~~al~lL~~gG~i~iv--~Y~GH~gG~---------eE~~av~~~~~~L~-~~~~~V~~~  123 (140)
T PF06962_consen   76 EAALELLKPGGIITIV--VYPGHPGGK---------EESEAVEEFLASLD-QKEFNVLKY  123 (140)
T ss_dssp             HHHHHHEEEEEEEEEE--E--STCHHH---------HHHHHHHHHHHTS--TTTEEEEEE
T ss_pred             HHHHHhhccCCEEEEE--EeCCCCCCH---------HHHHHHHHHHHhCC-cceEEEEEE
Confidence            8888999999999884  455532110         12344556655553 235655443

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.28  E-value=9e-06  Score=64.66  Aligned_cols=107  Identities=18%  Similarity=0.139  Sum_probs=74.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      .+.++.+||=+|.++|....+++.-..+.+.|++||.++...+..-...++   .+++-.+.+|+.....-.    .--+
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~----~lv~  142 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYR----MLVE  142 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGT----TTS-
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhh----cccc
Confidence            345678999999999999999999888889999999999765544433333   246888999986532211    1147


Q ss_pred             ceeEEEEeCCCcCc-HHHHHHHHccCCCCeEEEEe
Q 026547          147 SFDYAFVDADKVNY-WNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       147 ~~D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..|+||.|...++- .-+..++...|++||.+++.
T Consensus       143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            99999999765553 44566666899999987763

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.26  E-value=6.5e-06  Score=61.73  Aligned_cols=75  Identities=19%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             HHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcC--CCCcEEEEec
Q 026547           59 GQLMAMLLKL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAG--VDHKINFIES  129 (237)
Q Consensus        59 ~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~  129 (237)
                      .+++..++..    .++..|+|+|||.|+.+..++..+   ..+.+|++||.++...+.+++..+..+  ...++++..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            3444444444    678899999999999999998822   137899999999999999999988877  4345666666


Q ss_pred             cchH
Q 026547          130 EALS  133 (237)
Q Consensus       130 d~~~  133 (237)
                      +..+
T Consensus        90 ~~~~   93 (141)
T PF13679_consen   90 DIAD   93 (141)
T ss_pred             chhh
Confidence            5544

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.24  E-value=1.7e-06  Score=67.62  Aligned_cols=100  Identities=18%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhc-CCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKD-SENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~~  146 (237)
                      ++.+|||+||++|.++.++++...+.++|+++|+.+.           ... ..+..+++|..+.  ...+... .....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence            4579999999999999999998744689999999876           111 2355566664331  1111110 00126


Q ss_pred             ceeEEEEeCCCc--------C------cHHHHHHHHccCCCCeEEEEeC
Q 026547          147 SFDYAFVDADKV--------N------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       147 ~~D~i~id~~~~--------~------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++|+|++|....        .      ....+..+.+.|++||.+|+.-
T Consensus        91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence            999999997210        1      1223444457899999888753

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.23  E-value=8e-06  Score=67.71  Aligned_cols=133  Identities=11%  Similarity=0.050  Sum_probs=87.6

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      +..+. +++...+.+...+...++..|||||+|.|..|..++...   .+|+++|+++.+.+..++.+.   ..++++++
T Consensus         9 gQnFL-~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi   81 (262)
T PF00398_consen    9 GQNFL-VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVI   81 (262)
T ss_dssp             TSSEE-EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEE
T ss_pred             CcCee-CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceee
Confidence            33443 466666667777777788999999999999999999875   599999999999998888764   34579999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCC---CCeEEEEeCcCCCCcccCC
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLK---VGGIAVYDNTLWGGTVAMS  191 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~---~gG~lv~~~~~~~g~~~~~  191 (237)
                      .+|+.++.....    .......|+.+.+......++..+...-+   ...++++..-.+....+.|
T Consensus        82 ~~D~l~~~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~p  144 (262)
T PF00398_consen   82 NGDFLKWDLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKP  144 (262)
T ss_dssp             ES-TTTSCGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTST
T ss_pred             ecchhccccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCC
Confidence            999987532110    01244566665554444566666655222   3456666544333333333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.23  E-value=4.5e-06  Score=62.42  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .+||+|||.|..+.++++..+ ..+|+++|+++.+.+.++++++..+.. ++++++....+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            389999999999999998876 669999999999999999999988774 47777765543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.21  E-value=2.3e-05  Score=64.77  Aligned_cols=105  Identities=19%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             CCCEEEEEcccccHH----HHHHHhhCCC----CCEEEEEeCCchHHHHHHH-------------------HHHhcC---
Q 026547           70 NAKKTIEIGVFTGYS----LLLTALTIPE----DGQIMAIDVNRETYEIGLP-------------------VIKKAG---  119 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~----~~~la~~~~~----~~~v~~vD~~~~~~~~a~~-------------------~~~~~~---  119 (237)
                      ++-+|+-+||++|--    ++.+.+..+.    ..+|++.|+|...++.|+.                   +|.+.+   
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            367999999999973    3344555542    5689999999999998862                   111111   


Q ss_pred             ------CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          120 ------VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       120 ------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                            +...|.|...|..+-.+ .      .+.||+|||-.     +...-...++.....|+|||++++..
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-~------~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-F------LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-c------cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence                  11346777777655432 2      47899999753     23334578888889999999999843

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.16  E-value=3.7e-05  Score=60.71  Aligned_cols=111  Identities=18%  Similarity=0.171  Sum_probs=75.5

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLD  136 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~  136 (237)
                      .++....--..++..|+|+|+..|.++..+++.+..+++|+++|+.|--           . -+.|.++++|+.+  ...
T Consensus        34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~-~~~V~~iq~d~~~~~~~~  101 (205)
T COG0293          34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------P-IPGVIFLQGDITDEDTLE  101 (205)
T ss_pred             HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------c-CCCceEEeeeccCccHHH
Confidence            3333333224467899999999999999999998877889999997632           1 1348889988754  333


Q ss_pred             HHhhcCCCCCceeEEEEeCCC--------cCc------HHHHHHHHccCCCCeEEEEeCc
Q 026547          137 QLLKDSENEGSFDYAFVDADK--------VNY------WNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+... .+..++|+|+.|...        .++      ...++.+...|++||.+++...
T Consensus       102 ~l~~~-l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293         102 KLLEA-LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             HHHHH-cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence            33222 223557999998643        111      2334555589999999999754

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.13  E-value=3.1e-06  Score=66.89  Aligned_cols=106  Identities=20%  Similarity=0.200  Sum_probs=63.8

Q ss_pred             CCCEEEEEcccccHHHHH----HHhhC----CCCCEEEEEeCCchHHHHHHH------------------HH-HhcC---
Q 026547           70 NAKKTIEIGVFTGYSLLL----TALTI----PEDGQIMAIDVNRETYEIGLP------------------VI-KKAG---  119 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~----la~~~----~~~~~v~~vD~~~~~~~~a~~------------------~~-~~~~---  119 (237)
                      ++-+|+-+||++|--+-.    +....    +...+|+|+|+|+.+++.|++                  ++ ...+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            556999999999984332    22311    113599999999999999862                  22 1111   


Q ss_pred             -----CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          120 -----VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       120 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                           +..+|+|.+.|..+..+       ..+.||+|||-..-     ..-...++.+.+.|+|||+|++...
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence                 12468999999888222       24899999986532     2235788888999999999998543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.13  E-value=7.9e-06  Score=63.03  Aligned_cols=99  Identities=9%  Similarity=0.094  Sum_probs=76.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      +.+.|+|+|+|-.+...+.+   ..+|++||.+|...+.|.+++.-.|. ++++++.+|+.+.-         ...-|.|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~---------fe~ADvv  100 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD---------FENADVV  100 (252)
T ss_pred             hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc---------cccccee
Confidence            68999999999998877765   34999999999999999999866665 56999999998862         2567888


Q ss_pred             EEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          152 FVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       152 ~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ++..     -.+.....+..+.+.|+.++.++-..+.
T Consensus       101 icEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~  137 (252)
T COG4076         101 ICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR  137 (252)
T ss_pred             HHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence            7531     1122345677777889998888766554

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.11  E-value=0.00021  Score=60.69  Aligned_cols=123  Identities=11%  Similarity=0.032  Sum_probs=81.6

Q ss_pred             HHHHHHHHH----HHhh-cCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEE
Q 026547           56 PDAGQLMAM----LLKL-VNAKKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIKKAGVD-HKINF  126 (237)
Q Consensus        56 ~~~~~~l~~----l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~  126 (237)
                      +....+|..    ++.. .++..++|+|||+|.-+..++.++.+   ..++++||+|.++++.+.+.+....+. -.+.-
T Consensus        57 r~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~  136 (319)
T TIGR03439        57 NDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAG  136 (319)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEE
Confidence            444555544    2333 34558999999999988887776632   367999999999999999988733332 13445


Q ss_pred             EeccchHHHHHHhhcCCCCCceeEEEEeC-C-----CcCcHHHHHHHHc-cCCCCeEEEE
Q 026547          127 IESEALSVLDQLLKDSENEGSFDYAFVDA-D-----KVNYWNYHERLMK-LLKVGGIAVY  179 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~-~-----~~~~~~~~~~~~~-~L~~gG~lv~  179 (237)
                      +++|..+.+..+... .......+++.-+ .     ......+++.+.+ .|+|||.+++
T Consensus       137 l~gdy~~~l~~l~~~-~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       137 LLGTYDDGLAWLKRP-ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             EEecHHHHHhhcccc-cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            889887766544211 0113456665543 2     2234578888888 9999988877

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.08  E-value=2e-05  Score=68.44  Aligned_cols=106  Identities=16%  Similarity=0.185  Sum_probs=81.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++-+|||.=+|+|.=++.++..++...+|+.-|++++..+..++|++.+++.+ ++++.+.|+...+...      ...|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~------~~~f  122 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR------QERF  122 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS------TT-E
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc------cccC
Confidence            34589999999999999888876545799999999999999999999999987 7999999998877422      4899


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|=+|..- ....|++.+.+.++.||+|.+...
T Consensus       123 D~IDlDPfG-Sp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  123 DVIDLDPFG-SPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             EEEEE--SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CEEEeCCCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence            999888643 346899999999999999998554

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.04  E-value=3.5e-05  Score=70.18  Aligned_cols=99  Identities=18%  Similarity=0.158  Sum_probs=64.3

Q ss_pred             ccHHHHHHHHHHHhhc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHhcC
Q 026547           54 TAPDAGQLMAMLLKLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQIMAIDVNRETYEIGLPVIKKAG  119 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~-------~~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~~~  119 (237)
                      +.+...++|..++...       ...+|||.|||+|...+.++..++.       ...++++|+++..+..++.++...+
T Consensus         8 TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~   87 (524)
T TIGR02987         8 TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA   87 (524)
T ss_pred             CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence            3455555555444211       3468999999999999888776531       2578999999999999999987766


Q ss_pred             CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeC
Q 026547          120 VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       120 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      . ..+.+..+|..........  ...+.||+|+.+.
T Consensus        88 ~-~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNP  120 (524)
T TIGR02987        88 L-LEINVINFNSLSYVLLNIE--SYLDLFDIVITNP  120 (524)
T ss_pred             C-CCceeeecccccccccccc--cccCcccEEEeCC
Confidence            2 2245566654432111100  1136899998763

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.03  E-value=0.00011  Score=61.02  Aligned_cols=89  Identities=13%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...+....||.--|.|+.+..++..++..++++++|.+|.+++.|++.+...+  +++++++++..+....+...  +..
T Consensus        20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~   95 (314)
T COG0275          20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIG   95 (314)
T ss_pred             ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCC
Confidence            34456799999999999999999999878899999999999999999998766  68999999987766655433  247


Q ss_pred             ceeEEEEeCCCcC
Q 026547          147 SFDYAFVDADKVN  159 (237)
Q Consensus       147 ~~D~i~id~~~~~  159 (237)
                      ++|-|++|.+.+.
T Consensus        96 ~vDGiL~DLGVSS  108 (314)
T COG0275          96 KVDGILLDLGVSS  108 (314)
T ss_pred             ceeEEEEeccCCc
Confidence            9999999866554

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.01  E-value=8.4e-05  Score=58.95  Aligned_cols=112  Identities=17%  Similarity=0.172  Sum_probs=85.4

Q ss_pred             HHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           60 QLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        60 ~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..|..++.. .++.++.||||--+|.++++.+..+ ...+++.|+++..++.|.+++.+.++.+++++..+|.+..+.. 
T Consensus         5 ~RL~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-   82 (226)
T COG2384           5 KRLTTVANLVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-   82 (226)
T ss_pred             HHHHHHHHHHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-
Confidence            345555553 3445699999999999999999876 7899999999999999999999999999999999998665432 


Q ss_pred             hhcCCCCCceeEEEEeCCC-cCcHHHHHHHHccCCCCeEEEE
Q 026547          139 LKDSENEGSFDYAFVDADK-VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                            .+.+|.|++.+.- ....+++++-...|+.-=.+|+
T Consensus        83 ------~d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlIL  118 (226)
T COG2384          83 ------EDEIDVIVIAGMGGTLIREILEEGKEKLKGVERLIL  118 (226)
T ss_pred             ------cCCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEE
Confidence                  3689999887643 3345667776666654333443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.01  E-value=4.8e-05  Score=59.47  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=78.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC------CCcEEEEeccchHHHHHHhhcCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV------DHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..-.+.|||||.|.....++..+| +.-+.|+|+--...++.++.++..+.      -.++.+...++..+++.+-..  
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k--  136 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK--  136 (249)
T ss_pred             ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh--
Confidence            445799999999999999999988 78899999999999999988887652      246889999999999887433  


Q ss_pred             CCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEE
Q 026547          144 NEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~  179 (237)
                        ++..-.|+--...+           ...++.+..=+|++||.+..
T Consensus       137 --gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  137 --GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             --cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence              44443333211111           23566666678999998765

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.00  E-value=4.8e-05  Score=64.31  Aligned_cols=95  Identities=14%  Similarity=0.143  Sum_probs=73.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      -...+|+|.|.|..+..+...+|   +|-+++.+...+..++.++. .|    |+.+-||.++-.          .+-|+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da  239 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA  239 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence            36899999999999999988776   68899999988888888775 44    777888876653          34458


Q ss_pred             EEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          151 AFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       151 i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ||+-..     -.+..+++++|++.|+|||.|++-+..
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V  277 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV  277 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            886432     233568999999999999877665443

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.96  E-value=7.1e-05  Score=59.06  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=63.8

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      .||.-   | ...++..+....+...|.|+|||.+..+..+    +..-+|++.|+-..              .+  .+.
T Consensus        54 ~WP~n---P-vd~iI~~l~~~~~~~viaD~GCGdA~la~~~----~~~~~V~SfDLva~--------------n~--~Vt  109 (219)
T PF05148_consen   54 KWPVN---P-VDVIIEWLKKRPKSLVIADFGCGDAKLAKAV----PNKHKVHSFDLVAP--------------NP--RVT  109 (219)
T ss_dssp             TSSS----H-HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------ST--TEE
T ss_pred             cCCCC---c-HHHHHHHHHhcCCCEEEEECCCchHHHHHhc----ccCceEEEeeccCC--------------CC--CEE
Confidence            56643   2 3445555555555679999999999877443    33457999998642              12  356


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeC--CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDA--DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+|.....  +     .+++.|++++..  ...++..++++..|.|++||.+.+..+.
T Consensus       110 acdia~vP--L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~  160 (219)
T PF05148_consen  110 ACDIANVP--L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK  160 (219)
T ss_dssp             ES-TTS-S---------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             EecCccCc--C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec
Confidence            67774432  1     258999997653  3568899999999999999999998775

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.92  E-value=0.00012  Score=61.17  Aligned_cols=106  Identities=8%  Similarity=0.075  Sum_probs=67.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+|.+|||+|||.|..+..+...++.-.+++++|.++.+.+.++..++.......... ..+   .....    ....+.
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~---~~~~~----~~~~~~  103 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRV---LYRDF----LPFPPD  103 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhh---hhccc----ccCCCC
Confidence            5788999999999987766666666456899999999999999998765432111111 111   11100    012445


Q ss_pred             eEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++...     ......+++.++..+.+ -+|++....
T Consensus       104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt  142 (274)
T PF09243_consen  104 DLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGT  142 (274)
T ss_pred             cEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCC
Confidence            99986532     23345678888877766 455555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=97.91  E-value=0.00017  Score=55.87  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      ++.....+..|.-..+|..|+|+|+-.|.+++++|..+   +...+|.++|++-...+-+...      .++|.|+.++.
T Consensus        54 ~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss  127 (237)
T COG3510          54 SPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSS  127 (237)
T ss_pred             CHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCC
Confidence            45555666677777899999999999999999988644   2346899999986654322211      25799999987


Q ss_pred             hHHHHHHhhcCCCCCceeEE--EEeCCC--cCcHHHHHHHHccCCCCeEEEEeCcCCCCcc
Q 026547          132 LSVLDQLLKDSENEGSFDYA--FVDADK--VNYWNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i--~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (237)
                      .+.....+.+- -...|--|  +.|.++  .+...-++...++|.-|-.+++.|....+..
T Consensus       128 ~dpai~eqi~~-~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp  187 (237)
T COG3510         128 TDPAIAEQIRR-LKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP  187 (237)
T ss_pred             CCHHHHHHHHH-HhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence            66322211110 01222234  345443  3345666777799999999999887765543

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.86  E-value=7.5e-05  Score=62.80  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      +.+..|. ..++..+||.--|.|+.+..++..++ +++|+|+|.++++++.+++.+...  .+++.+++++..++...+.
T Consensus        11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen   11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             HHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred             HHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence            3343333 55677999999999999999999998 599999999999999999877644  5789999999877655553


Q ss_pred             hcCCCCCceeEEEEeCCCcC
Q 026547          140 KDSENEGSFDYAFVDADKVN  159 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~  159 (237)
                      .. ....++|.|++|.+.+.
T Consensus        87 ~~-~~~~~~dgiL~DLGvSS  105 (310)
T PF01795_consen   87 EL-NGINKVDGILFDLGVSS  105 (310)
T ss_dssp             HT-TTTS-EEEEEEE-S--H
T ss_pred             Hc-cCCCccCEEEEccccCH
Confidence            32 12468999999976554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.86  E-value=0.0018  Score=52.35  Aligned_cols=133  Identities=20%  Similarity=0.208  Sum_probs=75.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ..+++||=+|=..-.+ +.++.... ..+|+.+|+++..++..++..++.|+.  ++.++.|..+.+|.-     -.++|
T Consensus        43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~-----~~~~f  113 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEE-----LRGKF  113 (243)
T ss_dssp             STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TT-----TSS-B
T ss_pred             ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHH-----HhcCC
Confidence            3688999999766554 33333222 469999999999999999999999985  999999999988753     25899


Q ss_pred             eEEEEeCCC--cCcHHHHHHHHccCCCCe-EEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeee
Q 026547          149 DYAFVDADK--VNYWNYHERLMKLLKVGG-IAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVP  225 (237)
Q Consensus       149 D~i~id~~~--~~~~~~~~~~~~~L~~gG-~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp  225 (237)
                      |++|.|.+.  ....-|+.+....|+..| ...+.=..      .+         .....+.++++.+.+..-+-..++|
T Consensus       114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~------~~---------~s~~~~~~~Q~~l~~~gl~i~dii~  178 (243)
T PF01861_consen  114 DVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTH------KE---------ASPDKWLEVQRFLLEMGLVITDIIP  178 (243)
T ss_dssp             SEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-T------TT-----------HHHHHHHHHHHHTS--EEEEEEE
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEec------Cc---------CcHHHHHHHHHHHHHCCcCHHHHHh
Confidence            999999753  335568888888888766 33332111      00         1124466777777754444444554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.00024  Score=55.64  Aligned_cols=116  Identities=19%  Similarity=0.167  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           56 PDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        56 ~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .-.+.+|.-|-  .+.++.+||=+|..+|....+++.-.+ ++.+++||.++......-...++   .+++-.+.+|+..
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~  135 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARK  135 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCC
Confidence            33344444333  355778999999999999999999887 89999999999876554444433   3467788888855


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEE
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYW-NYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~  179 (237)
                      ...-.    .--+..|+|+.|...++-. -+..++...|++||.+++
T Consensus       136 P~~Y~----~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         136 PEKYR----HLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             cHHhh----hhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            32211    1147899999997655543 455666789999994443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.82  E-value=4.8e-05  Score=66.87  Aligned_cols=115  Identities=16%  Similarity=0.180  Sum_probs=88.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      .+..+|-+|-|.|....++-..+| ..++++++++|++++.|+.++....- .+.++...|..+++....+.-.....||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence            456889999999999988888877 78999999999999999999854432 2567777888888887765322367899


Q ss_pred             EEEEeCCCcC------------cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          150 YAFVDADKVN------------YWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       150 ~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      ++++|.+...            ...++..+...|.|.|+++++-+....
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence            9999854322            234566677899999999998776533

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.79  E-value=0.00019  Score=60.99  Aligned_cols=87  Identities=10%  Similarity=0.132  Sum_probs=63.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.++||+||++|.+|..+++.   +.+|++||..+ +.    ..+..   .++|..+.+|...+.+.       ...+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~----~~L~~---~~~V~h~~~d~fr~~p~-------~~~v  271 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MA----QSLMD---TGQVEHLRADGFKFRPP-------RKNV  271 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cC----HhhhC---CCCEEEEeccCcccCCC-------CCCC
Confidence            46789999999999999999985   66999999544 21    12222   35799999998776542       3789


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVG  174 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~g  174 (237)
                      |.+++|... ......+.+.+.|..|
T Consensus       272 DwvVcDmve-~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        272 DWLVCDMVE-KPARVAELMAQWLVNG  296 (357)
T ss_pred             CEEEEeccc-CHHHHHHHHHHHHhcC
Confidence            999999753 3345566666777665

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.69  E-value=0.0006  Score=50.32  Aligned_cols=104  Identities=21%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH-HHHHhhcCCCC-CceeEE
Q 026547           74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV-LDQLLKDSENE-GSFDYA  151 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~-~~~D~i  151 (237)
                      ++|+|||.|..+ .++...+....++++|+++.++..++..... .....+.+..++.... ++      ... ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP------FEDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC------CCCCCceeEE
Confidence            999999999977 4444333224899999999998885544432 2111157777776542 21      112 379999


Q ss_pred             EEeCCCcC--cHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          152 FVDADKVN--YWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       152 ~id~~~~~--~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      ........  ....+..+.+.++++|.+++......
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            33322111  36788889999999999988766543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.64  E-value=6.3e-05  Score=59.96  Aligned_cols=98  Identities=12%  Similarity=0.069  Sum_probs=72.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      -..++||||+.|+...++....  -.+++-+|.+..|++.++..- ..++  .+..+.+|- ++++      +...++|+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ld------f~ens~DL  140 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLD------FKENSVDL  140 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hccc------ccccchhh
Confidence            3479999999999988876532  358999999999999887742 1121  244566664 3333      33689999


Q ss_pred             EEEe---CCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVD---ADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+..   ++..+.+..+.+|...|||+|+++..
T Consensus       141 iisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  141 IISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             hhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            9754   45677889999999999999998763

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.0004  Score=51.64  Aligned_cols=123  Identities=12%  Similarity=0.043  Sum_probs=88.0

Q ss_pred             CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547           47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      ..+|+.+.+.++-+-...++..++..+.+|+|+|.|...+..++...  -.-+|+|++|-.+.++|-..=+.|...+..|
T Consensus        49 ~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf  126 (199)
T KOG4058|consen   49 LCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRF  126 (199)
T ss_pred             ecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhh
Confidence            34454443444444444555566668999999999999888887531  3578999999999999887777788877888


Q ss_pred             EeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          127 IESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..-|...+-         ...|..+.+.+..+-++..-.++...+..+..++..
T Consensus       127 ~RkdlwK~d---------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  127 RRKDLWKVD---------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             hhhhhhhcc---------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence            877765441         367777777776666666777777677788777654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.60  E-value=0.00053  Score=64.27  Aligned_cols=104  Identities=20%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchHH--------------HHHHHHHHhc-----CC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTI-------PE----DGQIMAIDVNRETY--------------EIGLPVIKKA-----GV  120 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~-------~~----~~~v~~vD~~~~~~--------------~~a~~~~~~~-----~~  120 (237)
                      .-+|+|+|-|+|++.+...+..       ++    ..+++++|..|-..              ..+++..+.+     |+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            4689999999999877655433       21    24899999765222              2222222221     21


Q ss_pred             ------CC--cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc------CcHHHHHHHHccCCCCeEEEEe
Q 026547          121 ------DH--KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       121 ------~~--~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                            .+  +++++.||+.+.++.+      ...+|.+|+|+-.+      ...++|..+.+++++||+++.-
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence                  12  3457889999998876      35799999997432      2468999999999999999854

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.57  E-value=8.5e-05  Score=65.60  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=57.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-hcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-KAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      -+.+||+|||+|..+.+|...   +..+.++-+....  .++..|+ +.|+..-+.++   +.+-+      +++...||
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~--~~qvqfaleRGvpa~~~~~---~s~rL------Pfp~~~fD  183 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEH--EAQVQFALERGVPAMIGVL---GSQRL------PFPSNAFD  183 (506)
T ss_pred             eEEEEeccceeehhHHHHhhC---CceEEEcccccCC--chhhhhhhhcCcchhhhhh---ccccc------cCCccchh
Confidence            358999999999999999863   4444444443222  2222222 34543211111   11222      24578999


Q ss_pred             EEEEeC----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          150 YAFVDA----DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +|.+..    +..+-.-++-++-|+|+|||+++.+..-
T Consensus       184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp  221 (506)
T PF03141_consen  184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP  221 (506)
T ss_pred             hhhcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence            997642    2222223566677999999999987543

; GO: 0008168 methyltransferase activity

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.54  E-value=0.00092  Score=54.37  Aligned_cols=97  Identities=13%  Similarity=0.131  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+-.......|.|+|||-+.++.    .  ..-.|+++|+-+-                +-+++.+|..+. |-
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a~----------------~~~V~~cDm~~v-Pl  224 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVAV----------------NERVIACDMRNV-PL  224 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeecC----------------CCceeeccccCC-cC
Confidence            44556666666666789999999998765    1  2347999997431                235677887773 21


Q ss_pred             HhhcCCCCCceeEEEEeC--CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDA--DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                            .+++.|+++...  ...++..++.++.+.|++||.+-+..+.
T Consensus       225 ------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  225 ------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             ------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence                  258999987543  3567889999999999999999998775

>PHA01634 hypothetical protein

Probab=97.53  E-value=0.00033  Score=50.71  Aligned_cols=74  Identities=12%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++++|+|||.+.|.++++++..-  ..+|+++|+++...+..+++++...+-++.... +    .++.      .-++||
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~----eW~~------~Y~~~D   94 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G----EWNG------EYEDVD   94 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c----cccc------cCCCcc
Confidence            67899999999999999998753  358999999999999999988766543322211 1    1221      148999


Q ss_pred             EEEEeCC
Q 026547          150 YAFVDAD  156 (237)
Q Consensus       150 ~i~id~~  156 (237)
                      +..+|+.
T Consensus        95 i~~iDCe  101 (156)
T PHA01634         95 IFVMDCE  101 (156)
T ss_pred             eEEEEcc
Confidence            9999974

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.53  E-value=0.00027  Score=55.08  Aligned_cols=73  Identities=18%  Similarity=0.249  Sum_probs=58.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++++|||+|+|+|..++..++..  ...|++.|+.|.....++-|.+.+|.  .+.+...|....          +..
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g~----------~~~  142 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIGS----------PPA  142 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccCC----------Ccc
Confidence            4467899999999999998887753  35899999999999999999888886  367777765431          588


Q ss_pred             eeEEEEe
Q 026547          148 FDYAFVD  154 (237)
Q Consensus       148 ~D~i~id  154 (237)
                      ||+++..
T Consensus       143 ~Dl~Lag  149 (218)
T COG3897         143 FDLLLAG  149 (218)
T ss_pred             eeEEEee
Confidence            9999764

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.52  E-value=0.0036  Score=51.60  Aligned_cols=170  Identities=10%  Similarity=0.099  Sum_probs=88.8

Q ss_pred             cCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHH----HHhhcCCCEEEEEcccccH--H
Q 026547           11 SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAM----LLKLVNAKKTIEIGVFTGY--S   84 (237)
Q Consensus        11 ~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~~~~~~~~vLeiG~G~G~--~   84 (237)
                      ....+...++++|+..-.   ...+.=.++-+...+.-.....+....-.+|..    ++....-+.+||||||--.  +
T Consensus         8 D~~~P~~ARvYDy~LGGk---dnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~n   84 (267)
T PF04672_consen    8 DTDRPSPARVYDYLLGGK---DNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGN   84 (267)
T ss_dssp             -TTS--HHHHHHHHCT-S---S--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-
T ss_pred             CCCCCcHHHHHHHHhCCc---cCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCC
Confidence            456677889999998621   111222222222222111222223333444444    3333466799999998654  4


Q ss_pred             HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh---hcC--CCCCceeEEEEe-----
Q 026547           85 LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL---KDS--ENEGSFDYAFVD-----  154 (237)
Q Consensus        85 ~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~--~~~~~~D~i~id-----  154 (237)
                      +-.+|+...++++|+-+|.+|-.+..++..+..... .+..++++|..+.-.-+.   ...  ....+.-++++.     
T Consensus        85 vHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v  163 (267)
T PF04672_consen   85 VHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFV  163 (267)
T ss_dssp             HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS
T ss_pred             HhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccC
Confidence            556777666699999999999999999999876542 348899999877443331   100  002333344432     


Q ss_pred             CCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          155 ADKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       155 ~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .+.......+..+...|.||..|+++....
T Consensus       164 ~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  164 PDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             -CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            123456789999999999999999987653

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00029  Score=56.60  Aligned_cols=113  Identities=19%  Similarity=0.135  Sum_probs=76.5

Q ss_pred             ccHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-c
Q 026547           54 TAPDAGQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-S  129 (237)
Q Consensus        54 ~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~  129 (237)
                      +++...++...+-.   ..+++.+||||+.+|..|..+++.-  ..+|+++|.....+.+-   +   ..+++|..+. .
T Consensus        60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k---L---R~d~rV~~~E~t  131 (245)
T COG1189          60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK---L---RNDPRVIVLERT  131 (245)
T ss_pred             cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh---H---hcCCcEEEEecC
Confidence            45555555544433   3467899999999999999988752  35999999876544331   1   1235666554 4


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |+...-+..    + .+..|++++|..--.....+..+..++++++.++.
T Consensus       132 N~r~l~~~~----~-~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         132 NVRYLTPED----F-TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             ChhhCCHHH----c-ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            555443332    1 35889999998766667788888899999886654

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.49  E-value=0.00031  Score=60.70  Aligned_cols=106  Identities=18%  Similarity=0.221  Sum_probs=81.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++..++++|||.|....+++..  ....+++++.++.-+..+.......++.++..+..++..+..       +.+..|
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn~f  179 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDNTF  179 (364)
T ss_pred             cccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCcccc
Confidence            34557999999999999999875  367899999999888888877777777776666666654432       346889


Q ss_pred             eEEEE-eC--CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFV-DA--DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~i-d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |.+.+ +.  ..+.....++++.+.++|||+.++-...
T Consensus       180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i  217 (364)
T KOG1269|consen  180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI  217 (364)
T ss_pred             CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence            99854 32  3456678999999999999999986553

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.47  E-value=0.00011  Score=64.65  Aligned_cols=115  Identities=18%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .+....++-+|||.=|++|.-++.+|+.++.-.+|++-|.++..++..+++.+.++..+.++..+.|+.-.+-....   
T Consensus       103 ~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~---  179 (525)
T KOG1253|consen  103 LLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM---  179 (525)
T ss_pred             hhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc---
Confidence            34455667799999999999999999999855789999999999999999999988888899999999776654321   


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....||+|=+|..-. ...|++...+.++.||++++...
T Consensus       180 ~~~~FDvIDLDPyGs-~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  180 VAKFFDVIDLDPYGS-PSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             cccccceEecCCCCC-ccHHHHHHHHHhhcCCEEEEEec
Confidence            137899998885432 35789999999999999998544

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.45  E-value=0.00035  Score=58.51  Aligned_cols=81  Identities=12%  Similarity=0.306  Sum_probs=48.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEeccch-HHHHHHhhcCCCCCcee
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIESEAL-SVLDQLLKDSENEGSFD  149 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~-~~~~~~~~~~~~~~~~D  149 (237)
                      -++||||||....=--|+.... +-+++|.|+++..++.|+++++.+ ++.++|+++..... ..+..+..   ..+.||
T Consensus       104 v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~~d  179 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNERFD  179 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-EE
T ss_pred             eEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccceee
Confidence            4799999977653222222222 569999999999999999999999 89999999765322 23332221   146899


Q ss_pred             EEEEeCC
Q 026547          150 YAFVDAD  156 (237)
Q Consensus       150 ~i~id~~  156 (237)
                      +.+++.+
T Consensus       180 ftmCNPP  186 (299)
T PF05971_consen  180 FTMCNPP  186 (299)
T ss_dssp             EEEE---
T ss_pred             EEecCCc
Confidence            9998743

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.45  E-value=0.001  Score=55.08  Aligned_cols=105  Identities=21%  Similarity=0.212  Sum_probs=71.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh---cC----------------------------
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK---AG----------------------------  119 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~----------------------------  119 (237)
                      +.+||--|||.|.++..+|..   +-.+.+.|.|--|+-..+=.+..   .+                            
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            469999999999999999985   67999999998876433322211   00                            


Q ss_pred             --------CCCcEEEEeccchHHHHHHhhcCCCCCceeEE----EEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          120 --------VDHKINFIESEALSVLDQLLKDSENEGSFDYA----FVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       120 --------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i----~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                              ...++.+..||..+.-..-    ...++||+|    |+|. ..+..++++.+.++|||||+-|=-..+
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkpgG~WIN~GPL  204 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKPGGYWINFGPL  204 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhccCCEEEecCCc
Confidence                    0124556667666653221    013689988    3555 567889999999999999976544443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.43  E-value=0.0016  Score=54.74  Aligned_cols=108  Identities=15%  Similarity=0.121  Sum_probs=72.8

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +....+.+||-+|+|. |..+...|+++. ..+|+.+|+++..++.|++ +   |...-...-+.+..+.+....+...+
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g  239 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG  239 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence            3455678999999996 778888999987 7899999999999999998 4   54321111222222333333222222


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|+.|--.   .....++.....++.||.+++..
T Consensus       240 ~~~~d~~~dCs---G~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  240 KKQPDVTFDCS---GAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             ccCCCeEEEcc---CchHHHHHHHHHhccCCEEEEec
Confidence            34588887432   33456777789999999977765

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.0025  Score=54.44  Aligned_cols=103  Identities=16%  Similarity=0.198  Sum_probs=84.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.+|+|.=+|+|.=++.++...+ ..+|+.=|++|+..+.+++|++.+... ....+..|+...+...      ...||+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~  124 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV  124 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence            88999999999999999988776 449999999999999999999887333 3566669998888764      478999


Q ss_pred             EEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          151 AFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       151 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |=+|.-- ...+|++...+.++.||++.+...
T Consensus       125 IDiDPFG-SPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         125 IDIDPFG-SPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             EecCCCC-CCchHHHHHHHHhhcCCEEEEEec
Confidence            8776533 346799999999999999988543

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.37  E-value=0.00041  Score=56.03  Aligned_cols=85  Identities=19%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             HHHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---CC-----CCcEEEEeccc
Q 026547           62 MAMLLKLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---GV-----DHKINFIESEA  131 (237)
Q Consensus        62 l~~l~~~~~~--~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~-----~~~v~~~~~d~  131 (237)
                      |...+...++  .+|||+-+|-|.-++-++..   +++|+++|.+|-.....+.-++.+   ..     ..+++++++|+
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            4444444444  38999999999999888863   579999999997765555444332   11     14799999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeC
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      .+++...      ..+||+|++|.
T Consensus       142 ~~~L~~~------~~s~DVVY~DP  159 (234)
T PF04445_consen  142 LEYLRQP------DNSFDVVYFDP  159 (234)
T ss_dssp             CCHCCCH------SS--SEEEE--
T ss_pred             HHHHhhc------CCCCCEEEECC
Confidence            9988722      48999999985

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.34  E-value=0.0022  Score=54.66  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=70.3

Q ss_pred             HhhcCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFTGY--SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~--~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +...++++|+-+|+| |.  .++.+|+++.  ++|+++|.+++..+.|++.    |-   ..++...-.+..+..     
T Consensus       162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~-----  226 (339)
T COG1064         162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV-----  226 (339)
T ss_pred             cCCCCCCEEEEECCc-HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh-----
Confidence            456678899999888 55  6777888764  8999999999999888875    32   344443333454444     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       .+.+|+|+....    ...++...+.|++||.+++-...
T Consensus       227 -~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         227 -KEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             -HhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence             245999976654    45567777999999999886654

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.00071  Score=51.17  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=67.2

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...+++|||+|.|. |..++.+|...+ ...|...|-+.+.++..++....+-..  .++.+..-+  ..-....++   
T Consensus        27 ~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~--~~~aqsq~e---  100 (201)
T KOG3201|consen   27 KIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL--IWGAQSQQE---  100 (201)
T ss_pred             HHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH--HhhhHHHHh---
Confidence            34568999999874 556777887776 789999999999998888765433111  112111111  111111111   


Q ss_pred             CCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...||+|++..   -.+......+.++.+|+|.|..++-
T Consensus       101 q~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f  139 (201)
T KOG3201|consen  101 QHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF  139 (201)
T ss_pred             hCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence            36899997532   1233456788888999999986654

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.27  E-value=0.00059  Score=53.15  Aligned_cols=111  Identities=13%  Similarity=0.090  Sum_probs=69.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHH------HHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETY------EIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~------~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ++...++.+|+|+-.|.|++|.-++.++.+.+.|+++-..+...      ...+...++.... +++.+-.+.....   
T Consensus        43 FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~---  118 (238)
T COG4798          43 FAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG---  118 (238)
T ss_pred             EeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC---
Confidence            45667888999999999999999999988788999987654311      1111222222222 2333332222221   


Q ss_pred             hhcCCCCCceeEEEEeC----------CCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          139 LKDSENEGSFDYAFVDA----------DKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                           ..+..|+++...          .......++..+.+.|||||++++.+...
T Consensus       119 -----~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a  169 (238)
T COG4798         119 -----APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRA  169 (238)
T ss_pred             -----CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence                 135666665421          12224578888999999999999877653

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.26  E-value=0.0017  Score=52.86  Aligned_cols=87  Identities=15%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhh-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           57 DAGQLMAMLLKL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        57 ~~~~~l~~l~~~-~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ....++..+... ..+.+|+|||||.--.++.+....+ +..++++|++..+++.....+...+..  .++...|...-.
T Consensus        91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~  167 (251)
T PF07091_consen   91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP  167 (251)
T ss_dssp             GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH
T ss_pred             hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC
Confidence            345555555543 3488999999988888776654433 679999999999999999999998864  555555654432


Q ss_pred             HHHhhcCCCCCceeEEEEe
Q 026547          136 DQLLKDSENEGSFDYAFVD  154 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id  154 (237)
                              +....|+.++-
T Consensus       168 --------~~~~~DlaLll  178 (251)
T PF07091_consen  168 --------PKEPADLALLL  178 (251)
T ss_dssp             --------TTSEESEEEEE
T ss_pred             --------CCCCcchhhHH
Confidence                    24789999875

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.08  E-value=0.0014  Score=57.11  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=51.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .|||||+|+|..++..+++..  -.|+++|.-..|.+.|++...++|.+++|+++.-.+.+
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            689999999999998888754  46999999999999999999999999999988755433

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.05  E-value=0.0052  Score=49.56  Aligned_cols=106  Identities=18%  Similarity=0.133  Sum_probs=72.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      +.++.+||=+|.++|++..+.+.-..+.+.|++||.++..-...   +..+.-..+|-.+..|+...-.--    ---.-
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL---~nmAkkRtNiiPIiEDArhP~KYR----mlVgm  226 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDL---INMAKKRTNIIPIIEDARHPAKYR----MLVGM  226 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHH---HHHhhccCCceeeeccCCCchhee----eeeee
Confidence            55778999999999999999999888899999999988553322   222222346778888886532110    00256


Q ss_pred             eeEEEEeCCCcCcHHHH-HHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYH-ERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~  180 (237)
                      .|+||.|...+.....+ -+..-.|++||-+++.
T Consensus       227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             EEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            89999987655533332 2333689999977763

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.0015  Score=55.37  Aligned_cols=107  Identities=17%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ..|.+|||+|.|.|.....+-..+|.-..++-+|.++..-+..-...+..... +......|...-...+.    ..+.|
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~dRl~lp----~ad~y  186 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTEDRLSLP----AADLY  186 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccchhccCCC----cccee
Confidence            35778999999999876666555664456788888886655554443333321 22222333322211221    23778


Q ss_pred             eEEEEeC------CCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDA------DKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +++++..      .......+++.+|.++.|||.||+-
T Consensus       187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence            9887532      2222445899999999999999874

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.0066  Score=51.91  Aligned_cols=118  Identities=19%  Similarity=0.234  Sum_probs=78.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh-hc
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL-KD  141 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~  141 (237)
                      ....++.+|||++...|.-++.+.+++-   ..+.|++=|.++..+...+..+..... +...+...++..+-.... ..
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~  229 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG  229 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence            3466788999999999999988877663   245899999999888887777755443 334444444432211110 00


Q ss_pred             -CCCCCceeEEEEeCCCcC--------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          142 -SENEGSFDYAFVDADKVN--------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       142 -~~~~~~~D~i~id~~~~~--------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                       +.....||-|++|...+.                          -...+.+..++|++||.+|.+.+..
T Consensus       230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence             012468999999854211                          0245666678999999999998864

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.93  E-value=0.0019  Score=54.63  Aligned_cols=98  Identities=15%  Similarity=0.067  Sum_probs=75.2

Q ss_pred             CCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHH-------HHHHHHHhcCCC
Q 026547           49 RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYE-------IGLPVIKKAGVD  121 (237)
Q Consensus        49 ~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~  121 (237)
                      .+...++++..-+++.++...+++.|.|--.|+|......|.-   ++-|+|.|++-.++.       ..+.+++++|..
T Consensus       187 iGnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~  263 (421)
T KOG2671|consen  187 IGNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS  263 (421)
T ss_pred             cCCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCc
Confidence            4445667788888888999999999999999999987766653   679999999887765       567899999965


Q ss_pred             C-cEEEEeccchHHHHHHhhcCCCCCceeEEEEeC
Q 026547          122 H-KINFIESEALSVLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       122 ~-~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      + -+.++.+|.......-      ...||.|++|.
T Consensus       264 ~~fldvl~~D~sn~~~rs------n~~fDaIvcDP  292 (421)
T KOG2671|consen  264 SQFLDVLTADFSNPPLRS------NLKFDAIVCDP  292 (421)
T ss_pred             chhhheeeecccCcchhh------cceeeEEEeCC
Confidence            3 4567788865532211      47899999983

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.92  E-value=0.00064  Score=55.88  Aligned_cols=111  Identities=16%  Similarity=0.114  Sum_probs=64.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC----------------C-----------C
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV----------------D-----------H  122 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----------------~-----------~  122 (237)
                      ++.++||||||.-..-+  ..+.+.-.+|++.|..+...+..+++++..+-                .           .
T Consensus        56 ~g~~llDiGsGPtiy~~--lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQL--LSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--GGG--TTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHhh--hhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            46689999998854322  22212234899999999988888877765431                0           0


Q ss_pred             cE-EEEeccchHHHHHHhhcCCCCCceeEEEEeC-------CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          123 KI-NFIESEALSVLDQLLKDSENEGSFDYAFVDA-------DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       123 ~v-~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .| .++.+|..+.-+-.... ....+||+|+...       ....+...++++.++|||||.+++..++
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~-~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPV-VLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS--SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhceEEEeeccCCCCCCccc-cCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            13 35566664432211000 0123599997542       2344667788888999999999997776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.88  E-value=0.024  Score=51.23  Aligned_cols=134  Identities=20%  Similarity=0.286  Sum_probs=92.3

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      .-.++...++|..+....+..+|.|-.||+|......++.+..   ...++|.|+++.....++-++--.|....+...+
T Consensus       168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~  247 (489)
T COG0286         168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRH  247 (489)
T ss_pred             cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccc
Confidence            3356888889988888766679999999999987766665532   3679999999999999999988777753456666


Q ss_pred             ccchHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCe---EE
Q 026547          129 SEALSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGG---IA  177 (237)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG---~l  177 (237)
                      +|.........  ......||+|+.+.+-                            .....+++.+...|+|||   ++
T Consensus       248 ~dtl~~~~~~~--~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv  325 (489)
T COG0286         248 GDTLSNPKHDD--KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV  325 (489)
T ss_pred             cccccCCcccc--cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence            66544321110  0123679988643110                            111467888889999865   56


Q ss_pred             EEeCcCCCCc
Q 026547          178 VYDNTLWGGT  187 (237)
Q Consensus       178 v~~~~~~~g~  187 (237)
                      +.++++++|.
T Consensus       326 l~~gvlfr~~  335 (489)
T COG0286         326 LPDGVLFRGG  335 (489)
T ss_pred             ecCCcCcCCC
Confidence            6677777663

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.86  E-value=0.0073  Score=52.24  Aligned_cols=102  Identities=13%  Similarity=0.095  Sum_probs=70.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~  147 (237)
                      ++.+|+-+|||. |..+..+++.++ ..+|+.+|.+++.++.|++....    +.+..... +.........    ....
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g  238 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG  238 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence            444899999997 667777888876 68999999999999999885421    11111112 2222222221    1247


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +|++|-...   ....++.+.+.+++||.+++-.+.
T Consensus       239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence            999986554   456788899999999999987655

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.79  E-value=0.012  Score=45.67  Aligned_cols=103  Identities=15%  Similarity=0.238  Sum_probs=63.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHH--HHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVL--DQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~--~~~~~~~~~~  145 (237)
                      .+..+|||+||..|.++.-..+...+++.|.|||+-+-.           .. .-++++.+ |..+..  ..+.+. -+.
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~-~Ga~~i~~~dvtdp~~~~ki~e~-lp~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PP-EGATIIQGNDVTDPETYRKIFEA-LPN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CC-CCcccccccccCCHHHHHHHHHh-CCC
Confidence            457799999999999998877777569999999974311           11 12455555 333311  111111 124


Q ss_pred             CceeEEEEeCCCc-------CcHHHHHHH-------HccCCCCeEEEEeCcCCCC
Q 026547          146 GSFDYAFVDADKV-------NYWNYHERL-------MKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       146 ~~~D~i~id~~~~-------~~~~~~~~~-------~~~L~~gG~lv~~~~~~~g  186 (237)
                      .+.|+|+.|..+.       +....++.|       ...++|+|.+++.  +|.|
T Consensus       135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g  187 (232)
T KOG4589|consen  135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG  187 (232)
T ss_pred             CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence            7899999874321       112223333       3678899999997  5666

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=0.0057  Score=54.54  Aligned_cols=118  Identities=14%  Similarity=0.070  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhhcC------CCEEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547           56 PDAGQLMAMLLKLVN------AKKTIEIGVFTGYSLLLTA---LTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~------~~~vLeiG~G~G~~~~~la---~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      .+..+++..|....+      ...|+-+|.|.|-......   +...+..++++||.+|.++-..+. ......+++|++
T Consensus       347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vti  425 (649)
T KOG0822|consen  347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTI  425 (649)
T ss_pred             HHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEE
Confidence            344445555544321      3367889999998755443   333346789999999988765443 333455678999


Q ss_pred             EeccchHHHHHHhhcCCCCCceeEEEE-----eCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          127 IESEALSVLDQLLKDSENEGSFDYAFV-----DADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~~D~i~i-----d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +.+|..++-+.       ..+.|+++.     .++-+.-+++++.+.+.|+|+|+.|-..
T Consensus       426 i~~DMR~w~ap-------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s  478 (649)
T KOG0822|consen  426 ISSDMRKWNAP-------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSS  478 (649)
T ss_pred             EeccccccCCc-------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence            99999887531       278898852     2445556899999999999999877654

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=96.70  E-value=0.024  Score=42.31  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=54.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.-|||+|-|.|..=-+|-..+| +-+|+.+|..-..      +-..  ..+.-+++.||+.++++.+..-   ..+.-+
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~------hp~~--~P~~~~~ilGdi~~tl~~~~~~---g~~a~l   96 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALAC------HPSS--TPPEEDLILGDIRETLPALARF---GAGAAL   96 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-------GGG-----GGGEEES-HHHHHHHHHHH----S-EEE
T ss_pred             CCceEEeccCCCccHHHHHHhCC-CCeEEEEeeeccc------CCCC--CCchHheeeccHHHHhHHHHhc---CCceEE
Confidence            35799999999999889999988 8899999963211      1000  1123468999999999884322   355666


Q ss_pred             EEEeCCCcCcH---H---HHH-HHHccCCCCeEEEEeCcC
Q 026547          151 AFVDADKVNYW---N---YHE-RLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       151 i~id~~~~~~~---~---~~~-~~~~~L~~gG~lv~~~~~  183 (237)
                      +..|....+..   .   .+. .+.++|.+||++|-...+
T Consensus        97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl  136 (160)
T PF12692_consen   97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPL  136 (160)
T ss_dssp             EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS--
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            66665433321   1   111 223799999999987655

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.58  E-value=0.0066  Score=44.24  Aligned_cols=91  Identities=20%  Similarity=0.268  Sum_probs=61.9

Q ss_pred             cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC
Q 026547           80 FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN  159 (237)
Q Consensus        80 G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~  159 (237)
                      |.|..++.+|++..  .+|+++|.++...+.+++    .|...-+.....|..+.+..+.    ....+|+||-...   
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~g---   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCVG---   67 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHT----TTSSEEEEEESSS---
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hccccccccccccccccccccc----ccccceEEEEecC---
Confidence            45888999999875  899999999988877665    3522111111223344444442    1257999975543   


Q ss_pred             cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          160 YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       160 ~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ....++...+.|+++|.+++-...
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESST
T ss_pred             cHHHHHHHHHHhccCCEEEEEEcc
Confidence            357888999999999999987654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.51  E-value=0.0018  Score=53.72  Aligned_cols=104  Identities=15%  Similarity=0.078  Sum_probs=70.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ..+..|+|+-.|.||.|+.+.-... ...|+++|.+|..++..+++++.++..++..++.||....-+        ....
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~A  263 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRA  263 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccc
Confidence            3457899999999999994433333 568999999999999999999988877777777777655422        3566


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCC-Ce-EEEEeCc
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKV-GG-IAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~-gG-~lv~~~~  182 (237)
                      |-|.+..-.+.-..+...+ +.|+| || ++-+|..
T Consensus       264 drVnLGLlPSse~~W~~A~-k~Lk~eggsilHIHen  298 (351)
T KOG1227|consen  264 DRVNLGLLPSSEQGWPTAI-KALKPEGGSILHIHEN  298 (351)
T ss_pred             hheeeccccccccchHHHH-HHhhhcCCcEEEEecc
Confidence            7776654333323333334 56666 44 5555433

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.50  E-value=0.12  Score=41.18  Aligned_cols=108  Identities=13%  Similarity=0.100  Sum_probs=63.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhc------------------------------
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKA------------------------------  118 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~------------------------------  118 (237)
                      .|-.+.|-.||+|+...-+....+. -.+|++-|+++++++.|++|+.-.                              
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4558999999999976665544432 258999999999999998665211                              


Q ss_pred             -----------CCCCcEEEEeccchHHHH--HHhhcCCCCCceeEEEEeCC-------Cc-----CcHHHHHHHHccCCC
Q 026547          119 -----------GVDHKINFIESEALSVLD--QLLKDSENEGSFDYAFVDAD-------KV-----NYWNYHERLMKLLKV  173 (237)
Q Consensus       119 -----------~~~~~v~~~~~d~~~~~~--~~~~~~~~~~~~D~i~id~~-------~~-----~~~~~~~~~~~~L~~  173 (237)
                                 |-.....+.+.|..+.-.  ... .   ....|+|+-|.+       ..     -...+++.+.+.|..
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~---~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~  206 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-A---GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE  206 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-T---T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-c---CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence                       112225567777766332  221 1   244699998842       11     135789999999988


Q ss_pred             CeEEEEeC
Q 026547          174 GGIAVYDN  181 (237)
Q Consensus       174 gG~lv~~~  181 (237)
                      ++++++.|
T Consensus       207 ~sVV~v~~  214 (246)
T PF11599_consen  207 RSVVAVSD  214 (246)
T ss_dssp             T-EEEEEE
T ss_pred             CcEEEEec
Confidence            88888843

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.13  Score=41.97  Aligned_cols=120  Identities=13%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             cHHHHHHHHH----HHhhcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHH-HhcCCCCcEEE
Q 026547           55 APDAGQLMAM----LLKLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVI-KKAGVDHKINF  126 (237)
Q Consensus        55 ~~~~~~~l~~----l~~~~~~~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~  126 (237)
                      .+..+.++..    ++....+...+|+|+|+-.-+..+..++..   -.+.+.||++...++...+.+ .++. .-.+.-
T Consensus        59 TRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~  137 (321)
T COG4301          59 TRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNA  137 (321)
T ss_pred             chhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEee
Confidence            4556666654    455678899999999999988888877753   258999999999986554444 3433 223667


Q ss_pred             EeccchHHHHHHhhcCCCCCceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEE
Q 026547          127 IESEALSVLDQLLKDSENEGSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       127 ~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +++|....+..+..    .+.==++|+...     ...-..|+.++...++||-.+++
T Consensus       138 l~~~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         138 LCGDYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             hhhhHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            78887777666521    122223343322     22235789999999999988776

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.31  E-value=0.00065  Score=53.47  Aligned_cols=94  Identities=14%  Similarity=0.142  Sum_probs=64.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      .+.++||+|.|.|-.+..++..+.   +|++.|+|..|....++.    +    .+++  ...++...       +-+||
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~----ynVl--~~~ew~~t-------~~k~d  171 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----N----YNVL--TEIEWLQT-------DVKLD  171 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----C----Ccee--eehhhhhc-------Cceee
Confidence            357999999999999999987654   699999998887655442    2    1222  12233221       35799


Q ss_pred             EEEEeC---CCcCcHHHHHHHHccCCC-CeEEEEeCcC
Q 026547          150 YAFVDA---DKVNYWNYHERLMKLLKV-GGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~  183 (237)
                      +|.+-.   .+-+.-..++.++..|+| .|.+|+.-++
T Consensus       172 li~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  172 LILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             hHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            986431   233456788888888998 7877776554

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.20  E-value=0.06  Score=47.05  Aligned_cols=108  Identities=18%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc-chHHHHHHhhcC
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE-ALSVLDQLLKDS  142 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~  142 (237)
                      +....++.+||.+|+|. |..+..+++..+ ..+|++++.+++..+.+++..   +. ..+.....+ ..+.+..+.   
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~---  250 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT---  250 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc---
Confidence            34455678999999988 888888988865 347999999998888777642   21 112222221 222232221   


Q ss_pred             CCCCceeEEEEeCCC------------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          143 ENEGSFDYAFVDADK------------------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       143 ~~~~~~D~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       ....+|+|+-....                  .+....++.+.+.++++|.++.-.
T Consensus       251 -~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         251 -GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             -CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence             12469988643211                  112456788889999999888754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.00  E-value=0.015  Score=42.48  Aligned_cols=52  Identities=25%  Similarity=0.309  Sum_probs=39.1

Q ss_pred             cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc--C----cHHHHHHHHccCCCCeEEEEe
Q 026547          123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV--N----YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .+++..||+.+.++.+      ...+|+||.|+-.+  +    ..++|+.+.+++++||+++.-
T Consensus        32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty   89 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY   89 (124)
T ss_dssp             EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred             EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence            3567899999999987      48999999996322  2    468999999999999999864

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.89  E-value=0.026  Score=40.31  Aligned_cols=89  Identities=18%  Similarity=0.065  Sum_probs=57.3

Q ss_pred             ccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCceeEEEEeC
Q 026547           79 VFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus        79 ~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~D~i~id~  155 (237)
                      ||.|..+..+++.+.+.. +|+.+|.+++..+.+++.    +    +.++.||+.+.  +...     ...+.+.+++..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA-----GIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc-----CccccCEEEEcc
Confidence            455778888877775555 899999999987776653    2    67899998763  4433     247889888876


Q ss_pred             CCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          156 DKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       156 ~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ......-..-...+.+.|...+++.
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence            5433222333334666676666653

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.87  E-value=0.057  Score=46.31  Aligned_cols=99  Identities=17%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|...-+.....+..+    ....   .+.
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~----~~~~---~g~  235 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDH----YKAE---KGY  235 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHH----Hhcc---CCC
Confidence            3567899888752 335556777653 3379999999988877665    3532111111112211    1111   245


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|+||-....   ...++...+.|++||.++.-..
T Consensus       236 ~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        236 FDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence            8988643322   3456777899999999987654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.74  E-value=0.1  Score=47.28  Aligned_cols=108  Identities=18%  Similarity=0.157  Sum_probs=67.4

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE--Eecc----------chHHH
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF--IESE----------ALSVL  135 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~--~~~d----------~~~~~  135 (237)
                      .++.+|+-+|+|. |..++..|+.++  ++|+++|.+++..+.+++.    |.. .+.+  ...+          ..+..
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhHH
Confidence            4678999999986 667777888765  5899999999988877762    421 0111  0100          01111


Q ss_pred             ----HHHhhcCCCCCceeEEEEeCCCcC--cHHH-HHHHHccCCCCeEEEEeCcCCCC
Q 026547          136 ----DQLLKDSENEGSFDYAFVDADKVN--YWNY-HERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       136 ----~~~~~~~~~~~~~D~i~id~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                          ..+.+.   ...+|+|+-......  .+.. .+.+.+.++|||+|+.-.+...|
T Consensus       236 ~~~~~~~~~~---~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG  290 (509)
T PRK09424        236 KAEMALFAEQ---AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG  290 (509)
T ss_pred             HHHHHHHHhc---cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence                111110   246999986654322  2344 48899999999998876554334

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.67  E-value=0.38  Score=39.81  Aligned_cols=111  Identities=9%  Similarity=0.059  Sum_probs=66.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--CCcEEEEeccchHHH-HHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--DHKINFIESEALSVL-DQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~~~~~  146 (237)
                      ....|+.+|||  .-|..+-...+.+.+++=+|. |+.++.-++.+.+.+.  .++.+++..|..+.+ ..+...++...
T Consensus        81 g~~qvV~LGaG--lDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~  157 (260)
T TIGR00027        81 GIRQVVILGAG--LDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT  157 (260)
T ss_pred             CCcEEEEeCCc--cccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence            35689999995  545444332232456666664 5677777777776553  356888888876433 33432222122


Q ss_pred             ceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..-+++.-+     .......+++.+.+...||+.|+++-+.
T Consensus       158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            233443332     2334567788887777799999998543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.58  E-value=0.02  Score=50.99  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=59.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ...-++|+|...|.|..+..|...   .  |..+-.-|..-...-..+-+.|+   +-+.+ |..+.++.      .+.+
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~---~--VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsT------YPRT  427 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDD---P--VWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFST------YPRT  427 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccC---C--ceEEEecccCCCCcchhhhhccc---chhcc-chhhccCC------CCcc
Confidence            344579999999999999888642   2  33333322222222223333354   22222 33333333      3689


Q ss_pred             eeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ||+|..++-      .-.....+-++-|.|+|||.+++.|-
T Consensus       428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence            999976632      22345667777799999999999764

; GO: 0008168 methyltransferase activity

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.46  E-value=0.16  Score=42.94  Aligned_cols=100  Identities=21%  Similarity=0.254  Sum_probs=61.7

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....+.+||..|+| .|..++.+|+..  +.+|++++.+++..+.+++    .|....+.....+..+.+ ...    ..
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~  230 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LG  230 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cC
Confidence            34566788888876 367777788765  4679999999887766644    354211111111222222 111    13


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+|+++-...   ....++.+.+.|+++|.++.-
T Consensus       231 ~~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         231 GGFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CCceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            67998763322   245678888999999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=95.39  E-value=0.047  Score=43.55  Aligned_cols=80  Identities=18%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH-HHHHhhcCCCCCceeE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV-LDQLLKDSENEGSFDY  150 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~~~~D~  150 (237)
                      -++|||||-+..+.+.-..    --.|+.||+++..                -.+.+.|..+. ++..     ..++||+
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~~-----~~e~Fdv  107 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPKN-----ESEKFDV  107 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCCC-----cccceeE
Confidence            5899999987776554322    3469999998732                12345554443 2211     2478999


Q ss_pred             EEEeCC------CcCcHHHHHHHHccCCCCeE
Q 026547          151 AFVDAD------KVNYWNYHERLMKLLKVGGI  176 (237)
Q Consensus       151 i~id~~------~~~~~~~~~~~~~~L~~gG~  176 (237)
                      |.+...      ....-+.+..+.++|+++|.
T Consensus       108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            976522      22334788888899999999

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.38  E-value=0.063  Score=46.26  Aligned_cols=54  Identities=13%  Similarity=0.165  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLP  113 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  113 (237)
                      ..+++..++...+.+.|+|+|.|.|+.+..++-.+  +-.|++||-++...+.|++
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence            34566667777888999999999999999998765  5799999999776665553

>PRK11524 putative methyltransferase; Provisional

Probab=95.36  E-value=0.065  Score=44.96  Aligned_cols=57  Identities=11%  Similarity=0.115  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh
Q 026547           58 AGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK  117 (237)
Q Consensus        58 ~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~  117 (237)
                      -.+++..++..  .+++.|||--+|+|..++...+.   +-+.+|+|++++.++.|+++++.
T Consensus       194 P~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        194 PEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             hHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            35666666654  46789999999999887766553   45899999999999999999854

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.32  E-value=0.25  Score=41.69  Aligned_cols=102  Identities=14%  Similarity=0.133  Sum_probs=70.7

Q ss_pred             CCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           71 AKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        71 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +.+|.-||-|. |..+..+|-.+  ++.|+-+|+|.+.+++....+     ..+++.+..+...+-...       .+.|
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~aD  233 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKAD  233 (371)
T ss_pred             CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhcc
Confidence            34677777764 77788888765  579999999999888777665     246888888877766554       6788


Q ss_pred             EEEEe---CCCcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          150 YAFVD---ADKVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       150 ~i~id---~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      +++-.   .......-..+++.+.++||++|+=-.+.-.|
T Consensus       234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGG  273 (371)
T COG0686         234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGG  273 (371)
T ss_pred             EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCC
Confidence            88632   22333344567777899999988644333333

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.22  E-value=0.12  Score=42.33  Aligned_cols=102  Identities=18%  Similarity=0.140  Sum_probs=58.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH-----hcCCCCcEEEEe---ccchHHHHHHhhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK-----KAGVDHKINFIE---SEALSVLDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~v~~~~---~d~~~~~~~~~~~  141 (237)
                      +..+|||+|+|+|..++.+|...  ...|...|... .......+..     ..++...+.+..   +++.+....    
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~----  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR----  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence            46689999999999888877753  46788777643 3332222221     112222333322   333222111    


Q ss_pred             CCCCCc-eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGS-FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~-~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         .+. +|+|+....   .+.+......+..+|..+|++.+.-
T Consensus       159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~  199 (248)
T KOG2793|consen  159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY  199 (248)
T ss_pred             ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence               234 899975432   3445666777778888888665543

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.17  E-value=0.23  Score=42.81  Aligned_cols=104  Identities=16%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++.+||-.|+|. |..++.+|+... ..+|++++.+++..+.+++    .|.+.-+.....+..+.+..+.    ..
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~  243 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GG  243 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CC
Confidence            345678999998743 334556777653 2369999999888777654    3532112222223333333321    12


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..+|+|+ |...  ....++...+.+++||.+++-..
T Consensus       244 ~g~d~vi-d~~g--~~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       244 FGADVVI-DAVG--RPETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCCEEE-ECCC--CHHHHHHHHHHhccCCEEEEECC
Confidence            4689886 4322  13456777789999999987544

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.15  E-value=0.19  Score=43.11  Aligned_cols=94  Identities=13%  Similarity=0.095  Sum_probs=57.1

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++.+||-+|+|. |..+..+++......+|+++|.+++.++.+++    .+.   ....  +  +. ..       ...
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~g  222 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DLA  222 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------ccC
Confidence            4578999999743 22334555542214689999999888777754    231   1111  1  11 11       135


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|+||-..........++...++|++||.+++-.
T Consensus       223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            8988643332224567788889999999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.07  E-value=0.024  Score=46.92  Aligned_cols=103  Identities=23%  Similarity=0.197  Sum_probs=70.0

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      -+.+.+++...   ..+..++|+|||.|-.+.   .. | ..-+++.|++...+..+++.    |   -.++..+|++..
T Consensus        33 Wp~v~qfl~~~---~~gsv~~d~gCGngky~~---~~-p-~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~   97 (293)
T KOG1331|consen   33 WPMVRQFLDSQ---PTGSVGLDVGCGNGKYLG---VN-P-LCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKL   97 (293)
T ss_pred             cHHHHHHHhcc---CCcceeeecccCCcccCc---CC-C-cceeeecchhhhhccccccC----C---CceeehhhhhcC
Confidence            35566655544   346789999999996432   11 2 56899999998888766652    2   226777887765


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcC------cHHHHHHHHccCCCCeEEEE
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVN------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..       ...+||.++.-+..++      -...++.+.+.|+|||-.++
T Consensus        98 p~-------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen   98 PF-------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             CC-------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            32       3588998875443333      35678899999999997655

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.05  E-value=0.39  Score=41.37  Aligned_cols=103  Identities=12%  Similarity=0.049  Sum_probs=64.1

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~  142 (237)
                      ....++.+||-.|+  +.|..++.+|+..  +.+|++++.+++..+.+++.   .|...-+..... +..+.+..+    
T Consensus       154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~----  224 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRY----  224 (348)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHH----
Confidence            34556789999987  3666777888875  56899999888776655432   354321222111 233333332    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ....+|+++ |...   ...++.+.+.|++||.+++-..
T Consensus       225 -~~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G~  259 (348)
T PLN03154        225 -FPEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCGM  259 (348)
T ss_pred             -CCCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEECc
Confidence             124689887 4322   2467788899999999986543

>PTZ00357 methyltransferase; Provisional

Probab=95.05  E-value=0.13  Score=47.83  Aligned_cols=104  Identities=14%  Similarity=0.058  Sum_probs=67.8

Q ss_pred             EEEEEcccccHHHHHHHh---hCCCCCEEEEEeCCchHHHHHHHHHHh-cCC-------CCcEEEEeccchHHHHHHhhc
Q 026547           73 KTIEIGVFTGYSLLLTAL---TIPEDGQIMAIDVNRETYEIGLPVIKK-AGV-------DHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~---~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~-------~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      .|+-+|+|.|-+.....+   ......+|++||.++..+...+.+... ..+       .++|+++..|...+.......
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            589999999987554433   333356899999998766555544322 122       346999999998874321000


Q ss_pred             ----CCCCCceeEEEE-----eCCCcCcHHHHHHHHccCCC----CeE
Q 026547          142 ----SENEGSFDYAFV-----DADKVNYWNYHERLMKLLKV----GGI  176 (237)
Q Consensus       142 ----~~~~~~~D~i~i-----d~~~~~~~~~~~~~~~~L~~----gG~  176 (237)
                          +...+++|+|+.     .++-+.-++.++.+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                001247999973     24455568999999888876    675

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.03  E-value=0.078  Score=42.25  Aligned_cols=53  Identities=15%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             HHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547           58 AGQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLP  113 (237)
Q Consensus        58 ~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  113 (237)
                      -.+++..++.  ..++..|||.-||+|..+....+.   +-+.+|+|++++..+.|++
T Consensus       177 P~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence            3444545444  356789999999999987766553   4489999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=94.87  E-value=0.041  Score=44.60  Aligned_cols=51  Identities=16%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc------------------CcHHHHHHHHccCCCCeEEEE
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKV------------------NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------------------~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+++++|+.+.+..+.     ++++|+|+.|.+-.                  ....+++++.++|+|||.+++
T Consensus         2 ~~l~~gD~le~l~~lp-----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP-----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC-----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3688999999998873     58999999884321                  123567888899999998875

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.80  E-value=0.27  Score=42.60  Aligned_cols=103  Identities=23%  Similarity=0.323  Sum_probs=60.1

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++.+||-.|+|. |..+..+|+... ..+|+++|.+++..+.+++    .|...-+.....+..+.+..+.     .
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~  257 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----G  257 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence            345667888888743 334555666543 2369999999988777654    3532111211122222222221     2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +.+|+||-...   ....++...+.|+++|.++.-..
T Consensus       258 ~g~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         258 GGVDYAFEMAG---SVPALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEcc
Confidence            36898864322   23567777889999999886543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK13699 putative methylase; Provisional

Probab=94.76  E-value=0.14  Score=41.54  Aligned_cols=57  Identities=7%  Similarity=0.034  Sum_probs=43.7

Q ss_pred             HHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc
Q 026547           59 GQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA  118 (237)
Q Consensus        59 ~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  118 (237)
                      .+++..++.  ..++..|||--||+|..+....+.   +-+.+|+|++++..+.+.+++++.
T Consensus       150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            344444443  346789999999999987766553   458999999999999999988664

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=94.73  E-value=0.079  Score=44.57  Aligned_cols=118  Identities=18%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhhcCC-------CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH---Hhc---------
Q 026547           58 AGQLMAMLLKLVNA-------KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI---KKA---------  118 (237)
Q Consensus        58 ~~~~l~~l~~~~~~-------~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~---~~~---------  118 (237)
                      ...++..|-...++       -+||--|||.|.++..++....   .+-|=|.+--|+-...=.+   +.-         
T Consensus       131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfI  207 (369)
T KOG2798|consen  131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFI  207 (369)
T ss_pred             hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeee
Confidence            34455555554443       4899999999999999987533   4445565544432111011   000         


Q ss_pred             ---------------------------CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE----EeCCCcCcHHHHHHH
Q 026547          119 ---------------------------GVDHKINFIESEALSVLDQLLKDSENEGSFDYAF----VDADKVNYWNYHERL  167 (237)
Q Consensus       119 ---------------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~----id~~~~~~~~~~~~~  167 (237)
                                                 +.........||..+.....    .+.+.||+|+    +|. .++..++++.+
T Consensus       208 h~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s----~~~~~~d~VvTcfFIDT-a~NileYi~tI  282 (369)
T KOG2798|consen  208 HQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTS----SGAGSYDVVVTCFFIDT-AHNILEYIDTI  282 (369)
T ss_pred             eccccccccccccccccCccccccccCCCCCCccccccceeEEecCc----CCCCccceEEEEEEeec-hHHHHHHHHHH
Confidence                                       00011222335555443321    1235799884    454 45778999999


Q ss_pred             HccCCCCeEEEEeCcC
Q 026547          168 MKLLKVGGIAVYDNTL  183 (237)
Q Consensus       168 ~~~L~~gG~lv~~~~~  183 (237)
                      .+.|+|||+-|=-..+
T Consensus       283 ~~iLk~GGvWiNlGPL  298 (369)
T KOG2798|consen  283 YKILKPGGVWINLGPL  298 (369)
T ss_pred             HHhccCCcEEEeccce
Confidence            9999999987754443

>PRK11524 putative methyltransferase; Provisional

Probab=94.67  E-value=0.071  Score=44.72  Aligned_cols=53  Identities=21%  Similarity=0.308  Sum_probs=40.1

Q ss_pred             cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc------C-------------cHHHHHHHHccCCCCeEEEEe
Q 026547          123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV------N-------------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------~-------------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+++++|+.+.+..+.     .++||+|++|.+-.      .             ...++..+.++|++||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~-----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP-----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc-----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            35789999999887663     47899999985411      0             135778888999999998874

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.44  E-value=0.06  Score=46.40  Aligned_cols=97  Identities=22%  Similarity=0.223  Sum_probs=74.5

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+.....-+.++++...++..|+|+.|..|..|.+++..+...++++++|.++...+..++.+...|.+. ++...+|..
T Consensus       196 ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~  274 (413)
T KOG2360|consen  196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFL  274 (413)
T ss_pred             EEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-ccccccccc
Confidence            3444445556677777788999999999999999999988768999999999999999999999999754 666688876


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      .+ +..    +.-...-.|++|.
T Consensus       275 ~t-~~~----~~~~~v~~iL~Dp  292 (413)
T KOG2360|consen  275 NT-ATP----EKFRDVTYILVDP  292 (413)
T ss_pred             CC-CCc----ccccceeEEEeCC
Confidence            64 211    1125566777774

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.38  E-value=0.54  Score=38.11  Aligned_cols=99  Identities=20%  Similarity=0.247  Sum_probs=60.9

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++.+||..|+|. |..+..+++..  +.+|++++.+++..+.+++    .+....+.....+....+. ..    ....
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~~----~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-LT----GGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-Hh----cCCC
Confidence            5678999999985 66677777764  4789999998877666543    2322111111112212111 11    1367


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|+++.....   ...++.+.+.|+++|.++.-.
T Consensus       202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             CCEEEECCCC---HHHHHHHHHhcccCCEEEEEc
Confidence            9999854332   145677778899999988643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.38  E-value=0.56  Score=40.17  Aligned_cols=105  Identities=22%  Similarity=0.233  Sum_probs=60.0

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++.+||-.|+|. |..+..+|+... ...|++++.+++..+.+++    .|...-+.....+ .+.+..+..    .
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~~----~  226 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVLR----E  226 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHhc----C
Confidence            344677999998743 334455676653 2347899988887766543    3532111111112 122222211    2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..+|.+++|+.-.  ...+....+.|++||.+++-...
T Consensus       227 ~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        227 LRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             CCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEccC
Confidence            4678555665432  45677788999999999876543

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.35  E-value=0.46  Score=40.60  Aligned_cols=104  Identities=23%  Similarity=0.326  Sum_probs=67.7

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  143 (237)
                      ++..++.+|.-+|||. |..++.-|+... ..+|+++|++++.++.|++.    |-..-++.... |..+.+..+.    
T Consensus       181 a~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T----  251 (366)
T COG1062         181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT----  251 (366)
T ss_pred             ccCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc----
Confidence            4566778999999975 666666676655 78999999999999888774    54322222222 4445555442    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ....|..|--.   ...+.++.....++++|..++-.+
T Consensus       252 -~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         252 -DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             -CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEec
Confidence             34677775332   223466667777777888777544

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.25  E-value=0.74  Score=39.18  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=58.0

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++.+||-+|+|. |..+..+++..  +.+ |++++.+++..+.+++    .|...-+.....+ .+.+..+.    .
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~  228 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----S  228 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----C
Confidence            345678999988642 33445566665  345 9999998887766644    3532212221122 22222221    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|+||-...   ....++...+.|+++|.+++-.
T Consensus       229 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         229 GAGADVAIECSG---NTAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence            247998874332   2345566778999999988643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.16  E-value=0.09  Score=43.91  Aligned_cols=95  Identities=13%  Similarity=0.018  Sum_probs=62.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      +++|+.||.|..+..+..+-  -..+.++|+++..++..+.++..       .++++|+.+....-.     ...+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~-----~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF-----IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc-----CCCCCEEE
Confidence            68999999999988877642  23688999999999888887631       156677766543210     25799998


Q ss_pred             EeCCCc------------C-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          153 VDADKV------------N-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       153 id~~~~------------~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+.+.+            +     +.++++.+ +.++|. ++++.|+.
T Consensus        68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i-~~~~P~-~~v~ENV~  113 (275)
T cd00315          68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIRIL-KEKKPK-YFLLENVK  113 (275)
T ss_pred             eCCCChhhhHHhhcCCCCCchHHHHHHHHHHH-HhcCCC-EEEEEcCc
Confidence            753221            1     12333333 556774 77888874

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.16  E-value=0.072  Score=43.83  Aligned_cols=47  Identities=11%  Similarity=0.013  Sum_probs=37.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCchHHHHHHHHHHh
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE-------DGQIMAIDVNRETYEIGLPVIKK  117 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~-------~~~v~~vD~~~~~~~~a~~~~~~  117 (237)
                      +-+|+|+|.|+|..+..+++.+..       ..+++.||.||.+.+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            469999999999999988877653       35899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.00  E-value=0.15  Score=41.02  Aligned_cols=98  Identities=15%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC----C----CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHh
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPE----D----GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLL  139 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~----~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~  139 (237)
                      .-++++|+....|.++..+++.+-+    .    .+|++||+.+=           +++. -|.-+++|+..  .++...
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~-GV~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIE-GVIQLQGDITSASTAEAII  108 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccC-ceEEeecccCCHhHHHHHH
Confidence            3568999999999999998876632    1    13999998652           1232 25556777533  222222


Q ss_pred             hcCCCCCceeEEEEeCCC-----cCcHHH---------HHHHHccCCCCeEEEEe
Q 026547          140 KDSENEGSFDYAFVDADK-----VNYWNY---------HERLMKLLKVGGIAVYD  180 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~-----~~~~~~---------~~~~~~~L~~gG~lv~~  180 (237)
                      +. ++.++-|+|++|+..     +...+|         +.-....|+|||.+|..
T Consensus       109 ~h-fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  109 EH-FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HH-hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            22 345799999999743     223333         23333789999998864

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=93.97  E-value=0.16  Score=38.26  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             EEccccc--HHHHHHH-hhCCCCCEEEEEeCCchHHHHHHHH--HHhc
Q 026547           76 EIGVFTG--YSLLLTA-LTIPEDGQIMAIDVNRETYEIGLPV--IKKA  118 (237)
Q Consensus        76 eiG~G~G--~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~--~~~~  118 (237)
                      |||+..|  ..+.+++ +...+..+|+++|++|...+..+++  +.-.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            7999999  6666654 2344478999999999999988888  5443

; PDB: 2PY6_A.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=93.94  E-value=0.47  Score=43.10  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=57.6

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec------------cchHHH-
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES------------EALSVL-  135 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~------------d~~~~~-  135 (237)
                      ++.+|+-+|+|. |..+..+++.+  +++|+.+|.++..++.++.    .|.. .+++-..            -..++. 
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~~  235 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFIA  235 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHHH
Confidence            567999999976 35566667765  4679999999987776665    2321 1111100            001111 


Q ss_pred             ---HHHhhcCCCCCceeEEEEeC---CCcCcHHHHHHHHccCCCCeEEEE
Q 026547          136 ---DQLLKDSENEGSFDYAFVDA---DKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       136 ---~~~~~~~~~~~~~D~i~id~---~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                         ..+.+.   ...+|+||...   ......-..+++.+.+|||++|+=
T Consensus       236 ~~~~~~~e~---~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       236 AEMELFAAQ---AKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHH---hCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence               111111   36799997544   222222246667789999988763

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.94  E-value=0.71  Score=40.28  Aligned_cols=104  Identities=16%  Similarity=0.071  Sum_probs=57.2

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+|+-+|+| .|..++..++.+  +.+|+.+|.+++..+.+...+   +.  .+.....+. +.+...      ...+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~------l~~a  231 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA------VKRA  231 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH------HccC
Confidence            56789999987 455566666654  458999999887665544433   21  122222222 222222      2578


Q ss_pred             eEEEEeCCC--cCcHH-HHHHHHccCCCCeEEEEeCcCCCCc
Q 026547          149 DYAFVDADK--VNYWN-YHERLMKLLKVGGIAVYDNTLWGGT  187 (237)
Q Consensus       149 D~i~id~~~--~~~~~-~~~~~~~~L~~gG~lv~~~~~~~g~  187 (237)
                      |+|+.....  ...+. +-+...+.+++|++++--.+...|.
T Consensus       232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence            999865311  11122 2255557788987766433333343

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.90  E-value=0.9  Score=38.69  Aligned_cols=94  Identities=14%  Similarity=0.144  Sum_probs=58.4

Q ss_pred             CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           72 KKTIEIGV--FTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~--G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+||-.|.  |.|..++.+|++.  +. +|++++.+++..+.+++.   .|.+.-+.....+..+.+..+     ....+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~-----~~~gv  225 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL-----CPEGV  225 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH-----CCCCc
Confidence            78999885  5666777788875  45 799999888766655553   354321222222333333333     12569


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |+|+ |....   ..++.+++.|+++|.++.
T Consensus       226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         226 DVYF-DNVGG---EISDTVISQMNENSHIIL  252 (345)
T ss_pred             eEEE-ECCCc---HHHHHHHHHhccCCEEEE
Confidence            9887 43222   235778899999999886

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.87  E-value=0.73  Score=39.45  Aligned_cols=103  Identities=19%  Similarity=0.247  Sum_probs=64.5

Q ss_pred             HhhcCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .....+++||-.|...  |..++.||+++.  .+++.+--+++..+    .+++.|-+.-+++...|..+.+..+.    
T Consensus       138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~~~~~v~~~t----  207 (326)
T COG0604         138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREEDFVEQVRELT----  207 (326)
T ss_pred             cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCcccHHHHHHHHc----
Confidence            4456688999999554  446778888764  36666666665444    34445644345555666555555442    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+|+-...    .+.+......|+++|.++.-..
T Consensus       208 ~g~gvDvv~D~vG----~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         208 GGKGVDVVLDTVG----GDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             CCCCceEEEECCC----HHHHHHHHHHhccCCEEEEEec
Confidence            1247999974322    3556667788999998887444

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=93.68  E-value=1  Score=38.53  Aligned_cols=106  Identities=16%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +...++++||-.|+| .|..+..+|+... ...+++++.+++..+.+++    .|...-+.....+..+.+..+.    .
T Consensus       162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~  232 (351)
T cd08285         162 ANIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----G  232 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----C
Confidence            345567888888865 3445666777654 3369999998877666554    4542212221222222222221    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ...+|+++-....   ...+..+++.|+++|.++.-...
T Consensus       233 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~~  268 (351)
T cd08285         233 GKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNYY  268 (351)
T ss_pred             CCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEeccc
Confidence            2569988743322   35677888999999988864443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN02740 Alcohol dehydrogenase-like

Probab=93.67  E-value=0.96  Score=39.43  Aligned_cols=104  Identities=19%  Similarity=0.256  Sum_probs=59.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  142 (237)
                      +...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|....+....  .+..+.+..+.   
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  265 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT---  265 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence            4456678999998742 334455666643 2379999999888777754    35422122111  11222233221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                        .+.+|+|+-...   ....++.....+++| |.+++-..
T Consensus       266 --~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G~  301 (381)
T PLN02740        266 --GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLGI  301 (381)
T ss_pred             --CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEcc
Confidence              136998864332   235567777888886 88776443

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.50  E-value=0.35  Score=36.67  Aligned_cols=95  Identities=17%  Similarity=0.088  Sum_probs=58.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC------CCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG------VDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      +|.-||+|.+..++....... +-+|+....+++.++..++.-....      +..++.+ ..|..+.+          +
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~   68 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E   68 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence            467788888776554322222 4589999999877776665422111      1123332 33443332          5


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .-|+|++-.+.....++++++.+.++++-.++.
T Consensus        69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            668999988888889999999999988776665

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=93.48  E-value=0.8  Score=39.30  Aligned_cols=107  Identities=21%  Similarity=0.187  Sum_probs=60.8

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++.+||-+|+|. |..+..+|+..  +.+|++++.+++..+.+++    .|...-+.....+..+......+- ...
T Consensus       163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~  235 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKA  235 (349)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-ccc
Confidence            345678999999854 55666777765  4589999999988776654    353211221111111222211100 001


Q ss_pred             Ccee----EEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFD----YAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D----~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..+|    .| +|...  ....++.+.+.|++||.+++-...
T Consensus       236 ~g~d~~~d~v-~d~~g--~~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       236 RGLRSTGWKI-FECSG--SKPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             CCCCCCcCEE-EECCC--ChHHHHHHHHHHhcCCeEEEECcC
Confidence            2454    44 44432  234666777899999999876543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.47  E-value=1.5  Score=37.36  Aligned_cols=101  Identities=13%  Similarity=0.079  Sum_probs=62.7

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~  142 (237)
                      ....++.+||-.|+  +.|..+..+|+..  +.+|+++..+++..+.+++.   .|...-+..... +..+.+....   
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---  218 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF---  218 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC---
Confidence            44567789999986  4566777788865  56899998888776666543   354321221111 2223333221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                        ...+|+|+ |...   ...++.+++.|+++|.++.-
T Consensus       219 --~~gvd~v~-d~~g---~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         219 --PNGIDIYF-DNVG---GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             --CCCcEEEE-ECCC---HHHHHHHHHHhccCcEEEEe
Confidence              25799887 4322   24577888999999998863

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02827 Alcohol dehydrogenase-like

Probab=93.43  E-value=0.82  Score=39.86  Aligned_cols=104  Identities=22%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  142 (237)
                      ....++.+||-.|+|. |..++.+++... ...|++++.+++..+.+++    .|...-+....  .+..+.+..+.   
T Consensus       189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---  260 (378)
T PLN02827        189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT---  260 (378)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh---
Confidence            3455678999998643 334455666653 3368999988877766643    45421121111  12222222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                        .+.+|+|+-...   ....+....+.+++| |.+++-..
T Consensus       261 --~~g~d~vid~~G---~~~~~~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        261 --GGGADYSFECVG---DTGIATTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             --CCCCCEEEECCC---ChHHHHHHHHhhccCCCEEEEECC
Confidence              236898864332   234566777889998 99986443

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.39  E-value=1.7  Score=36.82  Aligned_cols=102  Identities=12%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             HHhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhc
Q 026547           65 LLKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKD  141 (237)
Q Consensus        65 l~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~  141 (237)
                      .+...++.+||-.|.  +.|..++.+++..  +.+|++++.+++..+.+++    .|.+.-+..... +..+.+...   
T Consensus       133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~---  203 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA---  203 (325)
T ss_pred             HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence            445567789999884  4666777788864  5689999988877665543    454221221111 222222222   


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                        ..+.+|+|+ |....   ..++..++.|+++|.++.-.
T Consensus       204 --~~~gvdvv~-d~~G~---~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       204 --SPDGYDCYF-DNVGG---EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             --CCCCeEEEE-ECCCH---HHHHHHHHHhCcCcEEEEec
Confidence              124699887 43222   34577889999999998643

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.31  E-value=0.28  Score=41.55  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=57.8

Q ss_pred             CEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE-eccchHHHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFT--GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI-ESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+|+-+|+|.  |+.+.+|++.   +..|+.++..++.++..++   +.|+    .+. .+.. ...+.....+...++|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~-~~~~~~~~~~~~~~~~   71 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQA-SLYAIPAETADAAEPI   71 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcc-eeeccCCCCccccccc
Confidence            4688899875  3345555543   4579999987655554443   1122    111 0100 0000000000013689


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEE-EEeCcC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIA-VYDNTL  183 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~l-v~~~~~  183 (237)
                      |+|++.....+..+.++.+.+.+.+++.+ .+.|-+
T Consensus        72 D~viv~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv  107 (305)
T PRK05708         72 HRLLLACKAYDAEPAVASLAHRLAPGAELLLLQNGL  107 (305)
T ss_pred             CEEEEECCHHhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence            99999877667778888899999998865 456554

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.31  E-value=0.83  Score=38.85  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ....++.+||..|+| .|..++.+|+... ..++++++.+++..+.+++    .|....+.....+..+.+..+.    .
T Consensus       163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~  233 (347)
T cd05278         163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----G  233 (347)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----C
Confidence            345566788887764 3556677777654 2478888877766655543    3422112222222223333221    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+|+++-....   ...++..++.|+++|.++.-
T Consensus       234 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         234 GRGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence            2579988732221   24677788999999988854

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=93.24  E-value=1.6  Score=36.77  Aligned_cols=101  Identities=12%  Similarity=0.071  Sum_probs=62.5

Q ss_pred             HHhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           65 LLKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        65 l~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      .....++.+||-.|.  +.|..++.+|+..  +.+|++++.+++..+.+++    .|...-+.....+..+.+..+    
T Consensus       138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~----  207 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA----  207 (329)
T ss_pred             hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH----
Confidence            344566788988884  5566777788875  5689999988877666654    354221222122222323222    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       ....+|+|+ |...   ...++..++.|+++|.++.-
T Consensus       208 -~~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         208 -APDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             -CCCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEEE
Confidence             125699886 4322   24567888999999998764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.20  E-value=0.26  Score=39.84  Aligned_cols=83  Identities=8%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEe-ccchHHHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIE-SEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~~~  148 (237)
                      -++||||+|.-.  +|=.-... -+-+.+|.|+++..++.|+..+..+ ++...++++. -|....++..-.   ..+.|
T Consensus        80 i~~LDIGvGAnC--IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~y  154 (292)
T COG3129          80 IRILDIGVGANC--IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNERY  154 (292)
T ss_pred             eEEEeeccCccc--ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---cccee
Confidence            378999986543  43222111 1458999999999999999999877 6666677654 344334443311   14789


Q ss_pred             eEEEEeCCCcC
Q 026547          149 DYAFVDADKVN  159 (237)
Q Consensus       149 D~i~id~~~~~  159 (237)
                      |+..++.+-..
T Consensus       155 d~tlCNPPFh~  165 (292)
T COG3129         155 DATLCNPPFHD  165 (292)
T ss_pred             eeEecCCCcch
Confidence            99998865433

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.00  E-value=2.2  Score=35.32  Aligned_cols=101  Identities=18%  Similarity=0.198  Sum_probs=58.5

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++++||-+|+|. |..+..+|+... ..+|+.+|.+++..+.+++    .|...-+..  .+..+.+..+.    ....
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~~~~~~~~----~~~g  187 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAEP--EVLAERQGGLQ----NGRG  187 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhHHHHHHHh----CCCC
Confidence            3667899998742 334556677653 2358999988887766655    343211111  11112222221    1246


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +|+++-....   ...++.+.+.|+++|.++.-...
T Consensus       188 ~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       188 VDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence            8988643222   34667778999999999875543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.89  E-value=0.9  Score=33.13  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=50.8

Q ss_pred             HHHHhhcCCCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           63 AMLLKLVNAKKTIEIGVFTGYS-LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ..+++..+.++|+|+|.|.=.. +..|.++   +..|+++|+++.   .+.     .    .++++..|..+.-..+   
T Consensus         6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~---~a~-----~----g~~~v~DDif~P~l~i---   67 (127)
T PF03686_consen    6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR---KAP-----E----GVNFVVDDIFNPNLEI---   67 (127)
T ss_dssp             HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred             HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc---ccc-----c----CcceeeecccCCCHHH---
Confidence            3455566777999999987764 4445553   479999999987   111     2    3678888887644333   


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                         -...|+|+.--........+-.+.+.  -|.-+++-
T Consensus        68 ---Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii~  101 (127)
T PF03686_consen   68 ---YEGADLIYSIRPPPELQPPILELAKK--VGADLIIR  101 (127)
T ss_dssp             ---HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEEE
T ss_pred             ---hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEEE
Confidence               26889999777666666666666553  24444443

; PDB: 2K4M_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=92.83  E-value=2.6  Score=32.97  Aligned_cols=101  Identities=20%  Similarity=0.275  Sum_probs=52.8

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHH------------HHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLP------------VIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      +|--+|.  |+.++.+|..+. .+-+|+++|++++.++..++            .+++.....+..+- .|..+.+    
T Consensus         2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            4556666  555444443332 25699999999988776552            11111101222222 2222221    


Q ss_pred             hcCCCCCceeEEEEeCCC----------cCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          140 KDSENEGSFDYAFVDADK----------VNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                            ...|++|+..+.          +...+..+.+.+.++++.++++......|
T Consensus        75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppG  125 (185)
T PF03721_consen   75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPG  125 (185)
T ss_dssp             ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTT
T ss_pred             ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEe
Confidence                  346788765321          22456677788899999999998887666

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.72  E-value=1.8  Score=36.56  Aligned_cols=119  Identities=12%  Similarity=0.173  Sum_probs=72.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccch-H-H
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEAL-S-V  134 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~-~-~  134 (237)
                      .+++...+... .+.|+.+||  |.-|...--.-+++.+|+=+|. |+.++.=++.+++.+..  ..++++..|.. + +
T Consensus        82 D~~~~~~~~~g-~~qvViLga--GLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw  157 (297)
T COG3315          82 DDFVRAALDAG-IRQVVILGA--GLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDW  157 (297)
T ss_pred             HHHHHHHHHhc-ccEEEEecc--ccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccch
Confidence            33333333333 689999999  5555544332233467777774 77888878888877643  36888999987 3 5


Q ss_pred             HHHHhhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          135 LDQLLKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+.+.++.....-+++.-+     .......+|+.+..++.||-.++++-
T Consensus       158 ~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~  209 (297)
T COG3315         158 PQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY  209 (297)
T ss_pred             HHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence            555654333233333444332     33445678888877777766666654

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=92.58  E-value=0.097  Score=45.77  Aligned_cols=65  Identities=22%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-EEEEeccchHHHH
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-INFIESEALSVLD  136 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~  136 (237)
                      ..+..|-|+.||.|-.++..+.   ++++|++-|++++++++.+.++.-..+.+. ++.+..|+.+++.
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~k---K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAK---KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             CCcchhhhhhcCcCccccchhh---cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            4566889999999999988887   478999999999999999999988777765 9999999988874

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.48  E-value=1.9  Score=36.69  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=66.8

Q ss_pred             HHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE--eccchHHHHHHhh
Q 026547           64 MLLKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI--ESEALSVLDQLLK  140 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~  140 (237)
                      ..+...++.++.-.|+|.=. ..+.-+++.. .+++++||++++..+.|++.    |..+-++..  ...+.+.+.+.  
T Consensus       186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f----GaTe~iNp~d~~~~i~evi~Em--  258 (375)
T KOG0022|consen  186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF----GATEFINPKDLKKPIQEVIIEM--  258 (375)
T ss_pred             hhcccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc----CcceecChhhccccHHHHHHHH--
Confidence            45677788999999997633 4444455544 67999999999999888774    554333332  22355555554  


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                         .++.+|+-|--..   ..+.++++....++| |.-++-.+
T Consensus       259 ---TdgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv  295 (375)
T KOG0022|consen  259 ---TDGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGV  295 (375)
T ss_pred             ---hcCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEe
Confidence               2578888873322   234555555555676 66555444

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=92.44  E-value=2.2  Score=37.01  Aligned_cols=104  Identities=20%  Similarity=0.287  Sum_probs=59.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  142 (237)
                      +....+.+||-.|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|...-+....  .+..+.+..+.   
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  252 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT---  252 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh---
Confidence            3455678999998753 445566777653 2379999999988777654    35422122111  11112222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                        .+.+|+++-...   ....+....+.++++ |.+++-..
T Consensus       253 --~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       253 --DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             --CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEec
Confidence              236898863322   134567777889886 88776443

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.44  E-value=0.84  Score=37.96  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             CCCEEEEEcccccHHHHH-HHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFTGYSLLL-TALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~-la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.|+-+|--. ..++. ++..+|  .+|..+|+++..+....+..++.|+. +++.+.-|..+.+|+-.     ..+|
T Consensus       152 ~gK~I~vvGDDD-Ltsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kF  222 (354)
T COG1568         152 EGKEIFVVGDDD-LTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKF  222 (354)
T ss_pred             CCCeEEEEcCch-hhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhC
Confidence            567899999433 33343 334444  48999999999999999999999984 48888889888777643     4799


Q ss_pred             eEEEEeCCCc--CcHHHHHHHHccCCCC
Q 026547          149 DYAFVDADKV--NYWNYHERLMKLLKVG  174 (237)
Q Consensus       149 D~i~id~~~~--~~~~~~~~~~~~L~~g  174 (237)
                      |.++-|.+..  ....|+.+-...|+.-
T Consensus       223 DvfiTDPpeTi~alk~FlgRGI~tLkg~  250 (354)
T COG1568         223 DVFITDPPETIKALKLFLGRGIATLKGE  250 (354)
T ss_pred             CeeecCchhhHHHHHHHHhccHHHhcCC
Confidence            9998775421  1233444444566655

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.43  E-value=0.85  Score=38.58  Aligned_cols=88  Identities=18%  Similarity=0.108  Sum_probs=49.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPED---GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+|.-||+|.  .+..++..+...   .+|+++|.+++..+.+++    .|...  . ...+..+.          ....
T Consensus         7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~a   67 (307)
T PRK07502          7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGA   67 (307)
T ss_pred             cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCC
Confidence            5788898764  333333332212   389999999887665543    34211  1 11121111          1456


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      |+|++........++++.+.+.+++|++++
T Consensus        68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            888777665555566666666777776543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.41  E-value=0.86  Score=39.91  Aligned_cols=84  Identities=21%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCc
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE--DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGS  147 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~  147 (237)
                      ++||-|||  |..+...+..+..  ..+|+..|.+++..+.+.....     .+++.++.|+.+.  +..+      ...
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l------i~~   68 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL------IKD   68 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH------Hhc
Confidence            57999999  4444433333211  3699999999887776655431     2688888887664  3333      256


Q ss_pred             eeEEEEeCCCcCcHHHHHHHH
Q 026547          148 FDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~  168 (237)
                      +|+|+.-.........++.|.
T Consensus        69 ~d~VIn~~p~~~~~~i~ka~i   89 (389)
T COG1748          69 FDLVINAAPPFVDLTILKACI   89 (389)
T ss_pred             CCEEEEeCCchhhHHHHHHHH
Confidence            699986554444334444443

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.33  E-value=0.93  Score=38.96  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=57.7

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeC---CchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDV---NRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~---~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .++.+||-+|+|. |..+..+|+..  +.+|++++.   +++..+.++    +.|.. .+.....+..+ .. .      
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~~-~------  235 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-VK-L------  235 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-hh-h------
Confidence            3567999998754 44566677765  458999987   455555443    34532 12111111111 11 1      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ...+|+||-....   ...+....+.|++||.+++-...
T Consensus       236 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         236 VGEFDLIIEATGV---PPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             cCCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEecC
Confidence            2579988754332   34677788999999998875443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=92.23  E-value=0.61  Score=31.85  Aligned_cols=85  Identities=11%  Similarity=0.036  Sum_probs=52.1

Q ss_pred             EEEEcccccHHHHHHHhhCCC-C---CEEEEE-eCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           74 TIEIGVFTGYSLLLTALTIPE-D---GQIMAI-DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~~-~---~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      |.=||+  |..+..+++.+-. +   .+|+.+ +.+++..+...+.+   +    +.+...+..+.+          +.-
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~----------~~a   62 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAA----------QEA   62 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHH----------HHT
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhh----------ccC
Confidence            445665  5555555444321 2   588844 99998876655543   3    445554555554          346


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      |+||+........+.++.+ ..+.++.+++
T Consensus        63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence            8999999888888888888 6666655554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=92.19  E-value=0.86  Score=37.32  Aligned_cols=114  Identities=14%  Similarity=0.169  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      +....++..+...+.... +..-.|+=.++..+++   +.-+.+.+|+.|+-.+..+++++.   ..++++++.|..+.+
T Consensus        44 ~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l  116 (245)
T PF04378_consen   44 PALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL  116 (245)
T ss_dssp             GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred             HHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence            344555655555554333 5555555556655655   467999999999999888888754   347999999999977


Q ss_pred             HHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCC--CCeEEEE
Q 026547          136 DQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLK--VGGIAVY  179 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~--~gG~lv~  179 (237)
                      ..+.   ++..+=-+|+||..   +..+....+.+.+.++  +.|++++
T Consensus       117 ~all---PP~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i  162 (245)
T PF04378_consen  117 KALL---PPPERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI  162 (245)
T ss_dssp             HHH----S-TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred             hhhC---CCCCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence            7664   22466779999974   4445555555554444  4676664

; PDB: 2OO3_A.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=92.17  E-value=1.9  Score=34.16  Aligned_cols=80  Identities=16%  Similarity=0.192  Sum_probs=45.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      +..+|+-+|||. |......+...+ -++++.+|.+.                   ...+.+.+.+++.+..-+++.+..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            567899999974 333333222223 46899999772                   334555666666554334554444


Q ss_pred             cchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          130 EALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       130 d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      .... .+..+      ...+|+|+...+
T Consensus        99 ~i~~~~~~~~------~~~~D~Vi~~~d  120 (202)
T TIGR02356        99 RVTAENLELL------INNVDLVLDCTD  120 (202)
T ss_pred             cCCHHHHHHH------HhCCCEEEECCC
Confidence            4322 22222      368999875543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=92.14  E-value=0.64  Score=40.07  Aligned_cols=49  Identities=20%  Similarity=0.070  Sum_probs=39.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCchHHHHHHHHHHhcC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-------EDGQIMAIDVNRETYEIGLPVIKKAG  119 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-------~~~~v~~vD~~~~~~~~a~~~~~~~~  119 (237)
                      +-.++|||.|.|..+..+++.+.       ...++..||+|++..+.-++.++...
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            35899999999999888776552       25689999999999888887776553

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.14  E-value=1  Score=39.74  Aligned_cols=103  Identities=19%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhc----CCCCcEEEEe----ccchHHHH
Q 026547           68 LVNAKKTIEIGV--FTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKA----GVDHKINFIE----SEALSVLD  136 (237)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~~~  136 (237)
                      ..++.+||-+|.  +.|..++.+|+.... ..+|+++|.+++.++.+++.+...    |.  ...++.    .+..+.+.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHH
Confidence            345678888873  356677777876531 237999999999998888753211    21  112222    12222233


Q ss_pred             HHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          137 QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+.    ....+|+|+.....   ...+....+.++++|.+++
T Consensus       251 ~~t----~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         251 ELT----GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             HHh----CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence            221    12469988764322   3566777889998775543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.09  E-value=0.76  Score=38.78  Aligned_cols=88  Identities=11%  Similarity=0.054  Sum_probs=53.8

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++++||-+|+|. |..++.+|+..+ ...|+++|.+++.++.+.+.    .      ++  |..+.   .      ...+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g~  201 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRDY  201 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCCC
Confidence            566889888753 556666777654 33577888887766554431    1      11  11110   0      2568


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+||-....   ...++.+.+.|+++|.+++-..
T Consensus       202 Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       202 RAIYDASGD---PSLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CEEEECCCC---HHHHHHHHHhhhcCcEEEEEee
Confidence            988643322   3456778899999999987543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.86  E-value=2.5  Score=36.06  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=58.4

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +...++.+||-.|+| .|..+..+|+..  +.+|++++.+++..+.+++    .|.+.   ++.  ..+.         .
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~---------~  220 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGG--AYDT---------P  220 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecc--cccc---------C
Confidence            344567899999964 233455666664  4689999999887766555    45421   111  1111         0


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+.+|+++.....   ...+....+.|++||.+++-..
T Consensus       221 ~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       221 PEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             cccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            2457876643322   3467778899999999987554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.86  E-value=2.1  Score=36.95  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHhcCCCCcEEE
Q 026547           70 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQIMAIDVNR---------------------ETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      ...+||-+|||. |.... .|++. + -++++.+|.+.                     ..++.+++.+++.+..-+++.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~a-G-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRA-G-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            457899999974 33222 33332 2 35899999864                     244566677777665445666


Q ss_pred             Eeccch-HHHHHHhhcCCCCCceeEEEEeCC
Q 026547          127 IESEAL-SVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       127 ~~~d~~-~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      +..+.. +.+..+      ...+|+|+...+
T Consensus       101 ~~~~~~~~~~~~~------~~~~DlVid~~D  125 (338)
T PRK12475        101 VVTDVTVEELEEL------VKEVDLIIDATD  125 (338)
T ss_pred             EeccCCHHHHHHH------hcCCCEEEEcCC
Confidence            666543 233333      367999876543

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=91.85  E-value=2.2  Score=36.22  Aligned_cols=102  Identities=18%  Similarity=0.266  Sum_probs=61.8

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .....++.+||-.|+|. |..++.+|+..  +.+|+++..+++..+.+++    .+...-+.....+..+.+..+.    
T Consensus       154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----  223 (337)
T cd08261         154 RAGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----  223 (337)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----
Confidence            34455677999998764 66777788874  5789999888777665543    3422112222223223333331    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ....+|+++-....   ...+..+++.|+++|.++.
T Consensus       224 ~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         224 DGEGADVVIDATGN---PASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            12568999743221   3456778889999998875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=91.68  E-value=2.9  Score=36.14  Aligned_cols=104  Identities=19%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  142 (237)
                      +...++.+||-+|+|. |..+..+|+... ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~---  253 (368)
T cd08300         182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT---  253 (368)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh---
Confidence            3456678999998642 334556677653 2379999999888776644    354221221111  1222222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                        .+.+|+|+-....   ...+....+.|+++ |.++.-..
T Consensus       254 --~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 --DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             --CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence              2468988643221   34667777899887 88776543

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.68  E-value=2.7  Score=35.90  Aligned_cols=104  Identities=15%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +...++.+||-.|+|. |..++.+++..  +. +|++++.+++..+.+++    .|.+.-+.....+..+.+..+.    
T Consensus       168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----  237 (351)
T cd08233         168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----  237 (351)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----
Confidence            3445667888887532 33445566654  44 89999988887776644    3532212222223333333221    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+++-...   ....++.+++.|+++|.++.-..
T Consensus       238 ~~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         238 GGGGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEcc
Confidence            1245999864332   13467778899999998887543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=91.56  E-value=1.2  Score=34.19  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=58.5

Q ss_pred             EcccccHHHHHHHhhCCCCCEEEEE--eCCchHHHH---HHHHHHhcCCCCcEEEE-eccchHHHHHHhhcCCCCCceeE
Q 026547           77 IGVFTGYSLLLTALTIPEDGQIMAI--DVNRETYEI---GLPVIKKAGVDHKINFI-ESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        77 iG~G~G~~~~~la~~~~~~~~v~~v--D~~~~~~~~---a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +|=|.=..++.|++......++++.  |-..+..+.   +..+++.... ..+.++ --|+.+.-....   .....||.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~---~~~~~FDr   78 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFR---LKNQRFDR   78 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCccccccc---ccCCcCCE
Confidence            4555556777888877644555554  443333322   3345544422 124443 346655433321   12578999


Q ss_pred             EEEeCCCcC----------------cHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVDADKVN----------------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+.+.++..                ...||+.+.++|+++|.|.+.
T Consensus        79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            987754322                357888999999999998875

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=91.44  E-value=0.59  Score=37.57  Aligned_cols=64  Identities=11%  Similarity=-0.020  Sum_probs=46.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......-|.|||.|.|..+..+..+-  -.++..+|.++.++.-.+-..+.+.  .+..++++|++.
T Consensus        46 A~~~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   46 AGNLTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             ccccccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            334456789999999999999998753  4589999999988765554443333  357777777754

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.38  E-value=0.57  Score=34.94  Aligned_cols=95  Identities=17%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC----C-cEEEEecc-chHHHHHHhhcCCCCC
Q 026547           74 TIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD----H-KINFIESE-ALSVLDQLLKDSENEG  146 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~-~v~~~~~d-~~~~~~~~~~~~~~~~  146 (237)
                      |+-+|+  |..+..+|..+. .+.+|+.+...+ .++.    +++.|+.    . ...+.... .......       ..
T Consensus         1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~   66 (151)
T PF02558_consen    1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD-------AG   66 (151)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH-------HS
T ss_pred             CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc-------cC
Confidence            345566  555555554441 266899999776 4443    3333321    1 11111111 1011011       38


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE-EeCc
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAV-YDNT  182 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv-~~~~  182 (237)
                      +||+||+........+.++.+.+.+.+++.++ +.|-
T Consensus        67 ~~D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG  103 (151)
T PF02558_consen   67 PYDLVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNG  103 (151)
T ss_dssp             TESEEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred             CCcEEEEEecccchHHHHHHHhhccCCCcEEEEEeCC
Confidence            99999999887788899999999999996554 4554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=91.23  E-value=2.5  Score=36.54  Aligned_cols=102  Identities=21%  Similarity=0.240  Sum_probs=59.3

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ....++.+||-.|+|. |..++.++++.+ ...+++++.+++..+.+++    .|...-+.....+..+.+..+.     
T Consensus       182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----  251 (365)
T cd08278         182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----  251 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----
Confidence            3345677888888643 555666777754 3369999998877665544    3432111111112222233321     


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+|+|+-....   ...+...++.|+++|.++.-
T Consensus       252 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         252 GGGVDYALDTTGV---PAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence            2568988643322   24567788899999988863

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=91.22  E-value=4.5  Score=34.20  Aligned_cols=102  Identities=18%  Similarity=0.212  Sum_probs=61.0

Q ss_pred             HHhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcC
Q 026547           65 LLKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDS  142 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~  142 (237)
                      .+...++.+||-.|+| .|..++.+|+... +.+|++++.+++..+.+++    .|.+.-+.... .+..+.+...    
T Consensus       157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~----  227 (338)
T PRK09422        157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK----  227 (338)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence            3445667789888853 2445556666532 5689999999888777643    35421111111 1112222222    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                        .+.+|.++++...   ...++.+++.|+++|.++.-
T Consensus       228 --~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~  260 (338)
T PRK09422        228 --TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV  260 (338)
T ss_pred             --cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence              2357877766532   45678888999999988753

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.17  E-value=1.1  Score=39.27  Aligned_cols=106  Identities=17%  Similarity=0.191  Sum_probs=59.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC------
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN------  144 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~------  144 (237)
                      .+|--+|-  ||.++.+|-.+.. +.+|+|+|+++..++..++     |   +.....-+....+....+.+.-      
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            45666665  5655555444432 5799999999988765543     2   1222222222223322221100      


Q ss_pred             --CCceeEEEEeCC------C-c---CcHHHHHHHHccCCCCeEEEEeCcCCCCc
Q 026547          145 --EGSFDYAFVDAD------K-V---NYWNYHERLMKLLKVGGIAVYDNTLWGGT  187 (237)
Q Consensus       145 --~~~~D~i~id~~------~-~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (237)
                        ...-|++++..+      . .   ......+.+.+.|++|-++++....+.|.
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence              124566655421      1 1   12345566678999999999999888773

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.13  E-value=3.1  Score=36.55  Aligned_cols=107  Identities=15%  Similarity=0.134  Sum_probs=60.5

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  143 (237)
                      +...++++||-.|+|. |..++.+|+... ...|+.+|.+++..+.+++    .|.. .+.... .+..+.+..+.    
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~----  250 (393)
T TIGR02819       181 AGVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL----  250 (393)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc----
Confidence            3455677887777643 334556677654 3346677888777776665    3532 111111 12223333321    


Q ss_pred             CCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+++--.....           ....++...+.+++||.+++-.+
T Consensus       251 ~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       251 GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            1246898864333221           12467888899999999988554

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.08  E-value=4.9  Score=32.03  Aligned_cols=82  Identities=17%  Similarity=0.118  Sum_probs=47.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--HHHhhc-CCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--DQLLKD-SENE  145 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~-~~~~  145 (237)
                      ++++||-.|++ |..+..+++.+ ..+.+|++++.+++..+...+.+...   .+++++.+|..+.-  ....++ ....
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            46789999975 55555555444 23679999999887665554444332   24788888765421  111110 0002


Q ss_pred             CceeEEEEeC
Q 026547          146 GSFDYAFVDA  155 (237)
Q Consensus       146 ~~~D~i~id~  155 (237)
                      +++|.++...
T Consensus        80 ~~id~ii~~a   89 (238)
T PRK05786         80 NAIDGLVVTV   89 (238)
T ss_pred             CCCCEEEEcC
Confidence            5678887654

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=91.07  E-value=3.8  Score=34.90  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc---hHHHHHHh
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA---LSVLDQLL  139 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~  139 (237)
                      .+...++.+||-.|+|. |..++.+|+..+  .+ |+.++.+++..+.+++    .|...-+.....+.   .+.+....
T Consensus       157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence            34455677888877654 556677787754  44 8899888777665544    24321112111121   12222221


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                          ....+|+|+-....   ...+...++.|+++|.++.-
T Consensus       231 ----~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         231 ----GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             ----CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence                12569988643321   23567778899999988754

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=91.06  E-value=6.2  Score=34.72  Aligned_cols=126  Identities=20%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      -.|....+-..++.+.++..++-..+|.+-.+..+...+..+.+|+..+. -.......+..+...|+  .+.++..+-.
T Consensus        53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~  130 (386)
T PF01053_consen   53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDL  130 (386)
T ss_dssp             C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSH
T ss_pred             ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhH
Confidence            45777777777888888888999999888876666555665778877764 33445566666666675  3556554333


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCCe--EEEEeCcCCCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVGG--IAVYDNTLWGG  186 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG--~lv~~~~~~~g  186 (237)
                      +.+....     .+..++||+......  ....++.+.++.+..|  .+++||.+..+
T Consensus       131 ~~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp  183 (386)
T PF01053_consen  131 EALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP  183 (386)
T ss_dssp             HHHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred             HHHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence            4443332     468999999864322  2344555655555544  66777775433

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=91.04  E-value=4  Score=34.69  Aligned_cols=102  Identities=21%  Similarity=0.257  Sum_probs=57.7

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++.+||-.|+|. |..+..+++..+ ..+|++++.++...+.+++    .|.+.-+.....+....+..+..    .
T Consensus       163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~----~  233 (345)
T cd08286         163 KVKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD----G  233 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC----C
Confidence            345567777776532 223445666543 2688889888766655543    35432233322332222333221    2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+|+++ +..  .....++.+.+.|+++|.++.-
T Consensus       234 ~~~d~vl-d~~--g~~~~~~~~~~~l~~~g~~v~~  265 (345)
T cd08286         234 RGVDVVI-EAV--GIPATFELCQELVAPGGHIANV  265 (345)
T ss_pred             CCCCEEE-ECC--CCHHHHHHHHHhccCCcEEEEe
Confidence            5699886 432  2234578888999999998753

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=90.80  E-value=3.7  Score=35.43  Aligned_cols=104  Identities=18%  Similarity=0.272  Sum_probs=58.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  142 (237)
                      +...++.+||-.|+|. |..+..+|+... ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  254 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---  254 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence            4456778999988642 224445666653 2389999999887776644    454221221111  1112222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                        .+.+|+++ |...  ....+....+.+++| |.+++-..
T Consensus       255 --~~~~d~vi-d~~G--~~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 --GGGVDYSF-ECTG--NIDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             --CCCCCEEE-ECCC--ChHHHHHHHHHhhcCCCEEEEECc
Confidence              23689775 3321  134566677888996 88876544

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=90.73  E-value=2.4  Score=37.17  Aligned_cols=107  Identities=12%  Similarity=0.033  Sum_probs=67.6

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-EEEEeccchHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-INFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~  137 (237)
                      +-+|..+.......+||-++=..|-.+++++.+-+     +.+--+--.....+.+++.+|+... ++++..  .+.+  
T Consensus        33 e~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~~--  103 (378)
T PRK15001         33 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLDS--TADY--  103 (378)
T ss_pred             HHHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeecc--cccc--
Confidence            33444444432223799999999999999985422     2231122233556788888887543 454432  2222  


Q ss_pred             HhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCCeEEEEeC
Q 026547          138 LLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                             .+.+|+|++-.++..  ....+..+.+.|.+|+.+++-.
T Consensus       104 -------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~  142 (378)
T PRK15001        104 -------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  142 (378)
T ss_pred             -------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence                   367999998877654  3456777778999999987643

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.63  E-value=4.8  Score=34.76  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=54.1

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++++||-.|+|. |..++.+|+..  +.+|++++.+++....+   .++.|..   .++.....+.+...      .+.
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~------~~~  247 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAA------IGT  247 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhh------cCC
Confidence            3567888888742 33455667764  46788888776543222   2234532   22211111222222      135


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|+|| |...  ....++...+.|++||.++.-.
T Consensus       248 ~D~vi-d~~g--~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        248 MDYII-DTVS--AVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CCEEE-ECCC--CHHHHHHHHHHhcCCcEEEEeC
Confidence            89887 4322  2346777889999999988644

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.54  E-value=3.9  Score=35.71  Aligned_cols=111  Identities=15%  Similarity=0.143  Sum_probs=73.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH-------HHHHhcCC-CCcEEEEeccchH--HHH
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGL-------PVIKKAGV-DHKINFIESEALS--VLD  136 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~-------~~~~~~~~-~~~v~~~~~d~~~--~~~  136 (237)
                      ...+.+...|+|+|.|......+.... ...=+|+++.....+.+.       +.++.+|. .+.++.++++..+  ...
T Consensus       189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~  267 (419)
T KOG3924|consen  189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT  267 (419)
T ss_pred             ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence            355778999999999999888776654 556788888765554443       22333454 3567888988655  333


Q ss_pred             HHhhcCCCCCceeEEEEeCCCcCcH--HHHHHHHccCCCCeEEEEeCcCC
Q 026547          137 QLLKDSENEGSFDYAFVDADKVNYW--NYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~~~~~--~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .+      ...-++||++.......  --+++++..+++|..|+-.+.+.
T Consensus       268 eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~  311 (419)
T KOG3924|consen  268 EI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV  311 (419)
T ss_pred             HH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence            33      35678888876543322  22346778889999998877664

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=90.48  E-value=0.98  Score=37.27  Aligned_cols=74  Identities=20%  Similarity=0.251  Sum_probs=44.5

Q ss_pred             HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHH
Q 026547           85 LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYH  164 (237)
Q Consensus        85 ~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~  164 (237)
                      ++.+.+..+ ..+|+++|.++..++.|++    .|..+.   ...+ .+.   +       ...|+|++..+.....+++
T Consensus         2 A~aL~~~g~-~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~~~---~-------~~~DlvvlavP~~~~~~~l   62 (258)
T PF02153_consen    2 ALALRKAGP-DVEVYGYDRDPETLEAALE----LGIIDE---ASTD-IEA---V-------EDADLVVLAVPVSAIEDVL   62 (258)
T ss_dssp             HHHHHHTTT-TSEEEEE-SSHHHHHHHHH----TTSSSE---EESH-HHH---G-------GCCSEEEE-S-HHHHHHHH
T ss_pred             hHHHHhCCC-CeEEEEEeCCHHHHHHHHH----CCCeee---ccCC-HhH---h-------cCCCEEEEcCCHHHHHHHH
Confidence            345555433 6799999999998876654    244221   1111 122   1       4568998888777777888


Q ss_pred             HHHHccCCCCeEE
Q 026547          165 ERLMKLLKVGGIA  177 (237)
Q Consensus       165 ~~~~~~L~~gG~l  177 (237)
                      +++.+.+++|+++
T Consensus        63 ~~~~~~~~~~~iv   75 (258)
T PF02153_consen   63 EEIAPYLKPGAIV   75 (258)
T ss_dssp             HHHHCGS-TTSEE
T ss_pred             HHhhhhcCCCcEE
Confidence            8888877776544

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=90.30  E-value=1.6  Score=36.64  Aligned_cols=94  Identities=10%  Similarity=0.065  Sum_probs=53.3

Q ss_pred             EEEEEcccccHHHH--HHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-----CcEEEEeccchHHHHHHhhcCCCC
Q 026547           73 KTIEIGVFTGYSLL--LTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-----HKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        73 ~vLeiG~G~G~~~~--~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +|+-+|+|.-..++  .|++.   +.+|+.++. ++..+..+    +.|+.     .... ............      .
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~---g~~V~~~~r-~~~~~~~~----~~g~~~~~~~~~~~-~~~~~~~~~~~~------~   66 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA---GRDVTFLVR-PKRAKALR----ERGLVIRSDHGDAV-VPGPVITDPEEL------T   66 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC---CCceEEEec-HHHHHHHH----hCCeEEEeCCCeEE-ecceeecCHHHc------c
Confidence            57788887654433  23332   457899987 55554433    22321     0011 011111111111      2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE-EeC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV-YDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv-~~~  181 (237)
                      ..+|+||+........+.++.+.+.+.++.+++ +.|
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~n  103 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQN  103 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeC
Confidence            679999998877778888898988888887665 344

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=90.30  E-value=0.2  Score=35.53  Aligned_cols=40  Identities=20%  Similarity=0.450  Sum_probs=28.0

Q ss_pred             ceeEEEEeCC---------CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          147 SFDYAFVDAD---------KVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       147 ~~D~i~id~~---------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      .||+|++-..         -.....+|+.+...|+|||.+|+.-=-|..
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s   49 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS   49 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence            4899987643         233568999999999999999997665543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.19  E-value=1.9  Score=36.90  Aligned_cols=98  Identities=12%  Similarity=0.013  Sum_probs=65.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC-cee
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG-SFD  149 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~~D  149 (237)
                      ..+++|+-||.|...+-|..+.  ---+.++|+++..++.-+.++..      ..++.+|..+....-.     .. .+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D   69 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD   69 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence            4589999999999988887642  24689999999999888877632      3456667665543221     12 788


Q ss_pred             EEEEeCCC----------------c-CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          150 YAFVDADK----------------V-NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~~~----------------~-~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +++-..++                . .+.++.+ +...++| -++++.|+-
T Consensus        70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r-~I~~~~P-~~fv~ENV~  118 (328)
T COG0270          70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIR-LIEQLRP-KFFVLENVK  118 (328)
T ss_pred             EEEeCCCCcchhhcCcccCCcCccceeeHHHHH-HHHhhCC-CEEEEecCc
Confidence            88643211                1 1234433 4477888 888999885

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=90.10  E-value=1.9  Score=38.54  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=63.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      ++|.+|||.--.+..+-+..  --.|+.+|.|+-.++.....-..  -.+...+...|.....       +.+++||.|+
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~-------fedESFdiVI  119 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLV-------FEDESFDIVI  119 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhcc-------CCCcceeEEE
Confidence            89999998877666554432  34799999999888766554321  1234667777765542       3468999987


Q ss_pred             EeC---------C----CcCcHHHHHHHHccCCCCeEEEE
Q 026547          153 VDA---------D----KVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       153 id~---------~----~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .-+         .    .......+..+.++|++||..+.
T Consensus       120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            321         1    11234567888899999997554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=90.09  E-value=3.2  Score=36.85  Aligned_cols=105  Identities=17%  Similarity=0.189  Sum_probs=56.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC-----CCC
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS-----ENE  145 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-----~~~  145 (237)
                      .+|.-||.|.  .+..+|..+. .+.+|+++|.+++.++..+.     |.   +.+...+..+.+....+.+     ...
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----GE---IHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----CC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            4677788754  3343443332 25689999999988764321     21   1111112222221110000     001


Q ss_pred             CceeEEEEeCCCc----------CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          146 GSFDYAFVDADKV----------NYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       146 ~~~D~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      +.-|+||+..+..          ......+.+.+.+++|.++|.......|
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg  124 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG  124 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence            3568888775542          3445567777889998888777665444

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=90.07  E-value=1.6  Score=36.14  Aligned_cols=65  Identities=14%  Similarity=0.097  Sum_probs=42.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP----EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      .+...++|.|||.|..+.+++..++    ....++.||...... .+-..++.......++=+..|+.++
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl   85 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDL   85 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeecc
Confidence            3556899999999999999999884    257899999855333 2333333332112455566666653

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.06  E-value=5  Score=34.62  Aligned_cols=104  Identities=21%  Similarity=0.331  Sum_probs=59.1

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  142 (237)
                      ....++.+||-+|+|. |..+..+|+... ..+|++++.+++..+.+++    .|...-+.....  +..+.+..+.   
T Consensus       180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~---  251 (365)
T cd08277         180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT---  251 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh---
Confidence            3455678999888642 334455677653 2379999998887776644    354221221111  1122222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                        ...+|+|+-....   ...+...++.++++ |.++.-..
T Consensus       252 --~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         252 --GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             --CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence              2468988633221   34567778889885 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=89.96  E-value=8.3  Score=32.73  Aligned_cols=97  Identities=22%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ..+.+|+-+|+  |..+..+++.+.  ...+|+.++.+++..+...+   ..|.    ....  ..+....+       .
T Consensus       176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~---~~g~----~~~~--~~~~~~~l-------~  237 (311)
T cd05213         176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAK---ELGG----NAVP--LDELLELL-------N  237 (311)
T ss_pred             ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH---HcCC----eEEe--HHHHHHHH-------h
Confidence            46789999998  555544444332  13589999998765533322   2232    2222  11222222       5


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..|+||.-.....+...++...+....++.+++|-..
T Consensus       238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            6899988766555544455554444346788887654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.95  E-value=5.3  Score=35.04  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             EEEEEcc-cccH--HHHHHHhhCCCC---CEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           73 KTIEIGV-FTGY--SLLLTALTIPED---GQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        73 ~vLeiG~-G~G~--~~~~la~~~~~~---~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      .|+=+|- |+|-  +..-+|.++.+.   .-++|-|- -+.+.++.+.+..+.++.-...+-..|.......-.+. +-.
T Consensus       103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~-fKk  181 (483)
T KOG0780|consen  103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR-FKK  181 (483)
T ss_pred             EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH-HHh
Confidence            4555553 3333  333455555332   34566664 44666778887777664321222233443333221111 235


Q ss_pred             CceeEEEEeCC--CcCcHHHHHHHH---ccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDAD--KVNYWNYHERLM---KLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~--~~~~~~~~~~~~---~~L~~gG~lv~~~~~  183 (237)
                      +.||+|++|..  +......|+++.   +.++|+-+|++-|..
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas  224 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS  224 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence            89999999965  333455666665   789999888776543

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=89.92  E-value=3.6  Score=35.44  Aligned_cols=100  Identities=20%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ..++.+||-.|+| .|..+..+++..+ ...+++++.+++..+.+++    .|...-+.....+..+.+....    ...
T Consensus       185 ~~~g~~VlI~g~g~vG~~~~~lak~~G-~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~  255 (367)
T cd08263         185 VRPGETVAVIGVGGVGSSAIQLAKAFG-ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGR  255 (367)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCC
Confidence            3566778877654 3445566777653 2238999888776665533    3432111111122222222221    135


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+|+|+-... .  ....+.+++.|+++|.++.
T Consensus       256 ~~d~vld~vg-~--~~~~~~~~~~l~~~G~~v~  285 (367)
T cd08263         256 GVDVVVEALG-K--PETFKLALDVVRDGGRAVV  285 (367)
T ss_pred             CCCEEEEeCC-C--HHHHHHHHHHHhcCCEEEE
Confidence            6999873322 2  1356778899999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=89.92  E-value=3.9  Score=33.01  Aligned_cols=80  Identities=13%  Similarity=0.110  Sum_probs=45.9

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ...+|+-+|||. |...+..+...+ -++++.+|.+.                   ...+.+.+.+++.+..-+++.+..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            467899999974 333333222233 46888886433                   345566777776664445666555


Q ss_pred             cch-HHHHHHhhcCCCCCceeEEEEeCC
Q 026547          130 EAL-SVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       130 d~~-~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      ... +.+..+      ...+|+|+...+
T Consensus        99 ~i~~~~~~~~------~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEEL------IAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHHH------HhCCCEEEEcCC
Confidence            441 222232      257999986554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=89.92  E-value=0.31  Score=34.49  Aligned_cols=32  Identities=16%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVN  104 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~  104 (237)
                      +....+|||||.|...--|..   ++-+-.|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~---EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNS---EGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHHh---CCCCccccccc
Confidence            455899999999987655544   35577899964

; GO: 0008168 methyltransferase activity

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=89.91  E-value=6.7  Score=32.19  Aligned_cols=116  Identities=9%  Similarity=0.053  Sum_probs=80.9

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .......++..+-..+++.. |..-+|+=..+..+.+.   .-++..+|+.|+-....+++|+   ...++++..+|...
T Consensus        73 lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~  145 (279)
T COG2961          73 LPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFL  145 (279)
T ss_pred             chHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHH
Confidence            34556666666666666555 88888888888777763   5699999999999998898886   24579999999888


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCC--CCeEEEE
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLK--VGGIAVY  179 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~--~gG~lv~  179 (237)
                      .+....   ++.++=-+|+||.+-   ..+....+.+.+.++  ++|+.++
T Consensus       146 ~l~a~L---PP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai  193 (279)
T COG2961         146 ALKAHL---PPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI  193 (279)
T ss_pred             HHhhhC---CCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence            666543   234667899999753   345555555544443  4566654

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=89.87  E-value=1.1  Score=37.80  Aligned_cols=94  Identities=15%  Similarity=0.069  Sum_probs=62.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      +++|+-||.|..++-+..+.  --.+.++|+++...+.-+.++.        ....+|+.+......     ...+|+++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l-----~~~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL-----PKDVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH-----HHT-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc-----cccceEEE
Confidence            68999999999998887652  2478999999999988888872        778888877654421     11599987


Q ss_pred             EeCCCc---------------C--cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          153 VDADKV---------------N--YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       153 id~~~~---------------~--~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ...+++               +  +.++++.+ +.++| -++++.|+.
T Consensus        67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~P-k~~~~ENV~  112 (335)
T PF00145_consen   67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKP-KYFLLENVP  112 (335)
T ss_dssp             EE---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS--SEEEEEEEG
T ss_pred             eccCCceEeccccccccccccchhhHHHHHHH-hhccc-eEEEecccc
Confidence            642211               1  23444444 56788 567778874

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=89.86  E-value=1.7  Score=36.34  Aligned_cols=87  Identities=22%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+|+-+|.  |..+.++++.+..   ...|++.|.+....+.+.+    .|..+    -..+  +.....      ....
T Consensus         4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d----~~~~--~~~~~~------~~~a   65 (279)
T COG0287           4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID----ELTV--AGLAEA------AAEA   65 (279)
T ss_pred             cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc----cccc--chhhhh------cccC
Confidence            46777775  5555555554432   3456777777665554433    23211    1111  110111      2567


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGI  176 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~  176 (237)
                      |+|++..+.....++++++.+.|++|.+
T Consensus        66 D~VivavPi~~~~~~l~~l~~~l~~g~i   93 (279)
T COG0287          66 DLVIVAVPIEATEEVLKELAPHLKKGAI   93 (279)
T ss_pred             CEEEEeccHHHHHHHHHHhcccCCCCCE
Confidence            8999888888888888888877877544

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=89.83  E-value=3.2  Score=35.01  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           73 KTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        73 ~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      +||-+||| .|...+..+...+ -++++.+|.+.                   ...+.|.+++.+.+..-+++.+.++..
T Consensus         1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            47888885 2333222222223 46888888533                   234556666766665556777777765


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      +....+      ..+||+|+...+
T Consensus        80 ~~~~~f------~~~fdvVi~alD   97 (291)
T cd01488          80 DKDEEF------YRQFNIIICGLD   97 (291)
T ss_pred             chhHHH------hcCCCEEEECCC
Confidence            543333      378999986544

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=89.74  E-value=1  Score=29.72  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             cCCCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCc
Q 026547           69 VNAKKTIEIGVFTGYS-LLLTALTIPEDGQIMAIDVNR  105 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~-~~~la~~~~~~~~v~~vD~~~  105 (237)
                      ..|++||-||+-+|+- +..++.++.-++..++|-.+.
T Consensus        37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk   74 (78)
T PF12242_consen   37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK   74 (78)
T ss_dssp             TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred             CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence            5678999999999994 444555555567877776543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.71  E-value=3.8  Score=36.47  Aligned_cols=73  Identities=12%  Similarity=0.067  Sum_probs=49.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~  147 (237)
                      .++|+-+|+  |..+..+++.+.. +..|+.+|.+++..+..++..      ..+.++.||+.+.  +...     ....
T Consensus       231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~~  297 (453)
T PRK09496        231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GIDE  297 (453)
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCcc
Confidence            468999888  6777767666643 568999999998877665532      2367889998653  2222     2467


Q ss_pred             eeEEEEeCC
Q 026547          148 FDYAFVDAD  156 (237)
Q Consensus       148 ~D~i~id~~  156 (237)
                      +|.|++...
T Consensus       298 a~~vi~~~~  306 (453)
T PRK09496        298 ADAFIALTN  306 (453)
T ss_pred             CCEEEECCC
Confidence            888876543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=89.42  E-value=2.5  Score=35.59  Aligned_cols=79  Identities=13%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  146 (237)
                      ++++||-.| |+|+.+.++++.+- .+.+|++++.++.............+..++++++.+|..+.  +...      ..
T Consensus         3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~------~~   75 (322)
T PLN02662          3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV------VD   75 (322)
T ss_pred             CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH------Hc
Confidence            457888888 47888888777663 24588888876654322222211112234688999988653  2222      25


Q ss_pred             ceeEEEEeC
Q 026547          147 SFDYAFVDA  155 (237)
Q Consensus       147 ~~D~i~id~  155 (237)
                      .+|.||..+
T Consensus        76 ~~d~Vih~A   84 (322)
T PLN02662         76 GCEGVFHTA   84 (322)
T ss_pred             CCCEEEEeC
Confidence            679887654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.28  E-value=4.7  Score=35.79  Aligned_cols=88  Identities=10%  Similarity=0.037  Sum_probs=56.4

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..+++|+-+|+|. |......++.+  +++|+.+|.++...+.|+.    .|.    +..  +..+.   .       ..
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~---v-------~~  257 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEEA---V-------KE  257 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHHH---H-------cC
Confidence            3678999999986 44444555554  4689999999887776654    343    211  11111   1       45


Q ss_pred             eeEEEEeCCCcCcHHHHHH-HHccCCCCeEEEEeC
Q 026547          148 FDYAFVDADKVNYWNYHER-LMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~-~~~~L~~gG~lv~~~  181 (237)
                      .|+|+....   ....+.. ..+.+++||+++.-.
T Consensus       258 aDVVI~atG---~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         258 GDIFVTTTG---NKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCEEEECCC---CHHHHHHHHHhcCCCCcEEEEeC
Confidence            798875432   2345554 378999999987654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=89.26  E-value=8.3  Score=32.74  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ..++.+||-.|+| .|..++.+++..  +.+ |++++.+++..+.+++    .|...-+.....+..+.+..+.    ..
T Consensus       159 ~~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~  228 (340)
T TIGR00692       159 PISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DG  228 (340)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CC
Confidence            3456677766654 344556677765  444 8888777665554443    3532112222233333333331    13


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+|+++-....   ...+..+++.|+++|.++.-
T Consensus       229 ~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       229 EGVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence            568998753222   34567788899999988764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=89.17  E-value=6.4  Score=33.38  Aligned_cols=102  Identities=21%  Similarity=0.257  Sum_probs=58.8

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      .+...++.+||-.|+|. |..+..+|+..+  .+ +++++.+++..+.++    ..|...-+...... .+.+....   
T Consensus       154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~---  223 (343)
T cd08236         154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT---  223 (343)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh---
Confidence            34455677898888755 556667777653  44 899988776655443    33532111211112 22222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       ....+|+++-...   ....+..+.+.|+++|.++.-
T Consensus       224 -~~~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         224 -EGRGADLVIEAAG---SPATIEQALALARPGGKVVLV  257 (343)
T ss_pred             -CCCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence             1245999874321   134567788999999988764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=89.06  E-value=1.8  Score=36.78  Aligned_cols=38  Identities=18%  Similarity=0.163  Sum_probs=31.4

Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE-EeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV-YDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv-~~~~  182 (237)
                      ...+|+|++....-+..+.++.+.+.+++..+++ +.|-
T Consensus        65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG  103 (307)
T COG1893          65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNG  103 (307)
T ss_pred             cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCC
Confidence            4689999999888888899999999999998554 4554

>cd05281 TDH Threonine dehydrogenase

Probab=89.06  E-value=8.7  Score=32.63  Aligned_cols=99  Identities=20%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++.+||-.|+|. |..+..+++... ..+|++++.+++..+.+++    .|....+.....+.. .+..+.    ....
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~~  231 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAAG-ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGTG  231 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCCC
Confidence            4566777777643 445666777653 2278888766655554443    343211111122222 222221    1357


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|+|+-....   ......+.+.|+++|.++.-
T Consensus       232 vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         232 VDVVLEMSGN---PKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence            9998743321   34567778899999988753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.06  E-value=4.3  Score=36.13  Aligned_cols=94  Identities=15%  Similarity=0.024  Sum_probs=56.6

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.   .    .+.++.||+.+...-...   ....+|.|
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~~l~~~---~~~~a~~v   69 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPDVLREA---GAEDADLL   69 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHHHHHHc---CCCcCCEE
Confidence            5777776  788888877664 256899999999887665542   1    267888887653211111   13678888


Q ss_pred             EEeCCCcCcHHHHHHHHccCCCC-eEEE
Q 026547          152 FVDADKVNYWNYHERLMKLLKVG-GIAV  178 (237)
Q Consensus       152 ~id~~~~~~~~~~~~~~~~L~~g-G~lv  178 (237)
                      ++...............+.+.+. .+++
T Consensus        70 i~~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         70 IAVTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             EEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            87654333333333344555333 4444

>PRK08324 short chain dehydrogenase; Validated

Probab=88.97  E-value=4.6  Score=38.28  Aligned_cols=80  Identities=15%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .++.||-+|++ |..+..+++.+. .+.+|+.++.+++..+.+.+.+...   .++.++.+|..+.      +....+. 
T Consensus       421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~-  495 (681)
T PRK08324        421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA-  495 (681)
T ss_pred             CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence            34788988853 444454444332 3579999999987776655544322   3577888776442      2222111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|+|+....
T Consensus       496 --~g~iDvvI~~AG  507 (681)
T PRK08324        496 --FGGVDIVVSNAG  507 (681)
T ss_pred             --cCCCCEEEECCC
Confidence              257899987654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.91  E-value=2.5  Score=35.26  Aligned_cols=85  Identities=14%  Similarity=0.064  Sum_probs=49.6

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      +|.-||+|  ..+..++..+. .+.+|+++|.+++..+.+.+.    |.   +.....+. +   .       ....|+|
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV   61 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV   61 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence            46667764  44444444332 245899999998877665442    32   11111111 1   1       1467888


Q ss_pred             EEeCCCcCcHHHHHHHHccCCCCeEE
Q 026547          152 FVDADKVNYWNYHERLMKLLKVGGIA  177 (237)
Q Consensus       152 ~id~~~~~~~~~~~~~~~~L~~gG~l  177 (237)
                      ++..+.....+.++.+.+.++++.++
T Consensus        62 ilavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         62 ILALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence            88877666667777777777776433

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=88.89  E-value=17  Score=32.49  Aligned_cols=79  Identities=13%  Similarity=0.090  Sum_probs=41.9

Q ss_pred             CCEEEEEc-ccccHHHH--HHHhhCC---CCCEEEEEeCCchH---HHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           71 AKKTIEIG-VFTGYSLL--LTALTIP---EDGQIMAIDVNRET---YEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        71 ~~~vLeiG-~G~G~~~~--~la~~~~---~~~~v~~vD~~~~~---~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ++.++=+| +|+|-.|.  .+|..+.   .+.+|..++.++..   .+..+.+.+..++.  +.. ..+..++...+.. 
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~-  296 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ-  296 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH-
Confidence            45677778 67776554  3443322   24588888888753   33444444444542  211 1222233222221 


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         ...+|+|++|..
T Consensus       297 ---~~~~DlVlIDt~  308 (424)
T PRK05703        297 ---LRDCDVILIDTA  308 (424)
T ss_pred             ---hCCCCEEEEeCC
Confidence               257999999954

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=88.84  E-value=8.7  Score=29.23  Aligned_cols=133  Identities=10%  Similarity=0.032  Sum_probs=70.4

Q ss_pred             EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--HHHhhcCCCCCceeE
Q 026547           74 TIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--DQLLKDSENEGSFDY  150 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~~~~D~  150 (237)
                      |+-+| |+|..+..+++.+ ..+.+|+++-.+++..+.          ..+++++.+|..+.-  ...      ....|.
T Consensus         1 I~V~G-atG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a------l~~~d~   63 (183)
T PF13460_consen    1 ILVFG-ATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA------LKGADA   63 (183)
T ss_dssp             EEEET-TTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH------HTTSSE
T ss_pred             eEEEC-CCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhh------hhhcch
Confidence            34455 5788887777665 235799999999885544          346999999987752  222      257899


Q ss_pred             EEEeCCCcC-cHHHHHHHHccCC---CCeEEEEeCcCCCCcccCC-CCCCCccccchHHHHHHHHHHhhcCCCceEEee
Q 026547          151 AFVDADKVN-YWNYHERLMKLLK---VGGIAVYDNTLWGGTVAMS-EEQVPDHLRGGRQATLDLNRSLADDPRIQLSHV  224 (237)
Q Consensus       151 i~id~~~~~-~~~~~~~~~~~L~---~gG~lv~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  224 (237)
                      ||....... .....+.+.+.++   ..-++++......+..... ....+..........++..+.+.++ ++.++++
T Consensus        64 vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~iv  141 (183)
T PF13460_consen   64 VIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRES-GLNWTIV  141 (183)
T ss_dssp             EEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHHS-TSEEEEE
T ss_pred             hhhhhhhhcccccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHhc-CCCEEEE
Confidence            887653211 1233333333332   3334555544432211110 0001111123344445555666554 7777665

...

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=88.83  E-value=5.3  Score=32.67  Aligned_cols=94  Identities=13%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ....++.+||-.|+|. |..+..+|+...  .+ |++++.+++..+.+++    .|..+.+.....   ..   .     
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~---~~---~-----  155 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEA----LGPADPVAADTA---DE---I-----  155 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH----cCCCccccccch---hh---h-----
Confidence            4455678899888765 556667777654  45 9999988887765554    231111110000   01   1     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ....+|+|+.....   ...++...+.|+++|.++.
T Consensus       156 ~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         156 GGRGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence            13579988754322   3456777889999998875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=88.79  E-value=4.5  Score=33.81  Aligned_cols=92  Identities=12%  Similarity=0.007  Sum_probs=53.0

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC---CcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD---HKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      +|+-+|+|.-.  ..++..+. .+.+|+.++.+++..+..++    .|..   ..... ..........       ...+
T Consensus         2 ~I~IiG~G~~G--~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~-~~~~~~~~~~-------~~~~   67 (304)
T PRK06522          2 KIAILGAGAIG--GLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITV-PVLAADDPAE-------LGPQ   67 (304)
T ss_pred             EEEEECCCHHH--HHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceee-cccCCCChhH-------cCCC
Confidence            57888886533  33333322 24589999987766554433    2321   11110 0000111111       2679


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      |+|++..........++.+.+.+.++..++
T Consensus        68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv   97 (304)
T PRK06522         68 DLVILAVKAYQLPAALPSLAPLLGPDTPVL   97 (304)
T ss_pred             CEEEEecccccHHHHHHHHhhhcCCCCEEE
Confidence            999998877777888899988888876554

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=88.78  E-value=13  Score=32.71  Aligned_cols=101  Identities=18%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHH------------HHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           73 KTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLP------------VIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      +|--+|+  ||.++..+..+.. +-.|+|+|+++..++..++            .+++.....|.++- .|...   .. 
T Consensus         2 kI~viGt--GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~---a~-   74 (414)
T COG1004           2 KITVIGT--GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEE---AV-   74 (414)
T ss_pred             ceEEECC--chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHH---HH-
Confidence            3455666  5544433222221 3589999999998876653            22222222223321 12211   11 


Q ss_pred             hcCCCCCceeEEEEeCCCc----------CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          140 KDSENEGSFDYAFVDADKV----------NYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                            ..-|++|+..+.+          ......+.+.+.++..-++|+......|
T Consensus        75 ------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG  125 (414)
T COG1004          75 ------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG  125 (414)
T ss_pred             ------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence                  4567888753321          1234555566777777888887666544

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=88.73  E-value=4.8  Score=32.81  Aligned_cols=76  Identities=16%  Similarity=0.107  Sum_probs=42.4

Q ss_pred             EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           73 KTIEIGVFTGYSLLLTALTI--PEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~--~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      +||-+|+|  ..+..+++.+  ..-++++.+|.+.                   ...+.+.+++++.+..-+++.+..+.
T Consensus         1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV   78 (234)
T ss_pred             CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            47888885  3333333322  1146888888643                   22345566666665444566666665


Q ss_pred             ---hHHHHHHhhcCCCCCceeEEEEeCC
Q 026547          132 ---LSVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       132 ---~~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                         .++...+      ...||+|+...+
T Consensus        79 ~~~~~~~~~f------~~~~DvVi~a~D  100 (234)
T cd01484          79 GPEQDFNDTF------FEQFHIIVNALD  100 (234)
T ss_pred             ChhhhchHHH------HhCCCEEEECCC
Confidence               2222222      378999986544

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=88.72  E-value=6  Score=28.40  Aligned_cols=86  Identities=13%  Similarity=0.060  Sum_probs=53.4

Q ss_pred             HHHHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           63 AMLLKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ..++.....++|+|+|.|.=. .+..++++   +..|+++|+++..   +       +  .-+++...|..+.--.+   
T Consensus         6 ~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~~---a-------~--~g~~~v~DDitnP~~~i---   67 (129)
T COG1255           6 EYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEKT---A-------P--EGLRFVVDDITNPNISI---   67 (129)
T ss_pred             HHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEeccccc---C-------c--ccceEEEccCCCccHHH---
Confidence            345566677799999996544 34455553   5789999998871   1       1  23788888886643333   


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHc
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMK  169 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~  169 (237)
                         -..-|+|+.--........+=.+.+
T Consensus        68 ---Y~~A~lIYSiRpppEl~~~ildva~   92 (129)
T COG1255          68 ---YEGADLIYSIRPPPELQSAILDVAK   92 (129)
T ss_pred             ---hhCccceeecCCCHHHHHHHHHHHH
Confidence               2677888865544443333333333

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=88.67  E-value=2.8  Score=35.53  Aligned_cols=95  Identities=18%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+||-.|+|. |..+..+++..+ -.++++++.+++..+.+++    .+..   .++..+..+ +..+..   ....+
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~v  232 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGDF  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCCc
Confidence            677888888765 556667777653 2278999988777664443    3432   222221111 112211   12459


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |+++-....   ...++..++.|+++|.++.
T Consensus       233 d~vld~~g~---~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         233 DVVFEASGA---PAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             cEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            998643321   3457778899999998885

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PLN02256 arogenate dehydrogenase

Probab=88.61  E-value=6.2  Score=33.46  Aligned_cols=89  Identities=18%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +......+|.-||+  |..+..++..+.. +.+|+++|.++. .+.+    ...|.    .. ..+..+.+         
T Consensus        31 ~~~~~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~---------   89 (304)
T PLN02256         31 LEKSRKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC---------   89 (304)
T ss_pred             hccCCCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh---------
Confidence            33445668999997  5555555554432 358999998863 2222    22342    21 12222221         


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHH-HccCCCCe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERL-MKLLKVGG  175 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~-~~~L~~gG  175 (237)
                      ....|+|++........++++.+ ...++++.
T Consensus        90 ~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~  121 (304)
T PLN02256         90 EEHPDVVLLCTSILSTEAVLRSLPLQRLKRST  121 (304)
T ss_pred             hCCCCEEEEecCHHHHHHHHHhhhhhccCCCC
Confidence            13468888877666666677766 45566655

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=88.55  E-value=4.4  Score=36.08  Aligned_cols=103  Identities=21%  Similarity=0.303  Sum_probs=58.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH---hcCC-----CCcEEEEeccchHHHHHHhhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK---KAGV-----DHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~-----~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ++.+|--||.  |+.++.+|..+..+-+|+++|++++.++..++-..   +.++     ..+..+ ..+. +.       
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~-t~~~-~~-------   73 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKF-TSEI-EK-------   73 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeE-EeCH-HH-------
Confidence            3456767765  77777777777656799999999988876552110   0000     001111 1111 11       


Q ss_pred             CCCCCceeEEEEeCCCc-------CcHHH---HHHHHccCCCCeEEEEeCcCCCC
Q 026547          142 SENEGSFDYAFVDADKV-------NYWNY---HERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~-------~~~~~---~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                         ...-|++|+..+..       +....   .+.+.+.|++|.++|.......|
T Consensus        74 ---~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg  125 (425)
T PRK15182         74 ---IKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG  125 (425)
T ss_pred             ---HcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence               15678888754322       22222   34566888998888887766544

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=88.55  E-value=5.3  Score=34.79  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHHHhhcC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQLLKDS  142 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~  142 (237)
                      ....+.+||-.|+|. |..++.+|+..+ ..+|++++.+++..+.+++    .|....+.....   +..+.+..+.   
T Consensus       200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~---  271 (384)
T cd08265         200 GFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT---  271 (384)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc---
Confidence            344567888777632 223445666543 2379999988775544443    454221111111   2222232331   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       ....+|+|+ +... .....++...+.|+++|.++.-
T Consensus       272 -~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         272 -KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             -CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence             124689876 4422 2245677788899999998864

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=88.47  E-value=4  Score=29.84  Aligned_cols=79  Identities=18%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             CCEEEEEccc-ccHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           71 AKKTIEIGVF-TGYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        71 ~~~vLeiG~G-~G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ..+|+-+||| .|...+ .|++. + -++++-+|.+.                   ...+.+++.+.+....-+++.+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~-G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS-G-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH-T-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh-C-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            4589999996 344333 33332 2 46899998532                   235667777777765556777777


Q ss_pred             cc-hHHHHHHhhcCCCCCceeEEEEeCCC
Q 026547          130 EA-LSVLDQLLKDSENEGSFDYAFVDADK  157 (237)
Q Consensus       130 d~-~~~~~~~~~~~~~~~~~D~i~id~~~  157 (237)
                      +. .+....+      .+.+|+|+.....
T Consensus        80 ~~~~~~~~~~------~~~~d~vi~~~d~  102 (135)
T PF00899_consen   80 KIDEENIEEL------LKDYDIVIDCVDS  102 (135)
T ss_dssp             HCSHHHHHHH------HHTSSEEEEESSS
T ss_pred             cccccccccc------ccCCCEEEEecCC
Confidence            66 3334444      2578999865543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.43  E-value=2.4  Score=37.31  Aligned_cols=100  Identities=17%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---CCC-----CcEEEEec-cchHHHHHHhhcCCC
Q 026547           74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---GVD-----HKINFIES-EALSVLDQLLKDSEN  144 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~-----~~v~~~~~-d~~~~~~~~~~~~~~  144 (237)
                      |--||.  |+.++.+|..+..+-+|+++|++++.++..++.....   ++.     .+.++... +..+.          
T Consensus         3 I~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~----------   70 (388)
T PRK15057          3 ITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA----------   70 (388)
T ss_pred             EEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----------
Confidence            445555  5555554444333568999999999988776521100   000     01122111 11111          


Q ss_pred             CCceeEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          145 EGSFDYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       145 ~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      ...-|+|++..+..           ...+..+.+.+ +++|.++|.......|
T Consensus        71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg  122 (388)
T PRK15057         71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG  122 (388)
T ss_pred             hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence            14568888764432           12344555666 6888887777666544

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=88.25  E-value=17  Score=32.91  Aligned_cols=101  Identities=16%  Similarity=0.090  Sum_probs=54.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHH---hcCCC-------C-cEEEEeccchHHHHHH
Q 026547           73 KTIEIGVFTGYSLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIK---KAGVD-------H-KINFIESEALSVLDQL  138 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~---~~~~~-------~-~v~~~~~d~~~~~~~~  138 (237)
                      +|.-+|+|.....  +|..+..   +.+|+++|.+++.++..++-..   +.++.       . +.. ...|..+.    
T Consensus         3 ~I~ViG~GyvGl~--~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~-~t~~~~~~----   75 (473)
T PLN02353          3 KICCIGAGYVGGP--TMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLF-FSTDVEKH----   75 (473)
T ss_pred             EEEEECCCHHHHH--HHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEE-EEcCHHHH----
Confidence            5777877555443  3333221   3679999999998876553210   00100       0 011 11111111    


Q ss_pred             hhcCCCCCceeEEEEeCC--C----------c---CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          139 LKDSENEGSFDYAFVDAD--K----------V---NYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~--~----------~---~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                            ...-|++|+..+  .          .   ......+.+.+.|++|-++++......|
T Consensus        76 ------i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G  132 (473)
T PLN02353         76 ------VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK  132 (473)
T ss_pred             ------HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence                  145677776432  1          1   2345566667888988888888777655

>PRK06940 short chain dehydrogenase; Provisional

Probab=88.23  E-value=7.1  Score=32.22  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=50.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCcee
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSFD  149 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~D  149 (237)
                      +.+|-.|+  |..+..+++.+..+.+|+.++.+++.++...+.++..+  .++.++.+|..+.  +..+.+.-...+.+|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            45676775  46888888777667899999998876665555554433  3577788776542  111111100136789


Q ss_pred             EEEEeCC
Q 026547          150 YAFVDAD  156 (237)
Q Consensus       150 ~i~id~~  156 (237)
                      .++..+.
T Consensus        79 ~li~nAG   85 (275)
T PRK06940         79 GLVHTAG   85 (275)
T ss_pred             EEEECCC
Confidence            9987654

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.09  E-value=1.8  Score=37.30  Aligned_cols=101  Identities=11%  Similarity=-0.010  Sum_probs=58.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh-cCCC------CcEEEEeccchHHHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK-AGVD------HKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~------~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ...+|.-||+|.-..++  +..+...+.++.+..+++..+..++.-.. ..+.      .++.+ ..|..+.        
T Consensus         6 ~~mkI~IiGaGa~G~al--A~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~-t~d~~~a--------   74 (341)
T PRK12439          6 REPKVVVLGGGSWGTTV--ASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRA-TTDFAEA--------   74 (341)
T ss_pred             CCCeEEEECCCHHHHHH--HHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEE-ECCHHHH--------
Confidence            44679999996655433  33222234677777888776655542100 0111      11111 1222211        


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeE-EEEeCcC
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGI-AVYDNTL  183 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~-lv~~~~~  183 (237)
                        ....|+|++........+.++.+.+.++++.. +.+.+-+
T Consensus        75 --~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         75 --ANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             --HhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence              25679999988877788889999888888764 4445433

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=88.01  E-value=7.5  Score=32.75  Aligned_cols=98  Identities=12%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             CCCEEEEE--cc-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           70 NAKKTIEI--GV-FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLei--G~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      .+..+|-+  |+ +.|..++.+|+..  +.+|++++.+++..+.+++    .|.+.-+.....+..+.+..+.    ...
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~  211 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL  211 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence            34455554  32 3455566677765  5689999988877766654    4542212222223323332221    124


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+|+++-....    .......+.++++|.++.-.
T Consensus       212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~g  242 (324)
T cd08291         212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVYG  242 (324)
T ss_pred             CCcEEEECCCc----HHHHHHHHhhCCCCEEEEEE
Confidence            68988733221    22344568889999887643

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=87.94  E-value=7.2  Score=33.64  Aligned_cols=79  Identities=15%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             CCCEEEEEcccc-cHHH-HHHHhhCCCCCEEEEEeCCc---------------------hHHHHHHHHHHhcCCCCcEEE
Q 026547           70 NAKKTIEIGVFT-GYSL-LLTALTIPEDGQIMAIDVNR---------------------ETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~-~~la~~~~~~~~v~~vD~~~---------------------~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      ...+||-+|||. |... .+|++. + -++++.+|.+.                     ...+.+++.+++.+..-+++.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            567899999974 3332 234432 2 46899999863                     234556667766654434566


Q ss_pred             EeccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          127 IESEALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       127 ~~~d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      +..+... ....+      ...||+|+.-.+
T Consensus       101 ~~~~~~~~~~~~~------~~~~DlVid~~D  125 (339)
T PRK07688        101 IVQDVTAEELEEL------VTGVDLIIDATD  125 (339)
T ss_pred             EeccCCHHHHHHH------HcCCCEEEEcCC
Confidence            6555432 22222      367999875433

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=87.87  E-value=1.6  Score=37.23  Aligned_cols=93  Identities=11%  Similarity=-0.041  Sum_probs=59.3

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEE
Q 026547           74 TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFV  153 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~i  153 (237)
                      |+|+.||.|..++-+..+-  --.+.++|+++...+..+.++.     +  .++.+|+.+....-      ...+|+++.
T Consensus         1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEEe
Confidence            6899999999998886542  2246789999998888777752     1  44567877654321      246898875


Q ss_pred             eCCC------------cC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          154 DADK------------VN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       154 d~~~------------~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..+.            .+     +.++++.+ +.++| -++++.|+.
T Consensus        66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~P-~~~v~ENV~  110 (315)
T TIGR00675        66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRIL-KEKKP-KFFLLENVK  110 (315)
T ss_pred             cCCCcccchhcccCCCCCchhhHHHHHHHHH-hhcCC-CEEEeeccH
Confidence            3211            01     22333333 55677 477888874

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.85  E-value=5.1  Score=33.50  Aligned_cols=96  Identities=15%  Similarity=0.058  Sum_probs=54.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--------CCC---------CcEEEEeccchHH
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--------GVD---------HKINFIESEALSV  134 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~  134 (237)
                      ++|.-||+|.=..++....+.. +.+|+.+|.+++.++.+++.+++.        .+.         .++.+ ..|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence            4788888865443332222212 568999999999888877654221        111         12221 1222111


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCc--CcHHHHHHHHccCCCCeEEEE
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKV--NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~  179 (237)
                                ...-|+|+......  ....+++.+.+.++++.+|+.
T Consensus        82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence                      15568888765432  235667778777777765543

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=87.78  E-value=8.1  Score=33.32  Aligned_cols=103  Identities=21%  Similarity=0.349  Sum_probs=58.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~  142 (237)
                      +...++.+||-+|+|. |..+..+|+..+ ...|++++.+++..+.+++    .|....+.....  +..+.+..+.   
T Consensus       179 ~~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---  250 (365)
T cd05279         179 AKVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---  250 (365)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh---
Confidence            3455677888887632 334445666653 2358888888877766643    354221222222  2222222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCC-CCeEEEEeC
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLK-VGGIAVYDN  181 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~~  181 (237)
                        .+.+|+|+ +...  ....+....+.|+ ++|.++.-.
T Consensus       251 --~~~~d~vi-d~~g--~~~~~~~~~~~l~~~~G~~v~~g  285 (365)
T cd05279         251 --DGGVDYAF-EVIG--SADTLKQALDATRLGGGTSVVVG  285 (365)
T ss_pred             --CCCCcEEE-ECCC--CHHHHHHHHHHhccCCCEEEEEe
Confidence              25689887 3321  1356677788899 999888643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=87.75  E-value=5.5  Score=33.75  Aligned_cols=98  Identities=13%  Similarity=0.082  Sum_probs=56.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....+.+||-.|+|. |..+..+++..  +.+|+.++.+++..+.+++    .|..   .++...-.+....+..    .
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~----~  226 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAH---HYIDTSKEDVAEALQE----L  226 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCc---EEecCCCccHHHHHHh----c
Confidence            455677899888532 33445566664  4589999988777666643    3532   1222211122222211    1


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+|+++ +..  .....++..++.|+++|.++.-
T Consensus       227 ~~~d~vi-~~~--g~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         227 GGAKLIL-ATA--PNAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             CCCCEEE-ECC--CchHHHHHHHHHcccCCEEEEE
Confidence            3588887 321  1235677788999999988753

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK08655 prephenate dehydrogenase; Provisional

Probab=87.70  E-value=2.7  Score=37.63  Aligned_cols=85  Identities=16%  Similarity=0.123  Sum_probs=44.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      +|.-|| |.|..+..++..+.. +.+|++++.+++....   ...+.|.    .+ ..+..+.          ....|+|
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~~-~~~~~e~----------~~~aDvV   62 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----EY-ANDNIDA----------AKDADIV   62 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----ee-ccCHHHH----------hccCCEE
Confidence            566776 335555555544422 4589999988765422   1222232    11 1121111          1445777


Q ss_pred             EEeCCCcCcHHHHHHHHccCCCCeE
Q 026547          152 FVDADKVNYWNYHERLMKLLKVGGI  176 (237)
Q Consensus       152 ~id~~~~~~~~~~~~~~~~L~~gG~  176 (237)
                      ++..+.....+.++.+.+.+++|.+
T Consensus        63 Ilavp~~~~~~vl~~l~~~l~~~~i   87 (437)
T PRK08655         63 IISVPINVTEDVIKEVAPHVKEGSL   87 (437)
T ss_pred             EEecCHHHHHHHHHHHHhhCCCCCE
Confidence            7766555555666666666666553

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.67  E-value=6.5  Score=33.20  Aligned_cols=95  Identities=23%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhc-CC--C--------CcEEEEeccchHHHHHH
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKA-GV--D--------HKINFIESEALSVLDQL  138 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~-~~--~--------~~v~~~~~d~~~~~~~~  138 (237)
                      -++|.-||+|.=..+  ++..+. .+.+|+.+|.+++.++.+++.+... +.  .        .++++ ..+..+.    
T Consensus         4 ~~~I~vIGaG~mG~~--iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----   76 (311)
T PRK06130          4 IQNLAIIGAGTMGSG--IAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA----   76 (311)
T ss_pred             ccEEEEECCCHHHHH--HHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----
Confidence            357888888653332  222221 2458999999998888777643211 11  0        11111 1122111    


Q ss_pred             hhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCCeEEE
Q 026547          139 LKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~gG~lv  178 (237)
                            ....|+|++......  ...++..+.+.++++.+++
T Consensus        77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence                  156789987764432  4567777777666655443

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.62  E-value=13  Score=30.20  Aligned_cols=82  Identities=7%  Similarity=0.010  Sum_probs=44.5

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      .++.+|-.|.++ +..+..+++.+. .+.+|+.++.+....+..++..++.+ ..++.++..|..+.      .....++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            467899999762 445555554442 35688888654322222233323222 23577777776542      2222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++..+
T Consensus        85 ---~g~ld~lv~na   95 (257)
T PRK08594         85 ---VGVIHGVAHCI   95 (257)
T ss_pred             ---CCCccEEEECc
Confidence               37799887553

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=87.61  E-value=7.4  Score=33.23  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=52.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEecc
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE--DGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESE  130 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~--~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d  130 (237)
                      .+||-||.  |..++.+++.+.-  -.++..||++.                   ...+.|.+++.+.=..-.|.++..+
T Consensus        41 ~kiLviGA--GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~k  118 (422)
T KOG2015|consen   41 CKILVIGA--GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQK  118 (422)
T ss_pred             CcEEEEcc--CcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecc
Confidence            67999987  5666766654421  22555555432                   2234555554432222346778888


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      +.+.-..+      -..||+|++..+.-....++..++
T Consensus       119 Iqd~~~~F------Yk~F~~iicGLDsIeaRRwIN~mL  150 (422)
T KOG2015|consen  119 IQDKPISF------YKRFDLIICGLDSIEARRWINGML  150 (422)
T ss_pred             hhcCCHHH------HhhhceEEecccchhHHHHHHHHH
Confidence            88876665      378999997655433444555444

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=87.59  E-value=6.8  Score=32.77  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=56.9

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ....++.++|-.|.+  .|..+..++...  +.+++.++.+++..+.++.    .+....+.....+..+.+....    
T Consensus       162 ~~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----  231 (342)
T cd08266         162 ARLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----  231 (342)
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----
Confidence            334567789988875  455556666654  5689999888776655433    3432112111112222222221    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ....+|+++.....    ..++.+++.++++|.++.-
T Consensus       232 ~~~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         232 GKRGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             CCCCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence            12468988754332    3456677888999987754

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=87.59  E-value=0.47  Score=38.00  Aligned_cols=101  Identities=7%  Similarity=0.004  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      -...+.+..+ ...++...+|+--|.|..+..+.+..+ +.+++++|.+|-+.+.|+-...+. ..+++..+.++..+.-
T Consensus        30 Vm~devl~~l-spv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~  106 (303)
T KOG2782|consen   30 VMLDEVLDIL-SPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIK  106 (303)
T ss_pred             eehhhHHHHc-CCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHH
Confidence            3344444443 344678999999999999999998877 789999999998877777655321 1122333334433322


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVN  159 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~  159 (237)
                      .-+++.+-.+.++|-|++|...+.
T Consensus       107 ~l~~~~gl~~~~vDGiLmDlGcSS  130 (303)
T KOG2782|consen  107 SLIADTGLLDVGVDGILMDLGCSS  130 (303)
T ss_pred             HHHHHhCCCcCCcceEEeecCccc
Confidence            222222333578999998865544

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=87.59  E-value=1.3  Score=33.95  Aligned_cols=45  Identities=16%  Similarity=0.042  Sum_probs=31.9

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLP  113 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  113 (237)
                      ...+|.+|+-+|.|. |..++.++..+  +.+++.+|..+...+..+.
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES   61 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence            345788999999986 55677788876  4799999998877665544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=87.52  E-value=5.4  Score=34.34  Aligned_cols=103  Identities=22%  Similarity=0.290  Sum_probs=58.1

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ....++.+||-.|+| .|..+..+++..+ ..+|++++.+++..+.++    ..|....+.....+..+.+..+.    .
T Consensus       178 ~~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~----~~g~~~vv~~~~~~~~~~l~~~~----~  248 (363)
T cd08279         178 ARVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELAR----RFGATHTVNASEDDAVEAVRDLT----D  248 (363)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHH----HhCCeEEeCCCCccHHHHHHHHc----C
Confidence            445567788888764 3556667777653 224899988877665553    33532111111112222232221    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+|+++-.. ..  ...++..++.|+++|.++.-
T Consensus       249 ~~~vd~vld~~-~~--~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         249 GRGADYAFEAV-GR--AATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             CCCCCEEEEcC-CC--hHHHHHHHHHhhcCCeEEEE
Confidence            25699876322 21  24567788899999988753

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.44  E-value=5.5  Score=33.53  Aligned_cols=80  Identities=19%  Similarity=0.216  Sum_probs=56.0

Q ss_pred             CCCEEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhc-CC
Q 026547           70 NAKKTIEIGVFTGY---SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKD-SE  143 (237)
Q Consensus        70 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~-~~  143 (237)
                      .++.||-.|.|.|.   .++.+|+.   ++++...|++++......+.+++.|   ++....+|..+  .+...+++ ..
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence            56789999999987   35556653   6689999999999988888888776   57778877654  22222111 11


Q ss_pred             CCCceeEEEEeC
Q 026547          144 NEGSFDYAFVDA  155 (237)
Q Consensus       144 ~~~~~D~i~id~  155 (237)
                      ..+..|+++-++
T Consensus       111 e~G~V~ILVNNA  122 (300)
T KOG1201|consen  111 EVGDVDILVNNA  122 (300)
T ss_pred             hcCCceEEEecc
Confidence            257899988664

>PRK08507 prephenate dehydrogenase; Validated

Probab=87.40  E-value=2.8  Score=34.76  Aligned_cols=84  Identities=18%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCCC---CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           73 KTIEIGVFTGYSLLLTALTIPED---GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +|.-||+  |..+..++..+...   .+|+++|.+++..+.++    +.|...   . ..+.    ...       ...|
T Consensus         2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~---~-~~~~----~~~-------~~aD   60 (275)
T PRK08507          2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVD---E-IVSF----EEL-------KKCD   60 (275)
T ss_pred             EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCc---c-cCCH----HHH-------hcCC
Confidence            4666776  55555555444322   37999999988766543    234311   1 1121    111       2279


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      +||+........+.++.+.+ ++++.+++
T Consensus        61 ~Vilavp~~~~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         61 VIFLAIPVDAIIEILPKLLD-IKENTTII   88 (275)
T ss_pred             EEEEeCcHHHHHHHHHHHhc-cCCCCEEE
Confidence            99988877777788888877 77766444

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=87.32  E-value=2.6  Score=38.88  Aligned_cols=93  Identities=9%  Similarity=-0.011  Sum_probs=57.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~  148 (237)
                      .+++-+|+  |..+..+++.+.+ +..++.+|.+++..+.+++    .|    ...+.||+.+.  +.+.     +-++.
T Consensus       418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a-----~i~~a  482 (558)
T PRK10669        418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLA-----HLDCA  482 (558)
T ss_pred             CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhc-----Ccccc
Confidence            56777777  6666677766542 4589999999998877764    23    67899998763  2222     24688


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |.+++...........-.+.+...|+..++.
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence            8777654322212222223344566665554

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=87.24  E-value=9.9  Score=33.23  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=45.4

Q ss_pred             CCCEEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547           70 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ...+||-+|||. |...+ ++++ .+ -++++.+|.+.                   ...+.+++.+++.+..-+++.+.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~-~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~  117 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLAS-AG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR  117 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence            566899999974 33333 3333 23 46899999752                   33456667776665443455555


Q ss_pred             ccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          129 SEALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       129 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      ..... ....+      ...+|+|+...+
T Consensus       118 ~~i~~~~~~~~------~~~~DlVid~~D  140 (370)
T PRK05600        118 ERLTAENAVEL------LNGVDLVLDGSD  140 (370)
T ss_pred             eecCHHHHHHH------HhCCCEEEECCC
Confidence            44322 22222      267999865443

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.14  E-value=13  Score=31.80  Aligned_cols=81  Identities=14%  Similarity=0.071  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--H----HHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--D----QLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~~  142 (237)
                      ..+.||-.|+. |..+..+++.+ ..+.+|+.++.+++.++...+.++..+  .++.++.+|..+.-  .    ...+. 
T Consensus         7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~-   82 (334)
T PRK07109          7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE-   82 (334)
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH-
Confidence            45688888864 44455554444 236799999998887777766666555  35777888864421  1    11111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|.++....
T Consensus        83 --~g~iD~lInnAg   94 (334)
T PRK07109         83 --LGPIDTWVNNAM   94 (334)
T ss_pred             --CCCCCEEEECCC
Confidence              357899886643

>PRK07063 short chain dehydrogenase; Provisional

Probab=87.12  E-value=6.9  Score=31.72  Aligned_cols=83  Identities=12%  Similarity=0.093  Sum_probs=51.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      +++++|-.|+.. ..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+.      +....+. 
T Consensus         6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-   83 (260)
T PRK07063          6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA-   83 (260)
T ss_pred             CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            467899999754 44555554442 36799999998887776666665532234677888886542      2222111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|.++..+.
T Consensus        84 --~g~id~li~~ag   95 (260)
T PRK07063         84 --FGPLDVLVNNAG   95 (260)
T ss_pred             --hCCCcEEEECCC
Confidence              357899886543

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=87.12  E-value=8.7  Score=31.62  Aligned_cols=98  Identities=14%  Similarity=0.155  Sum_probs=59.1

Q ss_pred             HHhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc---chHHHHHHh
Q 026547           65 LLKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE---ALSVLDQLL  139 (237)
Q Consensus        65 l~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~  139 (237)
                      .....++.+||-.|+  +.|..+..+++..  +.+|++++.+++..+.+++    .|..   .++..+   ..+.+..+.
T Consensus       131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~  201 (320)
T cd05286         131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT  201 (320)
T ss_pred             hcCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc
Confidence            344556788999984  4566677777775  5689999888776665533    3532   222222   222222221


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                          ....+|+++-... .   ......++.++++|.++.
T Consensus       202 ----~~~~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         202 ----GGRGVDVVYDGVG-K---DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             ----CCCCeeEEEECCC-c---HhHHHHHHhhccCcEEEE
Confidence                1256999874322 1   355667788999998874

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=87.11  E-value=4.4  Score=34.20  Aligned_cols=79  Identities=13%  Similarity=0.133  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  146 (237)
                      ++++||-.| |+|+.+.++++.+. .+.+|+++..++.............+...+++++.+|..+.  +...      ..
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~------~~   76 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA------ID   76 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH------Hc
Confidence            357889888 67888888776653 35688877766654433322222223234688899987663  2332      24


Q ss_pred             ceeEEEEeC
Q 026547          147 SFDYAFVDA  155 (237)
Q Consensus       147 ~~D~i~id~  155 (237)
                      .+|.|+..+
T Consensus        77 ~~d~vih~A   85 (325)
T PLN02989         77 GCETVFHTA   85 (325)
T ss_pred             CCCEEEEeC
Confidence            578887654

>PRK05854 short chain dehydrogenase; Provisional

Probab=87.08  E-value=7.3  Score=32.90  Aligned_cols=82  Identities=20%  Similarity=0.190  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .++.+|-.|+..| .+..+++.+. .+.+|+.+..+++..+.+.+.+.......++.++.+|..+.      ...+.+. 
T Consensus        13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~-   90 (313)
T PRK05854         13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE-   90 (313)
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh-
Confidence            4678998887654 4455554442 36799999988877766666554432223578888886542      1222211 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+++|+++.++
T Consensus        91 --~~~iD~li~nA  101 (313)
T PRK05854         91 --GRPIHLLINNA  101 (313)
T ss_pred             --CCCccEEEECC
Confidence              36789988664

>PRK06949 short chain dehydrogenase; Provisional

Probab=87.07  E-value=8.5  Score=31.03  Aligned_cols=81  Identities=10%  Similarity=0.085  Sum_probs=51.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .+++||-+| |+|..+..+++.+. .+.+|+.++.+++.++.....++..+  .++.++.+|..+.      +....+. 
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   83 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETE-   83 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh-
Confidence            467889888 55666666665553 35689999999887776666655443  3577888776432      2222111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|.++....
T Consensus        84 --~~~~d~li~~ag   95 (258)
T PRK06949         84 --AGTIDILVNNSG   95 (258)
T ss_pred             --cCCCCEEEECCC
Confidence              357898876543

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.70  E-value=2.6  Score=35.90  Aligned_cols=101  Identities=20%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ..++++|--+|.| -|..+..+|+++  +.+|++||-+...-+.   .++..|-+..+.+. . -.+.+..+      .+
T Consensus       179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkee---a~~~LGAd~fv~~~-~-d~d~~~~~------~~  245 (360)
T KOG0023|consen  179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEE---AIKSLGADVFVDST-E-DPDIMKAI------MK  245 (360)
T ss_pred             CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHH---HHHhcCcceeEEec-C-CHHHHHHH------HH
Confidence            4466777666653 678889999998  4799999988754443   44445643222222 1 22444444      24


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..|.++... ..-....++.+.++||++|.+|+-.+
T Consensus       246 ~~dg~~~~v-~~~a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  246 TTDGGIDTV-SNLAEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             hhcCcceee-eeccccchHHHHHHhhcCCEEEEEeC
Confidence            556553221 11123446777899999999988554

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=86.69  E-value=18  Score=30.80  Aligned_cols=77  Identities=14%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE-IGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ..+.+|.-||+|. |....+.+...+-..++..+|++++.++ .+...........++.+..++..+    +       .
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~----~-------~   72 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD----C-------K   72 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH----h-------C
Confidence            3567999999976 5544444333332348999999887653 333333322222345555444322    2       6


Q ss_pred             ceeEEEEeCC
Q 026547          147 SFDYAFVDAD  156 (237)
Q Consensus       147 ~~D~i~id~~  156 (237)
                      .-|+|++.+.
T Consensus        73 ~adivIitag   82 (315)
T PRK00066         73 DADLVVITAG   82 (315)
T ss_pred             CCCEEEEecC
Confidence            7789988654

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=86.67  E-value=9.7  Score=32.62  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch---HHHHHHhhcCCC
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL---SVLDQLLKDSEN  144 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~~  144 (237)
                      ++.+||-.|+|. |..+..+|+..  +. +|++++.+++..+.++    +.|...-+.....+..   ..+..+.    .
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~  246 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----G  246 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----C
Confidence            567888887532 22345566665  34 8999998877665543    3454221221111111   1122221    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+|+++-....   ...++..++.|+++|.++.-
T Consensus       247 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         247 GRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             CCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence            2569988743221   34567778999999998864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=86.56  E-value=7.2  Score=31.50  Aligned_cols=84  Identities=8%  Similarity=0.102  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhc-CCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKD-SENE  145 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~  145 (237)
                      .+++||-.|. +|..+..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+.++ ....
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4678999995 5666666666553 36799999998877766666665544  3477787776542  1111110 0013


Q ss_pred             CceeEEEEeCC
Q 026547          146 GSFDYAFVDAD  156 (237)
Q Consensus       146 ~~~D~i~id~~  156 (237)
                      +++|.++..+.
T Consensus        86 ~~~d~li~~ag   96 (255)
T PRK07523         86 GPIDILVNNAG   96 (255)
T ss_pred             CCCCEEEECCC
Confidence            57898887643

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=86.43  E-value=7.1  Score=31.62  Aligned_cols=80  Identities=15%  Similarity=0.148  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--H----HHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--L----DQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~----~~~~~~~  142 (237)
                      +++++|-.| |+|..+..+++.+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +    ....+. 
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~-   86 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER-   86 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            467899999 46666676666553 35689999998877776666655433  3577888887642  2    222111 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+++|.|+..+
T Consensus        87 --~~~id~vi~~a   97 (259)
T PRK08213         87 --FGHVDILVNNA   97 (259)
T ss_pred             --hCCCCEEEECC
Confidence              25789987654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=86.38  E-value=11  Score=27.72  Aligned_cols=77  Identities=14%  Similarity=0.163  Sum_probs=41.5

Q ss_pred             EEEEEccc-ccHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           73 KTIEIGVF-TGYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        73 ~vLeiG~G-~G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      +|+-+||| .|.... .|++. + -++++.+|.+.                   ...+.+++.+++.+..-+++.+....
T Consensus         1 ~VliiG~GglGs~ia~~L~~~-G-v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~   78 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS-G-VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI   78 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC-C-CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence            47889996 333222 23332 2 35899998652                   22445566666665433455555443


Q ss_pred             hHHH-HHHhhcCCCCCceeEEEEeCCC
Q 026547          132 LSVL-DQLLKDSENEGSFDYAFVDADK  157 (237)
Q Consensus       132 ~~~~-~~~~~~~~~~~~~D~i~id~~~  157 (237)
                      .... ..+      ...+|+|+...+.
T Consensus        79 ~~~~~~~~------~~~~diVi~~~d~   99 (143)
T cd01483          79 SEDNLDDF------LDGVDLVIDAIDN   99 (143)
T ss_pred             ChhhHHHH------hcCCCEEEECCCC
Confidence            3321 122      3789999765543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=86.35  E-value=1.9  Score=36.44  Aligned_cols=109  Identities=16%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             CEEEEEcccccHHHHHHHhhC----C---------------CCCEEEEEeCCc--hHHHHHHHHHHhc----------CC
Q 026547           72 KKTIEIGVFTGYSLLLTALTI----P---------------EDGQIMAIDVNR--ETYEIGLPVIKKA----------GV  120 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~----~---------------~~~~v~~vD~~~--~~~~~a~~~~~~~----------~~  120 (237)
                      .+||-||-|.|.-...+|..+    .               ....|+.||+.+  ..+......+...          +.
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            599999999998777666555    0               124899999865  3333333333322          00


Q ss_pred             ----C--CcEEEEeccchHHHHH-HhhcCCCCCceeEEEE--------eCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          121 ----D--HKINFIESEALSVLDQ-LLKDSENEGSFDYAFV--------DADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       121 ----~--~~v~~~~~d~~~~~~~-~~~~~~~~~~~D~i~i--------d~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                          .  =+++|.+.|++..-.. +..- ......++|-+        .........|+..+-..+++|.++++.|
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD  242 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD  242 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence                1  1478889988764332 1000 01124566621        1234456788999999999999988865

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=86.32  E-value=7  Score=34.15  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=45.8

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCC-------------------chHHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVN-------------------RETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~-------------------~~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ...+|+-+|||. |......+...+ -++++.+|.+                   ....+.+.+.+++.+..-+++.+..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            566899999973 443333333333 4689999987                   3456666777766653333444443


Q ss_pred             cchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          130 EALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       130 d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      .... .+..+      ...+|+|+...+
T Consensus       213 ~~~~~~~~~~------~~~~D~Vv~~~d  234 (376)
T PRK08762        213 RVTSDNVEAL------LQDVDVVVDGAD  234 (376)
T ss_pred             cCChHHHHHH------HhCCCEEEECCC
Confidence            3322 12222      257998875443

>PRK07680 late competence protein ComER; Validated

Probab=86.29  E-value=3.8  Score=33.98  Aligned_cols=87  Identities=14%  Similarity=0.045  Sum_probs=49.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           73 KTIEIGVFTGYSLLLTALTIPED-----GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      +|.=||+  |..+..++..+...     ..|+.++.+++..+...+.   .+   .+.+ ..+..+.+          ..
T Consensus         2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~---~~---g~~~-~~~~~~~~----------~~   62 (273)
T PRK07680          2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER---YP---GIHV-AKTIEEVI----------SQ   62 (273)
T ss_pred             EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH---cC---CeEE-ECCHHHHH----------Hh
Confidence            4666787  45444444433212     3688999887665443332   11   1332 22333322          45


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      .|+||+-.......+.++.+.+.++++.+++
T Consensus        63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii   93 (273)
T PRK07680         63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV   93 (273)
T ss_pred             CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence            6899887766666777777777787766443

>PRK07326 short chain dehydrogenase; Provisional

Probab=86.27  E-value=6.4  Score=31.29  Aligned_cols=78  Identities=12%  Similarity=0.107  Sum_probs=48.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDSE  143 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~~  143 (237)
                      .+.||-+|. +|..+..+++.+. .+.+|++++.++.......+.+...   .+++++.+|..+.      +....+.  
T Consensus         6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~--   79 (237)
T PRK07326          6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAA--   79 (237)
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHH--
Confidence            578898884 6666666665542 3568999998887666555544432   3578888876542      1121111  


Q ss_pred             CCCceeEEEEeC
Q 026547          144 NEGSFDYAFVDA  155 (237)
Q Consensus       144 ~~~~~D~i~id~  155 (237)
                       .+.+|.|+...
T Consensus        80 -~~~~d~vi~~a   90 (237)
T PRK07326         80 -FGGLDVLIANA   90 (237)
T ss_pred             -cCCCCEEEECC
Confidence             24789888654

>PRK06914 short chain dehydrogenase; Provisional

Probab=86.16  E-value=7.7  Score=31.83  Aligned_cols=81  Identities=22%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH-----HHhhcCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD-----QLLKDSEN  144 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~~~  144 (237)
                      .+.+|-+|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...+++++.+|..+.-.     ...+.   
T Consensus         3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~---   78 (280)
T PRK06914          3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE---   78 (280)
T ss_pred             CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh---
Confidence            457888885 444555555443 23678999998887776665555555544568888888765321     11111   


Q ss_pred             CCceeEEEEeC
Q 026547          145 EGSFDYAFVDA  155 (237)
Q Consensus       145 ~~~~D~i~id~  155 (237)
                      .+++|.|+..+
T Consensus        79 ~~~id~vv~~a   89 (280)
T PRK06914         79 IGRIDLLVNNA   89 (280)
T ss_pred             cCCeeEEEECC
Confidence            35789887654

>PRK05599 hypothetical protein; Provisional

Probab=86.13  E-value=8.1  Score=31.23  Aligned_cols=79  Identities=11%  Similarity=0.085  Sum_probs=50.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcCCCCC
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDSENEG  146 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~~~~  146 (237)
                      .+|-.|++.| .+..+++.+.++.+|+.++.+++.++...+.++..+. +++.++.+|..+      .+....+.   .+
T Consensus         2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~---~g   76 (246)
T PRK05599          2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQEL---AG   76 (246)
T ss_pred             eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHh---cC
Confidence            5777887655 4566666555578999999888877777666665542 346777777654      22222221   36


Q ss_pred             ceeEEEEeCC
Q 026547          147 SFDYAFVDAD  156 (237)
Q Consensus       147 ~~D~i~id~~  156 (237)
                      ++|+++....
T Consensus        77 ~id~lv~nag   86 (246)
T PRK05599         77 EISLAVVAFG   86 (246)
T ss_pred             CCCEEEEecC
Confidence            7899886543

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=85.99  E-value=14  Score=31.75  Aligned_cols=97  Identities=19%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++.+||-.|+| .|..++.+|+..  +.+++.++.+++....+.+   ..|...  .+...+. +.+...      ...
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~------~~~  244 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA------ADS  244 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh------cCC
Confidence            356788887753 244556677765  4578888877765443332   345421  1111111 222222      235


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|++|-...   ....++.+.+.|+++|.++.-..
T Consensus       245 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        245 LDYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             CcEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence            898864322   12456777889999998887544

>PRK10083 putative oxidoreductase; Provisional

Probab=85.99  E-value=8.9  Score=32.42  Aligned_cols=101  Identities=14%  Similarity=0.040  Sum_probs=53.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhh-CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALT-IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ....++.+||-.|+|. |..++.+++. ++ ...+++++.+++..+.+++    .|.+.-+.....+.   ...+...  
T Consensus       156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~---~~~~~~~--  225 (339)
T PRK10083        156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPL---GEALEEK--  225 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccH---HHHHhcC--
Confidence            3455677898888532 2233445554 23 3368889988877766554    35421122211122   2222111  


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       ...+|+++ |....  ...+...++.|+++|.++.-
T Consensus       226 -g~~~d~vi-d~~g~--~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        226 -GIKPTLII-DAACH--PSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             -CCCCCEEE-ECCCC--HHHHHHHHHHhhcCCEEEEE
Confidence             12345654 43221  34567778999999998864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=85.98  E-value=3.6  Score=38.38  Aligned_cols=92  Identities=9%  Similarity=0.008  Sum_probs=56.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~  148 (237)
                      .+|+-+|+  |..+..+++.+. .+..++.+|.+++.++.+++    .|    ..++.||+.+  .+...     +-++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~A  465 (601)
T PRK03659        401 PQVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLELLRAA-----GAEKA  465 (601)
T ss_pred             CCEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHHHHHhc-----CCccC
Confidence            46777776  666666665543 24689999999998887765    23    5678899866  33332     24678


Q ss_pred             eEEEEeCCCcCc-HHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADKVNY-WNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~  179 (237)
                      |.+++..+.... ...... .+.+.|...+++
T Consensus       466 ~~vv~~~~d~~~n~~i~~~-~r~~~p~~~Iia  496 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVEL-CQQHFPHLHILA  496 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHH-HHHHCCCCeEEE
Confidence            887765443222 222233 355667666665

>PRK05867 short chain dehydrogenase; Provisional

Probab=85.98  E-value=6.9  Score=31.63  Aligned_cols=80  Identities=23%  Similarity=0.216  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      +++.+|-.|++.| .+..+++.+. .+.+|+.++.+++.++...+.++..+  .++.++.+|..+.      +....+. 
T Consensus         8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   83 (253)
T PRK05867          8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE-   83 (253)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            5678999997554 4444444432 36799999998877776666665544  3577777776542      1222111 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+++|.++...
T Consensus        84 --~g~id~lv~~a   94 (253)
T PRK05867         84 --LGGIDIAVCNA   94 (253)
T ss_pred             --hCCCCEEEECC
Confidence              36789988654

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=85.80  E-value=4  Score=32.18  Aligned_cols=95  Identities=12%  Similarity=0.118  Sum_probs=55.5

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +........+++||-+|+.-  .+.+.|..+.+..+|+.+|++|.+-..         +.+.|.|..+  ..        
T Consensus        36 i~~~~~~~E~~~vli~G~Yl--tG~~~a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~~--------   94 (254)
T COG4017          36 IRDFLEGEEFKEVLIFGVYL--TGNYTAQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL--LK--------   94 (254)
T ss_pred             hhhhhcccCcceEEEEEeee--hhHHHHHHhcccceEEEecCCHHHHhc---------CCCCccHhhh--cC--------
Confidence            33333455788999999863  334555555567899999999865321         1234555443  11        


Q ss_pred             CCCCCceeEEEEeCC-CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          142 SENEGSFDYAFVDAD-KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       142 ~~~~~~~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       +..+.+|+|+--.. ..-.++++    +.+.| +++++.|..
T Consensus        95 -~~~G~~DlivDlTGlGG~~Pe~L----~~fnp-~vfiVEdP~  131 (254)
T COG4017          95 -FIRGEVDLIVDLTGLGGIEPEFL----AKFNP-KVFIVEDPK  131 (254)
T ss_pred             -CCCCceeEEEeccccCCCCHHHH----hccCC-ceEEEECCC
Confidence             22588999963322 12234444    34456 667777654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=85.78  E-value=8.3  Score=31.13  Aligned_cols=81  Identities=21%  Similarity=0.185  Sum_probs=51.9

Q ss_pred             EEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCchHHHHHHH-HHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCce
Q 026547           73 KTIEIGVFTGYSLLLTALTIPED-GQIMAIDVNRETYEIGLP-VIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSF  148 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~  148 (237)
                      +++-+||  |..+..+|+.+... -.|+.+|.+++.++.... .+       ..+.+++|+.+  .+...     +...+
T Consensus         2 ~iiIiG~--G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~a-----gi~~a   67 (225)
T COG0569           2 KIIIIGA--GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEA-----GIDDA   67 (225)
T ss_pred             EEEEECC--cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhc-----CCCcC
Confidence            5777888  56666666665444 589999999988765322 11       26788888765  44443     35789


Q ss_pred             eEEEEeCCCcCcHHHHHHH
Q 026547          149 DYAFVDADKVNYWNYHERL  167 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~  167 (237)
                      |.+++..........+-.+
T Consensus        68 D~vva~t~~d~~N~i~~~l   86 (225)
T COG0569          68 DAVVAATGNDEVNSVLALL   86 (225)
T ss_pred             CEEEEeeCCCHHHHHHHHH
Confidence            9998776554433333333

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=85.69  E-value=12  Score=28.68  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           56 PDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        56 ~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+.+.|...+..  .+..+|+=|||=+-+..+.-  ......+++.+|.+.....        .+-. ...+.-.+...
T Consensus         9 ~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~--------~~~~-~F~fyD~~~p~   77 (162)
T PF10237_consen    9 DETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQ--------FGGD-EFVFYDYNEPE   77 (162)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHh--------cCCc-ceEECCCCChh
Confidence            4444555444333  34579999999555543322  1223678999999975542        2211 12333333333


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHH----HHHHHccCCCCeEEEEe
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNY----HERLMKLLKVGGIAVYD  180 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~----~~~~~~~L~~gG~lv~~  180 (237)
                      .++...     .++||+|++|.+- ...+.    .+.+..++++++-|++.
T Consensus        78 ~~~~~l-----~~~~d~vv~DPPF-l~~ec~~k~a~ti~~L~k~~~kii~~  122 (162)
T PF10237_consen   78 ELPEEL-----KGKFDVVVIDPPF-LSEECLTKTAETIRLLLKPGGKIILC  122 (162)
T ss_pred             hhhhhc-----CCCceEEEECCCC-CCHHHHHHHHHHHHHHhCccceEEEe
Confidence            333221     4799999999764 22333    34454566777777764

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=85.64  E-value=12  Score=30.61  Aligned_cols=80  Identities=15%  Similarity=0.153  Sum_probs=45.0

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ...+|+-+|||. |......+...+ -++++.+|.+.                   ..++.+++.+++.+..-+++.+..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~  109 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA  109 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence            567999999963 443333222223 46888888533                   234555666666654444555554


Q ss_pred             cchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          130 EALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       130 d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      .... ....+      ...||+|+...+
T Consensus       110 ~i~~~~~~~~------~~~~DiVi~~~D  131 (245)
T PRK05690        110 RLDDDELAAL------IAGHDLVLDCTD  131 (245)
T ss_pred             cCCHHHHHHH------HhcCCEEEecCC
Confidence            4322 22222      367999876544

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=85.54  E-value=4.6  Score=34.46  Aligned_cols=79  Identities=22%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCc-hHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNR-ETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEG  146 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  146 (237)
                      +.+||-.| |.|+.+.+-+.++ ..+-.|+++|.-- ..+...++...-.+-...|.|..+|..|  .++.+.+    ..
T Consensus         2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~----~~   76 (343)
T KOG1371|consen    2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFS----EV   76 (343)
T ss_pred             CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHh----hc
Confidence            56888888 7788655433333 2367899999533 2222222222222323579999999877  4455533    36


Q ss_pred             ceeEEEEe
Q 026547          147 SFDYAFVD  154 (237)
Q Consensus       147 ~~D~i~id  154 (237)
                      +||.|+..
T Consensus        77 ~fd~V~Hf   84 (343)
T KOG1371|consen   77 KFDAVMHF   84 (343)
T ss_pred             CCceEEee
Confidence            79988754

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=85.30  E-value=4  Score=28.06  Aligned_cols=76  Identities=22%  Similarity=0.185  Sum_probs=39.8

Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCC-----CCccccchHHHHHHHHHHhhcCCCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQ-----VPDHLRGGRQATLDLNRSLADDPRI  219 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~  219 (237)
                      ...||++++|+...-.++.+..+...++-||++++--..+......+...     .+.+..-.....+.|.+.+.+++++
T Consensus         9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~~~i   88 (92)
T PF08351_consen    9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYTDVTPRFIRRFIRSLQSDPGI   88 (92)
T ss_dssp             T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS-B--HHHHHHHHHHHCCSTTS
T ss_pred             CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCCcccHHHHHHHHHHHHHCcCC
Confidence            36799999999877788999999999999999987433321111111000     1111122344567788888877765


Q ss_pred             e
Q 026547          220 Q  220 (237)
Q Consensus       220 ~  220 (237)
                      -
T Consensus        89 ~   89 (92)
T PF08351_consen   89 I   89 (92)
T ss_dssp             -
T ss_pred             c
Confidence            3

; PDB: 2ZPA_B.

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=85.30  E-value=9.1  Score=32.48  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=55.8

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++.+||-.|+|. |..+..+++..+ ..+|++++.+++..+.++    +.|.+.-+.....+..+.+..+.    ....+
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~----~lg~~~~~~~~~~~~~~~~~~~~----~~~~~  233 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELAR----KMGATRAVNVAKEDLRDVMAELG----MTEGF  233 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HhCCcEEecCccccHHHHHHHhc----CCCCC
Confidence            566777777654 556667777654 236888877776655443    33532111111122223333221    13568


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |+||-...   ....+..+.+.|+++|.++.-.
T Consensus       234 d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        234 DVGLEMSG---APSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            98864222   1345677778999999887753

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=85.28  E-value=2.8  Score=33.98  Aligned_cols=75  Identities=16%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             cccHHHH--HHHhhC-CCCCEEEEEeCCch--HHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547           80 FTGYSLL--LTALTI-PEDGQIMAIDVNRE--TYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVD  154 (237)
Q Consensus        80 G~G~~~~--~la~~~-~~~~~v~~vD~~~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  154 (237)
                      |.|-.|.  .++..+ ..+.+|..||-+|.  ..++.+...+...+++++.+...+-...+....+. .....||+|++|
T Consensus        12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~VlvD   90 (231)
T PF07015_consen   12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLVD   90 (231)
T ss_pred             CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEEe
Confidence            4455444  333333 23779999998774  44443333233344556666665433333332111 012459999998


Q ss_pred             C
Q 026547          155 A  155 (237)
Q Consensus       155 ~  155 (237)
                      .
T Consensus        91 l   91 (231)
T PF07015_consen   91 L   91 (231)
T ss_pred             C
Confidence            4

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=85.27  E-value=9.3  Score=30.90  Aligned_cols=81  Identities=15%  Similarity=0.007  Sum_probs=48.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDSE  143 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~~  143 (237)
                      +++||-.|. +|..+..+++.+. .+.+|+.++.++...+...+.+....-..++.++.+|..+.      +....+.  
T Consensus         2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~--   78 (259)
T PRK12384          2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEI--   78 (259)
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHH--
Confidence            357888885 5666666665553 35799999988776655444443321113578888886542      2222111  


Q ss_pred             CCCceeEEEEeC
Q 026547          144 NEGSFDYAFVDA  155 (237)
Q Consensus       144 ~~~~~D~i~id~  155 (237)
                       .++.|.|+..+
T Consensus        79 -~~~id~vv~~a   89 (259)
T PRK12384         79 -FGRVDLLVYNA   89 (259)
T ss_pred             -cCCCCEEEECC
Confidence             25789887654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=85.20  E-value=9.9  Score=33.01  Aligned_cols=79  Identities=19%  Similarity=0.029  Sum_probs=46.7

Q ss_pred             CCCEEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547           70 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ...+||-+|||. |...+ .|++ .+ -++++.+|.+.                   ...+.+++.+++.+..-+++.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~-~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAG-AG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHH-cC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            457899999974 33333 3333 23 46888888654                   34566777777776544555554


Q ss_pred             ccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          129 SEALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       129 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      ..... ....+      ...||+|+...+
T Consensus       105 ~~i~~~~~~~~------~~~~DvVvd~~d  127 (355)
T PRK05597        105 RRLTWSNALDE------LRDADVILDGSD  127 (355)
T ss_pred             eecCHHHHHHH------HhCCCEEEECCC
Confidence            44322 11222      267999875543

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=85.18  E-value=10  Score=31.75  Aligned_cols=99  Identities=17%  Similarity=0.185  Sum_probs=57.9

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++.+||-.|.  +.|..+..+++..  +.+|++++.++...+.+++.   .|....+.....+..+.+..+    . 
T Consensus       142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~----~-  211 (329)
T cd05288         142 KPKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEA----A-  211 (329)
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHh----c-
Confidence            3445678888884  4566667777764  56899998888766655442   343211222111222222222    1 


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ...+|+++ +...   ...++..++.|+++|.++.
T Consensus       212 ~~~~d~vi-~~~g---~~~~~~~~~~l~~~G~~v~  242 (329)
T cd05288         212 PDGIDVYF-DNVG---GEILDAALTLLNKGGRIAL  242 (329)
T ss_pred             cCCceEEE-Ecch---HHHHHHHHHhcCCCceEEE
Confidence            25689886 4322   2356777889999998774

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.07  E-value=13  Score=29.59  Aligned_cols=80  Identities=16%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~  142 (237)
                      .++.+|-.|+ +|..+..+++.+ ..+.+|+.++.+++..+.....+...+  .++.++.+|..+..      ....+. 
T Consensus         6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   81 (239)
T PRK07666          6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNE-   81 (239)
T ss_pred             CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHH-
Confidence            3567888885 677777766654 236799999998876655555554433  36888888864421      111111 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+..|.|+...
T Consensus        82 --~~~id~vi~~a   92 (239)
T PRK07666         82 --LGSIDILINNA   92 (239)
T ss_pred             --cCCccEEEEcC
Confidence              25789988654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.06  E-value=3.4  Score=38.75  Aligned_cols=93  Identities=12%  Similarity=0.051  Sum_probs=55.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~  147 (237)
                      ..+|+-+|+  |..+..+++.+.. +..++.+|.+++.++.+++    .|    ..++.||+.+.  +...     +-++
T Consensus       400 ~~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~~L~~a-----gi~~  464 (621)
T PRK03562        400 QPRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAAK  464 (621)
T ss_pred             cCcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHHHHHhc-----CCCc
Confidence            357888888  5555555554432 4589999999999887765    23    56788988663  3322     2467


Q ss_pred             eeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEE
Q 026547          148 FDYAFVDADKVN-YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       148 ~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .|.+++..+... .......+ +.+.|+-.+++
T Consensus       465 A~~vvv~~~d~~~n~~i~~~a-r~~~p~~~iia  496 (621)
T PRK03562        465 AEVLINAIDDPQTSLQLVELV-KEHFPHLQIIA  496 (621)
T ss_pred             CCEEEEEeCCHHHHHHHHHHH-HHhCCCCeEEE
Confidence            888876543322 22222323 44455544443

>PRK05967 cystathionine beta-lyase; Provisional

Probab=84.98  E-value=27  Score=30.86  Aligned_cols=122  Identities=14%  Similarity=0.111  Sum_probs=70.2

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchH-HHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRET-YEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .|....+-..++....+...+-+.+|.+.....+...+.++.+|+..+..-.. ....+..++..|.  +++++..+..+
T Consensus        63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e  140 (395)
T PRK05967         63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA  140 (395)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence            45555555556565656667778887766655554445557788887654322 2334455666665  46665433333


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCc--CcHHHHHHHHccCCCCe-EEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKV--NYWNYHERLMKLLKVGG-IAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG-~lv~~~~~  183 (237)
                      .+....     .+...+|++.....  .....++.+.++.+..| .+++|++.
T Consensus       141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~  188 (395)
T PRK05967        141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW  188 (395)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence            344331     24567898875432  24456677777666644 56667664

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=84.95  E-value=14  Score=30.51  Aligned_cols=101  Identities=16%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ....++..||-.|+  +.|..+..+++..  +.+|+.++.+++..+.+++    .|...-+.....+..+.+....    
T Consensus       135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----  204 (323)
T cd08241         135 ARLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT----  204 (323)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc----
Confidence            34456789999997  3555666677654  5679999988877665543    3432112222222222233221    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ....+|+++-....    ...+.+.+.++++|.++.-
T Consensus       205 ~~~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         205 GGRGVDVVYDPVGG----DVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             CCCCcEEEEECccH----HHHHHHHHhhccCCEEEEE
Confidence            12468988743221    3456677888999988754

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=84.92  E-value=15  Score=32.10  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=22.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCc
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNR  105 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~  105 (237)
                      .+|.-|| |.|..+..++..+.. +..|+++|.++
T Consensus        99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            5788888 346666666665532 45799998764

>PRK08114 cystathionine beta-lyase; Provisional

Probab=84.86  E-value=27  Score=30.83  Aligned_cols=128  Identities=9%  Similarity=0.080  Sum_probs=74.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      -.|....+-..++....+...+-..+|++.....+...+.++.+|++.+. -.......+..+++.|.  ++.++...-.
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~  137 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG  137 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence            45666666677777888888999999877766545444555677777653 23444556666677775  3555543222


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCc--HHHHHHHHccCC---CCeEEEEeCcCCCCcc
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNY--WNYHERLMKLLK---VGGIAVYDNTLWGGTV  188 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~--~~~~~~~~~~L~---~gG~lv~~~~~~~g~~  188 (237)
                      +.+....     .+.-.+|++.......  ...++.+.++.+   +|-.+++||+...+..
T Consensus       138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~  193 (395)
T PRK08114        138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL  193 (395)
T ss_pred             HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence            3333321     2356788887543221  122344444333   3567888888755543

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=84.82  E-value=1.9  Score=36.68  Aligned_cols=93  Identities=18%  Similarity=0.299  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhcCC-C-EE---EEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           58 AGQLMAMLLKLVNA-K-KT---IEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        58 ~~~~l~~l~~~~~~-~-~v---LeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      ...++..|....+. + ++   +|||+  |.+.++.+..... +-...++|++......|+++..+.+++..+.+++.+.
T Consensus        85 YihwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~  162 (419)
T KOG2912|consen   85 YIHWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP  162 (419)
T ss_pred             hHHHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecc
Confidence            34445555543332 2 23   56665  6777776654332 3468999999999999999999999998888888766


Q ss_pred             hHHH-HH-HhhcCCCCCceeEEEEe
Q 026547          132 LSVL-DQ-LLKDSENEGSFDYAFVD  154 (237)
Q Consensus       132 ~~~~-~~-~~~~~~~~~~~D~i~id  154 (237)
                      .+.+ .. +..  .....||+..++
T Consensus       163 ~ktll~d~~~~--~~e~~ydFcMcN  185 (419)
T KOG2912|consen  163 QKTLLMDALKE--ESEIIYDFCMCN  185 (419)
T ss_pred             hhhcchhhhcc--CccceeeEEecC
Confidence            4422 22 211  112447777654

>PRK07774 short chain dehydrogenase; Provisional

Probab=84.75  E-value=9.8  Score=30.51  Aligned_cols=81  Identities=21%  Similarity=0.176  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~  142 (237)
                      ..+++|-+| |+|+.+..+++.+. .+.+|+.++.++.......+.+...+  .++.++..|..+.-      ....++ 
T Consensus         5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~-   80 (250)
T PRK07774          5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSA-   80 (250)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            456888888 55666666666552 35799999988766655555444332  34667777765432      112111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|.||..+.
T Consensus        81 --~~~id~vi~~ag   92 (250)
T PRK07774         81 --FGGIDYLVNNAA   92 (250)
T ss_pred             --hCCCCEEEECCC
Confidence              257899987543

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=84.75  E-value=21  Score=29.50  Aligned_cols=81  Identities=17%  Similarity=0.160  Sum_probs=44.4

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      .++.+|-.|.+. +..+..+++.+. .+.+|+.++.+....+.+.+..++.+.  . .++.+|..+.      .....+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~--~-~~~~~Dv~d~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS--D-YVYELDVSKPEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC--c-eEEEecCCCHHHHHHHHHHHHHH
Confidence            467899999752 334444444432 367898888875433333333333332  2 4566676542      2222222


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++.++.
T Consensus        81 ---~g~iDilVnnAG   92 (274)
T PRK08415         81 ---LGKIDFIVHSVA   92 (274)
T ss_pred             ---cCCCCEEEECCc
Confidence               367998886653

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=84.72  E-value=2.9  Score=32.00  Aligned_cols=97  Identities=14%  Similarity=0.268  Sum_probs=52.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE-EEeccchHHHHHHhhcCCCCCcee
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN-FIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +++.+-+|+..=..-....+ .. ..+|..||.++--++.  + +     .+++. +...   ++...+..   ..++||
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~-~G-A~~iltveyn~L~i~~--~-~-----~dr~ssi~p~---df~~~~~~---y~~~fD   65 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQ-HG-AAKILTVEYNKLEIQE--E-F-----RDRLSSILPV---DFAKNWQK---YAGSFD   65 (177)
T ss_pred             CceEEEEecCCchhhHHHHH-cC-CceEEEEeecccccCc--c-c-----ccccccccHH---HHHHHHHH---hhccch
Confidence            56788888875554332222 22 4689999987522210  0 0     11221 2222   33332221   147899


Q ss_pred             EEEEeCC-----------C---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          150 YAFVDAD-----------K---VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~~-----------~---~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ++.+-+.           .   ......+.++...||+||.+++.-..
T Consensus        66 ~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv  113 (177)
T PF03269_consen   66 FAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV  113 (177)
T ss_pred             hhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence            8754321           1   11345566677899999999986544

>PRK06172 short chain dehydrogenase; Provisional

Probab=84.67  E-value=12  Score=30.15  Aligned_cols=80  Identities=24%  Similarity=0.312  Sum_probs=50.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .++++|-+|++ |..+..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.      +....+. 
T Consensus         6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~-   81 (253)
T PRK06172          6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA-   81 (253)
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            46789999964 445555554442 35699999998877766666665544  3588888887542      1112111 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+++|.|+...
T Consensus        82 --~g~id~li~~a   92 (253)
T PRK06172         82 --YGRLDYAFNNA   92 (253)
T ss_pred             --hCCCCEEEECC
Confidence              25789988654

>PRK07062 short chain dehydrogenase; Provisional

Probab=84.59  E-value=11  Score=30.69  Aligned_cols=83  Identities=11%  Similarity=0.078  Sum_probs=50.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~  142 (237)
                      .++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+.......++.++..|..+.-      ....+. 
T Consensus         7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-   84 (265)
T PRK07062          7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR-   84 (265)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh-
Confidence            4678999996554 444555444 2367899999998777766665554322235777777765431      222111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|.++..+.
T Consensus        85 --~g~id~li~~Ag   96 (265)
T PRK07062         85 --FGGVDMLVNNAG   96 (265)
T ss_pred             --cCCCCEEEECCC
Confidence              367899876643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.57  E-value=14  Score=30.65  Aligned_cols=93  Identities=19%  Similarity=0.136  Sum_probs=53.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHH-------HhcCC-C--------CcEEEEeccchHH
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVI-------KKAGV-D--------HKINFIESEALSV  134 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~~  134 (237)
                      .+|--||+|  ..+..++..+. .+.+|+.+|.+++.++.+++.+       .+.|. .        .++++ ..|.   
T Consensus         4 ~kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~---   77 (282)
T PRK05808          4 QKIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL---   77 (282)
T ss_pred             cEEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH---
Confidence            357778875  43333333221 1458999999999887665332       22231 1        02221 1221   


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcCc--HHHHHHHHccCCCCeEEE
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVNY--WNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~~--~~~~~~~~~~L~~gG~lv  178 (237)
                       ..+       ...|+|+........  .++++.+.+.++++.+++
T Consensus        78 -~~~-------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~  115 (282)
T PRK05808         78 -DDL-------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA  115 (282)
T ss_pred             -HHh-------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence             112       567999877643332  478888888889887764

>PRK06223 malate dehydrogenase; Reviewed

Probab=84.49  E-value=13  Score=31.29  Aligned_cols=37  Identities=19%  Similarity=0.119  Sum_probs=24.6

Q ss_pred             CEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH
Q 026547           72 KKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE  109 (237)
Q Consensus        72 ~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~  109 (237)
                      .+|.-||+|. |....+.+...+-. +|+.+|++++..+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~   40 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQ   40 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhH
Confidence            4788999977 66544433322212 8999999887653

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=84.41  E-value=15  Score=30.77  Aligned_cols=100  Identities=11%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc-chHHHHHHhhcCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE-ALSVLDQLLKDSE  143 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~  143 (237)
                      ...++.+||-.|.  +.|..+..+|+..  +.+++.+..+++..+.+++    .|...-+.....+ ..+.+..+.    
T Consensus       137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----  206 (334)
T PTZ00354        137 DVKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----  206 (334)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----
Confidence            3445678888874  4666777788765  4566778878776666543    3542111111111 222222221    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ....+|+++- ...   ...++.+.+.|+++|.++.-
T Consensus       207 ~~~~~d~~i~-~~~---~~~~~~~~~~l~~~g~~i~~  239 (334)
T PTZ00354        207 GEKGVNLVLD-CVG---GSYLSETAEVLAVDGKWIVY  239 (334)
T ss_pred             CCCCceEEEE-CCc---hHHHHHHHHHhccCCeEEEE
Confidence            1256999873 322   35667788899999988763

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=84.20  E-value=6.1  Score=32.89  Aligned_cols=87  Identities=17%  Similarity=0.099  Sum_probs=51.7

Q ss_pred             EEEEEcccccHHHHHHHhhCC-----CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-----EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      +|.=||||  ..+..++..+-     ...+|++.|.+++.++.+.+   +.|    ++. ..+..+..          ..
T Consensus         4 ~IgfIG~G--~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---~~g----~~~-~~~~~e~~----------~~   63 (272)
T PRK12491          4 QIGFIGCG--NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---KYG----ITI-TTNNNEVA----------NS   63 (272)
T ss_pred             eEEEECcc--HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---hcC----cEE-eCCcHHHH----------hh
Confidence            57778874  45555554332     12369999998876554333   234    222 22332332          34


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      -|+||+........+.++.+...++++ .++++
T Consensus        64 aDiIiLavkP~~~~~vl~~l~~~~~~~-~lvIS   95 (272)
T PRK12491         64 ADILILSIKPDLYSSVINQIKDQIKND-VIVVT   95 (272)
T ss_pred             CCEEEEEeChHHHHHHHHHHHHhhcCC-cEEEE
Confidence            589998877777778788877777665 44444

>PRK09242 tropinone reductase; Provisional

Probab=84.13  E-value=12  Score=30.34  Aligned_cols=83  Identities=8%  Similarity=0.085  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .++++|-.|+..| .+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+.      +....+. 
T Consensus         8 ~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~-   85 (257)
T PRK09242          8 DGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH-   85 (257)
T ss_pred             CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH-
Confidence            4678898987543 4444444332 36789999988877766666555442124577888886542      1222211 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|.++....
T Consensus        86 --~g~id~li~~ag   97 (257)
T PRK09242         86 --WDGLHILVNNAG   97 (257)
T ss_pred             --cCCCCEEEECCC
Confidence              367899876543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.08  E-value=15  Score=30.01  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=45.7

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      +..+|+-+|||. |......+...+ -++++.+|.+.                   ...+.+++.+++.+..-+++.+..
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            457899999974 444333333333 46888888543                   223555666666664444555544


Q ss_pred             cchH-HHHHHhhcCCCCCceeEEEEeCCC
Q 026547          130 EALS-VLDQLLKDSENEGSFDYAFVDADK  157 (237)
Q Consensus       130 d~~~-~~~~~~~~~~~~~~~D~i~id~~~  157 (237)
                      .... ....+      ...+|+|+.-.+.
T Consensus       102 ~i~~~~~~~~------~~~~DlVvd~~D~  124 (240)
T TIGR02355       102 KLDDAELAAL------IAEHDIVVDCTDN  124 (240)
T ss_pred             cCCHHHHHHH------hhcCCEEEEcCCC
Confidence            3322 22333      3679999755443

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08328 hypothetical protein; Provisional

Probab=84.01  E-value=14  Score=29.88  Aligned_cols=80  Identities=18%  Similarity=0.099  Sum_probs=43.4

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc--------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR--------------------ETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~--------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ...+|+-+|||. |...+..+...+ -++++.+|.+.                    ...+.+++.+++.+..-+++.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~  104 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV  104 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence            456899999984 443333333333 46899998542                    12333445555555444455555


Q ss_pred             ccchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          129 SEALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       129 ~d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      +...+ .+..+      ...+|+|+...+
T Consensus       105 ~~~~~~~~~~~------l~~~D~Vid~~d  127 (231)
T PRK08328        105 GRLSEENIDEV------LKGVDVIVDCLD  127 (231)
T ss_pred             ccCCHHHHHHH------HhcCCEEEECCC
Confidence            43322 12222      267899975443

>PRK05939 hypothetical protein; Provisional

Probab=83.96  E-value=29  Score=30.53  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch-HHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRE-TYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .+....+-..++........+-..+|.+.....+...+.++.+|+..+..-. ..... ..++..|.  .+.++..+-.+
T Consensus        46 ~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~G~--~v~~v~~~d~e  122 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGLGV--EVTMVDATDVQ  122 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhcCC--EEEEECCCCHH
Confidence            4666666677777777777887887765554444333455677877765321 11222 23455564  34544332223


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCc--CcHHHHHHHHccCCCCe-EEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKV--NYWNYHERLMKLLKVGG-IAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG-~lv~~~~~  183 (237)
                      .+....     .+.-.+|++.....  .....++.+.++.+..| .+++|++.
T Consensus       123 ~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~  170 (397)
T PRK05939        123 NVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM  170 (397)
T ss_pred             HHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence            333321     24567887764322  12344566666555544 55666654

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=83.90  E-value=11  Score=30.17  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=50.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~  142 (237)
                      .+++||-.|. +|..+..+++.+. .+.+|+.++.+++..+.....++..+  .+++++.+|..+.-      ....+. 
T Consensus         3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~-   78 (258)
T PRK12429          3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVET-   78 (258)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            3467887775 5667777766553 35689999998877666555554433  35788888865422      122111 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+.+|.|+..+
T Consensus        79 --~~~~d~vi~~a   89 (258)
T PRK12429         79 --FGGVDILVNNA   89 (258)
T ss_pred             --cCCCCEEEECC
Confidence              25789988654

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=83.83  E-value=18  Score=29.86  Aligned_cols=97  Identities=18%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++.+||-.|+  +.|..+..+|+..  +.+|+++..+++..+.++    ..|.. .+-....+..+.+..+      
T Consensus       139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~-~~~~~~~~~~~~i~~~------  205 (320)
T cd08243         139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGAD-EVVIDDGAIAEQLRAA------  205 (320)
T ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCc-EEEecCccHHHHHHHh------
Confidence            3456789998885  5666777788875  568999988887655543    34542 1211122222222222      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+|+++ +...   ...++.+.+.|+++|.++.-
T Consensus       206 ~~~~d~vl-~~~~---~~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         206 PGGFDKVL-ELVG---TATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             CCCceEEE-ECCC---hHHHHHHHHHhccCCEEEEE
Confidence            25799987 3322   14567778999999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=83.75  E-value=16  Score=31.09  Aligned_cols=95  Identities=18%  Similarity=0.205  Sum_probs=55.3

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc---chHHHHHHhhcCCCC
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE---ALSVLDQLLKDSENE  145 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~~~  145 (237)
                      ++.+||-.|+|. |..+..+|+... ..+|++++.+++..+.+++    .|..   .++...   ..+.+....     .
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~  241 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G  241 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence            567888887642 444556677653 2378899888777666533    3542   222221   122222221     1


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +.+|+++-....   ...++..++.|+++|.++.-
T Consensus       242 ~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~  273 (350)
T cd08240         242 GGVDAVIDFVNN---SATASLAFDILAKGGKLVLV  273 (350)
T ss_pred             CCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence            368998732221   34577788999999988863

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PLN02650 dihydroflavonol-4-reductase

Probab=83.70  E-value=5.8  Score=33.95  Aligned_cols=79  Identities=9%  Similarity=0.066  Sum_probs=48.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  146 (237)
                      +.++||-.| |+|+.+.++++.+- .+.+|++++.++.............+...+++++.+|..+.  +...      ..
T Consensus         4 ~~k~iLVTG-atGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~------~~   76 (351)
T PLN02650          4 QKETVCVTG-ASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA------IR   76 (351)
T ss_pred             CCCEEEEeC-CcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH------Hh
Confidence            345788777 68888888877663 24689888877655443333222222223588889987653  3332      24


Q ss_pred             ceeEEEEeC
Q 026547          147 SFDYAFVDA  155 (237)
Q Consensus       147 ~~D~i~id~  155 (237)
                      .+|.|+..+
T Consensus        77 ~~d~ViH~A   85 (351)
T PLN02650         77 GCTGVFHVA   85 (351)
T ss_pred             CCCEEEEeC
Confidence            578887543

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=83.68  E-value=20  Score=30.28  Aligned_cols=101  Identities=23%  Similarity=0.250  Sum_probs=60.6

Q ss_pred             hhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++.+||-.|++  .|..+..++++.  +.+|+.+..+++..+.++    ..|...-+.....+..+.+..+.    .
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~~~----~  231 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDDVEAVKELT----G  231 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccHHHHHHHHh----c
Confidence            45567789888875  566777788875  468999988877665443    33432111221112223333331    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+|+++-+...   ......+.+.++++|.++.-
T Consensus       232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence            3569998753322   24566777889999998864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=83.67  E-value=12  Score=29.45  Aligned_cols=79  Identities=13%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI--PEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~--~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ...+|+-+|||.  .+.++++.+  ..-++++.+|.+.                   ...+.+++++++.+..-+++.+.
T Consensus        20 ~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          20 RSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            467899999865  333333322  1146888988652                   12455667777766554566655


Q ss_pred             ccchHHHHHHhhcCCCCCceeEEEEeCC
Q 026547          129 SEALSVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      ....+..+.+      ...||+|+....
T Consensus        98 ~~~~~~~~~~------~~~~dvVi~~~~  119 (197)
T cd01492          98 DDISEKPEEF------FSQFDVVVATEL  119 (197)
T ss_pred             cCccccHHHH------HhCCCEEEECCC
Confidence            5443333332      368999986543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=83.64  E-value=11  Score=31.81  Aligned_cols=99  Identities=15%  Similarity=0.147  Sum_probs=58.7

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH-HHhhc
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD-QLLKD  141 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~  141 (237)
                      .+...++.+||-+|+|. |..+..+++..  +.+ |+.++.+++..+.+++    .+..   .++..+..+... ...  
T Consensus       154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~--  222 (334)
T cd08234         154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED--  222 (334)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh--
Confidence            34455678999998652 55666677764  344 8889888877666543    3432   223222111111 111  


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                        ....+|+++-...   ....+..+.+.|+++|.++.
T Consensus       223 --~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~  255 (334)
T cd08234         223 --NPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLV  255 (334)
T ss_pred             --cCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEE
Confidence              1367999974322   13567777889999998875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=83.61  E-value=18  Score=29.39  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=44.5

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      +..+|+-+||| .|......+...+ -++++.+|.+.                   ...+.+++++.+.+..-+++.+..
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            45689999996 4444443333223 46899999653                   223455666666654445555554


Q ss_pred             cch-HHHHHHhhcCCCCCceeEEEEeC
Q 026547          130 EAL-SVLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       130 d~~-~~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      ... +....+.     ...||+|+...
T Consensus        89 ~i~~~~~~~l~-----~~~~D~Vvdai  110 (231)
T cd00755          89 FLTPDNSEDLL-----GGDPDFVVDAI  110 (231)
T ss_pred             ecCHhHHHHHh-----cCCCCEEEEcC
Confidence            432 1222221     24699987543

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=83.57  E-value=18  Score=27.83  Aligned_cols=74  Identities=20%  Similarity=0.114  Sum_probs=41.6

Q ss_pred             EEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           73 KTIEIGVFT-GYS-LLLTALTIPEDGQIMAIDVNR------------------ETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        73 ~vLeiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      +|+-+|||. |.. +..+++. + -++++.+|.+.                  ...+.+++++++.+..-+++.+.....
T Consensus         1 ~VlViG~GglGs~ia~~La~~-G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS-G-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKID   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc-C-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence            478899974 443 3334442 2 45799999765                  234555666666654444555544432


Q ss_pred             H-HHHHHhhcCCCCCceeEEEEe
Q 026547          133 S-VLDQLLKDSENEGSFDYAFVD  154 (237)
Q Consensus       133 ~-~~~~~~~~~~~~~~~D~i~id  154 (237)
                      . .+..+      ...+|+|+..
T Consensus        79 ~~~~~~~------l~~~DlVi~~   95 (174)
T cd01487          79 ENNLEGL------FGDCDIVVEA   95 (174)
T ss_pred             hhhHHHH------hcCCCEEEEC
Confidence            2 22222      3679988754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.56  E-value=22  Score=28.77  Aligned_cols=78  Identities=17%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .++.+|-.|.+. +..+..+++.+. .+.+|+.++.+....+..    ++.. ..++.++..|..+      .+....++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~----~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSL----QKLV-DEEDLLVECDVASDESIERAFATIKER   80 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHH----Hhhc-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence            567899999763 345555554442 367898887764322222    2221 1346778887653      22222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++.++
T Consensus        81 ---~g~iD~lv~nA   91 (252)
T PRK06079         81 ---VGKIDGIVHAI   91 (252)
T ss_pred             ---hCCCCEEEEcc
Confidence               36799988654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=83.49  E-value=24  Score=29.88  Aligned_cols=73  Identities=14%  Similarity=0.152  Sum_probs=37.4

Q ss_pred             EEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           73 KTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE-IGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        73 ~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +|.-||+|. |....+.+...+...+++.+|.+++..+ .+..........+...+..+|.    +.+       ..-|+
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~----~~l-------~~aDi   70 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY----ADC-------KGADV   70 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH----HHh-------CCCCE
Confidence            577889865 3322222222111258999999987665 3333322222212233333432    222       66799


Q ss_pred             EEEeCC
Q 026547          151 AFVDAD  156 (237)
Q Consensus       151 i~id~~  156 (237)
                      |++...
T Consensus        71 Viita~   76 (308)
T cd05292          71 VVITAG   76 (308)
T ss_pred             EEEccC
Confidence            988654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=83.43  E-value=21  Score=29.77  Aligned_cols=81  Identities=14%  Similarity=0.186  Sum_probs=42.5

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCch-------------------HHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRE-------------------TYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~-------------------~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ...+|+-+||| .|..+...+...+ -++++.+|.+.-                   ..+.+++++.+.+..-+|+.+..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~  107 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD  107 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence            56789999997 3444433322222 368999997531                   12344566655554434554432


Q ss_pred             cch-HHHHHHhhcCCCCCceeEEEEeCC
Q 026547          130 EAL-SVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       130 d~~-~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      -.. +....+.     ...||+|+...+
T Consensus       108 ~i~~e~~~~ll-----~~~~D~VIdaiD  130 (268)
T PRK15116        108 FITPDNVAEYM-----SAGFSYVIDAID  130 (268)
T ss_pred             ccChhhHHHHh-----cCCCCEEEEcCC
Confidence            211 1222221     257999875433

>PRK07478 short chain dehydrogenase; Provisional

Probab=83.42  E-value=13  Score=30.03  Aligned_cols=81  Identities=17%  Similarity=0.185  Sum_probs=50.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      +++++|-.|++.| .+..+++.+. .+.+|+.++.+++.++...+.++..+  .++.++.+|..+.      +....++ 
T Consensus         5 ~~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   80 (254)
T PRK07478          5 NGKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER-   80 (254)
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh-
Confidence            4568888886544 4455544442 35789999998887776666666544  3577788776542      2222221 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|.++..+.
T Consensus        81 --~~~id~li~~ag   92 (254)
T PRK07478         81 --FGGLDIAFNNAG   92 (254)
T ss_pred             --cCCCCEEEECCC
Confidence              357899886653

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=83.40  E-value=1.8  Score=40.02  Aligned_cols=38  Identities=18%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNR  105 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~  105 (237)
                      +.++..|||+||..|.+..-.++.+|.++-|+|||+-|
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            45677899999999999998899999889999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		2e-89
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		4e-79
3cbg_A	232	Functional And Structural Characterization Of A Cat		2e-34
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		2e-33
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		3e-32
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		4e-30
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		3e-28
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		6e-16
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		2e-12
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		7e-12
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		1e-07
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		4e-07
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		2e-06
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		2e-06
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		4e-04
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		4e-04

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  324 bits (831), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 152/225 (67%), Positives = 185/225 (82%)
Query: 13  GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
           GLLQSEEL +YIL TSVYPRE   LKE+R+    HP + MST+P AGQLM+ +LKLVNAK
Sbjct: 13  GLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAK 72
Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
           KTIE+GVFTGYSLLLTAL+IP+DG+I AID +RE YEIGLP I+KAGV+HKINFIES+A+
Sbjct: 73  KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAM 132
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSE 192
             LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI  YDNTLWGGTVA  E
Sbjct: 133 LALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPE 192
Query: 193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
            +VPD ++  R+A ++LN+ LA DPRI++ H+PLGDGIT C R++
Sbjct: 193 SEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRLY 237

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  290 bits (743), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 139/224 (62%), Positives = 182/224 (81%), Gaps = 1/224 (0%)
Query: 14  LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
           LLQS+ LY+YILETSV+PRE E +KE+R+VTA HP  +M+T+ D GQ ++MLLKL+NAK 
Sbjct: 23  LLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKN 82
Query: 74  TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
           T+EIGV+TGYSLL TAL IPEDG+I+A+D+N+E YE+GLPVIKKAGVDHKI+F E  AL 
Sbjct: 83  TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142
Query: 134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGT-VAMSE 192
           VLD+++KD +N GS+D+ FVDADK NY NYH+RL+ L+KVGG+  YDNTLW G+ VA  +
Sbjct: 143 VLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPD 202
Query: 193 EQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
             +  ++R  R   L+LN++LA DPRI++  +P+GDGITIC RI
Sbjct: 203 APLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 119/216 (55%), Gaps = 8/216 (3%)
Query: 20  LYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGV 79
           LY Y+   S+   +  +L ++R  TA  P A M  +P+  Q + +L+ L  AK+ +EIGV
Sbjct: 24  LYSYL--QSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGV 81
Query: 80  FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL 139
           F GYS L  AL +P DGQI+A D +     I     +KAGV  KI+     AL+ L+QL 
Sbjct: 82  FRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLT 141
Query: 140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHL 199
           +  +    FD  F+DADK NY  Y+E  + LL+ GG+ V DN LW G V   + Q     
Sbjct: 142 Q-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ----- 195
Query: 200 RGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
               Q     NR LA D R+++S +PLGDG+T+  +
Sbjct: 196 EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALK 231

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 8/220 (3%)
Query: 17  SEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIE 76
           + ELY+Y+L+ S+  RE   L  +R  T+    A M  AP+  Q M ML++L  AKK +E
Sbjct: 9   TPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLE 66
Query: 77  IGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD 136
           +G FTGYS L  +L +P+DGQ++  D+N    +   P  ++A  +HKI      AL  L 
Sbjct: 67  LGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLH 126
Query: 137 QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVP 196
            LL +   E  FD+ F+DADK NY NY+E  +KL+   G+   DN  W G V       P
Sbjct: 127 SLLNEG-GEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVI-----DP 180
Query: 197 DHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           +   G  +    LN+ + +D R+ +S + + DG+ +   I
Sbjct: 181 NDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 8/221 (3%)
Query: 16  QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTI 75
           +   L++Y+L  S+  RE   L+ +R +T + P+       +  QL+A L +L+ AKK +
Sbjct: 17  EDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKAL 74
Query: 76  EIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135
           ++G FTGYS L  AL +P DG+++  +V+ +  E+G P+ ++A  +HKI+     AL  L
Sbjct: 75  DLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL 134
Query: 136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQV 195
           D+LL   E  G+FD A VDADK N   Y+ER ++LL+ GGI      LW G V       
Sbjct: 135 DELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ----- 188
Query: 196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
           P       +   +LN  +  D R+ +S +PLGDG+T+ ++I
Sbjct: 189 PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  127 bits (320), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 9/222 (4%)
Query: 15  LQSEELYRYILETSVYPREPEHLKEIRD-VTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
           L + ELY+Y+L+ S+  REP  L E+R+  T         TAP+  QL+A+L+KL  AKK
Sbjct: 10  LLTPELYQYLLQVSL--REPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKK 67
Query: 74  TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
            I+IG FTGYS +   L +P+DG ++  DV+ ++  +     +KAG+  KI    S A  
Sbjct: 68  VIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127
Query: 134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEE 193
            L +L+   +    +D  ++DADK N   Y+E  +KLL+ GG+   DN L  G VA  E 
Sbjct: 128 TLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEEN 186
Query: 194 QVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
           Q  ++     Q     N+ +  D R+    +P+GDG+T+  +
Sbjct: 187 QSENN-----QLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 19/227 (8%)
Query: 17  SEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIE 76
           +E L  YI   SV  REP+   ++R  T    +A M  +P+ GQ + +L K+  AK+ IE
Sbjct: 9   TESLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIE 66
Query: 77  IGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD 136
           IG FTGYS L  A  +PEDG+I+  DV+ E   +     K+ G+++KI      AL  L 
Sbjct: 67  IGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETL- 125
Query: 137 QLLKDSENE-----------GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWG 185
           Q+L DS++             S D  F+DADK NY NY+  ++KLLK GG+ + DN LW 
Sbjct: 126 QVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWD 185
Query: 186 GTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITI 232
           G+VA    Q P  + G R+     N  + +D  + +S VP+ DG+++
Sbjct: 186 GSVADLSHQEPSTV-GIRK----FNELVYNDSLVDVSLVPIADGVSL 227

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 55  APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPV 114
           A + GQ +A+L++L  AK+ +EIG   GYS +  A  +P DGQ++ ++ +    ++    
Sbjct: 48  AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVAREN 107
Query: 115 IKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG 174
           ++ AGVD ++   E  AL  L+ L +      +FD  F+DADK N  +Y    ++  + G
Sbjct: 108 LQLAGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 175 GIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPR-----IQLSHVPLGDG 229
            + + DN +  G V ++ +   + ++G RQ           +PR     +Q       DG
Sbjct: 164 TLIIGDNVVRDGEV-VNPQSADERVQGVRQ----FIEXXGAEPRLTATALQTVGTKGWDG 218
Query: 230 ITICW 234
            T+ W
Sbjct: 219 FTLAW 223

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 37  LKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG 96
           L+E+  V A         +P  G+ + +L+++  A+  +EIG   GYS +  A  +   G
Sbjct: 25  LEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG 84
Query: 97  QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD 156
           +++ ++ + +  +I    I++A ++ ++      AL  L Q+  ++E    FD+ F+DAD
Sbjct: 85  RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI--ENEKYEPFDFIFIDAD 142
Query: 157 KVNYWNYHERLMKLLKVGGIAVYDNTLWGGTV 188
           K N   Y E  +KL + G + + DN +  G V
Sbjct: 143 KQNNPAYFEWALKLSRPGTVIIGDNVVREGEV 174

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 10/173 (5%)
Query: 65  LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKI 124
           LLK     + +EIG   GYS +  A  +PE   I++I+ +   YE     +K  G++ +I
Sbjct: 49  LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 125 NFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLW 184
             +  +AL + ++L    E    FD  F+DA K  Y  + +     ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 185 GGTVAMSEEQVPDHLRGGRQAT-LD-LNRSLADDPRIQLSHVPLGDGITICWR 235
            G VA ++    +H R  + AT +D  N+ L + P+      P+GDGI I  +
Sbjct: 164 RGLVAETD---IEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIK 213

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 6/175 (3%)
Query: 61  LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV 120
           L+  L++  N K  +EIG   GYS    A +I +D  +  I+ N    +     +     
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 121 DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180
           ++++  IE  AL   + +     N+  +D  F+DA K     + E    LLK  G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 181 NTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
           N L+ G V+        ++R   +   D N  L   P    + + + DG+ I  +
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 13  GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
           G  + + + RY+ + +  P +P+ + E  D         M+     GQ+M  +++  +  
Sbjct: 2   GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 60
Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
             +E+G + GYS +  A  +    +++ +++N +   I   ++  AG+  K+  +   + 
Sbjct: 61  LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ 120
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGT 187
            ++ QL K  + + + D  F+D  K  Y      L K  LL+ G + + DN +  GT
Sbjct: 121 DLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 176

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 13  GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
           G  + + + RY+ + +  P +P+ + E  D         M+     GQ+M  +++  +  
Sbjct: 4   GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 62
Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
             +E+G + GYS +  A  +    +++ +++N +   I   ++  AG+  K+  +   + 
Sbjct: 63  LVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ 122
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGT 187
            ++ QL K  + + + D  F+D  K  Y      L K  LL+ G + + DN +  GT
Sbjct: 123 DLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 178

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 4/177 (2%)
Query: 13  GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
           G  + + + RY+ + +  P +P+ + E  D         M+     GQ+M  +++  +  
Sbjct: 2   GDTKEQRILRYV-QQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 60
Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
             +E+G + GYS +  A  +    +++ +++N +   I   ++  AG+  K+  +   + 
Sbjct: 61  LVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ 120
Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK--LLKVGGIAVYDNTLWGGT 187
            ++ QL K  + + + D  F+D  K  Y      L K  LL+ G + + DN +  GT
Sbjct: 121 DLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGT 176

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 31  PREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL 90
           P   + + E  D   +     M+     G+++  +++       +E+G + GYS +  A 
Sbjct: 21  PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 80
Query: 91  TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150
            +    +++ I++N +   I   ++  AGV  K+  +   +  ++ QL K  + + + D 
Sbjct: 81  LLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDM 139
Query: 151 AFVDADKVNYWNYHERL--MKLLKVGGIAVYDNTLWGGTVAMSEEQVPD---HLRG 201
            F+D  K  Y      L    LL+ G + + DN +  G         PD   H+RG
Sbjct: 140 VFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRG 187

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 31  PREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL 90
           P   + + E  D   +     M+     G+++  +++       +E+G + GYS +  A 
Sbjct: 18  PGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMAR 77
Query: 91  TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY 150
            +    +++ I++N +   I   ++  AGV  K+  +   +  ++ QL K  + + + D 
Sbjct: 78  LLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVD-TLDM 136
Query: 151 AFVDADKVNYWNYHERL--MKLLKVGGIAVYDNTLWGGTVAMSEEQVPD---HLRG 201
            F+D  K  Y      L    LL+ G + + DN +  G         PD   H+RG
Sbjct: 137 VFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA--------PDFLAHVRG 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	1e-106
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	1e-102
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	2e-92
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	5e-92
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	5e-92
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-90
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	1e-90
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	3e-89
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	4e-88
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	1e-87
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	2e-85
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	6e-81
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	3e-77
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	4e-75
2b25_A	336	Hypothetical protein; structural genomics, methyl	1e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	1e-05
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	2e-04
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	2e-04

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  304 bits (782), Expect = e-106
 Identities = 154/237 (64%), Positives = 188/237 (79%)

Query: 1   MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQ 60
           M     K   + GLLQSEEL +YIL TSVYPRE   LKE+R+    HP + MST+P AGQ
Sbjct: 1   MDFAVMKQVKNTGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQ 60

Query: 61  LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV 120
           LM+ +LKLVNAKKTIE+GVFTGYSLLLTAL+IP+DG+I AID +RE YEIGLP I+KAGV
Sbjct: 61  LMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV 120

Query: 121 DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD 180
           +HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI  YD
Sbjct: 121 EHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYD 180

Query: 181 NTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF 237
           NTLWGGTVA  E +VPD ++  R+A ++LN+ LA DPRI++ H+PLGDGIT C R++
Sbjct: 181 NTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRLY 237

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  296 bits (761), Expect = e-102
 Identities = 139/228 (60%), Positives = 181/228 (79%), Gaps = 1/228 (0%)

Query: 10  SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLV 69
             K LLQS+ LY+YILETSV+PRE E +KE+R+VTA HP  +M+T+ D GQ ++MLLKL+
Sbjct: 19  GHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLI 78

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129
           NAK T+EIGV+TGYSLL TAL IPEDG+I+A+D+N+E YE+GLPVIKKAGVDHKI+F E 
Sbjct: 79  NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138

Query: 130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL VLD+++KD +N GS+D+ FVDADK NY NYH+RL+ L+KVGG+  YDNTLW G+V 
Sbjct: 139 PALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVV 198

Query: 190 MSEEQVPD-HLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              +     ++R  R   L+LN++LA DPRI++  +P+GDGITIC RI
Sbjct: 199 APPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  270 bits (693), Expect = 2e-92
 Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 8/227 (3%)

Query: 10  SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLV 69
             K L  + ELY+Y+L+ S+  RE   L  +R  T+    A M  AP+  Q M ML++L 
Sbjct: 2   VMKHLSLTPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLT 59

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129
            AKK +E+G FTGYS L  +L +P+DGQ++  D+N    +   P  ++A  +HKI     
Sbjct: 60  RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119

Query: 130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL  L  LL +   E  FD+ F+DADK NY NY+E  +KL+   G+   DN  W G V 
Sbjct: 120 PALDTLHSLLNEGG-EHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVI 178

Query: 190 MSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              +          +    LN+ + +D R+ +S + + DG+ +   I
Sbjct: 179 DPNDTSGQ-----TREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI 220

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  269 bits (689), Expect = 5e-92
 Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 9/227 (3%)

Query: 10  SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADH-PRAMMSTAPDAGQLMAMLLKL 68
           S    L + ELY+Y+L+ S+  REP  L E+R+ T        M TAP+  QL+A+L+KL
Sbjct: 5   SINTTLLTPELYQYLLQVSL--REPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKL 62

Query: 69  VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE 128
           + AKK I+IG FTGYS +   L +P+DG ++  DV+ ++  +     +KAG+  KI    
Sbjct: 63  MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL 122

Query: 129 SEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTV 188
           S A   L +L+   +    +D  ++DADK N   Y+E  +KLL+ GG+   DN L  G V
Sbjct: 123 SPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQV 181

Query: 189 AMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
           A  E Q  ++     Q     N+ +  D R+ +  +P+GDG+T+  +
Sbjct: 182 ADEENQSENN-----QLIRLFNQKVYKDERVDMILIPIGDGLTLARK 223

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  269 bits (690), Expect = 5e-92
 Identities = 82/236 (34%), Positives = 120/236 (50%), Gaps = 17/236 (7%)

Query: 10  SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLV 69
           S K +  +E L  YI   SV  REP+   ++R  T    +A M  +P+ GQ + +L K+ 
Sbjct: 2   SRKNISLTESLEEYIFRNSV--REPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKIS 59

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129
            AK+ IEIG FTGYS L  A  +PEDG+I+  DV+ E   +     K+ G+++KI     
Sbjct: 60  GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG 119

Query: 130 EALSVLDQLLKDSE----------NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179
            AL  L  L+                 S D  F+DADK NY NY+  ++KLLK GG+ + 
Sbjct: 120 SALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIA 179

Query: 180 DNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
           DN LW G+VA    Q P             N  + +D  + +S VP+ DG+++  +
Sbjct: 180 DNVLWDGSVADLSHQEPST-----VGIRKFNELVYNDSLVDVSLVPIADGVSLVRK 230

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  266 bits (681), Expect = 1e-90
 Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 10  SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLV 69
                     LY Y+   S+   +  +L ++R  TA  P A M  +P+  Q + +L+ L 
Sbjct: 14  GKGITGFDPSLYSYL--QSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLT 71

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129
            AK+ +EIGVF GYS L  AL +P DGQI+A D +     I     +KAGV  KI+    
Sbjct: 72  GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG 131

Query: 130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL+ L+QL +       FD  F+DADK NY  Y+E  + LL+ GG+ V DN LW G V 
Sbjct: 132 PALATLEQLTQGKP-LPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVT 190

Query: 190 MSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
             + Q         Q     NR LA D R+++S +PLGDG+T+  +
Sbjct: 191 EVDPQEAQT-----QVLQQFNRDLAQDERVRISVIPLGDGMTLALK 231

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  265 bits (679), Expect = 1e-90
 Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 2   AEKAKKAASSKGLL--QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAG 59
                +    + LL  +   L++Y+L  S+  RE   L+ +R +T + P+       +  
Sbjct: 1   GSPPWRGRREQCLLPPEDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQA 58

Query: 60  QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG 119
           QL+A L +L+ AKK +++G FTGYS L  AL +P DG+++  +V+ +  E+G P+ ++A 
Sbjct: 59  QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE 118

Query: 120 VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY 179
            +HKI+     AL  LD+LL   E  G+FD A VDADK N   Y+ER ++LL+ GGI   
Sbjct: 119 AEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAV 177

Query: 180 DNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
              LW G V    +          +   +LN  +  D R+ +S +PLGDG+T+ ++I
Sbjct: 178 LRVLWRGKVLQPPKGDVAA-----ECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  262 bits (671), Expect = 3e-89
 Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%)

Query: 10  SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLV 69
             +G    +   +Y+++  ++  +   ++ +R+    +   +         L+  L+++ 
Sbjct: 15  VPRGSHMDDLNKKYLID--LHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLIKQLIRMN 70

Query: 70  NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES 129
           N K  +EIG   GYS +  A  I +D  +  I+ N    +     +     ++++  IE 
Sbjct: 71  NVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG 129

Query: 130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVA 189
            AL   + +     N+  +D  F+DA K     + E    LLK  G+ + DN L+ G V+
Sbjct: 130 NALEQFENV-----NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVS 184

Query: 190 MSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
                   ++R   +   D N  L   P    + + + DG+ I  +
Sbjct: 185 DIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  259 bits (665), Expect = 4e-88
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 16/224 (7%)

Query: 16  QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTI 75
           Q   +  Y+++  +       L  + +            A + GQ +A+L++L  AK+ +
Sbjct: 11  QWSAVDNYLIKALI--PGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRIL 68

Query: 76  EIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135
           EIG   GYS +  A  +P DGQ++ ++ +    ++    ++ AGVD ++   E  AL  L
Sbjct: 69  EIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL 128

Query: 136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQV 195
           + L        +FD  F+DADK N  +Y    ++  + G + + DN +  G V   +   
Sbjct: 129 ESL----GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSAD 184

Query: 196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPL-----GDGITICW 234
                   Q        +  +PR+  + +        DG T+ W
Sbjct: 185 ER-----VQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAW 223

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  257 bits (660), Expect = 1e-87
 Identities = 49/227 (21%), Positives = 100/227 (44%), Gaps = 14/227 (6%)

Query: 14  LLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKK 73
           +     + +Y+ +  +   +   L+E+  V A         +P  G+ + +L+++  A+ 
Sbjct: 4   IETWTAVDQYVSDVLI--PKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARN 61

Query: 74  TIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS 133
            +EIG   GYS +  A  +   G+++ ++ + +  +I    I++A ++ ++      AL 
Sbjct: 62  ILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121

Query: 134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEE 193
            L Q+  ++E    FD+ F+DADK N   Y E  +KL + G + + DN +  G V  +  
Sbjct: 122 SLQQI--ENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTS 179

Query: 194 QVPDHLRGGRQATLDLNRSLADDPRIQLSHVPL-----GDGITICWR 235
             P       Q        +A +PR+  + +        DG  +   
Sbjct: 180 NDPR-----VQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVV 221

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  252 bits (647), Expect = 2e-85
 Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 10/221 (4%)

Query: 15  LQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKT 74
           L  E L  Y+ +    P   ++++++     +    +        + +  LLK+    + 
Sbjct: 3   LIEERLKHYLEKQI--PARDQYIEQMEREAHEQQ--VPIMDLLGMESLLHLLKMAAPARI 58

Query: 75  IEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV 134
           +EIG   GYS +  A  +P +  I++I+ +   YE     +K  G++ +I  +  +AL +
Sbjct: 59  LEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117

Query: 135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQ 194
            ++L    E    FD  F+DA K  Y  + +    +++ GG+ + DN L+ G VA ++ +
Sbjct: 118 GEKL----ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDIE 173

Query: 195 VPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR 235
              H +         N+ L + P+      P+GDGI I  +
Sbjct: 174 HKRH-KQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIK 213

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  240 bits (614), Expect = 6e-81
 Identities = 38/220 (17%), Positives = 83/220 (37%), Gaps = 17/220 (7%)

Query: 17  SEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIE 76
              +  Y+    + P     +  +  +  +    +       G+L+ +L ++   +  + 
Sbjct: 7   DSRIGAYL--DGLLPEADPVVAAMEQIARER--NIPIVDRQTGRLLYLLARIKQPQLVVV 62

Query: 77  IGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD 136
            G   G +    A  I    +++ ID +R+  E    ++   G+  ++     + L +  
Sbjct: 63  PGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA 122

Query: 137 QLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVP 196
                   +   D  F+D D  N  +  ER+ + L    + +  N L  G+VA S E   
Sbjct: 123 -------GQRDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAESHEDPE 175

Query: 197 DHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
                   A  + N  L+       + VP+G+G+ + +R+
Sbjct: 176 ------TAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL 209

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  231 bits (591), Expect = 3e-77
 Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 16/223 (7%)

Query: 13  GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK 72
           G  + + + RY+ + +  P +P+ + E  D         M+     GQ+M  +++  +  
Sbjct: 2   GDTKEQRILRYVQQNA-KPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPS 60

Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
             +E+G + GYS +  A  +    +++ +++N +   I   ++  AG+  K+  +   + 
Sbjct: 61  LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ 120

Query: 133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM--KLLKVGGIAVYDNTLWGGTVAM 190
            ++ Q LK   +  + D  F+D  K  Y      L    LL+ G + + DN +  GT   
Sbjct: 121 DLIPQ-LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDF 179

Query: 191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITIC 233
                  ++R         +          L ++ + DG+   
Sbjct: 180 LA-----YVR-------GSSSFECTHYSSYLEYMKVVDGLEKA 210

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  226 bits (577), Expect = 4e-75
 Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 19/225 (8%)

Query: 16  QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVN---AK 72
             E L  Y+  T+        +   R+  A+    + +     GQL+  L    N   + 
Sbjct: 4   AFEYLRTYVESTT---ETDAAVARAREDAAEFG--LPAPDEMTGQLLTTLAATTNGNGST 58

Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV-DHKINFIESEA 131
             I I    G   L     + ++  +  ID   E       + ++AG    ++ F+ S  
Sbjct: 59  GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP 118

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMS 191
           L V+ +L        S+   F     ++     +    LL+ GG  V  + L  GT+A  
Sbjct: 119 LDVMSRL-----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQ 173

Query: 192 EEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
             +  D      QA  D +  +       ++ +PLG G+T+  + 
Sbjct: 174 TRKDRDT-----QAARDADEYIRSIEGAHVARLPLGAGLTVVTKA 213

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 3/140 (2%)

Query: 42  DVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAI 101
           D      R    T P    ++  ++ +      +E G  +G   L  +  +   G++++ 
Sbjct: 77  DYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISF 136

Query: 102 DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDA---DKV 158
           +V ++ +++     K      K++ +E    +V       S           DA   D +
Sbjct: 137 EVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML 196

Query: 159 NYWNYHERLMKLLKVGGIAV 178
           N           LK GG+  
Sbjct: 197 NPHVTLPVFYPHLKHGGVCA 216

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 10/137 (7%)

Query: 42  DVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAI 101
           D   +  R      P     +AM+L +    + I+ GV +G    + A  +   G++ A 
Sbjct: 84  DEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAY 143

Query: 102 DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYW 161
           +   E  ++    + K G+  ++     +     D+           D  F+D    + W
Sbjct: 144 EKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--------KDVDALFLDV--PDPW 193

Query: 162 NYHERLMKLLKVGGIAV 178
           NY ++  + LK GG   
Sbjct: 194 NYIDKCWEALKGGGRFA 210

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 42.2 bits (98), Expect = 5e-05
 Identities = 25/148 (16%), Positives = 45/148 (30%), Gaps = 22/148 (14%)

Query: 51  MMSTAPDAGQLMAMLLKLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETY 108
           M          M  L         + +E+G     +         ++  I  I+ N   +
Sbjct: 42  MERWETP---YMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWI--IECNDGVF 96

Query: 109 EIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYH---- 164
           +       +    HK+  ++     V   L      +G FD    D   ++   +H    
Sbjct: 97  QRLRDWAPRQT--HKVIPLKGLWEDVAPTLP-----DGHFDGILYDTYPLSEETWHTHQF 149

Query: 165 ----ERLMKLLKVGGIAVYDNTLWGGTV 188
                   +LLK GG+  Y N    G +
Sbjct: 150 NFIKNHAFRLLKPGGVLTYCNLTSWGEL 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 37/259 (14%), Positives = 71/259 (27%), Gaps = 75/259 (28%)

Query: 14  LLQSEELYRYILETSVYPREPEHLKEIR---DVTADHPRAMMSTAPDAGQLMAMLLKL-- 68
           L   ++L   I     +    +H   I+          R ++ + P        LL L  
Sbjct: 199 LEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLVLLN 252

Query: 69  VNAKKTIEIGVFTGYS-LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127
           V   K      F     +LLT  T     Q+        T  I L         H +   
Sbjct: 253 VQNAKAWN--AFNLSCKILLT--T--RFKQVTDFLSAATTTHISL-------DHHSMTLT 299

Query: 128 ESEALSVLDQLLKDSENE-------GS-FDYAFVDA---DKVNYWNY-----HERLMKLL 171
             E  S+L + L     +        +    + +     D +  W+       ++L  ++
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 172 KVG--------------GIAVY-DNT---------LWGGTVAMSEEQVPDHLRGGRQATL 207
           +                 ++V+  +          +W   +      V + L        
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH------- 412

Query: 208 DLNRSLAD-DPRIQLSHVP 225
               SL +  P+     +P
Sbjct: 413 --KYSLVEKQPKESTISIP 429

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 9/137 (6%)

Query: 42  DVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAI 101
           +      R+   T P     M  LL L    + +E G  +G   L  A  + E G + + 
Sbjct: 68  EYLLHMKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESY 127

Query: 102 DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYW 161
           +            ++       + F   +       L +    E ++D   +D   +  W
Sbjct: 128 EARPHHLAQAERNVRAFWQVENVRFHLGK-------LEEAELEEAAYDGVALDL--MEPW 178

Query: 162 NYHERLMKLLKVGGIAV 178
              E+    LK     V
Sbjct: 179 KVLEKAALALKPDRFLV 195

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 10/137 (7%)

Query: 42  DVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAI 101
           D      R      P    L+     +      +E GV +G   L  A  +  +G++++ 
Sbjct: 65  DYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSY 124

Query: 102 DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYW 161
           ++  +  ++    IK AG D ++     +    +++         + D+  +D  +    
Sbjct: 125 EIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--------ENVDHVILDLPQP--E 174

Query: 162 NYHERLMKLLKVGGIAV 178
              E   K LK GG  V
Sbjct: 175 RVVEHAAKALKPGGFFV 191

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	100.0
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	100.0
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.98
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.97
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.97
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.82
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.77
2o07_A	304	Spermidine synthase; structural genomics, structur	99.74
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.73
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.73
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.72
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.72
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.72
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.71
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.71
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.71
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.7
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.7
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.69
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.69
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.68
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.68
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.68
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.67
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.67
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.67
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.67
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.66
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.66
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.65
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.65
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.65
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.65
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.65
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.65
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.65
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.64
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.64
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.64
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.63
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.63
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.63
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.63
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.63
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.63
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.62
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.62
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.62
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.62
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.62
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.61
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.61
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.61
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.61
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.61
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.6
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.6
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.6
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.59
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.59
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.59
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.58
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.58
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.58
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.58
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.58
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.58
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.57
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.57
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.57
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.57
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.57
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.57
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.57
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.57
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.57
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.57
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.57
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.56
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.56
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.56
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.56
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.56
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.56
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.56
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.56
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.56
3ocj_A	305	Putative exported protein; structural genomics, PS	99.55
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.55
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.55
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.55
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.55
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.55
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.55
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.55
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.54
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.54
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.54
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.54
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.54
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.54
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.54
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.53
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.53
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.53
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.53
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.53
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.52
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.52
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.52
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.52
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.52
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.52
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.52
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.52
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.51
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.51
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.5
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.5
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.5
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.5
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.5
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.5
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.5
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.5
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.49
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.49
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.49
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.49
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.49
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.49
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.48
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.48
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.48
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.48
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.48
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.48
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.48
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.47
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.47
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.47
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.47
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.47
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.47
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.47
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.47
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.46
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.46
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.46
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.46
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.45
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.45
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.45
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.45
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.44
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.44
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.44
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.44
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.44
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.44
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.44
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.44
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.43
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.43
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.43
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.43
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.43
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.42
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.42
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.42
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.42
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.42
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.42
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.42
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.42
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.41
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.41
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.41
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.4
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.4
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.4
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.4
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.4
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.39
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.39
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.38
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.38
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.38
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.37
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.37
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.37
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.37
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.36
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.36
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.36
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.36
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.36
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.36
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.36
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.36
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.35
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.35
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.35
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.33
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.32
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.32
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.31
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.31
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.3
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.29
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.28
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.27
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.27
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.26
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.26
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.25
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.24
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.24
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.23
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.23
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.22
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.21
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.21
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.19
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.19
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.16
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.16
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.16
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.15
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.15
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.14
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.14
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.12
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.12
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.11
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.11
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.11
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.11
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.1
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.08
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.07
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.06
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.05
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.02
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.0
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.99
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.98
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.96
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.94
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.94
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.93
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.93
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.91
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.88
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.87
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.82
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.81
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.79
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.78
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.76
3lkd_A	542	Type I restriction-modification system methyltrans	98.72
3khk_A	544	Type I restriction-modification system methylation	98.68
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.67
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.57
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.43
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.35
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.29
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.98
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.91
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.88
3ufb_A	530	Type I restriction-modification system methyltran	97.87
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.86
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.85
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.81
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.78
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.78
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.74
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.64
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.59
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.43
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.41
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.36
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.25
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.23
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.18
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.13
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.11
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.07
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.06
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.05
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.02
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.02
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.0
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.98
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.93
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.92
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.91
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.9
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.76
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.75
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.74
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	96.73
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.71
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.69
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.62
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.59
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.58
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.57
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.57
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.56
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.55
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.55
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.49
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.49
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.48
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.46
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.41
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.41
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.39
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.34
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.33
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.26
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.23
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.17
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.16
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.16
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.16
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.08
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.05
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.01
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.01
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.99
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.97
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.95
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.88
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.86
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.86
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.86
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.69
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.67
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.67
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.66
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.57
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.29
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.18
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.17
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.15
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.12
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.09
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.02
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.01
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	94.9
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.9
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.57
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.54
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.54
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	94.45
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.41
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.39
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.37
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	94.28
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.28
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.27
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.09
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.05
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.03
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.99
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.94
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.72
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.61
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.59
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.58
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.51
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	93.5
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.47
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.41
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.29
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	93.19
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	93.14
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.09
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.99
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.95
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.91
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.89
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.89
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	92.83
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.81
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.8
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.8
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.79
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.49
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.45
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	92.35
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.24
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	92.13
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.11
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.03
1lnq_A	336	MTHK channels, potassium channel related protein;	91.72
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.67
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	91.51
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.5
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	91.5
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.27
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.24
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.1
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.81
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.78
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.71
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	90.69
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.65
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.62
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	90.49
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.48
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.45
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.36
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	90.35
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.32
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.25
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.23
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	90.21
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	90.2
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	90.03
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	90.03
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	89.94
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	89.78
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.47
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	89.17
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.12
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	89.04
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.95
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	88.94
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	88.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.89
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	88.88
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	88.83
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.82
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.72
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	88.71
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.64
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	88.51
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	88.5
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	88.47
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	88.45
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	88.43
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	88.3
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.28
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	88.27
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.22
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	88.19
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	88.09
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	88.03
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.03
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	88.02
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	88.01
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	87.86
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	87.84
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	87.69
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	87.45
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	87.4
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	87.38
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	87.37
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	87.31
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	87.3
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	87.26
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	87.24
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	87.21
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	87.1
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	86.97
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	86.92
3imf_A	257	Short chain dehydrogenase; structural genomics, in	86.81
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	86.68
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	86.51
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	86.51
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	86.48
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	86.47
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	86.45
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	86.41
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	86.3

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=2e-38  Score=257.79  Aligned_cols=237  Identities=65%  Similarity=1.068  Sum_probs=201.0

Q ss_pred             ChhhhhhhhccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEccc
Q 026547            1 MAEKAKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVF   80 (237)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G   80 (237)
                      |+=+.++.++.+.+..++.+++|+.+++.++.+++.+.++++++.+++++.+.+.+..++++..++...++++|||||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G   80 (237)
T 3c3y_A            1 MDFAVMKQVKNTGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVF   80 (237)
T ss_dssp             ------------CCBSCHHHHHHHHHHHTGGGSCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCccccccccccccCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence            45566777778889999999999999876677889999999999888888898999999999999999999999999999


Q ss_pred             ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCc
Q 026547           81 TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNY  160 (237)
Q Consensus        81 ~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~  160 (237)
                      +|++++++++.++++++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+.+++...++||+||+|+....+
T Consensus        81 ~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~~  160 (237)
T 3c3y_A           81 TGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNY  160 (237)
T ss_dssp             TSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGGH
T ss_pred             CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHHH
Confidence            99999999999887799999999999999999999999998889999999999887664331113789999999999899


Q ss_pred             HHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          161 WNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       161 ~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      ..+++.+.++|+|||+|+++|++|.|.+.++.+..+...+.....+++|++.+..++++.++++|+++|+.+++|+.
T Consensus       161 ~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~~  237 (237)
T 3c3y_A          161 IKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRLY  237 (237)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEECC
T ss_pred             HHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEcC
Confidence            99999999999999999999999999988774443334445677899999999999999999999999999999974

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=1.2e-37  Score=254.79  Aligned_cols=233  Identities=60%  Similarity=0.996  Sum_probs=200.0

Q ss_pred             hhhhhccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHH
Q 026547            5 AKKAASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYS   84 (237)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~   84 (237)
                      .++.+..+.+..++++++|+.+++.++.+++.+.++++++.+++++.+.+.+..++++..++...++++|||||||+|++
T Consensus        14 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~   93 (247)
T 1sui_A           14 RHQEVGHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYS   93 (247)
T ss_dssp             -------CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHH
T ss_pred             cccccccccCCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHH
Confidence            35566678889999999999998767788899999999999888888999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHH
Q 026547           85 LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYH  164 (237)
Q Consensus        85 ~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~  164 (237)
                      ++++++.++++++|+++|+++.+++.|+++++..|+.++++++.+|+.+.++.+.+++...++||+||+|+....+..++
T Consensus        94 ~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l  173 (247)
T 1sui_A           94 LLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYH  173 (247)
T ss_dssp             HHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHH
T ss_pred             HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHHHHHHH
Confidence            99999998767899999999999999999999999888899999999998776532110137899999999988999999


Q ss_pred             HHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccc-cchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          165 ERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHL-RGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       165 ~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      +.+.++|+|||+|+++|++|.|.+.++....+... +.....+++|++.+..++++..+++|+++|+.+++|+.
T Consensus       174 ~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~k~~  247 (247)
T 1sui_A          174 KRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRIK  247 (247)
T ss_dssp             HHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCCccEEEEEcC
Confidence            99999999999999999999999887754433221 34567899999999999999999999999999999874

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=5e-37  Score=250.30  Aligned_cols=220  Identities=36%  Similarity=0.608  Sum_probs=194.3

Q ss_pred             ccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHH
Q 026547           10 SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTA   89 (237)
Q Consensus        10 ~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la   89 (237)
                      +.+.+.+++.+++|+.+++.  .+++.+.++++.+...+++.+.+.+..++++..++...++++|||||||+|+++++++
T Consensus         2 ~~~~~~~~~~~~~Y~~~~~~--~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la   79 (242)
T 3r3h_A            2 VMKHLSLTPELYKYLLDISL--REHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMS   79 (242)
T ss_dssp             --CCCCCCHHHHHHHHHHHC--CCCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHhcC--CCCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHH
Confidence            35667789999999999753  6678899999988888778888999999999999999999999999999999999999


Q ss_pred             hhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHc
Q 026547           90 LTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK  169 (237)
Q Consensus        90 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~  169 (237)
                      +.++++++|+++|+++++++.|+++++..|+.++++++++|+.+.++.+.+++ ..++||+||+|.....+..+++.+.+
T Consensus        80 ~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~-~~~~fD~V~~d~~~~~~~~~l~~~~~  158 (242)
T 3r3h_A           80 LALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG-GEHQFDFIFIDADKTNYLNYYELALK  158 (242)
T ss_dssp             HTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH-CSSCEEEEEEESCGGGHHHHHHHHHH
T ss_pred             HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc-CCCCEeEEEEcCChHHhHHHHHHHHH
Confidence            99876899999999999999999999999998899999999999877653210 12789999999998889999999999


Q ss_pred             cCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          170 LLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       170 ~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      +|+|||+|+++|++|.|.+.++...     ...+..+++|++.+..+++|+++++|+++|+.+++|++
T Consensus       159 ~LkpGG~lv~d~~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~~  221 (242)
T 3r3h_A          159 LVTPKGLIAIDNIFWDGKVIDPNDT-----SGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPIA  221 (242)
T ss_dssp             HEEEEEEEEEECSSSSSCSSCTTCC-----CHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEEEEEC-
T ss_pred             hcCCCeEEEEECCccCCcccCcccc-----ChHHHHHHHHHHHHhhCCCEEEEEEEccCceEEEEEcC
Confidence            9999999999999999988876544     34567899999999999999999999999999999874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.5e-35  Score=238.35  Aligned_cols=205  Identities=21%  Similarity=0.325  Sum_probs=183.5

Q ss_pred             CcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCC---EEEEEcccccHHHHHHHhhC
Q 026547           16 QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAK---KTIEIGVFTGYSLLLTALTI   92 (237)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~vLeiG~G~G~~~~~la~~~   92 (237)
                      ..+++.+|++++.   .+++.+.+++.++.+.+.+  .+.+..++++..++...+++   +|||||||+|++++++++++
T Consensus         4 ~~~~~~~y~~~~~---~~~~~l~~~~~~a~~~~~p--~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~   78 (221)
T 3dr5_A            4 AFEYLRTYVESTT---ETDAAVARAREDAAEFGLP--APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGL   78 (221)
T ss_dssp             HHHHHHHHHHTTS---CCCHHHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHcC---CCCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhC
Confidence            4678999999843   4788999999999888665  46899999999999988888   99999999999999999998


Q ss_pred             CCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccC
Q 026547           93 PEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLL  171 (237)
Q Consensus        93 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L  171 (237)
                      +++++|+++|+++++++.|+++++..|+. ++++++++|+.+.++.+.     .++||+||+|+...++..+++.+.++|
T Consensus        79 ~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~-----~~~fD~V~~d~~~~~~~~~l~~~~~~L  153 (221)
T 3dr5_A           79 ADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA-----NDSYQLVFGQVSPMDLKALVDAAWPLL  153 (221)
T ss_dssp             CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC-----TTCEEEEEECCCTTTHHHHHHHHHHHE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc-----CCCcCeEEEcCcHHHHHHHHHHHHHHc
Confidence            77899999999999999999999999997 789999999999876541     378999999999999999999999999


Q ss_pred             CCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEE
Q 026547          172 KVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR  235 (237)
Q Consensus       172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~  235 (237)
                      +|||+++++|++|.|.+.++...     ...+..+++|++++.++|+++++++|+++|+.++++
T Consensus       154 kpGG~lv~dn~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~  212 (221)
T 3dr5_A          154 RRGGALVLADALLDGTIADQTRK-----DRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTK  212 (221)
T ss_dssp             EEEEEEEETTTTGGGTCSCSSCC-----CHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEEE
T ss_pred             CCCcEEEEeCCCCCCcCCCCCCC-----ChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHHHH
Confidence            99999999999999998876543     344667899999999999999999999999999987

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=3.9e-34  Score=230.08  Aligned_cols=220  Identities=37%  Similarity=0.580  Sum_probs=195.1

Q ss_pred             hccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHh-hCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHH
Q 026547            9 ASSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTA-DHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLL   87 (237)
Q Consensus         9 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~   87 (237)
                      ++.+.+.+++.+.+|+..+.  +..++.+.++++.+. .++++.+.+.+..++++..++...++.+|||+|||+|+.+.+
T Consensus         4 m~~~~~~~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~   81 (225)
T 3tr6_A            4 MSINTTLLTPELYQYLLQVS--LREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIA   81 (225)
T ss_dssp             CCCCSCCCCHHHHHHHHHTT--CCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHH
Confidence            45677889999999999964  466788899999888 888888889999999999999999999999999999999999


Q ss_pred             HHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHH
Q 026547           88 TALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERL  167 (237)
Q Consensus        88 la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~  167 (237)
                      ++..++.+++|+++|+++.+++.++++++..++.++++++++|+.+.++.+... ...++||+||++.....+..+++.+
T Consensus        82 la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~~~~l~~~  160 (225)
T 3tr6_A           82 MGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA-GQAWQYDLIYIDADKANTDLYYEES  160 (225)
T ss_dssp             HHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT-TCTTCEEEEEECSCGGGHHHHHHHH
T ss_pred             HHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc-cCCCCccEEEECCCHHHHHHHHHHH
Confidence            999887678999999999999999999999999888999999998887765321 0117899999999888899999999


Q ss_pred             HccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          168 MKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       168 ~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      .++|+|||+++++|++|.|.+.++...     ......+++|++.+..+++++.+++|+++|+.+++|+
T Consensus       161 ~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          161 LKLLREGGLIAVDNVLRRGQVADEENQ-----SENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             HHHEEEEEEEEEECSSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHhcCCCcEEEEeCCCcCCcccCcccc-----ChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            999999999999999999988776544     3456789999999999999999999999999999986

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=5.3e-34  Score=231.00  Aligned_cols=219  Identities=38%  Similarity=0.584  Sum_probs=192.9

Q ss_pred             ccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHH
Q 026547           10 SSKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTA   89 (237)
Q Consensus        10 ~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la   89 (237)
                      -++....++.+++|+.+++  +.+++.+.+++..+.+.+++.+.+.+..++++..++...++++|||||||+|+++++++
T Consensus        14 ~~~~~~~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la   91 (232)
T 3cbg_A           14 GKGITGFDPSLYSYLQSIS--ADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMA   91 (232)
T ss_dssp             -CCBTTSCHHHHHHHHHTS--CCCCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHH
T ss_pred             ccccccchHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHH
Confidence            3455678899999999864  46678999999998888888788999999999999998899999999999999999999


Q ss_pred             hhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHc
Q 026547           90 LTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK  169 (237)
Q Consensus        90 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~  169 (237)
                      +.++++++|+++|+++.+++.|+++++..|+.++++++.+|+.+.++.+...+ ..++||+||++.....+..+++.+.+
T Consensus        92 ~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~-~~~~fD~V~~d~~~~~~~~~l~~~~~  170 (232)
T 3cbg_A           92 LQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGK-PLPEFDLIFIDADKRNYPRYYEIGLN  170 (232)
T ss_dssp             TTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSS-SCCCEEEEEECSCGGGHHHHHHHHHH
T ss_pred             HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-CCCCcCEEEECCCHHHHHHHHHHHHH
Confidence            98876789999999999999999999999988889999999988877664220 01689999999988889999999999


Q ss_pred             cCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          170 LLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       170 ~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      +|+|||+|+++|+.|.|.+.++...     ...+..+++|++.+..++++..+++|+++|+.+++|+
T Consensus       171 ~LkpgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          171 LLRRGGLMVIDNVLWHGKVTEVDPQ-----EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             TEEEEEEEEEECTTGGGGGGCSSCC-----SHHHHHHHHHHHHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HcCCCeEEEEeCCCcCCccCCcccC-----ChHHHHHHHHHHHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            9999999999999999988776543     4567889999999999999999999999999999985

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=4.5e-33  Score=223.68  Aligned_cols=212  Identities=22%  Similarity=0.375  Sum_probs=189.0

Q ss_pred             cHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC
Q 026547           17 SEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG   96 (237)
Q Consensus        17 ~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~   96 (237)
                      -+.+.+|+.++.  +..++.+.++++.+...+.+.+.+.+..++++..++...++.+|||||||+|+++.++++.+++++
T Consensus         7 ~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~   84 (223)
T 3duw_A            7 WTAVDQYVSDVL--IPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGG   84 (223)
T ss_dssp             HHHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHHHhC--CCCCHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCC
Confidence            467889999864  467788999999999988888888999999999999999999999999999999999999987678


Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeE
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGI  176 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~  176 (237)
                      +|+++|+++.+++.|+++++..++.++++++++|+.+.++.+...  ..++||+||+|.....+..+++.+.++|+|||+
T Consensus        85 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~  162 (223)
T 3duw_A           85 RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE--KYEPFDFIFIDADKQNNPAYFEWALKLSRPGTV  162 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT--TCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcE
Confidence            999999999999999999999999888999999999887766432  126799999999988889999999999999999


Q ss_pred             EEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeec-----CCceEEEEEcC
Q 026547          177 AVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPL-----GDGITICWRIF  237 (237)
Q Consensus       177 lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-----~~Gl~i~~~~~  237 (237)
                      ++++|++|.|.+..+...     ......+++|++.+..++++.++++|+     ++|+.++++++
T Consensus       163 lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~~  223 (223)
T 3duw_A          163 IIGDNVVREGEVIDNTSN-----DPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVKE  223 (223)
T ss_dssp             EEEESCSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             EEEeCCCcCCcccCcccc-----chHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCeeEEEEEeC
Confidence            999999999988776544     345678999999999999999999999     99999999875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=100.00  E-value=2.8e-33  Score=226.70  Aligned_cols=215  Identities=20%  Similarity=0.309  Sum_probs=183.7

Q ss_pred             cCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHh
Q 026547           11 SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL   90 (237)
Q Consensus        11 ~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~   90 (237)
                      .+...+++.+.+|+.++.  +..++.+.++++++...+++.  +.+..++++..++...++.+|||||||+|+++.++++
T Consensus        16 ~~~~~~~~~l~~yl~~~~--~~~~~~l~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~   91 (232)
T 3ntv_A           16 PRGSHMDDLNKKYLIDLH--QHQNSSIEVLREFAEVNEVPI--VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS   91 (232)
T ss_dssp             -----CHHHHHHHHHHHH--GGGCCGGGGHHHHHHHTTCCC--CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCCC--cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHH
Confidence            345668899999999864  345566777888887776654  5799999999999999999999999999999999999


Q ss_pred             hCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH-HHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHc
Q 026547           91 TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD-QLLKDSENEGSFDYAFVDADKVNYWNYHERLMK  169 (237)
Q Consensus        91 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~  169 (237)
                      ..+ +++|+++|+++.+++.|+++++..++.++++++++|+.+.++ .+      .++||+||++.....+..+++.+.+
T Consensus        92 ~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------~~~fD~V~~~~~~~~~~~~l~~~~~  164 (232)
T 3ntv_A           92 ISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------DKVYDMIFIDAAKAQSKKFFEIYTP  164 (232)
T ss_dssp             TCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------TSCEEEEEEETTSSSHHHHHHHHGG
T ss_pred             hCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------cCCccEEEEcCcHHHHHHHHHHHHH
Confidence            766 789999999999999999999999988889999999998876 54      4799999999999999999999999


Q ss_pred             cCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          170 LLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       170 ~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      +|+|||+++++|++|.|.+.++....++........+++|++.+..+++++.+++|+++|+.+++|+
T Consensus       165 ~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          165 LLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             GEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             hcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCCceEEEEEC
Confidence            9999999999999999988776542233334456789999999999999999999999999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=100.00  E-value=4.6e-32  Score=218.56  Aligned_cols=214  Identities=36%  Similarity=0.624  Sum_probs=188.8

Q ss_pred             CCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026547           15 LQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (237)
Q Consensus        15 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~   94 (237)
                      ...+.+++|+..++  ...++.+.+++..+.....+.+.+.+..++++..++...++++|||+|||+|++++++++.++.
T Consensus        16 ~~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~   93 (229)
T 2avd_A           16 PEDSRLWQYLLSRS--MREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPA   93 (229)
T ss_dssp             CTTSHHHHHHHHTT--CCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCT
T ss_pred             hhHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCC
Confidence            46778999999864  3567889999999888777888899999999999999999999999999999999999998876


Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG  174 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g  174 (237)
                      +++|+++|+++.+++.++++++..|+.++++++++|+.+.++.+...+ ..++||+||+|.....+..+++.+.++|+||
T Consensus        94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg  172 (229)
T 2avd_A           94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-EAGTFDVAVVDADKENCSAYYERCLQLLRPG  172 (229)
T ss_dssp             TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CTTCEEEEEECSCSTTHHHHHHHHHHHEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-CCCCccEEEECCCHHHHHHHHHHHHHHcCCC
Confidence            789999999999999999999999988889999999988877664320 0168999999998888899999999999999


Q ss_pred             eEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          175 GIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       175 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      |+++++|++|.|.+.++...     ......+++|++.+..++++.++++|+++|+.+++|+
T Consensus       173 G~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          173 GILAVLRVLWRGKVLQPPKG-----DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             EEEEEECCSGGGGGGSCCTT-----CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             eEEEEECCCcCCcccCcccC-----ChHHHHHHHHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence            99999999999988766433     4567889999999999999999999999999999985

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=4.1e-32  Score=222.02  Aligned_cols=210  Identities=25%  Similarity=0.440  Sum_probs=186.2

Q ss_pred             cHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCC
Q 026547           17 SEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDG   96 (237)
Q Consensus        17 ~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~   96 (237)
                      -+.+.+|+.++  .+..++.+.++++.+.+.+++.+.+.+..++++..++...++++|||||||+|+++.++++.+++++
T Consensus        12 ~~~~~~y~~~~--~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~   89 (248)
T 3tfw_A           12 WSAVDNYLIKA--LIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADG   89 (248)
T ss_dssp             HHHHHHHHHHH--HSCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTC
T ss_pred             hHHHHHHHHhc--CCCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCC
Confidence            45678999885  3466788999999998888888888999999999999999999999999999999999999987678


Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeE
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGI  176 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~  176 (237)
                      +|+++|+++.+++.|+++++..|+.++++++++|+.+.++.+.    ..++||+||+|.....+..+++.+.++|+|||+
T Consensus        90 ~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~  165 (248)
T 3tfw_A           90 QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTL  165 (248)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCE
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeE
Confidence            9999999999999999999999998899999999988777541    125899999999988899999999999999999


Q ss_pred             EEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEee-ecC----CceEEEEEcC
Q 026547          177 AVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHV-PLG----DGITICWRIF  237 (237)
Q Consensus       177 lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-p~~----~Gl~i~~~~~  237 (237)
                      |+++|++|.|.+.++...     ...+..+++|++.+..+++++.+++ |++    ||+.+++++.
T Consensus       166 lv~~~~~~~g~v~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~~  226 (248)
T 3tfw_A          166 IIGDNVVRDGEVVNPQSA-----DERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVNA  226 (248)
T ss_dssp             EEEECCSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEEEEEEEECC
T ss_pred             EEEeCCCcCCcccCcccc-----chHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCeeEEEEEeC
Confidence            999999999988876544     4567889999999999999999988 666    9999999873

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=100.00  E-value=4.2e-31  Score=214.66  Aligned_cols=219  Identities=36%  Similarity=0.561  Sum_probs=188.3

Q ss_pred             cCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHh
Q 026547           11 SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTAL   90 (237)
Q Consensus        11 ~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~   90 (237)
                      .+.+...+.+++|+..++  +.+++.+.++++.+...+++.+.+.+..++++..++...++.+|||||||+|+.+.++++
T Consensus         3 ~~~~~~~~~~~~y~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~   80 (239)
T 2hnk_A            3 RKNISLTESLEEYIFRNS--VREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFAS   80 (239)
T ss_dssp             CCSCCCCHHHHHHHHHTT--CCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHH
T ss_pred             cccccchHHHHHHHHHcc--CCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHH
Confidence            345778899999999864  466788999999999888888889999999999999988999999999999999999999


Q ss_pred             hCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc--------CCCC--CceeEEEEeCCCcCc
Q 026547           91 TIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD--------SENE--GSFDYAFVDADKVNY  160 (237)
Q Consensus        91 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--------~~~~--~~~D~i~id~~~~~~  160 (237)
                      .++++++|+++|+++.+++.|+++++..|..++++++.+|+.+.++.+...        ++..  ++||+||++.....+
T Consensus        81 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~  160 (239)
T 2hnk_A           81 ALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENY  160 (239)
T ss_dssp             HSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGH
T ss_pred             hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHH
Confidence            887678999999999999999999999998778999999998876654210        1112  689999999888888


Q ss_pred             HHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          161 WNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       161 ~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      ..+++.+.++|+|||++++++++|.|.+.++...     ......+++|++.+..++++.+.++|+++|+.+++|+
T Consensus       161 ~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          161 PNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ-----EPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC-----CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHHcCCCeEEEEEccccCCcccCcccc-----chHHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence            8999999999999999999999999987765433     3567788999999999999999999999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.98  E-value=8.6e-31  Score=208.68  Aligned_cols=205  Identities=18%  Similarity=0.291  Sum_probs=172.9

Q ss_pred             CCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026547           15 LQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (237)
Q Consensus        15 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~   94 (237)
                      ...+.+++|+.+++  +.+++.+.++++++.+.+++  .+.+..+.++..++...++++|||||||+|+.+.++++.+++
T Consensus         5 ~~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~   80 (210)
T 3c3p_A            5 IVDSRIGAYLDGLL--PEADPVVAAMEQIARERNIP--IVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISI   80 (210)
T ss_dssp             CBCHHHHHHHHHTS--CSCCHHHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCT
T ss_pred             hhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHcCCC--CcCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCC
Confidence            36778999999864  46678899999998887654  578999999999888888999999999999999999998876


Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG  174 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g  174 (237)
                      +++|+++|+++.+++.|+++++..++.++++++++|+.+.++.+      .+ ||+||++.....+..+++.+.++|+||
T Consensus        81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~-fD~v~~~~~~~~~~~~l~~~~~~Lkpg  153 (210)
T 3c3p_A           81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ------RD-IDILFMDCDVFNGADVLERMNRCLAKN  153 (210)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC------CS-EEEEEEETTTSCHHHHHHHHGGGEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC------CC-CCEEEEcCChhhhHHHHHHHHHhcCCC
Confidence            78999999999999999999999998778999999998876543      35 999999998888999999999999999


Q ss_pred             eEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          175 GIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       175 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      |+++++|+.|.|.+.++ ..     ......+++|++.+..++++...++|+++|+.+++|+
T Consensus       154 G~lv~~~~~~~g~~~~~-~~-----~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          154 ALLIAVNALRRGSVAES-HE-----DPETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             EEEEEESSSSCC------------------CCCHHHHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             eEEEEECccccCcccCc-cc-----chHHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEeC
Confidence            99999999999876643 21     2345568889999999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.97  E-value=8.1e-30  Score=204.70  Aligned_cols=202  Identities=20%  Similarity=0.350  Sum_probs=169.2

Q ss_pred             CCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC
Q 026547           13 GLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTI   92 (237)
Q Consensus        13 ~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~   92 (237)
                      +...++++++|+.+++....+...+..++.++....+. +.+.+..++++..++...++++|||||||+|.+++++++.+
T Consensus         2 ~~~~~~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~   80 (221)
T 3u81_A            2 GDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWA-MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLL   80 (221)
T ss_dssp             CCCHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHTCG-GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhcCcC-cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhC
Confidence            34557899999999875434446778888887766554 67899999999999999999999999999999999999988


Q ss_pred             CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHH---HHHHHHc
Q 026547           93 PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWN---YHERLMK  169 (237)
Q Consensus        93 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~---~~~~~~~  169 (237)
                      +++++|+++|+++.+++.|+++++..++.++++++++|+.+.++.+..+ ...++||+||+|.....+..   +++.+ +
T Consensus        81 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~  158 (221)
T 3u81_A           81 QPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKC-G  158 (221)
T ss_dssp             CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT-SCCCCCSEEEECSCGGGHHHHHHHHHHT-T
T ss_pred             CCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh-cCCCceEEEEEcCCcccchHHHHHHHhc-c
Confidence            6688999999999999999999999999888999999998877655211 11268999999998777764   45555 9


Q ss_pred             cCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeee-------cCCceEEEEEc
Q 026547          170 LLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVP-------LGDGITICWRI  236 (237)
Q Consensus       170 ~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp-------~~~Gl~i~~~~  236 (237)
                      +|+|||+++++|+.+.+                   ..+|++++..+++|..+++|       +++|+.+++++
T Consensus       159 ~LkpgG~lv~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          159 LLRKGTVLLADNVIVPG-------------------TPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             CCCTTCEEEESCCCCCC-------------------CHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             ccCCCeEEEEeCCCCcc-------------------hHHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            99999999999998755                   35778888899999999998       79999999886

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.97  E-value=9.2e-29  Score=199.93  Aligned_cols=213  Identities=23%  Similarity=0.379  Sum_probs=165.5

Q ss_pred             CCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026547           15 LQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (237)
Q Consensus        15 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~   94 (237)
                      ..++.+++|+.+++  +..++.+.+++.++...+.+  .+.+....++..++...++.+|||+|||+|..+.++++.++ 
T Consensus         3 ~~~~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-   77 (233)
T 2gpy_A            3 LIEERLKHYLEKQI--PARDQYIEQMEREAHEQQVP--IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-   77 (233)
T ss_dssp             --CHHHHHHHHTTC--CCCCHHHHHHHHHHHHTTCC--CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-
T ss_pred             ccHHHHHHHHHHhC--CCCCHHHHHHHHHHHHcCCC--CcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-
Confidence            36778999999863  45678899999888777554  47899999999999888999999999999999999999987 


Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG  174 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g  174 (237)
                      +++|+++|+++.+++.|+++++..+..++++++.+|+.+.++....    .++||+|+++.....+..+++.+.++|+||
T Consensus        78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg  153 (233)
T 2gpy_A           78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL----YPLFDVLFIDAAKGQYRRFFDMYSPMVRPG  153 (233)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT----SCCEEEEEEEGGGSCHHHHHHHHGGGEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc----CCCccEEEECCCHHHHHHHHHHHHHHcCCC
Confidence            7899999999999999999999999877899999999887665421    268999999998888899999999999999


Q ss_pred             eEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          175 GIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       175 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      |+++++|++|.|.+.++.. .++........+++|+..+..++.+.+.++|+++|+.+++|++
T Consensus       154 G~lv~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~~  215 (233)
T 2gpy_A          154 GLILSDNVLFRGLVAETDI-EHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKRE  215 (233)
T ss_dssp             EEEEEETTTC--------------------------CTTTTCTTEEEEEECSTTCEEEEEEC-
T ss_pred             eEEEEEcCCcCCccCCccc-cccchhHHHHHHHHHHHHHHhCCCeEEEEEEcCCeEEEEEEcC
Confidence            9999999999887654321 1112223345678888899999999999999999999999863

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.82  E-value=9.5e-20  Score=143.11  Aligned_cols=132  Identities=13%  Similarity=0.107  Sum_probs=107.2

Q ss_pred             CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--CCcE
Q 026547           47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--DHKI  124 (237)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v  124 (237)
                      ...|.+.+.+..+++|..  ...++++|||+||  |++|+++|+. + +++|++||.+++..+.|+++++++|+  .++|
T Consensus         9 ~~~P~~~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I   82 (202)
T 3cvo_A            9 QMRPELTMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEV   82 (202)
T ss_dssp             CCCCCCCSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEE
T ss_pred             CCCCCccCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCce
Confidence            356777889999999987  4567899999998  6999999984 4 78999999999999999999999998  7899


Q ss_pred             EEEeccchHH--------------HHHHhhc---CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          125 NFIESEALSV--------------LDQLLKD---SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       125 ~~~~~d~~~~--------------~~~~~~~---~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      +++.+|+.+.              ++.+...   -...++||+||+|+.+.  ..++..+.++|+|||+|++||+.+++
T Consensus        83 ~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~GG~Iv~DNv~~r~  159 (202)
T 3cvo_A           83 NIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRPVTLLFDDYSQRR  159 (202)
T ss_dssp             EEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSCEEEEETTGGGCS
T ss_pred             EEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCCeEEEEeCCcCCc
Confidence            9999997543              3322110   00137899999999765  37788888999999999999987644

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.77  E-value=3e-18  Score=141.38  Aligned_cols=159  Identities=13%  Similarity=0.120  Sum_probs=123.4

Q ss_pred             ccHHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCc--------------------
Q 026547           54 TAPDAGQLMAMLLKL----VNAKKTIEIGVFTGYSLLLTALTIP----EDGQIMAIDVNR--------------------  105 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~vD~~~--------------------  105 (237)
                      +.......|..++..    ..++.|||+|++.|+++++++..++    ++.+|+++|..+                    
T Consensus        86 v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~  165 (282)
T 2wk1_A           86 IGIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHR  165 (282)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGG
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCccccccccccccccccc
Confidence            456777778777664    4588999999999999999987763    267999999642                    


Q ss_pred             ------hHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-cCcHHHHHHHHccCCCCeEE
Q 026547          106 ------ETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-VNYWNYHERLMKLLKVGGIA  177 (237)
Q Consensus       106 ------~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~l  177 (237)
                            ..++.+++++++.|+. ++|+++.|++.+.++.+     ..++||+||+|++. ..+..+++.+.++|+|||+|
T Consensus       166 ~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~-----~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiI  240 (282)
T 2wk1_A          166 RNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTA-----PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYV  240 (282)
T ss_dssp             GHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTC-----CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhC-----CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEE
Confidence                  1467799999999984 89999999999988764     13689999999986 44678899999999999999


Q ss_pred             EEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEE
Q 026547          178 VYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWR  235 (237)
Q Consensus       178 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~  235 (237)
                      ++||+.|.     +         ..++++++|.+..    ++...++++..+..+-+|
T Consensus       241 v~DD~~~~-----~---------G~~~Av~Ef~~~~----~i~~~i~~~~~~~v~~rk  280 (282)
T 2wk1_A          241 IVDDYMMC-----P---------PCKDAVDEYRAKF----DIADELITIDRDGVYWQR  280 (282)
T ss_dssp             EESSCTTC-----H---------HHHHHHHHHHHHT----TCCSCCEECSSSCEEEEC
T ss_pred             EEcCCCCC-----H---------HHHHHHHHHHHhc----CCceEEEEecCEEEEEEe
Confidence            99998541     1         2245666665443    456667788877666665

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.74  E-value=9.1e-18  Score=140.71  Aligned_cols=149  Identities=15%  Similarity=0.210  Sum_probs=114.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh--cCC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK--AGV-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++|||||||+|..+.+++++.+ ..+|+++|+++.+++.|++++..  .++ .++++++.+|+.++++..      
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------  165 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------  165 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------
Confidence            35678999999999999999998754 67999999999999999999876  344 468999999998877642      


Q ss_pred             CCceeEEEEeCCCc-------CcHHHHHHHHccCCCCeEEEEeCc-CCCCcccCCCCCCCccccchHHHHHHHHHHhhcC
Q 026547          145 EGSFDYAFVDADKV-------NYWNYHERLMKLLKVGGIAVYDNT-LWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADD  216 (237)
Q Consensus       145 ~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  216 (237)
                      .++||+|++|....       ...++++.+.++|+|||++++++. .|..             ......+.++.+.+..+
T Consensus       166 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-------------~~~~~~~~~~l~~~f~~  232 (304)
T 2o07_A          166 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH-------------LDLIKEMRQFCQSLFPV  232 (304)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC-------------HHHHHHHHHHHHHHCSE
T ss_pred             CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccc-------------hHHHHHHHHHHHHhCCC
Confidence            47899999987542       235789999999999999999873 3321             12345677777777666


Q ss_pred             CCceEEeeec---C-CceEEEEEc
Q 026547          217 PRIQLSHVPL---G-DGITICWRI  236 (237)
Q Consensus       217 ~~~~~~~lp~---~-~Gl~i~~~~  236 (237)
                      ..+....+|.   + .|+.++.+.
T Consensus       233 v~~~~~~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          233 VAYAYCTIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceeEEEEeccccCcceEEEEEeCC
Confidence            6666677775   3 588888753

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.73  E-value=1.9e-17  Score=139.19  Aligned_cols=150  Identities=18%  Similarity=0.211  Sum_probs=110.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GV-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++|||||||+|..+.+++++.+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..      
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------
Confidence            45678999999999999999998754 689999999999999999998654  33 468999999998877642      


Q ss_pred             CCceeEEEEeCCCc------Cc-HHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCC
Q 026547          145 EGSFDYAFVDADKV------NY-WNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDP  217 (237)
Q Consensus       145 ~~~~D~i~id~~~~------~~-~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  217 (237)
                      .++||+|++|....      .+ .++++.+.++|+|||++++++..    ...   .     ......+.++.+.+..+.
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~----~~~---~-----~~~~~~~~~~l~~vF~~v  246 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES----VWL---H-----LPLIAHLVAFNRKIFPAV  246 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCC----TTT---C-----HHHHHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC----ccc---C-----HHHHHHHHHHHHHHCCcc
Confidence            47899999986321      12 68899999999999999998621    100   0     122445556666665555


Q ss_pred             CceEEeeec---CC-ceEEEEEc
Q 026547          218 RIQLSHVPL---GD-GITICWRI  236 (237)
Q Consensus       218 ~~~~~~lp~---~~-Gl~i~~~~  236 (237)
                      .+....+|.   |+ |+.++.++
T Consensus       247 ~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          247 TYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEECTTSGGGEEEEEEEESS
T ss_pred             eEEEEEecCcCCCceEEEEEeCC
Confidence            666677775   44 88888764

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.73  E-value=2.3e-16  Score=124.82  Aligned_cols=118  Identities=17%  Similarity=0.138  Sum_probs=98.5

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+.....+.......++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|+++++..++.++++++++|+.+
T Consensus        39 ~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           39 TKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPA  115 (204)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTG
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhh
Confidence            44555555556666777889999999999999999986   579999999999999999999999987689999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .++.       ..+||+|+++... ... +++.+.+.|+|||.+++....
T Consensus       116 ~~~~-------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          116 ALAD-------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             GGTT-------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             hccc-------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            5542       3689999988743 444 999999999999999997654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.72  E-value=1.6e-17  Score=134.46  Aligned_cols=116  Identities=21%  Similarity=0.326  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      +....++..++...++.+|||||||+|+++..+++.   +.++++|++||+++.+++.|+      +..++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            778888888888778899999999999999999987   334789999999999998877      22357999999987


Q ss_pred             HH--HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHc-cCCCCeEEEEeCc
Q 026547          133 SV--LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMK-LLKVGGIAVYDNT  182 (237)
Q Consensus       133 ~~--~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~-~L~~gG~lv~~~~  182 (237)
                      +.  ++..     ...+||+|+++..+..+..+++.+.+ .|+|||+++++++
T Consensus       141 ~~~~l~~~-----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhh-----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            74  3322     12479999999888788889999997 9999999999886

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.72  E-value=5.5e-17  Score=134.31  Aligned_cols=107  Identities=16%  Similarity=0.189  Sum_probs=92.5

Q ss_pred             HHHhhcCCCEEEEEcccccHHH-HHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSL-LLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~-~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      .++...++.+|||||||+|..+ +.+++ .+ +++|+++|+++++++.|+++++..|+ ++++++++|+.+. +      
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~-~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~------  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSH-VY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D------  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHH-TT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G------
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHH-cc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C------
Confidence            4567788999999999998765 44554 34 78999999999999999999999998 7899999999875 2      


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                        .++||+||+.+...+...+++.+.+.|+|||.+++.+.
T Consensus       186 --d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 --GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             --GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             --CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence              37999999988777788999999999999999999874

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.72  E-value=5.4e-17  Score=128.01  Aligned_cols=121  Identities=18%  Similarity=0.187  Sum_probs=101.9

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ........+.......++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++..++ ++++++++|+.+
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  101 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPE  101 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhh
Confidence            3455545555555667788999999999999999999876 78999999999999999999999887 679999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .++.       .++||+|+++........+++.+.+.|+|||.+++....
T Consensus       102 ~~~~-------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          102 GLDD-------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TCTT-------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hhhc-------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            6442       278999999987668889999999999999999997543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.71  E-value=1.8e-16  Score=126.17  Aligned_cols=168  Identities=18%  Similarity=0.120  Sum_probs=115.3

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC----cEEEEec
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH----KINFIES  129 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~  129 (237)
                      ..+...+.+..++...++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...++.+    +++++++
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS   91 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC
Confidence            4455566666666667889999999999999999998765 5799999999999999999998777654    7999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCCCccc--CCC--CCCCcccc
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWGGTVA--MSE--EQVPDHLR  200 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~--~~~--~~~~~~~~  200 (237)
                      |+.....       ..++||+|++......     ...+++.+.+.|+|||++++......+...  .+.  ...+.+..
T Consensus        92 d~~~~~~-------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (219)
T 3jwg_A           92 SLVYRDK-------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRF  164 (219)
T ss_dssp             CSSSCCG-------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTT
T ss_pred             ccccccc-------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCcee
Confidence            9844311       1378999998754322     247899999999999987764332111111  000  00011111


Q ss_pred             c-hHHHHHHHHHHhhcCCCceEEeeecCCc
Q 026547          201 G-GRQATLDLNRSLADDPRIQLSHVPLGDG  229 (237)
Q Consensus       201 ~-~~~~~~~~~~~l~~~~~~~~~~lp~~~G  229 (237)
                      . ....++++.+.+...-+|+....+++++
T Consensus       165 ~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          165 EWTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             SBCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             eecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            1 2344566666666666888888876543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.71  E-value=2.2e-16  Score=125.60  Aligned_cols=168  Identities=15%  Similarity=0.127  Sum_probs=116.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC----cEEEEec
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH----KINFIES  129 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~  129 (237)
                      ..+...+.+..+....++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...++..    +++++++
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~   91 (217)
T 3jwh_A           13 LNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG   91 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC
Confidence            3455566666666777889999999999999999998655 5799999999999999999998777653    7999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCCCCccc--CCC--CCCCcccc
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLWGGTVA--MSE--EQVPDHLR  200 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~--~~~--~~~~~~~~  200 (237)
                      |+.....       ..++||+|++.....     ....+++.+.+.|+|||++++......+...  .+.  ...+.+..
T Consensus        92 d~~~~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (217)
T 3jwh_A           92 ALTYQDK-------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRF  164 (217)
T ss_dssp             CTTSCCG-------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCS
T ss_pred             Ccccccc-------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccccccccccccc
Confidence            9743311       137899999876433     2357899999999999988775432110000  000  00011111


Q ss_pred             c-hHHHHHHHHHHhhcCCCceEEeeecCCc
Q 026547          201 G-GRQATLDLNRSLADDPRIQLSHVPLGDG  229 (237)
Q Consensus       201 ~-~~~~~~~~~~~l~~~~~~~~~~lp~~~G  229 (237)
                      . ....++++.+.+....+|.....++++.
T Consensus       165 ~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          165 EWTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             CBCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             ccCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            1 2345666777777777899888876643

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.71  E-value=6.2e-16  Score=120.50  Aligned_cols=120  Identities=10%  Similarity=0.072  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           56 PDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        56 ~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .....++..+...  .++.+|||+|||+|..++.++.. + ..+|+++|+++.+++.++++++..++ ++++++++|+.+
T Consensus        28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  104 (189)
T 3p9n_A           28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAA  104 (189)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHH
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHH
Confidence            3334444444443  57789999999999999987764 2 56899999999999999999999988 679999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC----cHHHHHHHHc--cCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN----YWNYHERLMK--LLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~----~~~~~~~~~~--~L~~gG~lv~~~~~  183 (237)
                      ....+     ..++||+|+++.....    ....++.+.+  +|+|||++++....
T Consensus       105 ~~~~~-----~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          105 VVAAG-----TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             HHHHC-----CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             HHhhc-----cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            76543     1478999999865443    5677888888  99999999997644

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.70  E-value=1.2e-16  Score=122.92  Aligned_cols=117  Identities=19%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ....+.......++.+|||+|||+|..+..+++..+ +.+|+++|+++.+++.++++++..+..+++ ++.+|+.+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~   90 (178)
T 3hm2_A           13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDD   90 (178)
T ss_dssp             HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGG
T ss_pred             HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhc
Confidence            333444444556677999999999999999999876 789999999999999999999999987678 888998765543


Q ss_pred             HhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .      .++||+|++...... ..+++.+.+.|+|||.+++....
T Consensus        91 ~------~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           91 V------PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             C------CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             c------CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence            1      378999998876544 77899999999999999987654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.70  E-value=2.8e-16  Score=128.90  Aligned_cols=118  Identities=15%  Similarity=0.186  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           57 DAGQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        57 ~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ...+++..++.  ..++.+|||+|||+|..+..+++.++ ++.+|+|||+++.+++.|+++++..+...+++++++|+.+
T Consensus        55 ~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~  134 (261)
T 4gek_A           55 NIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  134 (261)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence            33444555554  34677999999999999999998764 3679999999999999999999999888889999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .         +.++||+|++...-..     ...+++++.+.|+|||.+++.+..
T Consensus       135 ~---------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          135 I---------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             C---------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             c---------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            5         1378999988654322     246799999999999999987654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.69  E-value=1.6e-16  Score=122.36  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+....++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++..++.++++++.+|+.+.++.
T Consensus        19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (177)
T 2esr_A           19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC   96 (177)
T ss_dssp             HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence            3333433333557789999999999999999886 3 5699999999999999999999988877899999999887654


Q ss_pred             HhhcCCCCCceeEEEEeCCC--cCcHHHHHHHH--ccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDADK--VNYWNYHERLM--KLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~~  183 (237)
                      .      .++||+|+++...  ....+.++.+.  +.|+|||++++....
T Consensus        97 ~------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A           97 L------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             B------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             h------cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            3      3679999998653  33456777776  899999999997544

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.69  E-value=3e-16  Score=132.09  Aligned_cols=106  Identities=16%  Similarity=0.210  Sum_probs=89.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--C-C-CCcEEEEeccchHHHHHHhhcCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--G-V-DHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~-~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..++++|||||||+|..+.++++..+ ..+|+++|+++.+++.|++++...  + + .++++++.+|+.++++..     
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----
Confidence            45778999999999999999998754 679999999999999999998652  2 2 468999999998876643     


Q ss_pred             CCCceeEEEEeCCCcC----------cHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVN----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       .++||+|++|.....          ..++++.+.+.|+|||++++.
T Consensus       149 -~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  194 (314)
T 1uir_A          149 -EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (314)
T ss_dssp             -CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence             478999999975433          478999999999999999986

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.68  E-value=4.6e-16  Score=126.66  Aligned_cols=121  Identities=21%  Similarity=0.219  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH
Q 026547           57 DAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD  136 (237)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (237)
                      ....++..+....++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.+++++...++.++++++++|+.+.. 
T Consensus        33 ~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  109 (257)
T 3f4k_A           33 ATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-  109 (257)
T ss_dssp             HHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-
T ss_pred             HHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-
Confidence            3344444444455678999999999999999999875  3999999999999999999999999888999999986541 


Q ss_pred             HHhhcCCCCCceeEEEEeCCCc--CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          137 QLLKDSENEGSFDYAFVDADKV--NYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                            ...++||+|++.....  ....+++.+.++|+|||.+++.+..|..
T Consensus       110 ------~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  155 (257)
T 3f4k_A          110 ------FQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFT  155 (257)
T ss_dssp             ------SCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred             ------CCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence                  1247999999875432  4678999999999999999998866533

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.68  E-value=5.7e-16  Score=119.97  Aligned_cols=112  Identities=14%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|+++++..++.++++++++|+.+.++.+...   .+
T Consensus        41 ~~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~  115 (187)
T 2fhp_A           41 PYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEE---KL  115 (187)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT---TC
T ss_pred             hhcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhc---CC
Confidence            3446789999999999999988873 2 46999999999999999999999888778999999998876644221   47


Q ss_pred             ceeEEEEeCC--CcCcHHHHHHH--HccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDAD--KVNYWNYHERL--MKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~  183 (237)
                      +||+|+++..  .......++.+  .++|+|||++++....
T Consensus       116 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          116 QFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             CEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            8999999865  23456777777  7889999999986543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.68  E-value=6.8e-16  Score=127.94  Aligned_cols=148  Identities=11%  Similarity=0.089  Sum_probs=106.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CC--------CCcEEEEeccchHHHH
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GV--------DHKINFIESEALSVLD  136 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~~~  136 (237)
                      ...++++|||||||+|..+..++++ + ..+|+++|+++.+++.|++++ ..  ++        .++++++.+|+.++++
T Consensus        72 ~~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           72 AHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             hCCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc
Confidence            3456789999999999999999987 5 789999999999999999998 44  32        4689999999988765


Q ss_pred             HHhhcCCCCCceeEEEEeCCCc-----C--cHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHH
Q 026547          137 QLLKDSENEGSFDYAFVDADKV-----N--YWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDL  209 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  209 (237)
                      .       .++||+|++|....     .  ..++++.+.+.|+|||+++++....    ..   .     ......+.+.
T Consensus       149 ~-------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~----~~---~-----~~~~~~~~~~  209 (281)
T 1mjf_A          149 N-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV----YL---F-----TDELISAYKE  209 (281)
T ss_dssp             H-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET----TT---S-----HHHHHHHHHH
T ss_pred             c-------cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc----cc---C-----HHHHHHHHHH
Confidence            3       27899999997531     1  4789999999999999999973211    00   0     1122333444


Q ss_pred             HHHhhcCCCceEEeeecCC---ceEEEEEc
Q 026547          210 NRSLADDPRIQLSHVPLGD---GITICWRI  236 (237)
Q Consensus       210 ~~~l~~~~~~~~~~lp~~~---Gl~i~~~~  236 (237)
                      .+.+..+..+....+|..+   |+.++.+.
T Consensus       210 l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          210 MKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            4444333344445567654   47777764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.67  E-value=1.3e-15  Score=133.86  Aligned_cols=123  Identities=15%  Similarity=0.228  Sum_probs=102.2

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......++..++...++.+|||+|||+|..++.++..++..++|+++|+++.+++.+++++++.|+.  +.++++|+.+
T Consensus        85 vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~  162 (464)
T 3m6w_A           85 IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRA  162 (464)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHH
T ss_pred             EECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHH
Confidence            34444556666677778889999999999999999998875689999999999999999999999985  9999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .....      .++||+|++|.+.+.                         ...+++.+.++|+|||.+++..+.+
T Consensus       163 l~~~~------~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          163 LAEAF------GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             HHHHH------CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             hhhhc------cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            65433      478999999865421                         1567888889999999999988765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.67  E-value=5.5e-16  Score=131.34  Aligned_cols=113  Identities=22%  Similarity=0.354  Sum_probs=92.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GV-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++|||||||+|..+..++++.+ ..+|+++|+++.+++.|++++...  ++ .++++++++|+.++++..     .
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~  191 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  191 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----c
Confidence            35678999999999999999998754 679999999999999999998753  44 357999999998876643     1


Q ss_pred             CCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe-CcCCCC
Q 026547          145 EGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD-NTLWGG  186 (237)
Q Consensus       145 ~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~-~~~~~g  186 (237)
                      .++||+|++|.....       ..++++.+.++|+|||+++++ +..|.+
T Consensus       192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~  241 (334)
T 1xj5_A          192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLH  241 (334)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTC
T ss_pred             CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence            368999999864211       478999999999999999997 555543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.67  E-value=9.1e-16  Score=124.80  Aligned_cols=122  Identities=18%  Similarity=0.218  Sum_probs=99.3

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+.....+...+...++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.++++++..++.++++++++|+.+
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~   97 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG   97 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh
Confidence            344444555555566678899999999999999999875  469999999999999999999999987789999999977


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      ...        .++||+|++....   .+...+++++.++|+|||.+++.+..+.
T Consensus        98 ~~~--------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~  144 (256)
T 1nkv_A           98 YVA--------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR  144 (256)
T ss_dssp             CCC--------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred             CCc--------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            521        3789999986432   3467899999999999999999776553

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.67  E-value=6.7e-16  Score=126.68  Aligned_cols=118  Identities=16%  Similarity=0.206  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+....++.+|||||||+|..+..+++. + ..+|+++|+++.+++.++++++..++.++++++++|+.+..  
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--  109 (267)
T 3kkz_A           34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--  109 (267)
T ss_dssp             HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--
T ss_pred             HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--
Confidence            3333333333556789999999999999999987 3 67999999999999999999999999888999999986642  


Q ss_pred             HhhcCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          138 LLKDSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                           ...++||+|++....  -....+++.+.++|+|||.+++.+..|
T Consensus       110 -----~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          110 -----FRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             -----CCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             -----CCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeee
Confidence                 124789999987542  246788999999999999999988765

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.67  E-value=1.4e-15  Score=117.88  Aligned_cols=120  Identities=21%  Similarity=0.217  Sum_probs=100.9

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .........+...+...++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++++..+..++++++++|+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP   92 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHH
Confidence            3455566666666677788899999999999999998864   6999999999999999999999888678999999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +.++.       .++||+|+++....+...+++.+.+.|+|||.+++...
T Consensus        93 ~~~~~-------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           93 EALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             HHHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             Hhccc-------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            74432       26899999987767788999999999999999998754

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.66  E-value=2.1e-15  Score=122.04  Aligned_cols=105  Identities=14%  Similarity=0.158  Sum_probs=88.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..++.++...+ +.+|+++|+++.+++.++++++..++. +++++++|+.+.....    ...++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~----~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc----cccCCc
Confidence            4678999999999999999997655 789999999999999999999998886 4999999997753100    013789


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|++... .....+++.+.++|+|||.+++.
T Consensus       143 D~V~~~~~-~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          143 DIVTARAV-ARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEECC-SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEecc-CCHHHHHHHHHHhcCCCCEEEEE
Confidence            99999874 56788999999999999999885

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=3.8e-16  Score=126.25  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH
Q 026547           59 GQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD  136 (237)
Q Consensus        59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (237)
                      ..++..++..  .++.+|||||||+|.++.++++..+  .+|++||+++.+++.|+++.+..+  .+++++.+|+.+...
T Consensus        47 ~~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~  122 (236)
T 3orh_A           47 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP  122 (236)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG
T ss_pred             HHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcc
Confidence            3444444443  4567999999999999999988644  589999999999999999887766  368899999988765


Q ss_pred             HHhhcCCCCCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          137 QLLKDSENEGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      .+     ..++||.|+.|....        +...+++++.++|||||++++.+....+
T Consensus       123 ~~-----~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~  175 (236)
T 3orh_A          123 TL-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  175 (236)
T ss_dssp             GS-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             cc-----cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCch
Confidence            54     357899999885422        2457889999999999999998765433

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.66  E-value=1.1e-15  Score=126.33  Aligned_cols=106  Identities=15%  Similarity=0.188  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CC-CCcEEEEeccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GV-DHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      .++++|||||||+|..+.++++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.++++..      .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------~  146 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------E  146 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------C
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------C
Confidence            4678999999999999999998644 679999999999999999998653  33 468999999999877642      4


Q ss_pred             CceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       147 ~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          147 NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            78999999865321       2689999999999999999974

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.65  E-value=1.1e-15  Score=124.46  Aligned_cols=118  Identities=20%  Similarity=0.273  Sum_probs=100.2

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +.+.....+...+...++.+|||+|||+|..+..+++.+.+..+|+++|+++++++.|+++++..++.++++++++|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            45666666777777778899999999999999999998544789999999999999999999999988889999999986


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++        .++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       157 ~~~--------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          157 GIE--------EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             CCC--------CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ccC--------CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            532        478999999754  44578999999999999999864

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.65  E-value=3.4e-15  Score=123.28  Aligned_cols=125  Identities=20%  Similarity=0.204  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      .....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+. +++++++|+.+..
T Consensus        69 d~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~  147 (274)
T 3ajd_A           69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYK  147 (274)
T ss_dssp             CSGGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHH
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcc
Confidence            334445555666677889999999999999999998764489999999999999999999999975 6999999998765


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCc---------------------CcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKV---------------------NYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~---------------------~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ..+...   .++||+|++|.+..                     ....+++.+.++|+|||.+++..+..
T Consensus       148 ~~~~~~---~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          148 DYLLKN---EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHHHHT---TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhhhhc---cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            432111   36899999995432                     23678899999999999999987654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.65  E-value=1.5e-15  Score=121.31  Aligned_cols=105  Identities=21%  Similarity=0.309  Sum_probs=88.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++..|||||||+|..+..+|+..+ +.+|+|||+++.+++.|+++++..++.+ ++++++|+.+.++...    ..++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMI----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHS----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHc----CCCChh
Confidence            567999999999999999999887 7899999999999999999999988764 9999999998876532    258999


Q ss_pred             EEEEeCCCc-----C------cHHHHHHHHccCCCCeEEEEe
Q 026547          150 YAFVDADKV-----N------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       150 ~i~id~~~~-----~------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .|++.....     .      ...+++.+.+.|+|||++++.
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            999873211     1      136999999999999999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.65  E-value=3.1e-15  Score=125.92  Aligned_cols=123  Identities=21%  Similarity=0.254  Sum_probs=100.5

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......++..+....++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+. +++++++|+.+
T Consensus       102 ~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~  180 (315)
T 1ixk_A          102 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLH  180 (315)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGG
T ss_pred             EeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhh
Confidence            34455555666667778889999999999999999998865689999999999999999999999985 59999999977


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ... .      .++||+|++|...+.                         ...+++.+.++|+|||.+++.++..
T Consensus       181 ~~~-~------~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          181 IGE-L------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             GGG-G------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccc-c------cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            543 1      368999999865321                         1478888999999999999987754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.65  E-value=4e-15  Score=113.42  Aligned_cols=106  Identities=13%  Similarity=0.145  Sum_probs=87.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+++..+   +|+++|+++.+++.++++++..++  +++++++|+.+.++.....   .++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CCceE
Confidence            778999999999999999998643   599999999999999999998887  6999999998876654321   25899


Q ss_pred             EEEEeCCC-cCcHHHHHHHH--ccCCCCeEEEEeCcC
Q 026547          150 YAFVDADK-VNYWNYHERLM--KLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~~~-~~~~~~~~~~~--~~L~~gG~lv~~~~~  183 (237)
                      +|+++... ....+.++.+.  ++|+|||++++....
T Consensus       113 ~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            99998543 45567778887  999999999986543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.65  E-value=1.3e-15  Score=120.04  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSV  134 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~  134 (237)
                      .....++..+....++.+|||+|||+|..++.++...  ..+|+++|+++.+++.|+++++..++. ++++++++|+.+.
T Consensus        39 ~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~  116 (201)
T 2ift_A           39 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF  116 (201)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHH
Confidence            3333444444433477899999999999999876642  359999999999999999999998874 5799999999876


Q ss_pred             HHHHhhcCCCCCc-eeEEEEeCC--CcCcHHHHHHH--HccCCCCeEEEEeCcCC
Q 026547          135 LDQLLKDSENEGS-FDYAFVDAD--KVNYWNYHERL--MKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       135 ~~~~~~~~~~~~~-~D~i~id~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~~  184 (237)
                      ++.+     ..++ ||+|+++..  .......++.+  .++|+|||++++.....
T Consensus       117 ~~~~-----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          117 LKQP-----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             TTSC-----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             HHhh-----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            5421     1367 999999876  23356777888  56899999999876543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.65  E-value=2.9e-15  Score=131.45  Aligned_cols=124  Identities=15%  Similarity=0.190  Sum_probs=102.6

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......++..++...++.+|||+|||+|..++++|..++..++|+++|+++.+++.+++++++.|+. ++.++++|+.+
T Consensus        89 vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~  167 (456)
T 3m4x_A           89 SQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAE  167 (456)
T ss_dssp             ECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHH
T ss_pred             EECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHH
Confidence            44455566666777778899999999999999999988775689999999999999999999999986 59999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .....      .++||.|++|.+.+.                         ...+++.+.++|+|||.|+...+.+
T Consensus       168 l~~~~------~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          168 LVPHF------SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HHHHH------TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hhhhc------cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            75444      478999999976322                         1267888889999999999988765

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.64  E-value=6.8e-16  Score=119.68  Aligned_cols=103  Identities=13%  Similarity=0.103  Sum_probs=83.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|+++++..++ +++++++++..+... .     ..++|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~-~-----~~~~f   90 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDH-Y-----VREPI   90 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGG-T-----CCSCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHh-h-----ccCCc
Confidence            46789999999999999999985   67999999999999999999999888 679999977755422 1     14789


Q ss_pred             eEEEEeC-CC-----------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          149 DYAFVDA-DK-----------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       149 D~i~id~-~~-----------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |+|+++. ..           ......++.+.+.|+|||.+++..
T Consensus        91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            9998873 11           223467788999999999998853

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.64  E-value=1.2e-15  Score=119.39  Aligned_cols=109  Identities=11%  Similarity=0.158  Sum_probs=90.6

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|+++++..++.++++++++|+.+.....      .+
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~   92 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DC   92 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CS
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cC
Confidence            345678999999999999999999864467999999999999999999999988778999999987764322      47


Q ss_pred             ceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          147 SFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       147 ~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +||+|+++...            .....+++.+.+.|+|||.+++..
T Consensus        93 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           93 PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             CEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            89999987532            023478999999999999998865

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.64  E-value=2.7e-15  Score=125.31  Aligned_cols=116  Identities=9%  Similarity=0.074  Sum_probs=95.5

Q ss_pred             HHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           58 AGQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        58 ~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ....+..++.   ..++.+|||||||+|..+..+++..+  .+|+++|+++.+++.+++++...++.++++++.+|+.++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           57 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc
Confidence            3334444444   34667999999999999999998754  699999999999999999999999888899999999765


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcC------------cHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVN------------YWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                                .++||+|++.....+            +..+++.+.++|+|||.+++.+....
T Consensus       135 ----------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 ----------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             ----------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             ----------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence                      389999998754333            37899999999999999999887643

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.64  E-value=2.6e-15  Score=118.46  Aligned_cols=106  Identities=13%  Similarity=0.082  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..++.++...  ..+|+++|+++.+++.|+++++..++ ++++++++|+.+.++..      .++|
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~------~~~f  123 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQK------GTPH  123 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSC------CCCE
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhc------CCCC
Confidence            367899999999999999877642  24999999999999999999999887 67999999998865421      4689


Q ss_pred             eEEEEeCC--CcCcHHHHHHHHc--cCCCCeEEEEeCcC
Q 026547          149 DYAFVDAD--KVNYWNYHERLMK--LLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~--~~~~~~~~~~~~~--~L~~gG~lv~~~~~  183 (237)
                      |+|+++..  .......++.+.+  +|+|||++++....
T Consensus       124 D~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          124 NIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             CEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            99999865  3345667777765  59999999886543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=2.4e-15  Score=125.94  Aligned_cols=103  Identities=14%  Similarity=0.097  Sum_probs=86.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      +|||||||+|..+.++++.++ +.+|++||+++.+++.|++++.... .++++++++|+.+++...     ..++||+|+
T Consensus        92 rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~~~fDvIi  164 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESF-----TPASRDVII  164 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CTTCEEEEE
T ss_pred             EEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhc-----cCCCCCEEE
Confidence            999999999999999999877 6799999999999999999985432 468999999999987643     137899999


Q ss_pred             EeCCCcC-------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          153 VDADKVN-------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       153 id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|.....       ..++++.+.+.|+|||+++++..
T Consensus       165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            9853221       37899999999999999998753

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=8.4e-16  Score=125.98  Aligned_cols=120  Identities=13%  Similarity=0.167  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh---cCCCCcEEEEeccchHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK---AGVDHKINFIESEALSVL  135 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~  135 (237)
                      +-+|..++...++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.|+++++.   .++.++++++++|+.+..
T Consensus        25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~  103 (260)
T 2ozv_A           25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRA  103 (260)
T ss_dssp             HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCH
T ss_pred             HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHh
Confidence            44555555566778999999999999999999876 68999999999999999999988   888778999999998875


Q ss_pred             HHHhhcCCCCCceeEEEEeCCC---------------------cCcHHHHHHHHccCCCCeEEEE
Q 026547          136 DQLLKDSENEGSFDYAFVDADK---------------------VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~---------------------~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +.........++||+|+++.+-                     ..+..+++.+.++|+|||.+++
T Consensus       104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            4321111224789999997321                     1256788999999999999987

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.63  E-value=3.8e-15  Score=124.30  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=87.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh--cCC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK--AGV-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..  .++ .++++++++|+.+.++..      
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  160 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  160 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            34678999999999999999998754 68999999999999999999865  233 368999999998876532      


Q ss_pred             CCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++||+|++|....        ...++++.+.+.|+|||++++..
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            47899999986433        23789999999999999999974

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.63  E-value=1.7e-14  Score=126.34  Aligned_cols=160  Identities=19%  Similarity=0.209  Sum_probs=119.6

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......++..+....++.+|||+|||+|..+..++..++ +++|+++|+++.+++.++++++..|.  +++++++|+.+
T Consensus       230 ~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~  306 (429)
T 1sqg_A          230 VQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRY  306 (429)
T ss_dssp             ECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTC
T ss_pred             eeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhh
Confidence            3455566666677777888999999999999999999887 58999999999999999999999887  37899999887


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccCCCCeEEEEeCcCCCCcc
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (237)
                      ..+.+.     .++||+|++|.+.+..                         ..+++.+.++|+|||.+++.++.+... 
T Consensus       307 ~~~~~~-----~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~-  380 (429)
T 1sqg_A          307 PSQWCG-----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-  380 (429)
T ss_dssp             THHHHT-----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-
T ss_pred             chhhcc-----cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-
Confidence            654331     3689999998654220                         367888999999999999988765321 


Q ss_pred             cCCCCCCCccccchHHHHHHHHHHhhcCCCceE-----------Eeee---cCCceEEEEEcC
Q 026547          189 AMSEEQVPDHLRGGRQATLDLNRSLADDPRIQL-----------SHVP---LGDGITICWRIF  237 (237)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~lp---~~~Gl~i~~~~~  237 (237)
                           +       .   ...+...+..+++++.           .++|   -++|+.+++.+|
T Consensus       381 -----e-------n---e~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  428 (429)
T 1sqg_A          381 -----E-------N---SLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  428 (429)
T ss_dssp             -----G-------T---HHHHHHHHHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             -----h-------H---HHHHHHHHHhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEE
Confidence                 0       0   1223334455666543           4566   248999988764

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.63  E-value=5e-15  Score=114.91  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSVLD  136 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~  136 (237)
                      ..+.+...+...++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...++.+ +++++.+|+.+..+
T Consensus        40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence            3344444445557789999999999999999886   5699999999999999999999888764 59999999877532


Q ss_pred             HHhhcCCCCCceeEEEEeCCCc----CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          137 QLLKDSENEGSFDYAFVDADKV----NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~~----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                              .++||+|+++....    ....+++.+.++|+|||.+++....
T Consensus       117 --------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          117 --------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             --------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             --------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence                    37899999986532    3467889999999999999987543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.62  E-value=2.1e-15  Score=123.44  Aligned_cols=114  Identities=18%  Similarity=0.217  Sum_probs=94.7

Q ss_pred             HHHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           59 GQLMAMLLKLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      +.++..++... ++.+|||+|||+|..++.++...+  .+|+++|+++.+++.|+++++..++.++++++++|+.+....
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            55666676666 788999999999999999998754  399999999999999999999999988899999999887543


Q ss_pred             HhhcCCCCCceeEEEEeCCC-----------------------cCcHHHHHHHHccCCCCeEEEE
Q 026547          138 LLKDSENEGSFDYAFVDADK-----------------------VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~-----------------------~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +     ..++||+|+++.+-                       .....+++.+.++|+|||.+++
T Consensus       115 ~-----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 I-----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             S-----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             h-----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            2     24799999996431                       1134688999999999999998

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=3.5e-14  Score=109.14  Aligned_cols=114  Identities=21%  Similarity=0.153  Sum_probs=95.0

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ........+.......++.+|||+|||+|..+..+++  + ..+|+++|+++.+++.++++++..++ ++++++++|+.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~   94 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED   94 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc
Confidence            4455555566666667788999999999999999998  3 78999999999999999999999887 469999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .++        .++||+|+++.. .....+++.+.+.  |||.+++...
T Consensus        95 ~~~--------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           95 VLD--------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             HGG--------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             ccc--------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            332        368999999887 7778899999887  9999998764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.62  E-value=5.7e-15  Score=116.39  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.++++++..++.+ ++++++|+.+..+        .++||
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~--------~~~~D  134 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--------EPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--------CSCEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCc--------cCCcC
Confidence            478999999999999999998876 7899999999999999999999988765 9999999877531        37899


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|++.. ...+..+++.+.+.|+|||.+++.
T Consensus       135 ~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          135 GVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999754 356788999999999999999986

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.62  E-value=2.5e-15  Score=122.40  Aligned_cols=104  Identities=18%  Similarity=0.247  Sum_probs=88.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||||||+|..++.++...+ +.+|+++|+++.+++.++++++..++.+ ++++++|+.+.....    ...++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~----~~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREA----GHREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTST----TTTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhccc----ccCCCce
Confidence            467999999999999999999876 7899999999999999999999999865 999999997764210    0137899


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|++.+. .....+++.+.++|+|||.+++-
T Consensus       154 ~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          154 RAVARAV-APLCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             EEEEESS-CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence            9998864 35678999999999999998863

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.62  E-value=5e-15  Score=117.18  Aligned_cols=104  Identities=19%  Similarity=0.248  Sum_probs=89.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      .+|||+|||+|..+..+++. + +.+|+++|+++.+++.++++++..+..++++++++|+.+..       ...++||+|
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~~D~v  115 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-------IEDNYADLI  115 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-------SCTTCEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-------CCcccccEE
Confidence            39999999999999999987 4 67999999999999999999999998888999999987642       124789999


Q ss_pred             EEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          152 FVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       152 ~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ++....   .+...+++.+.+.|+|||.+++.+...
T Consensus       116 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          116 VSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             EECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            987643   445789999999999999999976543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.62  E-value=4e-15  Score=117.63  Aligned_cols=114  Identities=20%  Similarity=0.224  Sum_probs=94.1

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+.....+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++++..++. +++++.+|+.+
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  136 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQ  136 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCccc
Confidence            35666666666667778899999999999999999987   569999999999999999999998875 69999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ....       .++||+|+++.......   +.+.+.|+|||.+++.-
T Consensus       137 ~~~~-------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          137 GWQA-------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLPV  174 (210)
T ss_dssp             CCGG-------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEEE
T ss_pred             CCcc-------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEEE
Confidence            5432       37999999987655544   35789999999998853

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.61  E-value=8.9e-15  Score=116.32  Aligned_cols=105  Identities=14%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||||||+|..+..+++..+ +.+|+|+|+++.+++.|+++++..++. +++++++|+.+....+     ..++|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEV  109 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCc
Confidence            3567999999999999999999876 789999999999999999999988874 5999999998743222     24789


Q ss_pred             eEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |.|++......           ...+++.+.+.|+|||.+++.
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            99988643211           468899999999999999885

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.61  E-value=9.8e-15  Score=128.60  Aligned_cols=125  Identities=18%  Similarity=0.243  Sum_probs=100.2

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......++..+....++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..|+. +++++++|+.+
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~  321 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARK  321 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTC
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhh
Confidence            33445556666667777889999999999999999998874489999999999999999999999985 59999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ..+.+     ..++||+|++|.+.+..                         ..+++.+.++|+|||.+++.++.+
T Consensus       322 ~~~~~-----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          322 APEII-----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             CSSSS-----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cchhh-----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            53211     12679999998654221                         467889999999999999987764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.61  E-value=6.2e-15  Score=117.10  Aligned_cols=105  Identities=17%  Similarity=0.309  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.|++++...++ ++++++++|+.+....+     ..++|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-----~~~~~  112 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYF-----EDGEI  112 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTS-----CTTCC
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhc-----CCCCC
Confidence            3567999999999999999999887 78999999999999999999999887 57999999997742212     24689


Q ss_pred             eEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|+++....           ....+++.+.+.|+|||.+++.
T Consensus       113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            9999885432           2367999999999999999885

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.61  E-value=1.2e-14  Score=114.55  Aligned_cols=113  Identities=14%  Similarity=0.186  Sum_probs=92.6

Q ss_pred             HHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           59 GQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ..++..+.. ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++...+..+ ++++++|+.+..  
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--  122 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--  122 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--
Confidence            334444433 346789999999999999998874 3 5699999999999999999999988866 999999987642  


Q ss_pred             HhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                             .++||+|+++........+++.+.++|+|||.+++.+..
T Consensus       123 -------~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          123 -------DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             -------CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             -------CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence                   479999999877666778888888999999999996543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.61  E-value=2.5e-14  Score=113.57  Aligned_cols=113  Identities=18%  Similarity=0.249  Sum_probs=93.6

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ......++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...++. +++++.+|+.+..       .
T Consensus        31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~  102 (219)
T 3dh0_A           31 KEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP-------L  102 (219)
T ss_dssp             HHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS-------S
T ss_pred             HHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC-------C
Confidence            3445667789999999999999999998744689999999999999999999988875 6999999987642       1


Q ss_pred             CCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          144 NEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       144 ~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ..++||+|++....   .+...+++.+.++|+|||.+++.+...
T Consensus       103 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  146 (219)
T 3dh0_A          103 PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKK  146 (219)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecc
Confidence            24789999987543   345789999999999999999976554

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.60  E-value=3.8e-14  Score=125.45  Aligned_cols=123  Identities=14%  Similarity=0.208  Sum_probs=99.1

Q ss_pred             cHHHHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLLKLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      ......+...++...  ++.+|||+|||+|..+.+++..++..++|+++|+++.+++.+++++++.|+. +++++++|+.
T Consensus       100 Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~  178 (479)
T 2frx_A          100 QEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGR  178 (479)
T ss_dssp             CCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCST
T ss_pred             ECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHH
Confidence            344444555556666  7889999999999999999998865689999999999999999999999985 5999999998


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcC-------------------------cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVN-------------------------YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ++....      .++||.|++|.+.+.                         ...+++.+.++|+|||.|++..+.+
T Consensus       179 ~~~~~~------~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          179 VFGAAV------PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             THHHHS------TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             Hhhhhc------cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            764322      478999999865321                         1356888889999999999988765

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.60  E-value=2.9e-14  Score=115.08  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=84.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh------cCCCCcEEEEeccchHHHHHHhhcC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK------AGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      .++.+|||||||+|..+..+|+..+ +..|+|||+++.+++.|+++++.      .+. .+++++++|+.+.++...   
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~---  119 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF---  119 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC---
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC---
Confidence            4566899999999999999999876 78999999999999999988764      233 469999999987555431   


Q ss_pred             CCCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547          143 ENEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       ..++||.|++......           ...+++.+.+.|+|||.+++.
T Consensus       120 -~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          120 -YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             -CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence             2478999988643221           257999999999999999874

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.60  E-value=5.3e-15  Score=118.17  Aligned_cols=114  Identities=11%  Similarity=0.082  Sum_probs=93.8

Q ss_pred             HHHHHHhhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           61 LMAMLLKLVN-AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        61 ~l~~l~~~~~-~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      .|..++...+ +.+|||||||+|+.++.+++..+ ..+|+++|+++.+++.|+++++.+|+.++++++.+|..+.++.  
T Consensus         5 RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~--   81 (225)
T 3kr9_A            5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE--   81 (225)
T ss_dssp             HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG--
T ss_pred             HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc--
Confidence            4566666554 45999999999999999998765 6799999999999999999999999988999999999776431  


Q ss_pred             hcCCCCCceeEEEEeCC-CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          140 KDSENEGSFDYAFVDAD-KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                           .++||+|++.+. ......+++.+...|+++|.+|+...
T Consensus        82 -----~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 -----TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             -----GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             -----CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence                 137999987543 33357888999999999999999654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.59  E-value=1.2e-14  Score=122.70  Aligned_cols=107  Identities=19%  Similarity=0.273  Sum_probs=88.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh--cCC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK--AGV-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++..  .++ .++++++++|+.+.++..      
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------
Confidence            45678999999999999999998654 68999999999999999999865  233 367999999998876543      


Q ss_pred             CCceeEEEEeCCCc-----C-c-HHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKV-----N-Y-WNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~-----~-~-~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++||+|++|....     . + .++++.+.+.|+|||++++..
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            47899999986321     1 1 789999999999999999964

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.59  E-value=9.5e-14  Score=117.59  Aligned_cols=116  Identities=13%  Similarity=0.192  Sum_probs=92.5

Q ss_pred             HHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHHHHHHh
Q 026547           62 MAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSVLDQLL  139 (237)
Q Consensus        62 l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~  139 (237)
                      +..++. ..++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.|+++++..++.+ +++++++|+.++++.+.
T Consensus       144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~  220 (332)
T 2igt_A          144 LKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  220 (332)
T ss_dssp             HHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH
Confidence            444443 345679999999999999999984   4499999999999999999999999876 59999999999876543


Q ss_pred             hcCCCCCceeEEEEeCCC-------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          140 KDSENEGSFDYAFVDADK-------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..   .++||+|++|.+.             ..+..+++.+.++|+|||++++....
T Consensus       221 ~~---~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          221 RR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             hc---CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            22   3689999997642             12467888889999999997775543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.59  E-value=1.9e-14  Score=118.19  Aligned_cols=108  Identities=15%  Similarity=0.257  Sum_probs=91.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.++++++..++.++++++.+|+.+..       ...++
T Consensus        59 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~  129 (273)
T 3bus_A           59 VRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-------FEDAS  129 (273)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-------SCTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-------CCCCC
Confidence            3467899999999999999999864  47999999999999999999999998888999999987641       22478


Q ss_pred             eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ||+|++...   ..+...+++.+.++|+|||.+++.+...
T Consensus       130 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          130 FDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             EEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             ccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence            999997654   3345789999999999999999987654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.58  E-value=6.7e-15  Score=121.75  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..++.+++..+ . +|+++|+++.+++.|+++++.+++.++++++++|+.+...        .++|
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~f  193 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  193 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCc
Confidence            4578999999999999999998754 2 8999999999999999999999998889999999988743        3789


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|+++... ....+++.+.++|+|||++++....
T Consensus       194 D~Vi~~~p~-~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          194 DRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cEEEECCch-hHHHHHHHHHHHCCCCeEEEEEEee
Confidence            999998653 3467889999999999999997654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.58  E-value=2.2e-14  Score=114.77  Aligned_cols=120  Identities=22%  Similarity=0.307  Sum_probs=91.8

Q ss_pred             cHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHhcCC----CCcE
Q 026547           55 APDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQIMAIDVNRETYEIGLPVIKKAGV----DHKI  124 (237)
Q Consensus        55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v  124 (237)
                      .+.....+..++  ...++.+|||+|||+|+.+..+++...    +.++|+++|+++.+++.|+++++..++    .+++
T Consensus        63 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  142 (227)
T 2pbf_A           63 APHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF  142 (227)
T ss_dssp             CHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence            444444444444  356678999999999999999998764    467999999999999999999998873    3579


Q ss_pred             EEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          125 NFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       125 ~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +++.+|+.+..+.....   .++||+|+++......   ++.+.+.|+|||.+++.
T Consensus       143 ~~~~~d~~~~~~~~~~~---~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          143 KIIHKNIYQVNEEEKKE---LGLFDAIHVGASASEL---PEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEEECCGGGCCHHHHHH---HCCEEEEEECSBBSSC---CHHHHHHEEEEEEEEEE
T ss_pred             EEEECChHhcccccCcc---CCCcCEEEECCchHHH---HHHHHHhcCCCcEEEEE
Confidence            99999988754110000   2789999998765543   57788999999999885

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.58  E-value=2e-14  Score=121.95  Aligned_cols=128  Identities=15%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC-------
Q 026547           47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG-------  119 (237)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------  119 (237)
                      ...+.....+.....+...+...++.+|||+|||+|..+..+++...+.++|+++|+++.+++.|+++++..+       
T Consensus        82 ~~~~~~~~~~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~  161 (336)
T 2b25_A           82 MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH  161 (336)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hcCCCcccCHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccc
Confidence            3333333556655656666677788899999999999999999875436899999999999999999998643       


Q ss_pred             ---CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          120 ---VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       120 ---~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         ..++++++++|+.+....+.     .++||+|+++....  ..+++.+.+.|+|||.+++..
T Consensus       162 ~~~~~~~v~~~~~d~~~~~~~~~-----~~~fD~V~~~~~~~--~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          162 VEEWPDNVDFIHKDISGATEDIK-----SLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             SSCCCCCEEEEESCTTCCC------------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEEE
T ss_pred             ccccCCceEEEECChHHcccccC-----CCCeeEEEECCCCH--HHHHHHHHHhcCCCcEEEEEe
Confidence               23579999999987643321     36799999976433  347899999999999998743

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.58  E-value=1.1e-14  Score=122.70  Aligned_cols=115  Identities=21%  Similarity=0.334  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      +.....+...+...++.+|||||||+|..+..+++..+..++|+++|+++++++.|+++++..|+.+ ++++.+|+.+.+
T Consensus        61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~  139 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGV  139 (317)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhcc
Confidence            3455555555566778899999999999999999886645789999999999999999999988865 999999997754


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +.       .++||+|+++.......   +.+.+.|+|||.+++..
T Consensus       140 ~~-------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          140 PE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             GG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             cc-------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            32       37899999987665544   56778999999999964

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.58  E-value=5.9e-14  Score=120.25  Aligned_cols=151  Identities=17%  Similarity=0.213  Sum_probs=103.5

Q ss_pred             cCCCEEEEEccc------ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhh
Q 026547           69 VNAKKTIEIGVF------TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G------~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~  140 (237)
                      .++.+|||||||      +|..++.+++.+.++++|+++|+++.+.         . ..++++++++|+.+.  ...+..
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dlpf~~~l~~  284 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDAEFLDRIAR  284 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEecccccchhhhhhc
Confidence            367899999999      6777777766542378999999999972         1 235799999998763  222221


Q ss_pred             cCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCeEEEEeCcCC------CCcccCCCCCCCccccchHHHHHHHHHH
Q 026547          141 DSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGGIAVYDNTLW------GGTVAMSEEQVPDHLRGGRQATLDLNRS  212 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (237)
                      .   .++||+|++++.+  .+....|++++++|||||++++.|+..      .|....     .....+....++++.+.
T Consensus       285 ~---d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~-----~~~~~tii~~lk~l~D~  356 (419)
T 3sso_A          285 R---YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADP-----QECSGTSLGLLKSLIDA  356 (419)
T ss_dssp             H---HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSST-----TCCTTSHHHHHHHHHHH
T ss_pred             c---cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccC-----CcchhHHHHHHHHHHHH
Confidence            1   2799999988654  234678999999999999999999872      222111     11224556667777766


Q ss_pred             hhcC---------CCce---EEeeecCCceEEEEEcC
Q 026547          213 LADD---------PRIQ---LSHVPLGDGITICWRIF  237 (237)
Q Consensus       213 l~~~---------~~~~---~~~lp~~~Gl~i~~~~~  237 (237)
                      +...         |.+.   ..-+.+-+++.++.|.+
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg~  393 (419)
T 3sso_A          357 IQHQELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKGR  393 (419)
T ss_dssp             HTGGGSCCCTTCCCCHHHHHEEEEEEETTEEEEEESC
T ss_pred             hcccccCCCcCCCCCccccceeEEEecCcEEEEEecc
Confidence            6532         1221   44567789999988864

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.58  E-value=5.6e-15  Score=123.01  Aligned_cols=115  Identities=15%  Similarity=0.274  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC---------------------------
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD---------------------------  121 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------------------  121 (237)
                      .++++|||||||+|..++.++..++ ..+|+++|+++.+++.|+++++..+..                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3678999999999999999999886 679999999999999999987665422                           


Q ss_pred             ------------------------------CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC---c------CcHH
Q 026547          122 ------------------------------HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK---V------NYWN  162 (237)
Q Consensus       122 ------------------------------~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~---~------~~~~  162 (237)
                                                    ++++++++|..+....+..  ...++||+|++....   .      ....
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~--~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE--AQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT--TCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcccccc--ccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                          5799999998754322211  125899999987653   1      4567


Q ss_pred             HHHHHHccCCCCeEEEEeCcCCCC
Q 026547          163 YHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       163 ~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      +++.+.++|+|||++++....|..
T Consensus       202 ~l~~~~~~LkpGG~lil~~~~~~~  225 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEPQPWSS  225 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCHHH
T ss_pred             HHHHHHHHhCCCcEEEEecCCchh
Confidence            899999999999999998766543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.58  E-value=9.1e-15  Score=121.12  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=91.9

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +....++.+|||+|||+|..+..++..++.+.+|+++|+++.+++.+++++...+.  +++++++|+.+..        .
T Consensus        17 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~--------~   86 (284)
T 3gu3_A           17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE--------L   86 (284)
T ss_dssp             TSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC--------C
T ss_pred             HhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC--------c
Confidence            33456788999999999999999999887568999999999999999999887664  7999999997642        1


Q ss_pred             CCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .++||+|++...   ..+...+++.+.+.|+|||.+++.+..
T Consensus        87 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence            378999998754   344578999999999999999987765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.57  E-value=2.4e-14  Score=118.13  Aligned_cols=119  Identities=22%  Similarity=0.346  Sum_probs=98.3

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +.+.....+...+...++.+|||+|||+|..+..+++.+.+.++|+++|+++.+++.|+++++..++.++++++.+|+.+
T Consensus        96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A           96 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  175 (277)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            34555555666666777889999999999999999998544789999999999999999999998886789999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .++        .++||+|+++..  ....+++.+.+.|+|||.+++...
T Consensus       176 ~~~--------~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          176 GFD--------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CCS--------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccc--------CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence            622        368999999753  445788999999999999998653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.57  E-value=3.2e-14  Score=116.08  Aligned_cols=111  Identities=13%  Similarity=0.223  Sum_probs=89.8

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +...+...++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++++..+.. +++++++|+.+..      
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~------   98 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMP------   98 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCC------
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCC------
Confidence            3334455678899999999999999999864   49999999999999999999888864 6999999986641      


Q ss_pred             CCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          142 SENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       +..++||+|++....   .+...+++++.+.|+|||.+++.+..
T Consensus        99 -~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A           99 -FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             -SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence             224799999987543   44578999999999999999986543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=1.9e-14  Score=114.13  Aligned_cols=116  Identities=27%  Similarity=0.311  Sum_probs=93.1

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      .+.....+..++...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...+.. +++++.+|+.+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~  140 (215)
T 2yxe_A           62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLG  140 (215)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGC
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccC
Confidence            3555555656666677889999999999999999988743579999999999999999999988875 499999998554


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++.       .++||+|++........   +.+.+.|+|||.+++.-
T Consensus       141 ~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          141 YEP-------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CCC-------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEE
Confidence            321       36899999887655543   57889999999998863

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.57  E-value=9.8e-15  Score=117.65  Aligned_cols=116  Identities=18%  Similarity=0.174  Sum_probs=87.7

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH
Q 026547           59 GQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD  136 (237)
Q Consensus        59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (237)
                      ..++..++..  .++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.|+++.+..+  .+++++++|+.+.++
T Consensus        47 ~~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~  122 (236)
T 1zx0_A           47 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP  122 (236)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG
T ss_pred             HHHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhc
Confidence            3444444433  456799999999999999997642  2489999999999999999887666  479999999988643


Q ss_pred             HHhhcCCCCCceeEEEEeCCC-----cC---cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          137 QLLKDSENEGSFDYAFVDADK-----VN---YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~-----~~---~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+     ..++||+|++|...     ..   ...+++.+.++|+|||++++.+..
T Consensus       123 ~~-----~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          123 TL-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             GS-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cc-----CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            33     24789999984221     11   225689999999999999987654

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=9.7e-15  Score=120.43  Aligned_cols=119  Identities=15%  Similarity=0.156  Sum_probs=97.6

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+...+.+..+....++.+|||+|||+|..++.+++..+ .++|+++|+++.+++.|+++++.+++. ++.++++|+.+
T Consensus       103 ~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~  180 (272)
T 3a27_A          103 SQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRD  180 (272)
T ss_dssp             CGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGG
T ss_pred             CCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHH
Confidence            3344444444455566778999999999999999999865 679999999999999999999999885 48899999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      . +.       .++||+|+++... ...++++.+.+.|+|||++++....
T Consensus       181 ~-~~-------~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          181 V-EL-------KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             C-CC-------TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             c-Cc-------cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            6 32       3689999999765 6677889999999999999987553

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.57  E-value=3.3e-14  Score=117.61  Aligned_cols=104  Identities=17%  Similarity=0.216  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||||||+|..+..++..   +.+|+++|+++.+++.++++++..++.++++++++|+.+..+.      ..++||
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~fD  138 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------LETPVD  138 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------CSSCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------cCCCce
Confidence            3569999999999999999985   5699999999999999999999988877899999999776422      258999


Q ss_pred             EEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          150 YAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       150 ~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|++....   .+...+++.+.++|+|||.+++...
T Consensus       139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99987543   3457899999999999999998764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.57  E-value=5.7e-14  Score=116.53  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           55 APDAGQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .+....++..+..   ..++.+|||+|||+|..++.++.. + +.+|+++|+++.+++.|+++++..++.++++++++|+
T Consensus       105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~  182 (284)
T 1nv8_A          105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF  182 (284)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred             ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc
Confidence            3445555544443   236679999999999999999998 5 8899999999999999999999999888899999999


Q ss_pred             hHHHHHHhhcCCCCCce---eEEEEeCCCc------------C----------cHHHHHHHH-ccCCCCeEEEEe
Q 026547          132 LSVLDQLLKDSENEGSF---DYAFVDADKV------------N----------YWNYHERLM-KLLKVGGIAVYD  180 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~---D~i~id~~~~------------~----------~~~~~~~~~-~~L~~gG~lv~~  180 (237)
                      .+.++         ++|   |+|+++.+..            .          -..+++.+. +.|+|||.+++.
T Consensus       183 ~~~~~---------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          183 LEPFK---------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             TGGGG---------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             hhhcc---------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            87542         467   9999973211            0          126899999 999999999985

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.57  E-value=3.9e-14  Score=113.41  Aligned_cols=136  Identities=16%  Similarity=0.172  Sum_probs=99.4

Q ss_pred             hcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           68 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        68 ~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+||| +|..++.+++..  +.+|+++|+++.+++.|+++++..+.  +++++++|+....+ +     ..+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~-~-----~~~  122 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKG-V-----VEG  122 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTT-T-----CCS
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhh-c-----ccC
Confidence            4577899999999 999999999864  56999999999999999999999887  69999999643211 1     147


Q ss_pred             ceeEEEEeCCCc----------------------CcHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHH
Q 026547          147 SFDYAFVDADKV----------------------NYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQ  204 (237)
Q Consensus       147 ~~D~i~id~~~~----------------------~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~  204 (237)
                      +||+|+++..-.                      .+..+++.+.++|+|||.+++.-..  +                ..
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~----------------~~  184 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD--K----------------EK  184 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES--C----------------HH
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc--c----------------Hh
Confidence            899999874311                      1367899999999999999884211  0                12


Q ss_pred             HHHHHHHHhhcCCCceEEeeecCCceEE
Q 026547          205 ATLDLNRSLADDPRIQLSHVPLGDGITI  232 (237)
Q Consensus       205 ~~~~~~~~l~~~~~~~~~~lp~~~Gl~i  232 (237)
                      ...++.+.+.+. ++....+....|...
T Consensus       185 ~~~~~~~~l~~~-g~~~~~~~~~~g~~~  211 (230)
T 3evz_A          185 LLNVIKERGIKL-GYSVKDIKFKVGTRW  211 (230)
T ss_dssp             HHHHHHHHHHHT-TCEEEEEEECCCC-C
T ss_pred             HHHHHHHHHHHc-CCceEEEEecCCCeE
Confidence            244454544433 567666666666543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.57  E-value=2.6e-14  Score=118.80  Aligned_cols=109  Identities=13%  Similarity=0.169  Sum_probs=91.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.++++++..++.++++++++|+.+..       +..+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-------~~~~  149 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-------CEDN  149 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-------SCTT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-------CCCC
Confidence            44567899999999999999999865  35999999999999999999999998888999999987641       2247


Q ss_pred             ceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          147 SFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       147 ~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +||+|++....   .+...+++.+.++|+|||.+++.+...
T Consensus       150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            89999987542   335789999999999999999987654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.57  E-value=3.2e-14  Score=115.70  Aligned_cols=119  Identities=19%  Similarity=0.219  Sum_probs=96.3

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEeccc
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIESEA  131 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~  131 (237)
                      .+.+.....+...+...++.+|||+|||+|..+..+++.+.+..+|+++|+++.+++.++++++.. | .++++++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~  157 (258)
T 2pwy_A           79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKL  157 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCG
T ss_pred             cccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECch
Confidence            344555555556666778889999999999999999998544789999999999999999999887 7 46799999998


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+.  .+     ..++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       158 ~~~--~~-----~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          158 EEA--EL-----EEAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             GGC--CC-----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             hhc--CC-----CCCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            765  11     1368999999754  44578999999999999999864

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.57  E-value=6e-14  Score=115.76  Aligned_cols=117  Identities=20%  Similarity=0.275  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+....++..+...  .++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.++++++..++. +++++++|+.
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~  169 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF  169 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence            45566666666554  4567999999999999999998876 789999999999999999999988875 6999999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +.++        .++||+|+++.+.                            ..+..+++.+.+.|+|||.+++..
T Consensus       170 ~~~~--------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          170 SALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             GGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hhcc--------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            7532        3789999987321                            123567888889999999999863

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.57  E-value=2.5e-14  Score=118.41  Aligned_cols=114  Identities=8%  Similarity=0.065  Sum_probs=93.1

Q ss_pred             HHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           59 GQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        59 ~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ...+..++.   ..++.+|||||||+|..+..+++..+  .+|+++|+++.+++.+++++...+..++++++.+|+.+. 
T Consensus        50 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-  126 (287)
T 1kpg_A           50 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-  126 (287)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-
T ss_pred             HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-
Confidence            334444443   34567999999999999999996543  499999999999999999999888878899999998653 


Q ss_pred             HHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          136 DQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                               .++||+|++....     .+...+++.+.++|+|||.+++.+...
T Consensus       127 ---------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          127 ---------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             ---------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             ---------CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence                     2789999987432     456789999999999999999987654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.56  E-value=4.8e-14  Score=116.25  Aligned_cols=124  Identities=16%  Similarity=0.205  Sum_probs=98.9

Q ss_pred             CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-C-CCCcEEEE
Q 026547           50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-G-VDHKINFI  127 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~-~~~~v~~~  127 (237)
                      ....+.+.....+...+...++.+|||+|||+|..+..+++.+.+..+|+++|+++.+++.|+++++.. | +.++++++
T Consensus        79 ~~~~~~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~  158 (280)
T 1i9g_A           79 GPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLV  158 (280)
T ss_dssp             CSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred             cceeecHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence            333445656666666666777889999999999999999986544789999999999999999999887 5 45679999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ++|+.+..       ...++||+|+++..  ....+++.+.+.|+|||.+++...
T Consensus       159 ~~d~~~~~-------~~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          159 VSDLADSE-------LPDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             CSCGGGCC-------CCTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             ECchHhcC-------CCCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEeC
Confidence            99987751       11468999999764  445789999999999999998643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.56  E-value=9.2e-15  Score=115.32  Aligned_cols=119  Identities=13%  Similarity=0.253  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhh----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           56 PDAGQLMAMLLKL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        56 ~~~~~~l~~l~~~----~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      +....++..+...    .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.+++++...+.  +++++++|+
T Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~   88 (215)
T 4dzr_A           12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADG   88 (215)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHHH
T ss_pred             ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcch
Confidence            4444444444433    5678999999999999999999876 77999999999999999999988776  689999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcC-----------------------------cHHHHHHHHccCCCCeE-EEEe
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVN-----------------------------YWNYHERLMKLLKVGGI-AVYD  180 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~-----------------------------~~~~~~~~~~~L~~gG~-lv~~  180 (237)
                      .+.++.....   .++||+|+++..-..                             +..+++.+.++|+|||. +++.
T Consensus        89 ~~~~~~~~~~---~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A           89 IEWLIERAER---GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             HHHHHHHHHT---TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             Hhhhhhhhhc---cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            8865532111   379999998632100                             15677777899999999 5554

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.56  E-value=2.4e-14  Score=120.26  Aligned_cols=114  Identities=11%  Similarity=0.115  Sum_probs=93.9

Q ss_pred             HHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           59 GQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        59 ~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ...+..++.   ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.+++++...++.++++++.+|+.+. 
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  152 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-  152 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-
Confidence            334444444   3456799999999999999999865  4599999999999999999999988888899999998654 


Q ss_pred             HHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          136 DQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                               .++||+|++....     .+...+++.+.++|+|||.+++.+...
T Consensus       153 ---------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          153 ---------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             ---------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             ---------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence                     3789999987432     456789999999999999999987764

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.56  E-value=1.1e-13  Score=112.96  Aligned_cols=103  Identities=20%  Similarity=0.261  Sum_probs=87.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|+++.+++.++++++..+..  ++++++|+.+.++        .++
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~---g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--------~~~  184 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--------FGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--------GCC
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--------CCC
Confidence            356789999999999999998875   339999999999999999999988875  8999999877532        378


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ||+|+++........+++.+.++|+|||.+++....
T Consensus       185 fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          185 FDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            999999876656678899999999999999997654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.56  E-value=2e-14  Score=113.42  Aligned_cols=120  Identities=9%  Similarity=0.016  Sum_probs=85.3

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC-----------CCCc
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG-----------VDHK  123 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----------~~~~  123 (237)
                      .+...+++..+ ...++.+|||+|||+|..+.++++.   +.+|+|+|+|+.+++.|++......           ...+
T Consensus         8 ~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~   83 (203)
T 1pjz_A            8 NKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG   83 (203)
T ss_dssp             THHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred             CHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCc
Confidence            44444444433 2346789999999999999999985   5699999999999999998754210           1246


Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ++++++|+.+.....      .++||+|+....-.     ....+++++.++|+|||.+++....+
T Consensus        84 v~~~~~d~~~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~  143 (203)
T 1pjz_A           84 IEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  143 (203)
T ss_dssp             SEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             cEEEECccccCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence            999999997753221      16899998754321     23457899999999999844433333

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.56  E-value=8.8e-14  Score=127.91  Aligned_cols=163  Identities=10%  Similarity=0.080  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc------CCCCcEEEEeccc
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA------GVDHKINFIESEA  131 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~  131 (237)
                      ..+.+..++...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.|+++++..      +. .+++++++|+
T Consensus       709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa  787 (950)
T 3htx_A          709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCT
T ss_pred             HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECch
Confidence            3344444555568899999999999999999987643579999999999999999977643      33 4799999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCcCC------CCc-----ccCC----
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNTLW------GGT-----VAMS----  191 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~------~g~-----~~~~----  191 (237)
                      .+...       ..++||+|++.....++     ..+++.+.+.|+|| .+++.....      .+.     ..++    
T Consensus       788 ~dLp~-------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~  859 (950)
T 3htx_A          788 LEFDS-------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQ  859 (950)
T ss_dssp             TSCCT-------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------C
T ss_pred             HhCCc-------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccc
Confidence            77522       24899999987654442     24788999999999 666654322      211     0000    


Q ss_pred             --CCCCCccccc-hHHHHHHHHHHhhcCCCceEEeeecCCc
Q 026547          192 --EEQVPDHLRG-GRQATLDLNRSLADDPRIQLSHVPLGDG  229 (237)
Q Consensus       192 --~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~lp~~~G  229 (237)
                        .-..+.+.-. ....++.+.+.+..+.++.+.+.++|+|
T Consensus       860 ~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          860 LPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             CSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             cccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence              0011222222 2445677777788888999999999988

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.56  E-value=7.6e-14  Score=112.61  Aligned_cols=116  Identities=17%  Similarity=0.226  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ....+.......++.+|||+|||+|..+..++...   .+|+++|+++.+++.+++++...+.. +++++++|+.+. + 
T Consensus         9 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-   82 (239)
T 1xxl_A            9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-   82 (239)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-
T ss_pred             CcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-
Confidence            33344455667788899999999999999998864   49999999999999999999888864 699999998663 1 


Q ss_pred             HhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          138 LLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                           ...++||+|++....   .+...+++.+.++|+|||.+++.+...
T Consensus        83 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           83 -----FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             -----SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             -----CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence                 224789999987542   346788999999999999999876543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.56  E-value=2.3e-14  Score=114.73  Aligned_cols=115  Identities=13%  Similarity=0.116  Sum_probs=94.4

Q ss_pred             HHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           60 QLMAMLLKLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        60 ~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..|..++... ++.+|+|||||+|+.++.+++..+ ..+|+++|+++.+++.|+++++.+|+.++++++++|..+.+.. 
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-   87 (230)
T 3lec_A           10 KRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-   87 (230)
T ss_dssp             HHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-
T ss_pred             HHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-
Confidence            3455666654 456999999999999999998754 6789999999999999999999999999999999999886531 


Q ss_pred             hhcCCCCCceeEEEEeCC-CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          139 LKDSENEGSFDYAFVDAD-KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                            .++||+|++.+. .....++++...+.|+++|.+|+...
T Consensus        88 ------~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           88 ------ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             ------GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ------ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence                  147999886543 34467788888899999999999764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.56  E-value=6.2e-14  Score=114.32  Aligned_cols=123  Identities=10%  Similarity=-0.004  Sum_probs=89.3

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh----------c---
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK----------A---  118 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~----------~---  118 (237)
                      ....+...+++..+....++.+|||+|||+|..+.+|++.   +.+|+|||+++.+++.|++....          .   
T Consensus        50 ~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~  126 (252)
T 2gb4_A           50 EQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAK  126 (252)
T ss_dssp             TTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred             CCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhccccccccccccccccc
Confidence            3345555565555444457789999999999999999984   56999999999999999876431          0   


Q ss_pred             ---CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          119 ---GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       119 ---~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                         ....+++++++|+.+....      ..++||+|+....     ......+++.+.++|+|||.+++....
T Consensus       127 ~~~~~~~~i~~~~~D~~~l~~~------~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~  193 (252)
T 2gb4_A          127 VFKSSSGSISLYCCSIFDLPRA------NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS  193 (252)
T ss_dssp             EEEETTSSEEEEESCTTTGGGG------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ccccCCCceEEEECccccCCcc------cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence               0124699999999875321      1278999986432     223457899999999999998654433

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.55  E-value=6.9e-15  Score=123.08  Aligned_cols=109  Identities=15%  Similarity=0.085  Sum_probs=89.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..++....++.+|+++|+++.+++.+++++...+..++++++++|+.+..       . .++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~-~~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-------T-REG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-------C-CSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-------c-cCC
Confidence            45678999999999999999863333378999999999999999999999888888999999998752       1 389


Q ss_pred             eeEEEEeCCCc---C---cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDADKV---N---YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~---~---~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ||+|++.....   .   ...+++.+.+.|+|||.+++.+...
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            99999865322   2   2247999999999999999988653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.55  E-value=5.8e-14  Score=115.47  Aligned_cols=108  Identities=25%  Similarity=0.295  Sum_probs=91.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+..+++..+ +.+|+++|+++.+++.+++++...+.. +++++.+|+.+..       ...++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLP-------FEDSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCC-------SCTTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCC-------CCCCC
Confidence            45678999999999999999999876 789999999999999999999988875 5999999987642       12579


Q ss_pred             eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ||+|++...   ..+...+++.+.++|+|||++++.+..+
T Consensus       106 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          106 FDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             eeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            999998753   3445689999999999999999976544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.55  E-value=7.1e-14  Score=121.16  Aligned_cols=112  Identities=19%  Similarity=0.279  Sum_probs=93.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ....++++|||+|||+|..++.++...  ..+|+++|+++.+++.|+++++.+++ .++++++++|+.+.++.+...   
T Consensus       216 ~~~~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~---  290 (396)
T 3c0k_A          216 RRYVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---  290 (396)
T ss_dssp             HHHCTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT---
T ss_pred             HHhhCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc---
Confidence            334678899999999999999999852  35999999999999999999999998 657999999999987765432   


Q ss_pred             CCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..+||+|++|.+.            ..+..++..+.+.|+|||++++...
T Consensus       291 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            3689999999653            3456788889999999999998654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.7e-14  Score=117.05  Aligned_cols=109  Identities=15%  Similarity=0.133  Sum_probs=87.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEeccchHHHHHHhh-cCCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIESEALSVLDQLLK-DSENEG  146 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~-~~~~~~  146 (237)
                      .++.+|||+|||+|..+..+++.++...+|+++|+++.+++.|+++++.. +..++++++++|+.+... . . .....+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~-~-~~~~~~~~  112 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF-L-GADSVDKQ  112 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG-G-CTTTTTSS
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc-c-ccccccCC
Confidence            46789999999999999999987634789999999999999999999887 455689999999977421 1 0 000126


Q ss_pred             ceeEEEEeCCC--cCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADK--VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +||+|++....  -+...+++.+.+.|+|||.+++
T Consensus       113 ~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          113 KIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            89999987431  1667899999999999999988

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.55  E-value=2.5e-14  Score=116.08  Aligned_cols=106  Identities=16%  Similarity=0.204  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--------CCCCcEEEEeccchHHHHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--------GVDHKINFIESEALSVLDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~~~  140 (237)
                      .++.+|||||||+|..++.++...+ ..+|+|||+++.+++.++++++..        ++ ++++++++|+.+.++..  
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~--  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNF--  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGT--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHh--
Confidence            3567999999999999999999876 779999999999999999998876        66 46999999998755532  


Q ss_pred             cCCCCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547          141 DSENEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                        ...+++|.|++......           ...+++.+.++|+|||.+++.
T Consensus       124 --~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          124 --FEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             --SCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --ccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence              12478999987643322           258999999999999999884

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.55  E-value=2.7e-14  Score=119.82  Aligned_cols=108  Identities=14%  Similarity=0.236  Sum_probs=90.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.|+++++..++.++++++++|+.+..       ...++
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~  185 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-------FDKGA  185 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-------CCTTC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-------CCCCC
Confidence            3456799999999999999999864  46999999999999999999999998888999999987641       12479


Q ss_pred             eeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ||+|++...  .-....+++.+.++|+|||.+++.+...
T Consensus       186 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          186 VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            999998643  2236789999999999999999876544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.55  E-value=9.2e-15  Score=117.33  Aligned_cols=105  Identities=16%  Similarity=0.208  Sum_probs=86.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.+++++...+   +++++++|+.+...        .++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~--------~~~  109 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDF--------EEK  109 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCC--------CSC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCC--------CCC
Confidence            34678999999999999999999886 7899999999999999999875544   69999999877521        379


Q ss_pred             eeEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ||+|++.......     ..+++.+.+.|+|||.+++.+...
T Consensus       110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            9999988643332     248999999999999999977654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.55  E-value=2.1e-14  Score=119.06  Aligned_cols=108  Identities=18%  Similarity=0.227  Sum_probs=89.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--C-CCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--V-DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++...+  + .++++++++|+.+.++..      
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  148 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------
Confidence            34678999999999999999998754 6799999999999999999886542  2 368999999998877643      


Q ss_pred             CCceeEEEEeCCCc-----C--cHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKV-----N--YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~-----~--~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .++||+|++|....     .  ..++++.+.+.|+|||++++...
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            47899999986321     1  16899999999999999998743

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.54  E-value=7.8e-14  Score=120.48  Aligned_cols=109  Identities=10%  Similarity=0.213  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++++|||+|||+|..+++++...  ..+|+++|+++.+++.|+++++.+++.+ +++++++|+.+.++.+..+   ..+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CCC
Confidence            577899999999999999999742  3489999999999999999999999875 7999999999988765432   368


Q ss_pred             eeEEEEeCCCc-----C-------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVDADKV-----N-------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~~~-----~-------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ||+|++|.+..     .       +.++++.+.++|+|||++++...
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99999986541     1       23456777899999999998754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.54  E-value=6.4e-14  Score=122.06  Aligned_cols=123  Identities=14%  Similarity=0.152  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHH-------HHHHHhcCCC-CcEEEE
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIG-------LPVIKKAGVD-HKINFI  127 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a-------~~~~~~~~~~-~~v~~~  127 (237)
                      +.....+...+...++.+|||+|||+|..++.+++..+ ..+|+|||+++.+++.|       +++++..|+. .+++++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEE
Confidence            33333333444566788999999999999999998765 56899999999999988       8888888853 579999


Q ss_pred             eccchHH---HHHHhhcCCCCCceeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          128 ESEALSV---LDQLLKDSENEGSFDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       128 ~~d~~~~---~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      ++|....   ++..      .++||+|++...  .......++.+.+.|+|||.+++.+.+..
T Consensus       307 ~gD~~~~~~~~~~~------~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p  363 (433)
T 1u2z_A          307 LKKSFVDNNRVAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS  363 (433)
T ss_dssp             ESSCSTTCHHHHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             EcCccccccccccc------cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence            9865421   2111      268999998632  24456778899999999999999876643

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.54  E-value=3e-14  Score=119.33  Aligned_cols=107  Identities=15%  Similarity=0.182  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHh---cCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKK---AGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..   ....++++++.+|+.+.+...     ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~  167 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cC
Confidence            5678999999999999999998644 67999999999999999998743   222468999999998876431     14


Q ss_pred             CceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             TCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            78999999864322       1688999999999999999863

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.54  E-value=2.2e-14  Score=115.16  Aligned_cols=107  Identities=14%  Similarity=0.106  Sum_probs=86.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|+.+.++|+...+.++|+++|+++++++.++++.++.   .++..+.+|+.+.....    ...++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~----~~~~~  147 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYR----HLVEG  147 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccc----cccce
Confidence            567889999999999999999999877899999999999999998876554   35888888876532211    12578


Q ss_pred             eeEEEEeCCCcC-cHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDADKVN-YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~~~~-~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|+||++..... ...++.++.+.|||||.+++..
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            999998865443 4568899999999999998853

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.54  E-value=4.3e-14  Score=113.81  Aligned_cols=115  Identities=21%  Similarity=0.319  Sum_probs=91.9

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+.....+..++...++.+|||+|||+|+.+..+++..+  .+|+++|+++.+++.++++++..++.+ ++++.+|+..
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~  151 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSK  151 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGG
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCccc
Confidence            3455666666666777888999999999999999998764  699999999999999999999988755 9999999743


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++.       ..+||+|+++.......   +.+.+.|+|||.+++.-
T Consensus       152 ~~~~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          152 GFPP-------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             CCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CCCC-------CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEE
Confidence            3221       24699999987655443   46788999999998864

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.54  E-value=5e-14  Score=122.13  Aligned_cols=112  Identities=24%  Similarity=0.370  Sum_probs=93.3

Q ss_pred             hhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ... ++++|||+|||+|..++.++.. + ..+|+++|+++.+++.|+++++.+++.++++++++|+.+.++.+...   .
T Consensus       213 ~~~~~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~  287 (396)
T 2as0_A          213 KWVQPGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---G  287 (396)
T ss_dssp             GGCCTTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---T
T ss_pred             HHhhCCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---C
Confidence            344 7789999999999999999985 2 45999999999999999999999998668999999999887765332   3


Q ss_pred             CceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+||+|++|.+.            ..+..++..+.++|+|||++++..+.
T Consensus       288 ~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          288 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            689999998654            33567888899999999988886553

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.54  E-value=3.4e-14  Score=112.77  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+.+..+..   +++.++.+|+.+.....    +..++|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~----~~~~~f  127 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS----GIVEKV  127 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT----TTCCCE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc----ccccce
Confidence            4667999999999999999999887 789999999999887766655543   35888898886531100    013789


Q ss_pred             eEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKVNYW-NYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|+++....... .+++++.+.|+|||.+++.
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999986443323 3589999999999999987

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.54  E-value=5.6e-14  Score=112.30  Aligned_cols=105  Identities=18%  Similarity=0.248  Sum_probs=85.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC----CCcEEEEeccchHHHHHHhhcCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV----DHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..++.+|||+|||+|..+..+++.++..++|+++|+++.+++.+++++...+.    .++++++++|+.+....      
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~------  148 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE------  148 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc------
Confidence            55678999999999999999998764457999999999999999999988764    35799999998754221      


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       .++||+|+++......   ++.+.+.|+|||.+++.-.
T Consensus       149 -~~~fD~i~~~~~~~~~---~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          149 -EAPYDAIHVGAAAPVV---PQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             -GCCEEEEEECSBBSSC---CHHHHHTEEEEEEEEEEES
T ss_pred             -CCCcCEEEECCchHHH---HHHHHHhcCCCcEEEEEEe
Confidence             3689999998765443   4678899999999998643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.53  E-value=1.6e-14  Score=119.18  Aligned_cols=113  Identities=13%  Similarity=0.289  Sum_probs=88.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-CCCCcEEEEeccchHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-GVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...+...+...++.+|||+|||+|..+..+++.+.++.+|+++|+++.+++.++++++.. |. ++++++++|+.+.++ 
T Consensus        99 ~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~-  176 (275)
T 1yb2_A           99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS-  176 (275)
T ss_dssp             -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC-
T ss_pred             HHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc-
Confidence            344444555667789999999999999999987433789999999999999999999887 74 569999999877321 


Q ss_pred             HhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          138 LLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                             .++||+|+++..  +...+++.+.+.|+|||.+++...
T Consensus       177 -------~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          177 -------DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             -------SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred             -------CCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEeC
Confidence                   368999999643  446789999999999999998653

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.53  E-value=4.9e-14  Score=113.30  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=86.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..++.   .+.+|+++|+++.+++.+++++...+...+++++++|+.+..+        .++||
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--------TELFD  134 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--------SSCEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--------CCCee
Confidence            456999999999999999976   3679999999999999999998876666689999999987531        46999


Q ss_pred             EEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          150 YAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       150 ~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +|++....     .....+++.+.++|+|||.+++.....
T Consensus       135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            99976532     245788999999999999999865543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.53  E-value=4.8e-14  Score=113.74  Aligned_cols=115  Identities=10%  Similarity=0.150  Sum_probs=93.6

Q ss_pred             HHHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           60 QLMAMLLKLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        60 ~~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..|..++... ++.+|||||||+|+.++.+++..+ ..+|+++|+++.+++.|+++++.+|+.++++++.+|..+.+.. 
T Consensus        10 ~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-   87 (244)
T 3gnl_A           10 KRLEKVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-   87 (244)
T ss_dssp             HHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-
T ss_pred             HHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-
Confidence            3455666654 456999999999999999998754 6689999999999999999999999988999999999886531 


Q ss_pred             hhcCCCCCceeEEEEeC-CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          139 LKDSENEGSFDYAFVDA-DKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                            .++||+|++.+ ......++++.....|++++.+|+...
T Consensus        88 ------~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           88 ------KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             ------GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ------cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence                  13699988653 334467788888899999999999754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.53  E-value=7e-13  Score=102.46  Aligned_cols=191  Identities=12%  Similarity=0.023  Sum_probs=118.3

Q ss_pred             CcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCC
Q 026547           16 QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPE   94 (237)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~   94 (237)
                      .-+++.+++++.+   -+-+.+-.....|.+.      + +....+...+.. ..++.+|||+|||+|..++.++...| 
T Consensus         4 ~~~~~~~~~~~~~---~~~~~~l~~H~STReR------L-p~ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p-   72 (200)
T 3fzg_A            4 NWDKLLKKYNQGQ---LSIEDLLKIHSSTNER------V-ATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENE-   72 (200)
T ss_dssp             CHHHHHHHHHTTS---CCHHHHHHHSHHHHTT------G-GGHHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSC-
T ss_pred             cHHHHHHHHHHhh---hhHHHHHhhCCCHHHH------h-HhHHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCC-
Confidence            3456667777643   2222222223333331      1 444555555444 35688999999999999999988777 


Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCc---HHHHHHHHccC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNY---WNYHERLMKLL  171 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~---~~~~~~~~~~L  171 (237)
                      ..+|+++|+++.+++.++++++..|...++++  .|..+..+        .++||+|+....-+..   ...+..+.+.|
T Consensus        73 ~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~--------~~~~DvVLa~k~LHlL~~~~~al~~v~~~L  142 (200)
T 3fzg_A           73 KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY--------KGTYDVVFLLKMLPVLKQQDVNILDFLQLF  142 (200)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT--------TSEEEEEEEETCHHHHHHTTCCHHHHHHTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC--------CCCcChhhHhhHHHhhhhhHHHHHHHHHHh
Confidence            67999999999999999999999998766766  55544321        4889999876432221   22344788999


Q ss_pred             CCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          172 KVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       172 ~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      +|||++|--++..-|.-      .|.....+.   +.|.+.+. ......-.+-+++-+....+++
T Consensus       143 ~pggvfISfptksl~Gr------~~gm~~~Y~---~~~~~~~~-~~~~~~~~~~~~nEl~y~~~~~  198 (200)
T 3fzg_A          143 HTQNFVISFPIKSLSGK------EKGMEENYQ---LWFESFTK-GWIKILDSKVIGNELVYITSGF  198 (200)
T ss_dssp             EEEEEEEEEECCCCC--------CTTCCCCHH---HHHHHHTT-TTSCEEEEEEETTEEEEEECCC
T ss_pred             CCCCEEEEeChHHhcCC------CcchhhhHH---HHHHHhcc-CcceeeeeeeeCceEEEEEecc
Confidence            99999998764321111      111112222   23333343 3333444556788887776653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.52  E-value=1.4e-13  Score=113.89  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=86.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.+++++...++  +++++++|+.+...        .+
T Consensus       117 ~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--------~~  183 (286)
T 3m70_A          117 KIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--------QE  183 (286)
T ss_dssp             HHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--------CS
T ss_pred             hccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--------cC
Confidence            3447889999999999999999985   56999999999999999999998887  69999999877421        47


Q ss_pred             ceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +||+|++...     ......+++.+.+.|+|||.+++....
T Consensus       184 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (286)
T 3m70_A          184 NYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAM  225 (286)
T ss_dssp             CEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            8999998753     234568999999999999997764433

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.52  E-value=2.3e-13  Score=106.13  Aligned_cols=107  Identities=15%  Similarity=0.128  Sum_probs=87.3

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .++...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...+.. +++++++|+.+..       .
T Consensus        26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~   94 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT-------F   94 (199)
T ss_dssp             HHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC-------C
T ss_pred             HHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC-------C
Confidence            3344557789999999999999999985   569999999999999999999888874 5999999987642       1


Q ss_pred             CCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       .++||+|++....     .....+++.+.+.|+|||.+++...
T Consensus        95 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           95 -DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             -CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             -CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence             4789999987542     2457889999999999999776443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.52  E-value=5.8e-15  Score=119.19  Aligned_cols=112  Identities=14%  Similarity=0.137  Sum_probs=89.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..++..+....++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++++..++.++++++++|+.+..+  
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  141 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--  141 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--
T ss_pred             HHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--
Confidence            334444555557889999999999999999985   479999999999999999999999987789999999988652  


Q ss_pred             hhcCCCCCceeEEEEeCCCcCc---HHHHHHHHccCCCCeEEEEeC
Q 026547          139 LKDSENEGSFDYAFVDADKVNY---WNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~~~---~~~~~~~~~~L~~gG~lv~~~  181 (237)
                            .++||+|+++......   ...+..+.++|+|||.++++.
T Consensus       142 ------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          142 ------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             ------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             ------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence                  3799999998654332   124445678999999977754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.52  E-value=3e-14  Score=122.61  Aligned_cols=105  Identities=13%  Similarity=0.136  Sum_probs=86.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC--cEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH--KINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++.+|||+|||+|..++.+++..| +.+|+++|+++.+++.++++++..++.+  +++++.+|+.+.++        
T Consensus       219 ~~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~--------  289 (375)
T 4dcm_A          219 PENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------  289 (375)
T ss_dssp             CCSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC--------
T ss_pred             cccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC--------
Confidence            334457999999999999999999876 7899999999999999999999988753  58889999877432        


Q ss_pred             CCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .++||+|+++..-.        ....+++.+.+.|+|||.+++.
T Consensus       290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            47899999875421        1346899999999999999884

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.52  E-value=7.8e-14  Score=112.78  Aligned_cols=116  Identities=24%  Similarity=0.367  Sum_probs=95.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +.+.....+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++++..++.++++++.+|+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  151 (248)
T 2yvl_A           75 IYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD  151 (248)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT
T ss_pred             ccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh
Confidence            44555556666666778889999999999999999987   569999999999999999999998887789999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...       ..++||+|+++..  ....+++.+.+.|+|||.+++..
T Consensus       152 ~~~-------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          152 AEV-------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             SCC-------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             ccc-------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            430       1368999998654  44578899999999999998864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.52  E-value=3.8e-14  Score=113.41  Aligned_cols=106  Identities=16%  Similarity=0.182  Sum_probs=84.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++.+..   ++++++++|+.+.....    ...++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~----~~~~~  143 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYR----ALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhh----cccCC
Confidence            345779999999999999999987644689999999999999999887654   46999999987632110    01368


Q ss_pred             eeEEEEeCCCcCcH-HHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYW-NYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~-~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|+++....... .+++.+.+.|+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999987654443 4489999999999999886

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.52  E-value=5.5e-14  Score=121.33  Aligned_cols=110  Identities=23%  Similarity=0.348  Sum_probs=92.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +.. ++++|||+|||+|..++.++..   ..+|+++|+++.+++.|+++++.+++.+ ++++++|+.+.++.+...   .
T Consensus       206 ~~~-~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~---~  277 (382)
T 1wxx_A          206 ERF-RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE---G  277 (382)
T ss_dssp             GGC-CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT---T
T ss_pred             Hhc-CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc---C
Confidence            344 6789999999999999999986   4589999999999999999999999866 999999999987765432   3


Q ss_pred             CceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+||+|++|.+.            ..+..++..+.++|+|||++++....
T Consensus       278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            689999998754            23457888899999999999987643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.52  E-value=2.2e-14  Score=113.73  Aligned_cols=108  Identities=19%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhh
Q 026547           61 LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLK  140 (237)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  140 (237)
                      ++..+....++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...+   +++++++|+.+..+    
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~----  111 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFST----  111 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCC----
T ss_pred             HHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCC----
Confidence            3333444556679999999999999999886   3599999999999999999876543   69999999977641    


Q ss_pred             cCCCCCceeEEEEeCCCcC------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVN------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                          .++||+|++.....+      ...+++.+.++|+|||.+++...
T Consensus       112 ----~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          112 ----AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             ----SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ----CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence                489999998754322      24669999999999999998654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.51  E-value=5.2e-14  Score=113.42  Aligned_cols=109  Identities=14%  Similarity=0.123  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..++..+....++.+|||||||+|..+..+++..   .+|+++|+++.+++.|++.+..     +++++++|+.+..   
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~---   99 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ---   99 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC---
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC---
Confidence            3344445455678899999999999999998754   4899999999999999987632     6999999987762   


Q ss_pred             hhcCCCCCceeEEEEeCCC---cCcHHHHHHHH-ccCCCCeEEEEeCcC
Q 026547          139 LKDSENEGSFDYAFVDADK---VNYWNYHERLM-KLLKVGGIAVYDNTL  183 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~-~~L~~gG~lv~~~~~  183 (237)
                           ..++||+|++...-   .+...+++++. ++|+|||.+++....
T Consensus       100 -----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~  143 (250)
T 2p7i_A          100 -----LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN  143 (250)
T ss_dssp             -----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             -----cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence                 14789999987543   34578999999 999999999997644

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.51  E-value=5.4e-14  Score=114.98  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             HHHHHHhhc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           61 LMAMLLKLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        61 ~l~~l~~~~-~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      ++..+.... ...+|||||||+|..+..++..   ..+|+|+|+++.+++.|++       .++++++++++.+..    
T Consensus        29 l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~----   94 (257)
T 4hg2_A           29 LFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTG----   94 (257)
T ss_dssp             HHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCC----
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhc----
Confidence            334444433 3569999999999999999975   4599999999999987654       246999999987651    


Q ss_pred             hcCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         ...++||+|++....  -+...+++++.++|||||++++-.
T Consensus        95 ---~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           95 ---LPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             ---CCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---ccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence               236899999986432  235788999999999999998744

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=1.2e-13  Score=118.07  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=98.4

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      ++.+..+..+..++...++.+|||+|||+|..++.++....+..+|+|+|+++.+++.|+++++.+|+. +++++++|+.
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~  264 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADAR  264 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGG
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChh
Confidence            345666667777777777889999999999999999987623689999999999999999999999987 7999999998


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +....       .++||+|++|.+-..           +..+++.+.+.|+|||.+++-
T Consensus       265 ~~~~~-------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          265 HLPRF-------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGGGT-------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             hCccc-------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            86432       367899999754211           357888888999999999885

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.51  E-value=2.6e-13  Score=116.64  Aligned_cols=116  Identities=13%  Similarity=0.032  Sum_probs=88.8

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH-------HhcCCC-CcEEEEeccchHHH
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI-------KKAGVD-HKINFIESEALSVL  135 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-------~~~~~~-~~v~~~~~d~~~~~  135 (237)
                      ..+...++.+|||||||+|..++.++...+ ..+|+|||+++.+++.|+++.       +..|+. ++|+++++|+.+..
T Consensus       167 ~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp  245 (438)
T 3uwp_A          167 DEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEE  245 (438)
T ss_dssp             HHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHH
T ss_pred             HhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCc
Confidence            344566788999999999999999998765 557999999999999998764       345653 68999999997742


Q ss_pred             HHHhhcCCCCCceeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          136 DQLLKDSENEGSFDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      -..  .   ...+|+||++..  .......+.++.+.|+|||.||+.+.+..
T Consensus       246 ~~d--~---~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          246 WRE--R---IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHH--H---HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             ccc--c---cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            211  0   157999998653  23445677888899999999999877643

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.50  E-value=7.4e-14  Score=112.70  Aligned_cols=116  Identities=12%  Similarity=0.157  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhhc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           58 AGQLMAMLLKLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        58 ~~~~l~~l~~~~----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ...++..+....    ++.+|||+|||+|..+..++...  ..+|+++|+++.+++.+++++...+ ..+++++.+|+.+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~  139 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQD  139 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhh
Confidence            344444444332    47899999999999999988754  4599999999999999999987664 2468999999866


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..       ...++||+|++......     ...+++.+.++|+|||.+++.+..
T Consensus       140 ~~-------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          140 FT-------PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             CC-------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cC-------CCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            42       12368999998864322     347899999999999999986544

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.50  E-value=1.3e-13  Score=117.52  Aligned_cols=106  Identities=17%  Similarity=0.224  Sum_probs=88.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++++|||+|||+|..+..+++. + ..+|+++|++ ++++.|+++++..++.++++++++|+.+..  +     ..+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~--~-----~~~  132 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE--L-----PVE  132 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-----SSS
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc--C-----CCC
Confidence            4567889999999999999999986 3 5699999999 599999999999999888999999998761  1     247


Q ss_pred             ceeEEEEeC------CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          147 SFDYAFVDA------DKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       147 ~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +||+|+++.      .......+++.+.++|+|||+++.+..
T Consensus       133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence            999999853      234456788888999999999986543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.50  E-value=1.2e-13  Score=112.65  Aligned_cols=106  Identities=18%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..+++..  +.+|+++|+++.+++.+++++...   ++++++++|+.+..       ...+
T Consensus        52 ~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~  119 (266)
T 3ujc_A           52 ELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKE-------FPEN  119 (266)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCC-------CCTT
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCC-------CCCC
Confidence            34467799999999999999999865  469999999999999999876543   57999999987641       2258


Q ss_pred             ceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          147 SFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       147 ~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +||+|++....     .+...+++.+.++|+|||.+++.+...
T Consensus       120 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          120 NFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            99999987543     345678999999999999999987643

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.50  E-value=1.2e-13  Score=110.62  Aligned_cols=113  Identities=24%  Similarity=0.329  Sum_probs=90.1

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+.....+...+...++.+|||+|||+|..+..++...   .+|+++|+++.+++.+++++...+   +++++.+|+.+
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~  127 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTL  127 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccc
Confidence            345555556556666778899999999999999999864   699999999999999999987665   69999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .++.       .++||+|+++....+..   +.+.+.|+|||.+++...
T Consensus       128 ~~~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          128 GYEE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             CCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEEC
T ss_pred             cccc-------CCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEEc
Confidence            3321       37899999987655443   467899999999988643

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.50  E-value=7.8e-14  Score=114.93  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ....+.........++++|||+|||+|..++.+|+..  ..+|+++|++|.+++.++++++.+++.++++++++|+.++.
T Consensus       111 ~~~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~  188 (278)
T 3k6r_A          111 ANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP  188 (278)
T ss_dssp             GGHHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC
T ss_pred             CcHHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc
Confidence            3333333333334578899999999999999998863  46999999999999999999999999999999999998874


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .        .+.||.|+++.... ..++++.+.++|++||+|.++..
T Consensus       189 ~--------~~~~D~Vi~~~p~~-~~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          189 G--------ENIADRILMGYVVR-THEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             C--------CSCEEEEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             c--------ccCCCEEEECCCCc-HHHHHHHHHHHcCCCCEEEEEee
Confidence            3        47899999886543 35688888899999999987654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.50  E-value=1.2e-13  Score=110.98  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=80.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|+.+.+++..+.+.++|+++|+++.+++...+..++.   .++.++++|+.......    ...++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~----~~~~~  146 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK----SVVEN  146 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT----TTCCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh----ccccc
Confidence            557789999999999999999988766889999999999876554444332   36999999986532110    01368


Q ss_pred             eeEEEEeCCCcCcHHHH-HHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYH-ERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~  180 (237)
                      ||+|++|.........+ +.+.+.|+|||.+++.
T Consensus       147 ~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          147 VDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999998765555544 4455599999999986

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.50  E-value=1.6e-13  Score=118.60  Aligned_cols=106  Identities=19%  Similarity=0.268  Sum_probs=86.8

Q ss_pred             hhcC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVN-AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~-~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...+ +++|||+|||+|..++.++..   +++|+++|+++.+++.++++++.+++..  ++.++|+.+.++.+      .
T Consensus       210 ~~~~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~  278 (393)
T 4dmg_A          210 AMVRPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------E  278 (393)
T ss_dssp             TTCCTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------C
T ss_pred             HHhcCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------c
Confidence            3344 789999999999999999985   4569999999999999999999999864  46699998887654      2


Q ss_pred             CceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +.||+|++|.+.            ..+..+++.+.++|+|||.+++..+.
T Consensus       279 ~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          279 GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            459999999754            23457888889999999999966544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.50  E-value=3.5e-13  Score=105.65  Aligned_cols=102  Identities=14%  Similarity=0.067  Sum_probs=83.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...+.  +++++++|+.+..       ...++||+
T Consensus        30 ~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-------~~~~~fD~   97 (202)
T 2kw5_A           30 QGKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFD-------IVADAWEG   97 (202)
T ss_dssp             SSEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBS-------CCTTTCSE
T ss_pred             CCCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcC-------CCcCCccE
Confidence            339999999999999999875   56999999999999999999988775  6999999987651       12478999


Q ss_pred             EEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          151 AFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       151 i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |++....   .....+++.+.++|+|||.+++.....
T Consensus        98 v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           98 IVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             EEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            9876432   234678899999999999999976543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.49  E-value=5.7e-14  Score=112.49  Aligned_cols=117  Identities=16%  Similarity=0.212  Sum_probs=88.4

Q ss_pred             cHHHHH-HHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchHHHHHHHHHHhcCC----CCc
Q 026547           55 APDAGQ-LMAMLL-KLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQIMAIDVNRETYEIGLPVIKKAGV----DHK  123 (237)
Q Consensus        55 ~~~~~~-~l~~l~-~~~~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~  123 (237)
                      .+.... ++..+. ...++.+|||+|||+|+.+..+++..+.     .++|+++|+++.+++.++++++..+.    .++
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            344333 333333 3556679999999999999999886542     26999999999999999999887652    246


Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++++.+|+.+.++.       .++||+|+++......   .+.+.+.|+|||.+++.-
T Consensus       147 v~~~~~d~~~~~~~-------~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          147 LLIVEGDGRKGYPP-------NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVPV  194 (227)
T ss_dssp             EEEEESCGGGCCGG-------GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEEE
T ss_pred             eEEEECCcccCCCc-------CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEEE
Confidence            99999998774321       2789999998765554   367889999999999863

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.49  E-value=2.4e-14  Score=117.41  Aligned_cols=97  Identities=9%  Similarity=0.029  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CC-CCcEEEEeccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GV-DHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      .++++|||||||+|..+..++++ +  .+|+++|+++.+++.|++++...  ++ .++++++.+|+.+++          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            46789999999999999999987 4  79999999999999999876431  12 358999999987752          


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++||+|++|...  ...+++.+.+.|+|||++++.
T Consensus       138 ~~fD~Ii~d~~d--p~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          138 KKYDLIFCLQEP--DIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CCEEEEEESSCC--CHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhCCEEEECCCC--hHHHHHHHHHhcCCCcEEEEE
Confidence            579999998643  346899999999999999985

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.49  E-value=3.3e-13  Score=110.80  Aligned_cols=114  Identities=12%  Similarity=0.070  Sum_probs=87.6

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCch------HHHHHHHHHHhcCCCCcEEEEecc-chHHHHHH
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRE------TYEIGLPVIKKAGVDHKINFIESE-ALSVLDQL  138 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~------~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~  138 (237)
                      ....++.+|||||||+|..+..+++..++..+|+++|+++.      +++.++++++..++.++++++++| ....... 
T Consensus        39 ~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  117 (275)
T 3bkx_A           39 WQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-  117 (275)
T ss_dssp             HTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-
T ss_pred             cCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-
Confidence            34567789999999999999999988643689999999997      999999999988877789999998 2211101 


Q ss_pred             hhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          139 LKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                          ...++||+|++....   .+...+++.+..+++|||.+++.+...
T Consensus       118 ----~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          118 ----IADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             ----GTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             ----CCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence                124789999987542   233456666767777899999987654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.49  E-value=2.3e-13  Score=107.12  Aligned_cols=116  Identities=10%  Similarity=0.122  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH
Q 026547           57 DAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD  136 (237)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (237)
                      ...+++..+....++.+|||+|||+|..+..++..  .+.+|+++|+++.+++.+++++...+  .+++++++|+.+.. 
T Consensus        10 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~-   84 (209)
T 2p8j_A           10 QLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLP-   84 (209)
T ss_dssp             HHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCC-
T ss_pred             hHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCC-
Confidence            34455555666677889999999999975544433  25699999999999999999988766  35889999987641 


Q ss_pred             HHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          137 QLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                            ...++||+|++....     .....+++.+.+.|+|||.+++....
T Consensus        85 ------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           85 ------FKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             ------SCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ------CCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence                  124789999986432     33467889999999999999997654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.49  E-value=3.8e-13  Score=111.51  Aligned_cols=120  Identities=13%  Similarity=0.159  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC---CcEEEEeccch
Q 026547           56 PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD---HKINFIESEAL  132 (237)
Q Consensus        56 ~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~  132 (237)
                      ....+++..++...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.|+++....+..   .++.+..+|+.
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            445566666667678889999999999999999985   459999999999999999887554432   35788999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEe-CC---CcC-------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          133 SVLDQLLKDSENEGSFDYAFVD-AD---KVN-------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id-~~---~~~-------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +....+    ...++||+|++. ..   ...       ...+++.+.++|+|||++++...
T Consensus       120 ~~~~~~----~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          120 TLDKDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             GHHHHS----CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hCcccc----ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            764322    124799999986 22   223       57799999999999999998643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.49  E-value=2.5e-13  Score=125.49  Aligned_cols=111  Identities=20%  Similarity=0.342  Sum_probs=93.0

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +....++++|||+|||+|..+++++...  ..+|+++|+|+.+++.++++++.+|+. ++++++++|+.++++..     
T Consensus       534 l~~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~-----  606 (703)
T 3v97_A          534 LGQMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA-----  606 (703)
T ss_dssp             HHHHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC-----
T ss_pred             HHHhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc-----
Confidence            3445678899999999999999998742  357999999999999999999999987 58999999999987653     


Q ss_pred             CCCceeEEEEeCCC--------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          144 NEGSFDYAFVDADK--------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       144 ~~~~~D~i~id~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       .++||+|++|.+.              ..+..+++.+.++|+|||+++++...
T Consensus       607 -~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          607 -NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             -CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence             4789999998752              12456788888999999999987765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.48  E-value=4.1e-13  Score=108.80  Aligned_cols=100  Identities=18%  Similarity=0.309  Sum_probs=82.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+.  +++++++|+.+..        ..++|
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~--------~~~~f  106 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--------FKNEF  106 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc--------cCCCc
Confidence            35679999999999999999885   56999999999999999999988775  5899999987742        13689


Q ss_pred             eEEEEeCCC------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          149 DYAFVDADK------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       149 D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |+|++....      .....+++.+.++|+|||.++++-
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            999875321      234678899999999999999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.48  E-value=1.2e-13  Score=110.96  Aligned_cols=104  Identities=16%  Similarity=0.083  Sum_probs=82.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+.++++..+ .++|+++|+++.+++.++++.+..   +++.++.+|+.+....+   +. .++|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~---~~-~~~~  144 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA---NI-VEKV  144 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT---TT-SCCE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccccc---cc-CccE
Confidence            4567999999999999999999876 689999999999999999886543   57999999987621111   01 2689


Q ss_pred             eEEEEeCCCc-CcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKV-NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|+.+.... ....+++.+.+.|+|||.+++.
T Consensus       145 D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999664322 2366799999999999999986

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.48  E-value=1.1e-13  Score=119.44  Aligned_cols=116  Identities=14%  Similarity=0.278  Sum_probs=91.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-----C-CC-CcEEEEeccchHHHHHHhh
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-----G-VD-HKINFIESEALSVLDQLLK  140 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~-~~-~~v~~~~~d~~~~~~~~~~  140 (237)
                      ..++.+|||+|||+|..+..+++..+++.+|+++|+++.+++.++++++..     | .. ++++++++|+.+.... ..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~-~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA-EP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC-BS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc-cc
Confidence            456789999999999999999988754789999999999999999988765     3 22 5799999998765211 00


Q ss_pred             cCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          141 DSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .+...++||+|++....   .+...+++++.++|+|||.+++.+...
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            01224799999987642   446789999999999999999987654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.48  E-value=3.2e-13  Score=114.80  Aligned_cols=104  Identities=14%  Similarity=0.145  Sum_probs=85.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....++++|||+|||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++++|+.+..       ...
T Consensus        60 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~  129 (340)
T 2fyt_A           60 PHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH-------LPV  129 (340)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-------CSC
T ss_pred             hhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-------CCC
Confidence            34567889999999999999999886 2 45999999996 99999999999998788999999987651       123


Q ss_pred             CceeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEE
Q 026547          146 GSFDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       146 ~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ++||+|++...      ......+++.+.++|+|||.++.
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            78999997641      12345688888999999999984

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.48  E-value=2e-13  Score=108.04  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+....++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++    .+. .+++++++|+.+..  
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~--  103 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWT--  103 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCC--
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCC--
Confidence            3445555555667789999999999999999986   5699999999999999888    343 46999999987761  


Q ss_pred             HhhcCCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                            ..++||+|++......     ...+++.+.+.|+|||.+++.+..
T Consensus       104 ------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          104 ------PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             ------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                  2589999998764332     267899999999999999987654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.48  E-value=5.1e-13  Score=112.96  Aligned_cols=109  Identities=17%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +.......++++|||+|||+|..+..+++. + ..+|+++|++ .+++.|+++++..++.++++++++|+.+..  +   
T Consensus        30 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~---  101 (328)
T 1g6q_1           30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L---  101 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C---
T ss_pred             HHhhHhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C---
Confidence            333445567889999999999999999885 2 4599999999 699999999999999889999999987752  1   


Q ss_pred             CCCCCceeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          142 SENEGSFDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       142 ~~~~~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                        ..++||+|+++..      ......++..+.++|+|||.++.+
T Consensus       102 --~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1          102 --PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             --SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             --CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence              1378999998632      233567888888999999999854

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.48  E-value=1.7e-13  Score=108.78  Aligned_cols=110  Identities=19%  Similarity=0.188  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+. ..++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++.     .+++++++|+.+..  
T Consensus        34 ~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~--  102 (220)
T 3hnr_A           34 YEDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFE--  102 (220)
T ss_dssp             HHHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCC--
T ss_pred             HHHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcC--
Confidence            344554443 347789999999999999999985   5699999999999999998763     46899999987751  


Q ss_pred             HhhcCCCCCceeEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          138 LLKDSENEGSFDYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                           . .++||+|++.......     ..+++.+.+.|+|||.+++.+..+
T Consensus       103 -----~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          103 -----V-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             -----C-CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             -----C-CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence                 1 2799999988653332     238899999999999999987554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.47  E-value=7e-13  Score=111.09  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=94.7

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......++..++...++.+|||+|||+|..+++++..+...++|+++|+++.+++.+++++++.|+. +++++++|+.+
T Consensus        86 ~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~  164 (309)
T 2b9e_A           86 LQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLA  164 (309)
T ss_dssp             ECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGG
T ss_pred             EECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHh
Confidence            34444555566667778889999999999999999988754689999999999999999999999985 59999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC--------------------c-------HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN--------------------Y-------WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~--------------------~-------~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ......    ...+||.|++|.+.+.                    .       .++++.+.++++ ||.|+...+..
T Consensus       165 ~~~~~~----~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          165 VSPSDP----RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             SCTTCG----GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             cCcccc----ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            532110    0157999999854311                    0       134566667776 99999887764

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.47  E-value=1.6e-13  Score=118.11  Aligned_cols=106  Identities=13%  Similarity=0.174  Sum_probs=88.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++++|||+|||+|..++.+++. + ..+|+++|++ .+++.|+++++..++.++++++++|+.+...        .+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~  128 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL--------PE  128 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC--------SS
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc--------CC
Confidence            4457789999999999999999986 2 3499999999 9999999999999998899999999977521        37


Q ss_pred             ceeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +||+|+++..      ......+++.+.++|+|||+++++...
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            8999998641      133566888888999999999987654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.47  E-value=3.3e-13  Score=115.66  Aligned_cols=110  Identities=14%  Similarity=0.086  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||||||+|..+..+++..| +.+++++|+ +.+++.|+++++..++.++++++.+|..+....+      .++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------PTGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------CCCc
Confidence            5678999999999999999999987 789999999 9999999999988888789999999987631001      2689


Q ss_pred             eEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          149 DYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       149 D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      |+|++...-.+     ...+++++.+.|+|||.+++.+..+..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            99998654332     246789999999999999888776543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.47  E-value=3.8e-13  Score=115.52  Aligned_cols=107  Identities=10%  Similarity=0.114  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|..+.+         ..+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~---------p~~~  269 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI---------PDGA  269 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC---------CSSC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC---------CCCc
Confidence            4568999999999999999999987 789999999 9999999999999998889999999987321         2389


Q ss_pred             eEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          149 DYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       149 D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      |+|++...-.++     ..+++++.+.|+|||.+++.+..+..
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999987543322     36899999999999999998776533

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.47  E-value=8.1e-13  Score=105.20  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++..+   +|+++|+++.+++.++++++..+  .+++++++|+.+..       ...++|
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~-------~~~~~~  104 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS-------FEDKTF  104 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC-------SCTTCE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC-------CCCCcE
Confidence            3467999999999999999988643   99999999999999999998776  46999999987631       124689


Q ss_pred             eEEEEeCC--Cc---CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDAD--KV---NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~--~~---~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++...  ..   +...+++.+.+.|+|||.+++....
T Consensus       105 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          105 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            99998765  32   2457889999999999999887554

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=5.8e-13  Score=104.46  Aligned_cols=109  Identities=12%  Similarity=-0.034  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+.... +.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++.      .+++++++|+.+..  
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--   97 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLS--   97 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGG--
T ss_pred             HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccc--
Confidence            344555555444 789999999999999999885   559999999999999999873      36899999987742  


Q ss_pred             HhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +     ..++||+|++....     .....+++.+.+.|+|||.+++....
T Consensus        98 ~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A           98 D-----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             G-----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             c-----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            1     24899999986532     35678999999999999999997654

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.47  E-value=2.4e-13  Score=110.38  Aligned_cols=99  Identities=10%  Similarity=0.195  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.+++++.    ..+++++++|+.+..       ...++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~-------~~~~~f  109 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIA-------IEPDAY  109 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCC-------CCTTCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCC-------CCCCCe
Confidence            3678999999999999999998633  399999999999999998764    357999999987641       124799


Q ss_pred             eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|++....   .+...+++.+.+.|+|||.+++.
T Consensus       110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            999987642   45678999999999999999996

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.47  E-value=3e-13  Score=108.65  Aligned_cols=104  Identities=17%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--HHHhhcCCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--DQLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~  145 (237)
                      ..++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+.++.+..   .+++++++|+.+..  +..      .
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~------~  145 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRML------I  145 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGG------C
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhccc------C
Confidence            345679999999999999999998643679999999999888877776654   46999999987642  211      4


Q ss_pred             CceeEEEEeCCCcCc-HHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNY-WNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++||+|+++...... ..+++.+.+.|+|||.+++.
T Consensus       146 ~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          146 AMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            789999998663332 34578899999999999984

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.47  E-value=4.2e-13  Score=108.00  Aligned_cols=110  Identities=14%  Similarity=0.110  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhhc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           58 AGQLMAMLLKLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        58 ~~~~l~~l~~~~--~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ..+.+..++...  ++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++...+.  +++++++|+.+..
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   97 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC
Confidence            344444444433  6789999999999999999885   46899999999999999999987765  6899999987642


Q ss_pred             HHHhhcCCCCCceeEEEEeC-CC------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          136 DQLLKDSENEGSFDYAFVDA-DK------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~-~~------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                             . .++||+|++.. .-      .....+++.+.++|+|||.++++
T Consensus        98 -------~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 -------I-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -------C-SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------c-cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                   1 37899999875 32      23467889999999999999985

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.46  E-value=3.1e-13  Score=116.44  Aligned_cols=115  Identities=13%  Similarity=0.151  Sum_probs=92.3

Q ss_pred             ccHHHHHHHHHHHhhc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547           54 TAPDAGQLMAMLLKLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~-----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ..+....++..+....     ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++++..++.  +++++
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~  286 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALH  286 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEE
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEE
Confidence            3455566666665433     5679999999999999999985   569999999999999999999988864  89999


Q ss_pred             ccchHHHHHHhhcCCCCCceeEEEEeCCC--------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          129 SEALSVLDQLLKDSENEGSFDYAFVDADK--------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|+.+....       .++||+|+++..-        .....+++.+.+.|+|||.+++.
T Consensus       287 ~D~~~~~~~-------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          287 SDVDEALTE-------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             CSTTTTSCT-------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cchhhcccc-------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            999776421       3799999997432        22457899999999999999884

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.46  E-value=6.1e-13  Score=108.26  Aligned_cols=101  Identities=21%  Similarity=0.205  Sum_probs=82.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++ . +..++++++++|+.+..       ...++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~~-------~~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAIP-------LPDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSCC-------SCTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccCC-------CCCCC
Confidence            456789999999999999999875   569999999999999999987 2 33357999999986541       12478


Q ss_pred             eeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|++....   .+...+++.+.+.|+|||.+++.
T Consensus       105 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          105 VHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            9999987543   24578999999999999999886

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.46  E-value=5.8e-13  Score=105.77  Aligned_cols=109  Identities=11%  Similarity=0.111  Sum_probs=84.5

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +.......++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++       .+++++.++..+......  
T Consensus        44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~--  111 (227)
T 3e8s_A           44 ILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV--  111 (227)
T ss_dssp             HHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS--
T ss_pred             HHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc--
Confidence            333444556789999999999999999885   56999999999999999886       347788888776522110  


Q ss_pred             CCCCCceeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          142 SENEGSFDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       142 ~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       ....+||+|++...  ..+...+++.+.+.|+|||.+++....
T Consensus       112 -~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          112 -PVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             -CCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -ccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence             12356999998643  456789999999999999999997653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.46  E-value=8.4e-13  Score=109.37  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+...+++++++|+.+..  +    ...++|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~f  134 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH--M----DLGKEF  134 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC--C----CCSSCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc--c----CCCCCc
Confidence            56789999999999999988875 2 45999999999999999999998887778999999987641  1    014789


Q ss_pred             eEEEEeCCC-------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADK-------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|++....       .....+++.+.++|+|||.+++...
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  175 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP  175 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999987543       2246789999999999999998653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.45  E-value=6.6e-13  Score=113.17  Aligned_cols=103  Identities=16%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++..++.++++++.+|+.+..  +      .+
T Consensus        47 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--~------~~  115 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L------PE  115 (348)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SS
T ss_pred             ccCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--C------CC
Confidence            4457789999999999999999885 3 46999999996 88999999999998888999999987751  1      36


Q ss_pred             ceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          147 SFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       147 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +||+|++...     .......+..+.++|+|||.+++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            8999998743     234567788888999999999864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.45  E-value=3.5e-13  Score=107.72  Aligned_cols=105  Identities=22%  Similarity=0.270  Sum_probs=85.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC----CcEEEEeccchHHHHHHhhcCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD----HKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...+..    .+++++.+|+.+..       .
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS-------F   97 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC-------S
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC-------C
Confidence            346789999999999999999986   569999999999999999998877762    46899999987642       1


Q ss_pred             CCCceeEEEEeCCCcC---cH---HHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVN---YW---NYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~---~~---~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..++||+|++......   ..   .+++.+.+.|+|||.+++.+.
T Consensus        98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            2478999998754322   23   789999999999999998754

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.45  E-value=1.3e-13  Score=110.51  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=80.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-chHHHHH---HHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVN-RETYEIG---LPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~-~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .++.+|||||||+|..+..+++..+ +.+|+|||++ +.+++.|   +++.+..++. +++++++|+.+.....      
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~------   94 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFEL------   94 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGG------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhc------
Confidence            4567999999999999999997655 7899999999 5666655   7777777764 5999999987762211      


Q ss_pred             CCceeEEEEeCCC--------cCcHHHHHHHHccCCCCeEEEE
Q 026547          145 EGSFDYAFVDADK--------VNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       145 ~~~~D~i~id~~~--------~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+.+|.|++....        .....+++++.++|+|||.+++
T Consensus        95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            3678888876431        1245789999999999999998

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.45  E-value=1.4e-12  Score=112.15  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---------------CCCCcEEEEeccchH
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---------------GVDHKINFIESEALS  133 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~  133 (237)
                      .++.+|||+|||+|..++.++...+ ..+|+++|+++++++.++++++.+               ++.+ ++++++|+.+
T Consensus        46 ~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~  123 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANR  123 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHH
T ss_pred             cCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHH
Confidence            3788999999999999999999876 578999999999999999999998               7754 9999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+...      ..+||+|++|.. ....++++.+.+.|++||++++..
T Consensus       124 ~~~~~------~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          124 LMAER------HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHS------TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhc------cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            87653      368999998863 334789999999999999887753

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.44  E-value=1.4e-13  Score=110.18  Aligned_cols=93  Identities=14%  Similarity=0.064  Sum_probs=77.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC-CC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN-EG  146 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~-~~  146 (237)
                      ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++      .++++++++|+.+.++      .. .+
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~------~~~~~  110 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELP------AGLGA  110 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCC------TTCCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccC------CcCCC
Confidence            356789999999999999999986   56999999999999999987      2468999999865433      12 47


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      +||+|++..   ....+++.+.++|+|||.++
T Consensus       111 ~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          111 PFGLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             CEEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             CEEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            899999873   45577888999999999999

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.44  E-value=3.5e-13  Score=113.96  Aligned_cols=106  Identities=11%  Similarity=0.060  Sum_probs=89.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+++.+| +.+++++|+ +.+++.+++++...++.++++++.+|..+.+         ..+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------p~~~D  237 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL---------PAGAG  237 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------CCSCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC---------CCCCc
Confidence            457999999999999999999987 789999999 9999999999999998889999999986421         23899


Q ss_pred             EEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          150 YAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       150 ~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      +|++...-.+     ...+++++.+.|+|||.+++.+.....
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            9998754322     356899999999999999998776544

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.44  E-value=7.4e-13  Score=112.33  Aligned_cols=101  Identities=19%  Similarity=0.177  Sum_probs=87.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..++. ++  + ..+|+++|+++.+++.++++++.+++.++++++++|+.+.+          ++
T Consensus       193 ~~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~  258 (336)
T 2yx1_A          193 VSLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VK  258 (336)
T ss_dssp             CCTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CC
T ss_pred             cCCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CC
Confidence            35778999999999999999 77  3 67999999999999999999999998778999999998763          68


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ||+|++|.+.. ...+++.+.++|+|||++++....
T Consensus       259 fD~Vi~dpP~~-~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          259 GNRVIMNLPKF-AHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             EEEEEECCTTT-GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CcEEEECCcHh-HHHHHHHHHHHcCCCCEEEEEEee
Confidence            99999986432 347889999999999999887654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.44  E-value=2.4e-13  Score=109.59  Aligned_cols=99  Identities=15%  Similarity=0.199  Sum_probs=81.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+..+++.   +.+|+++|+++.+++.++++         ++++.+|+.+.+..+     ..++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-----~~~~  101 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-----PDKY  101 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-----CTTC
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-----CCCC
Confidence            446689999999999999999886   45899999999999988874         788999988875433     2589


Q ss_pred             eeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ||+|++.....     ....+++.+.++|+|||.+++....
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            99999875422     3478999999999999999997654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.44  E-value=9.4e-13  Score=112.12  Aligned_cols=108  Identities=16%  Similarity=0.116  Sum_probs=90.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|..+..+..      .++||+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~~D~  251 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGAADV  251 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCCEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCCccE
Confidence            78999999999999999999987 789999999 8999999999999998889999999987653111      367999


Q ss_pred             EEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          151 AFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       151 i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      |++...-.+     ...+++++.+.|+|||.+++.+..+..
T Consensus       252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            998754332     357899999999999999988776543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.44  E-value=6.3e-13  Score=113.95  Aligned_cols=106  Identities=15%  Similarity=0.225  Sum_probs=85.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...+++.|||||||+|.+++..|++.  ..+|++||.++ +++.|++.++.+|+.++|+++++++.+.-  +      .+
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--l------pe  148 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--L------PE  148 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SS
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--C------Cc
Confidence            34578999999999999998888753  35899999986 88999999999999999999999997752  1      47


Q ss_pred             ceeEEEEeC------CCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDA------DKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~------~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ++|+|+...      .......++....++|+|||.++.+.+.
T Consensus       149 ~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~at  191 (376)
T 4hc4_A          149 QVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAE  191 (376)
T ss_dssp             CEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred             cccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccce
Confidence            899998632      2234567777778999999999876553

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.44  E-value=3e-13  Score=112.69  Aligned_cols=104  Identities=9%  Similarity=0.099  Sum_probs=84.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...+..  .+++++++|+.+..        ..++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA--------LDKR  150 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC--------CSCC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC--------cCCC
Confidence            3459999999999999999985   568999999999999999999877632  57999999987742        1489


Q ss_pred             eeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ||+|++...      ......+++.+.++|+|||.+++.....
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            999986421      1124688999999999999999976543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=2.7e-13  Score=110.25  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=83.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.++++      .++++++++|+.+..  .      .++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~------~~~   95 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--P------AQK   95 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--C------SSC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--c------cCC
Confidence            34677999999999999999998876 77999999999999999887      246899999987653  1      478


Q ss_pred             eeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ||+|++....   .+...+++.+.+.|+|||.+++...
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            9999987543   3467889999999999999998653

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.43  E-value=6.1e-13  Score=107.76  Aligned_cols=103  Identities=8%  Similarity=0.090  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..++...  ..+|+++|+++.+++.+++++...   .+++++++|+.+..       ...++|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~~f  159 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT-------LPPNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC-------CCSSCE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCC-------CCCCCe
Confidence            457899999999999999988764  358999999999999999987543   46999999987641       124789


Q ss_pred             eEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++......     ...+++.+.++|+|||.+++.+..
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  199 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence            99998765332     467899999999999999987643

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.43  E-value=1.1e-13  Score=112.39  Aligned_cols=119  Identities=13%  Similarity=0.100  Sum_probs=86.0

Q ss_pred             HHHHHHHhhc---CCCEEEEEcccccHHHHHHHhh--CCCCCEEEEEeCCchHHHHHHHHHHhc---CCCCc--------
Q 026547           60 QLMAMLLKLV---NAKKTIEIGVFTGYSLLLTALT--IPEDGQIMAIDVNRETYEIGLPVIKKA---GVDHK--------  123 (237)
Q Consensus        60 ~~l~~l~~~~---~~~~vLeiG~G~G~~~~~la~~--~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~--------  123 (237)
                      .++..+....   ++.+|||+|||+|..++.++..  .+ ..+|+++|+++.+++.|++++...   ++.++        
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            4444444332   4569999999999999999887  33 569999999999999999988765   44322        


Q ss_pred             -----------------EE-------------EEeccchHHHHHHhhcCCCCCceeEEEEeCCC------------cCcH
Q 026547          124 -----------------IN-------------FIESEALSVLDQLLKDSENEGSFDYAFVDADK------------VNYW  161 (237)
Q Consensus       124 -----------------v~-------------~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~------------~~~~  161 (237)
                                       ++             ++++|+.+..+.....  ...+||+|+++...            ..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL--AGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH--TTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeeccccccccccccc--CCCCceEEEeCCCeeccccccccccccHHH
Confidence                             66             9999987754210000  02589999987431            1234


Q ss_pred             HHHHHHHccCCCCeEEEEeC
Q 026547          162 NYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       162 ~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+++.+.++|+|||++++.+
T Consensus       195 ~~l~~~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEeC
Confidence            78899999999999999843

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.43  E-value=2e-12  Score=109.18  Aligned_cols=106  Identities=16%  Similarity=0.219  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++..+ +.+++++|++ .+++.+++++...++.++++++.+|..+.  .+      .+.|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~  233 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDY  233 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCC
Confidence            5678999999999999999999886 7899999999 99999999999988878899999998764  11      2459


Q ss_pred             eEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          149 DYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |+|++.....+     ...+++.+.+.|+|||.+++.+...
T Consensus       234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             cEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            99998654333     3578999999999999888876654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=6.3e-13  Score=109.56  Aligned_cols=102  Identities=18%  Similarity=0.119  Sum_probs=83.5

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..+...++.+|||+|||+|..+..++.  + +.+|+++|+++.+++.+++++      ++++++++|+.+..        
T Consensus        51 ~~l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~--------  113 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFR--------  113 (279)
T ss_dssp             HHHCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCC--------
T ss_pred             HHhCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCC--------
Confidence            344556778999999999999999998  3 679999999999999998865      35889999987641        


Q ss_pred             CCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..++||+|++....   .+...+++++.+.|+|||.+++...
T Consensus       114 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          114 VDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             CSSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            14789999987543   4567899999999999999998643

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.43  E-value=7.9e-13  Score=104.96  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=78.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH----HhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI----KKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ...++.+|||+|||+|..+..+++..| +.+|+++|+++.+++.+.+..    ...+. ++++++++|+.+. +      
T Consensus        24 ~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l-~------   94 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERL-P------   94 (218)
T ss_dssp             HTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTC-C------
T ss_pred             hccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhC-C------
Confidence            355678999999999999999999876 789999999999887543332    23444 3699999999774 1      


Q ss_pred             CCCCceeEEEEeCC--------CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          143 ENEGSFDYAFVDAD--------KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       143 ~~~~~~D~i~id~~--------~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +..++ |.|++...        ..+...+++.+.++|+|||.+++.
T Consensus        95 ~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           95 PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            11344 77765432        122367899999999999999984

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.42  E-value=5.4e-13  Score=114.47  Aligned_cols=104  Identities=15%  Similarity=0.167  Sum_probs=87.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++++...++.++++++.+|..+.+         ...
T Consensus       180 ~~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  248 (374)
T 1qzz_A          180 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVT  248 (374)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCC
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------CCC
Confidence            34678999999999999999999886 789999999 9999999999999888878999999986532         245


Q ss_pred             eeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ||+|++.....+     ...+++++.+.|+|||.+++.+.
T Consensus       249 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999998764332     23689999999999998888665

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.42  E-value=2.9e-12  Score=109.44  Aligned_cols=106  Identities=12%  Similarity=0.074  Sum_probs=88.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+..+++..| +.+++++|+ +.+++.++++++..++.++++++.+|+.+. +        ...
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~  256 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-S--------YPE  256 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-C--------CCC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-C--------CCC
Confidence            45678999999999999999999887 789999999 999999999999988888899999998764 1        134


Q ss_pred             eeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +|+|++...-.+     ...+++++.+.|+|||.+++.+...
T Consensus       257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  298 (359)
T 1x19_A          257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI  298 (359)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred             CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            499998754322     4678999999999999998776554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.42  E-value=2.1e-13  Score=110.99  Aligned_cols=97  Identities=13%  Similarity=0.227  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhhc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547           56 PDAGQLMAMLLKLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE  130 (237)
Q Consensus        56 ~~~~~~l~~l~~~~-----~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (237)
                      +....++..+....     ++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|+++++..++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            45556666665433     467999999999999999988765 679999999999999999999999988889999999


Q ss_pred             chH-HHHHHhhcCCCCCceeEEEEeC
Q 026547          131 ALS-VLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       131 ~~~-~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      +.+ +...+...  ..++||+|+++.
T Consensus       125 ~~~~~~~~~~~~--~~~~fD~i~~np  148 (254)
T 2h00_A          125 QKTLLMDALKEE--SEIIYDFCMCNP  148 (254)
T ss_dssp             TTCSSTTTSTTC--CSCCBSEEEECC
T ss_pred             hhhhhhhhhhcc--cCCcccEEEECC
Confidence            765 22222100  015899999873

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.42  E-value=3.9e-13  Score=106.17  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=80.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++       +++++.+|+.+..        ..+
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--------~~~  101 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--------AID  101 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--------CCS
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--------CCC
Confidence            3456789999999999999999985   569999999999999999987       3677888886653        158


Q ss_pred             ceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +||+|++.....     ....+++.+.+.|+|||.+++....
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  143 (211)
T 3e23_A          102 AYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKS  143 (211)
T ss_dssp             CEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            999999875432     3457899999999999999997543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.42  E-value=1.4e-12  Score=107.55  Aligned_cols=111  Identities=9%  Similarity=0.010  Sum_probs=83.4

Q ss_pred             CCCEEEEEcccc---cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH--hh--cC
Q 026547           70 NAKKTIEIGVFT---GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL--LK--DS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~---G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~--~~  142 (237)
                      ...+|||||||+   |..+..+++..+ +.+|+++|+++.+++.|++++..   .++++++++|+.+....+  ..  +.
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   988766666666 78999999999999999998843   357999999987642110  00  00


Q ss_pred             CCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          143 ENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       143 ~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ....+||+|++....     .....+++++.+.|+|||.+++.+...
T Consensus       153 ~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            113589999876432     135789999999999999999987653

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.42  E-value=8.8e-13  Score=112.63  Aligned_cols=105  Identities=15%  Similarity=0.195  Sum_probs=88.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|..+..+++..+ +.+++++|+ +.+++.+++++...++.++++++.+|..+.+         ...
T Consensus       181 ~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  249 (360)
T 1tw3_A          181 WTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRK  249 (360)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSC
T ss_pred             CccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---------CCC
Confidence            34678999999999999999999886 789999999 9999999999999888778999999986532         245


Q ss_pred             eeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ||+|++.....+     ...+++++.+.|+|||.+++.+..
T Consensus       250 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          250 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            999998754322     246899999999999998887665

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.42  E-value=4.7e-13  Score=109.29  Aligned_cols=96  Identities=13%  Similarity=0.046  Sum_probs=79.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++.      +++++++|+.+...        .++||
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~--------~~~fD  112 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL--------GRRFS  112 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC--------SCCEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc--------cCCcC
Confidence            4589999999999999999875   4589999999999999998752      58999999877421        47999


Q ss_pred             EEEEeC-CCc------CcHHHHHHHHccCCCCeEEEEeCc
Q 026547          150 YAFVDA-DKV------NYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       150 ~i~id~-~~~------~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|++.. ...      ....+++.+.++|+|||.++++..
T Consensus       113 ~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          113 AVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             EEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            999875 222      344679999999999999999754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.42  E-value=1.1e-12  Score=105.49  Aligned_cols=98  Identities=19%  Similarity=0.240  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++.    .+|+++|+++.+++.+++++...+  .+++++++|+.+..        ..++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~--------~~~~f   97 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE--------LPEPV   97 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC--------CSSCE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC--------CCCCc
Confidence            34679999999999999998874    699999999999999999988766  36899999987641        13789


Q ss_pred             eEEEEeC-CC------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDA-DK------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~-~~------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|++.. ..      .....+++.+.++|+|||.++++
T Consensus        98 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           98 DAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9999864 11      23457889999999999999984

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.41  E-value=5.6e-13  Score=112.72  Aligned_cols=103  Identities=8%  Similarity=0.045  Sum_probs=87.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      .+|||+|||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|..+.   +      .++||+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v  237 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIY  237 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEE
Confidence            8999999999999999999887 789999999 999999999998887777899999998662   1      3679999


Q ss_pred             EEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          152 FVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       152 ~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      ++.....+     ...+++++.+.|+|||.+++.+....
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            98765432     23789999999999999998876643

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.41  E-value=8.6e-13  Score=110.31  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=77.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-----cEEEEeccchHH--HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-----KINFIESEALSV--LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~--~~~~~~~~  142 (237)
                      ++.+|||||||+|..+..++..  ...+|+|+|+++.+++.|++.....+...     ++++.++|+..-  ...+.+ .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~-~  124 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVRE-V  124 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHT-T
T ss_pred             CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhc-c
Confidence            3679999999999866555543  24699999999999999999987766421     266777776210  011111 0


Q ss_pred             CCCCceeEEEEeCCC------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADK------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...++||+|++....      .+...+++.+.++|+|||++++...
T Consensus       125 ~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          125 FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            124799999875321      3457899999999999999998765

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.41  E-value=1.1e-12  Score=105.49  Aligned_cols=108  Identities=13%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhh
Q 026547           61 LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLK  140 (237)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  140 (237)
                      .+..+....++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++..    .+++++++|+.+..     
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~-----  102 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH-----  102 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC-----
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc-----
Confidence            3444555557789999999999999999885 2 23999999999999999887532    36899999987642     


Q ss_pred             cCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          141 DSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                        ...++||+|++....   .+...+++.+.++|+|||.+++..
T Consensus       103 --~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          103 --LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             --CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence              124789999987542   345789999999999999999865

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.40  E-value=3.9e-12  Score=103.20  Aligned_cols=149  Identities=15%  Similarity=0.069  Sum_probs=103.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhh------CCCCCEEEEEe-----CCch-------------------HHHHHHHHH---
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALT------IPEDGQIMAID-----VNRE-------------------TYEIGLPVI---  115 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~------~~~~~~v~~vD-----~~~~-------------------~~~~a~~~~---  115 (237)
                      .-+..|+|+||..|.++..++..      .....+|+++|     +.+.                   ..+..++.+   
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            45779999999999999887642      12357999999     3221                   111122222   


Q ss_pred             ---HhcCC-CCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-cCcHHHHHHHHccCCCCeEEEEeCcCCCCcccC
Q 026547          116 ---KKAGV-DHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-VNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAM  190 (237)
Q Consensus       116 ---~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~  190 (237)
                         +..|. .++++++.|++.+.++.+.++ .+..+||+|++|++. ..+..+++.+.++|+|||+|++||+.+.+   .
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~-~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~---w  223 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAE-NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK---W  223 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHH-CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT---C
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHh-CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC---C
Confidence               23455 478999999999999886543 123579999999986 34567899999999999999999974322   1


Q ss_pred             CCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEE
Q 026547          191 SEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICW  234 (237)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~  234 (237)
                      +             .+++.++.+....+.....+|...+....+
T Consensus       224 ~-------------G~~~A~~ef~~~~~~~i~~~p~~~~~~y~~  254 (257)
T 3tos_A          224 P-------------GENIAMRKVLGLDHAPLRLLPGRPAPAYLR  254 (257)
T ss_dssp             T-------------HHHHHHHHHTCTTSSCCEECTTCSCCEEEE
T ss_pred             h-------------HHHHHHHHHHhhCCCeEEEccCCCCCEEEE
Confidence            1             243444444445567778889888776655

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=6.5e-13  Score=108.57  Aligned_cols=110  Identities=13%  Similarity=0.053  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      .+...+.+.......++.+|||+|||+|..+..+++   ++.+|+++|+++.+++.++++.       +++++++|+.+.
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~   88 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL   88 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC
Confidence            344555555555566788999999999999999997   3689999999999988776543       699999998764


Q ss_pred             HHHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          135 LDQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .       ...++||+|++...   ..+...+++++.+.|+ ||.+++.+.
T Consensus        89 ~-------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           89 A-------LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             C-------SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             C-------CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence            1       22479999998754   3556789999999999 997766554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.40  E-value=8.9e-13  Score=113.61  Aligned_cols=106  Identities=19%  Similarity=0.104  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-EEEEeccchHHHH-HHhhcCCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-INFIESEALSVLD-QLLKDSENEG  146 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~-~~~~~~~~~~  146 (237)
                      .++.+|||++||+|..++.++...+...+|+++|+++..++.++++++.+|+.++ ++++++|+.+++. .+      .+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~  124 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GF  124 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SS
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CC
Confidence            3467999999999999999998754126899999999999999999999999877 9999999998876 54      36


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +||+|++|. .....++++.+.++|++||++++..
T Consensus       125 ~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          125 GFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            899999997 3334679999999999999887754

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.40  E-value=9.4e-13  Score=100.36  Aligned_cols=100  Identities=10%  Similarity=0.019  Sum_probs=81.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++      .++++++.+| ..         ...
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~~---------~~~   73 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-KE---------IPD   73 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-GG---------SCT
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-CC---------CCC
Confidence            345677799999999999999999864   3999999999999999987      2468999998 11         125


Q ss_pred             CceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          146 GSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       146 ~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ++||+|++....   .+...+++.+.+.|+|||.+++.+...
T Consensus        74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  115 (170)
T 3i9f_A           74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK  115 (170)
T ss_dssp             TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence            789999987543   345788999999999999999987654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=1.8e-12  Score=104.68  Aligned_cols=116  Identities=12%  Similarity=0.025  Sum_probs=85.2

Q ss_pred             HHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           59 GQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...+..+.. ..++.+|||+|||+|..+..+++..+   +|+++|+++.+++.+++++.    ..+++++++|+.+....
T Consensus        44 ~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~  116 (245)
T 3ggd_A           44 VVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQA  116 (245)
T ss_dssp             HHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHH
T ss_pred             HHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccc
Confidence            333444433 34567999999999999999998754   89999999999999998762    23699999998774332


Q ss_pred             HhhcCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..-.  ...+||+|++.....     ....+++.+.+.|+|||.+++.+..
T Consensus       117 ~~~~--~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          117 AQIH--SEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHH--HHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cccc--cccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            1000  013599999875432     3468999999999999987776553

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.39  E-value=6.9e-13  Score=112.83  Aligned_cols=100  Identities=18%  Similarity=0.194  Sum_probs=83.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ..+.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.+++++...+..  ++++.+|..+..         .++|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~~f  262 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KGRF  262 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CSCE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cCCe
Confidence            3567999999999999999999876 679999999999999999999988864  567888886542         3789


Q ss_pred             eEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKV--------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|+++..-.        ....+++.+.+.|+|||.+++.
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999975432        2367899999999999998874

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.39  E-value=2e-12  Score=111.22  Aligned_cols=116  Identities=22%  Similarity=0.206  Sum_probs=91.4

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +.+..+..+..++ ..++.+|||+|||+|..++.++...+ .++|+|+|+++.+++.|+++++.+|+.++++++++|+.+
T Consensus       202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~  279 (373)
T 3tm4_A          202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ  279 (373)
T ss_dssp             CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred             ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence            4566667676777 67788999999999999999998754 569999999999999999999999987789999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCC-------cC----cHHHHHHHHccCCCCeEEEE
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADK-------VN----YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~-------~~----~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ...       ..++||+|+++.+-       ..    +..+++.+.+.| +|+.+++
T Consensus       280 ~~~-------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          280 LSQ-------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             GGG-------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             CCc-------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            632       14789999998541       11    356777787877 4444444

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.38  E-value=2.2e-12  Score=110.89  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=83.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++++|||+| |+|..++.++...+ ..+|+++|+++.+++.|+++++..|+. +++++++|+.+.++..     ..++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCcc
Confidence            578999999 99999999988754 579999999999999999999999986 7999999998743310     136899


Q ss_pred             EEEEeCCCc--CcHHHHHHHHccCCCCe-EEEEe
Q 026547          150 YAFVDADKV--NYWNYHERLMKLLKVGG-IAVYD  180 (237)
Q Consensus       150 ~i~id~~~~--~~~~~~~~~~~~L~~gG-~lv~~  180 (237)
                      +|+++.+..  ....+++.+.+.|+||| ++++.
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            999986421  24678899999999999 44554

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.38  E-value=2.8e-12  Score=103.07  Aligned_cols=100  Identities=14%  Similarity=0.167  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++.    ...+++++++|+.+..       ...++|
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~-------~~~~~f  117 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLP-------FENEQF  117 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCS-------SCTTCE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCC-------CCCCCc
Confidence            46779999999999999999985   569999999999999988864    2356999999987642       125799


Q ss_pred             eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|++....   .+...+++.+.+.|+|||.+++...
T Consensus       118 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          118 EAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            999987543   3456889999999999999998764

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.38  E-value=1.7e-12  Score=114.97  Aligned_cols=100  Identities=16%  Similarity=0.167  Sum_probs=82.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||||||+|..++.+++. + ..+|+++|+++ +++.|+++++..++.++++++++|+.+..  +      .++|
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~------~~~f  225 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L------PEQV  225 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C------SSCE
T ss_pred             cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--c------CCCe
Confidence            46789999999999999998874 3 56999999998 99999999999999889999999997741  1      3689


Q ss_pred             eEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |+|+++..     .......+..+.+.|+|||.+++
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            99998643     12345566777899999999985

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.37  E-value=5.1e-12  Score=105.92  Aligned_cols=108  Identities=12%  Similarity=0.047  Sum_probs=83.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC------CCCcEEEEeccchHHHH--HHhhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG------VDHKINFIESEALSVLD--QLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~--~~~~~  141 (237)
                      ++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++...+      ...+++++++|+.+...  .+.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--  109 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR--  109 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS--
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc--
Confidence            6779999999999999998873 3 6799999999999999999887652      23469999999876420  010  


Q ss_pred             CCCCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          142 SENEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ...++||+|++......       ...+++.+.+.|+|||++++...
T Consensus       110 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          110 -DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             -STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence             01358999998754322       35789999999999999998754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.37  E-value=3.9e-12  Score=105.61  Aligned_cols=109  Identities=12%  Similarity=0.078  Sum_probs=77.1

Q ss_pred             CCCEEEEEcccccHHHHHHH----hhCCCCCEE--EEEeCCchHHHHHHHHHHhc-CCCCcEE--EEeccchHHHHHHhh
Q 026547           70 NAKKTIEIGVFTGYSLLLTA----LTIPEDGQI--MAIDVNRETYEIGLPVIKKA-GVDHKIN--FIESEALSVLDQLLK  140 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la----~~~~~~~~v--~~vD~~~~~~~~a~~~~~~~-~~~~~v~--~~~~d~~~~~~~~~~  140 (237)
                      ++.+|||||||+|..+..++    ...+ ..+|  +++|+++++++.|++.++.. ++ ++++  +..+++.+....+..
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence            45699999999998765443    3333 5554  99999999999999998764 33 3344  456666554322110


Q ss_pred             cCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          141 DSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       ++..++||+|++...   ..+....++++.++|+|||.+++..
T Consensus       130 -~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  172 (292)
T 2aot_A          130 -KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  172 (292)
T ss_dssp             -TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence             112478999998754   3456789999999999999998853

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.37  E-value=6.2e-12  Score=97.33  Aligned_cols=106  Identities=11%  Similarity=0.078  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..++..+  ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++      .+++++++|+.+..   
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~---  102 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQ---  102 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSC---
T ss_pred             HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCC---
Confidence            4455544  457789999999999999999885   569999999999999999875      24889999987641   


Q ss_pred             hhcCCCCCceeEEEEeCC-C-----cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          139 LKDSENEGSFDYAFVDAD-K-----VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~-~-----~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                          ...++||+|++... .     .....+++.+.+.|+|||.+++...
T Consensus       103 ----~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~  148 (195)
T 3cgg_A          103 ----ISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG  148 (195)
T ss_dssp             ----CCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence                12478999998732 2     2236789999999999999998643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.37  E-value=2.1e-12  Score=105.53  Aligned_cols=105  Identities=12%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH-HHHHHhh
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS-VLDQLLK  140 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  140 (237)
                      +...+...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.|++++....    +.....+... ....+  
T Consensus        37 il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~----v~~~~~~~~~~~~~~~--  107 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRC----VTIDLLDITAEIPKEL--  107 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSC----CEEEECCTTSCCCGGG--
T ss_pred             HHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcc----ceeeeeeccccccccc--
Confidence            333445567789999999999999999985   5699999999999999999875431    2222222111 00111  


Q ss_pred             cCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEe
Q 026547          141 DSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                          .++||+|+++....     .....++.+.++| |||.++++
T Consensus       108 ----~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          108 ----AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             ----TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             ----CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence                37899999986533     2356788888999 99999986

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.36  E-value=1.8e-12  Score=99.23  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             cHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+....++.. +..  .++.+|||+|||+|..+..+++.   . +|+++|+++.+++.          .++++++++|+.
T Consensus         7 ~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~   71 (170)
T 3q87_B            7 GEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADLL   71 (170)
T ss_dssp             CHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECSTT
T ss_pred             CccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECChh
Confidence            3445555555 444  56789999999999999999875   3 99999999999877          346899999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCc------------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKV------------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +.++        .++||+|+++..-.            ....+++.+.+.+ |||.+++..
T Consensus        72 ~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           72 CSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             hhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            7432        37899999875422            1356778888888 999998854

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.36  E-value=8.6e-12  Score=107.09  Aligned_cols=105  Identities=13%  Similarity=0.117  Sum_probs=80.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC-------
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE-------  143 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-------  143 (237)
                      +.+|||+|||+|..++.+|+.   ..+|+++|+++.+++.|+++++.+|+ ++++++.+|+.+.++.+.....       
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~  289 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGI  289 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHHSSCCCCTTGGGS
T ss_pred             CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHHhhcccccccccc
Confidence            578999999999999999984   45999999999999999999999988 4799999999998776532100       


Q ss_pred             --CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 --NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 --~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                        ...+||+|++|.+....   .+.+.+.|+++|.|++..+
T Consensus       290 ~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          290 DLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             ccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence              00379999999765432   2334455567887776554

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.36  E-value=3.1e-13  Score=110.12  Aligned_cols=110  Identities=20%  Similarity=0.107  Sum_probs=82.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC----------------------------
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV----------------------------  120 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----------------------------  120 (237)
                      .++.+|||+|||+|..+..++....  .+|+++|+++.+++.+++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4567999999999999988886422  4899999999999999998765431                            


Q ss_pred             CCcE-EEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-------CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          121 DHKI-NFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-------NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       121 ~~~v-~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..++ +++++|+.+..+..   +...++||+|++.....       ....+++.+.++|+|||.+++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG---GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT---TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCC---ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            0127 89999987643211   00127899999875433       4567899999999999999997754

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.36  E-value=2.5e-12  Score=106.18  Aligned_cols=109  Identities=19%  Similarity=0.217  Sum_probs=90.7

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--C--CCCcEEEEeccchHHHHHHhhc
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--G--VDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ....++++||-||-|.|..+.+++++.+ ..+|+.||+++..++.+++++...  +  -++|++++.+|+..++...   
T Consensus        79 ~~~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~---  154 (294)
T 3o4f_A           79 LAHGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT---  154 (294)
T ss_dssp             HHSSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS---
T ss_pred             hhCCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc---
Confidence            3456789999999999999999998754 679999999999999999998643  2  1479999999999987543   


Q ss_pred             CCCCCceeEEEEeCCCc-------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKV-------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         .++||+|++|....       -..++++.+.+.|+|||++++..
T Consensus       155 ---~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          155 ---SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             ---SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             ---cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence               58999999985321       24689999999999999999853

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.36  E-value=2.3e-12  Score=101.61  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=77.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+    + ..+++++|+++.+++.+++++      ++++++++|+.+..       ...++||
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-------~~~~~fD   97 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALP-------FPGESFD   97 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCC-------SCSSCEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCC-------CCCCcEE
Confidence            6779999999999988776    2 238999999999999999875      45889999986641       1247899


Q ss_pred             EEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          150 YAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +|++....   .+...+++.+.++|+|||.+++....
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            99987542   34578999999999999999997654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.36  E-value=2.5e-12  Score=103.12  Aligned_cols=99  Identities=9%  Similarity=0.069  Sum_probs=79.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++..+   +|+++|+++.+++.+++++      ++++++++|+.+..       . .++|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~-------~-~~~~  101 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR-------L-GRKF  101 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC-------C-SSCE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc-------c-CCCC
Confidence            4678999999999999999998743   8999999999999998864      35899999987642       1 3789


Q ss_pred             eEEEEeCC----C---cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          149 DYAFVDAD----K---VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~----~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |+|++...    .   .....+++.+.++|+|||.++++....
T Consensus       102 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          102 SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             cEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            99995432    1   234678999999999999999986543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.36  E-value=2.1e-12  Score=98.34  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=75.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH-----HHHhhcC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL-----DQLLKDS  142 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~~~  142 (237)
                      ..++.+|||+|||+|..+..+++.++++.+++++|+++ +++.           .+++++++|+.+..     +...   
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~---   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV---   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC---
Confidence            45677999999999999999998864368999999999 6532           46899999987642     1111   


Q ss_pred             CCCCceeEEEEeCCCc---Cc-----------HHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKV---NY-----------WNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~---~~-----------~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ..++||+|+++....   ..           ..+++.+.++|+|||.+++...
T Consensus        85 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           85 -GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             -TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence             137899999975422   11           5788999999999999998643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.36  E-value=7.4e-12  Score=109.28  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=90.0

Q ss_pred             CccccHHHHHHH-HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547           51 MMSTAPDAGQLM-AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        51 ~~~~~~~~~~~l-~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      +....+...+.+ ..+....++.+|||+|||+|..++.+++.   ..+|+++|+++.+++.|+++++.+++.  ++++++
T Consensus       270 F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~  344 (425)
T 2jjq_A          270 FFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVA  344 (425)
T ss_dssp             CCCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEEC
T ss_pred             ccccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEC
Confidence            444445554444 33333567789999999999999999985   459999999999999999999988875  999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCCcCc-HHHHHHHHccCCCCeEEEEeC
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADKVNY-WNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~-~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |+.+.++         .+||+|++|.+.... ..+++.+ ..|+|+|+++++.
T Consensus       345 d~~~~~~---------~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvsc  387 (425)
T 2jjq_A          345 SDREVSV---------KGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVSC  387 (425)
T ss_dssp             CTTTCCC---------TTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEES
T ss_pred             ChHHcCc---------cCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEEC
Confidence            9987632         389999999775443 3466666 4589999998863

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.35  E-value=1.8e-11  Score=96.21  Aligned_cols=110  Identities=10%  Similarity=0.115  Sum_probs=84.6

Q ss_pred             cHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           55 APDAGQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .+.....+...+.   ..++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.++++++..++  +++++++|+
T Consensus        31 ~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~  106 (207)
T 1wy7_A           31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDV  106 (207)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCG
T ss_pred             chHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECch
Confidence            4444444444443   336789999999999999999886 2 34899999999999999999988876  699999998


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEe
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .+.          ..+||+|+++.+.     .....+++.+.+.+  |+++++.
T Consensus       107 ~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A          107 SEF----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             GGC----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             HHc----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            774          2589999998642     23457888888888  6766554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.35  E-value=7.4e-12  Score=102.46  Aligned_cols=96  Identities=18%  Similarity=0.217  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++.++ +.+|+++|+++.+++.++++.      .++.++.+|+.+..       ...++|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~-------~~~~~f  149 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLP-------FSDTSM  149 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCS-------BCTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCC-------CCCCce
Confidence            4678999999999999999999875 679999999999999998864      35789999886531       124789


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|+.....    ..++.+.++|+|||.+++...
T Consensus       150 D~v~~~~~~----~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          150 DAIIRIYAP----CKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             EEEEEESCC----CCHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEeCCh----hhHHHHHHhcCCCcEEEEEEc
Confidence            999976542    357888999999999988643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.35  E-value=1.4e-12  Score=102.70  Aligned_cols=102  Identities=10%  Similarity=0.029  Sum_probs=81.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.+++++..   .++++++++|+.+. +      ...++|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~------~~~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D------FPSASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C------SCSSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C------CCCCcc
Confidence            4667999999999999999988633  2899999999999999998754   24689999998764 1      124789


Q ss_pred             eEEEEeCCC------------------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADK------------------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|++....                  .....+++.+.++|+|||.+++...
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            999975321                  1336789999999999999998654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.33  E-value=1e-11  Score=102.71  Aligned_cols=108  Identities=15%  Similarity=0.108  Sum_probs=75.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHH-----HhcCCC----CcEEEEeccchHHHHHH
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDV-NRETYEIGLPVI-----KKAGVD----HKINFIESEALSVLDQL  138 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~-----~~~~~~----~~v~~~~~d~~~~~~~~  138 (237)
                      .++++|||+|||+|..++.+++. + ..+|+++|+ ++.+++.+++++     +..++.    ++++++..+..+....+
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            46789999999999999998874 2 349999999 899999999999     555554    46888855533221111


Q ss_pred             hhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCC---C--CeEEEE
Q 026547          139 LKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLK---V--GGIAVY  179 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~---~--gG~lv~  179 (237)
                      ... ...++||+|++...   ......+++.+.++|+   |  ||.+++
T Consensus       156 ~~~-~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          156 QRC-TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HHH-HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             Hhh-ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            100 01378999987332   3346788999999999   9  997655

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.32  E-value=1.2e-11  Score=101.19  Aligned_cols=168  Identities=16%  Similarity=0.147  Sum_probs=101.7

Q ss_pred             cCCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHH----HHhhcCCCEEEEEcccc--cHH
Q 026547           11 SKGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAM----LLKLVNAKKTIEIGVFT--GYS   84 (237)
Q Consensus        11 ~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~----l~~~~~~~~vLeiG~G~--G~~   84 (237)
                      ....+...++|+|...-.   ...+.=.++-+...+.-.....+....-.++..    ++......+|||||||.  +.+
T Consensus        18 d~~~p~~aR~yd~~LgGk---~n~~~Dr~~~~~~~~~~P~~~~~a~~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~   94 (277)
T 3giw_A           18 DTESAHSARIYDYIIGGK---DYYPADKEAGDAMSREWPALPVHMRANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPN   94 (277)
T ss_dssp             CTTSCCHHHHHHHHTTCS---CCCHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSC
T ss_pred             CCCCCCcchhheeecCCc---cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccccCCCEEEEeCCCCCcccH
Confidence            445677889999998621   222222222222222111111222333344443    33334567999999997  445


Q ss_pred             HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee-----EEEEeCCCc-
Q 026547           85 LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD-----YAFVDADKV-  158 (237)
Q Consensus        85 ~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D-----~i~id~~~~-  158 (237)
                      +..++....++++|+++|.|+.+++.|++.+...+ ..+++++++|+.+....+... ...+.||     .|++...-+ 
T Consensus        95 ~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~-~~~~~~D~~~p~av~~~avLH~  172 (277)
T 3giw_A           95 LHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAP-ELRDTLDLTRPVALTVIAIVHF  172 (277)
T ss_dssp             HHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCH-HHHTTCCTTSCCEEEEESCGGG
T ss_pred             HHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhccc-ccccccCcCCcchHHhhhhHhc
Confidence            55555543338899999999999999999886543 247999999998753211000 0013344     455554321 


Q ss_pred             --C---cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          159 --N---YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       159 --~---~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                        .   ....++.+.+.|+|||++++....
T Consensus       173 l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~  202 (277)
T 3giw_A          173 VLDEDDAVGIVRRLLEPLPSGSYLAMSIGT  202 (277)
T ss_dssp             SCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             CCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence              1   357899999999999999998765

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.32  E-value=1.8e-11  Score=95.81  Aligned_cols=93  Identities=14%  Similarity=0.190  Sum_probs=73.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++.      +++++++|+.+.          .++|
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~----------~~~~  111 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SGKY  111 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CCCE
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC----------CCCe
Confidence            36779999999999999999886 3 4589999999999999999864      589999998774          2689


Q ss_pred             eEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          149 DYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       149 D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |+|+++..-     .....+++.+.+.+  |+++++.+
T Consensus       112 D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~  147 (200)
T 1ne2_A          112 DTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGN  147 (200)
T ss_dssp             EEEEECCCC-------CHHHHHHHHHHE--EEEEEEEE
T ss_pred             eEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEc
Confidence            999998652     22356888888887  66666553

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.31  E-value=1.6e-11  Score=107.60  Aligned_cols=104  Identities=12%  Similarity=0.129  Sum_probs=84.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..++.+++.   ..+|+++|+++.+++.|+++++..++. +++++++|+.+.++.+..   ..++|
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~---~~~~f  357 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPW---AKNGF  357 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGG---GTTCC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhh---hcCCC
Confidence            45679999999999999999985   569999999999999999999998875 799999999885432110   13689


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |+|++|.+.....+.++.+. .++|++++.++
T Consensus       358 D~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          358 DKVLLDPARAGAAGVMQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             SEEEECCCTTCCHHHHHHHH-HHCCSEEEEEE
T ss_pred             CEEEECCCCccHHHHHHHHH-hcCCCeEEEEE
Confidence            99999987666666666664 47899988775

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.31  E-value=1.2e-11  Score=100.86  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=77.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.++++..     .  .++++|+.+..       ...++||
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~-------~~~~~fD  116 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLP-------FPSGAFE  116 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCC-------SCTTCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCC-------CCCCCEE
Confidence            6789999999999999999875   5699999999999999988753     1  27888876541       1247899


Q ss_pred             EEEEeCC----CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          150 YAFVDAD----KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       150 ~i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|++...    ..+...+++.+.+.|+|||.+++...
T Consensus       117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            9998642    23467899999999999999998643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.30  E-value=1.2e-12  Score=107.15  Aligned_cols=110  Identities=19%  Similarity=0.046  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC---------------------------
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD---------------------------  121 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------------------  121 (237)
                      .++.+|||||||+|..+..++...  ..+|+++|+|+.+++.|+++++.....                           
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            356799999999998776655431  237999999999999999987653210                           


Q ss_pred             -CcEE-EEeccchHHHHHHhhcCCCCCceeEEEEeCCC-------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          122 -HKIN-FIESEALSVLDQLLKDSENEGSFDYAFVDADK-------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       122 -~~v~-~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       .++. ++++|+.+..+...   ...++||+|+....-       ..+...++++.++|||||.+++....
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~---~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAP---AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTT---CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCCCc---cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence             1243 78888766322100   013689999986431       23457888899999999999998654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.29  E-value=8.5e-12  Score=101.76  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=80.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhh-------CCC----CCEEEEEeCCc--------------hHHHHHHHHHHhcC-----
Q 026547           70 NAKKTIEIGVFTGYSLLLTALT-------IPE----DGQIMAIDVNR--------------ETYEIGLPVIKKAG-----  119 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~-------~~~----~~~v~~vD~~~--------------~~~~~a~~~~~~~~-----  119 (237)
                      ++.+|||||+|+|++++.+++.       .|.    ..+++++|..|              +..+.+++.++...     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999999887665       342    25899999887              44456777776521     


Q ss_pred             -----CC---CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc--C----cHHHHHHHHccCCCCeEEEE
Q 026547          120 -----VD---HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV--N----YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       120 -----~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--~----~~~~~~~~~~~L~~gG~lv~  179 (237)
                           +.   .+++++.||+.+.++.+...  ...+||+||+|+...  +    ..++|+.+.++|+|||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccc--cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 11   35789999999988765210  013799999997432  2    57899999999999999995

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.28  E-value=2.1e-11  Score=101.02  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=75.5

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .++...+.+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.+++++...+..++++++++|+.+
T Consensus        12 ~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~   88 (285)
T 1zq9_A           12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK   88 (285)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence            35555555555566667789999999999999999986   459999999999999999998777665689999999976


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVN  159 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~  159 (237)
                      ..         ..+||+|+.+.....
T Consensus        89 ~~---------~~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           89 TD---------LPFFDTCVANLPYQI  105 (285)
T ss_dssp             SC---------CCCCSEEEEECCGGG
T ss_pred             cc---------chhhcEEEEecCccc
Confidence            51         258999998765444

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.27  E-value=9.2e-12  Score=103.13  Aligned_cols=111  Identities=14%  Similarity=0.049  Sum_probs=75.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-----------------CCC-----------
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-----------------GVD-----------  121 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------------~~~-----------  121 (237)
                      ++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|+++++..                 +..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            6689999999999955444332 2 569999999999999999866432                 100           


Q ss_pred             -CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          122 -HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       122 -~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       ..++++.+|+.+.++- .......++||+|++...-       .+...+++++.++|+|||.+++...+
T Consensus       149 ~~~~~~~~~D~~~~~~~-~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPL-GAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             HHEEEEECCCTTSSSTT-CSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCc-cccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             0156777787653221 0000123569999987542       23567899999999999999997543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.27  E-value=1.7e-12  Score=104.49  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++++|||||||+|..+..+++. + ..+|+++|+++.+++.++++.      .++..... +........    .....|
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~------~~~~~~~~~~~~~~~~~~----~~~~~~  104 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSD------ERVVVMEQFNFRNAVLAD----FEQGRP  104 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTC------TTEEEECSCCGGGCCGGG----CCSCCC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhC------ccccccccceEEEeCHhH----cCcCCC
Confidence            4569999999999999999886 2 359999999999999877643      22332221 221111010    111236


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |.+.+|........+++.+.++|+|||.+++-
T Consensus       105 d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          105 SFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence            77767765556688999999999999998873

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.27  E-value=2.3e-11  Score=95.05  Aligned_cols=100  Identities=16%  Similarity=0.161  Sum_probs=71.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------------
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------------  135 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------  135 (237)
                      .++.+|||+|||+|..+.++++.++. +++|+++|+++..           . .++++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~-~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------P-IPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------C-CTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------C-CCCceEEEccccchhhhhhcccccccc
Confidence            45679999999999999999998763 5799999999842           1 245889999886642            


Q ss_pred             -------HHHhhcCCCCCceeEEEEeCCCcC-----c---------HHHHHHHHccCCCCeEEEEeC
Q 026547          136 -------DQLLKDSENEGSFDYAFVDADKVN-----Y---------WNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       136 -------~~~~~~~~~~~~~D~i~id~~~~~-----~---------~~~~~~~~~~L~~gG~lv~~~  181 (237)
                             ....+. ....+||+|+++.....     .         ...++.+.++|+|||.+++..
T Consensus        89 ~~~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           89 MNNNSVDYKLKEI-LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             ---CHHHHHHHHH-HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchhhHHHHHhh-cCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                   000000 01368999998764322     0         136777889999999999853

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.26  E-value=3.1e-11  Score=94.24  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=69.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--HHHhhc-C-C
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--DQLLKD-S-E  143 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~-~-~  143 (237)
                      ..++.+|||+|||+|.++..+++.   .++|+++|+++..           .. ++++++++|+.+..  ..+... + .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~   87 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREE   87 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhcc
Confidence            346789999999999999999886   6799999999852           12 46999999986531  111000 0 0


Q ss_pred             CCCceeEEEEeCCCcC--------------cHHHHHHHHccCCCCeEEEEeC
Q 026547          144 NEGSFDYAFVDADKVN--------------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..++||+|+.|.....              ....++.+.++|+|||.+++.-
T Consensus        88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            0148999999864211              1345677779999999999753

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.26  E-value=2.7e-11  Score=96.17  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=78.8

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +..+....++.+|||+|||+|..+..++..       +++|+++.+++.++++        +++++++|+.+..      
T Consensus        39 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~------   97 (219)
T 1vlm_A           39 LQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENLP------   97 (219)
T ss_dssp             HHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBCC------
T ss_pred             HHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccCC------
Confidence            334455556889999999999999888752       9999999999998885        4788999876541      


Q ss_pred             CCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          142 SENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       142 ~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                       ...++||+|++...   ..+...+++.+.+.|+|||.+++....
T Consensus        98 -~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           98 -LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             -SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence             12468999998754   234578999999999999999997654

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.25  E-value=8.8e-11  Score=99.91  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=105.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC---C----CCcEEEEeccchHHHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG---V----DHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~----~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      .++++||-||-|.|..+.+++++ + ..+|+.||+++..++.+++++....   .    .++++++.+|+.+++....++
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            35789999999999999999886 4 4699999999999999999874321   1    256999999999999876443


Q ss_pred             CCCCCceeEEEEeCCCc----C---------cHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHH
Q 026547          142 SENEGSFDYAFVDADKV----N---------YWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLD  208 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~----~---------~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  208 (237)
                         .++||+|++|....    .         ..++++.+.+.|+|||+++...-..    .            .......
T Consensus       282 ---~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~----~------------~~~~~~~  342 (381)
T 3c6k_A          282 ---GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCV----N------------LTEALSL  342 (381)
T ss_dssp             ---TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEET----T------------CHHHHHH
T ss_pred             ---cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCC----c------------chhHHHH
Confidence               47899999995310    0         2578899999999999999853211    0            0133455


Q ss_pred             HHHHhhcC-CCceE----Eeee---cCCceEEEEEcC
Q 026547          209 LNRSLADD-PRIQL----SHVP---LGDGITICWRIF  237 (237)
Q Consensus       209 ~~~~l~~~-~~~~~----~~lp---~~~Gl~i~~~~~  237 (237)
                      +.+.+..- +.+..    +.+|   -.+|+.++.|+.
T Consensus       343 i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~~  379 (381)
T 3c6k_A          343 YEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKKA  379 (381)
T ss_dssp             HHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEECC
T ss_pred             HHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECCC
Confidence            55555443 33322    2345   357999998863

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.24  E-value=1e-10  Score=96.20  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=97.4

Q ss_pred             ccCCCCCcHHHHHHHhhccCCCCCcHHHHHHHH-HHhhCCCCCccccHHHHHHHHH-HHhhcCCCEEEEEcccccH----
Q 026547           10 SSKGLLQSEELYRYILETSVYPREPEHLKEIRD-VTADHPRAMMSTAPDAGQLMAM-LLKLVNAKKTIEIGVFTGY----   83 (237)
Q Consensus        10 ~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~vLeiG~G~G~----   83 (237)
                      ....+..-+.+++++...    .+.+.+..+.+ .+......+  -++..-..+.. +....++.+|||+|||+|.    
T Consensus        49 ~~~~~~~~~~y~~~l~~~----~~~~e~~~l~~~lt~~~t~Ff--Rd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ys  122 (274)
T 1af7_A           49 RALGLDDFGRYLSMLEAN----QNSAEWQAFINALTTNLTAFF--REAHHFPILAEHARRRHGEYRVWSAAASTGEEPYS  122 (274)
T ss_dssp             HHHTCCCHHHHHHHHHHC----TTCTHHHHHHHHHCCCCCCTT--TTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHH
T ss_pred             HHcCCCCHHHHHHHHccC----CCHHHHHHHHHHHhhcCcccc--CChHHHHHHHHHccCCCCCcEEEEeeccCChhHHH
Confidence            344556666666777642    12233433333 222222222  13333333433 2222245699999999998    


Q ss_pred             HHHHHHhhCCC---CCEEEEEeCCchHHHHHHHHHH--------------h---------cC-------CCCcEEEEecc
Q 026547           84 SLLLTALTIPE---DGQIMAIDVNRETYEIGLPVIK--------------K---------AG-------VDHKINFIESE  130 (237)
Q Consensus        84 ~~~~la~~~~~---~~~v~~vD~~~~~~~~a~~~~~--------------~---------~~-------~~~~v~~~~~d  130 (237)
                      .++.+++.++.   +.+|+|+|+|+.+++.|++..-              +         .|       +..+|+|.++|
T Consensus       123 iAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~d  202 (274)
T 1af7_A          123 IAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVN  202 (274)
T ss_dssp             HHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECC
T ss_pred             HHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecc
Confidence            45556665442   3589999999999999998641              0         00       01368999999


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeC
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..+.  .+    ...++||+|++.....     .....++.+.+.|+|||++++..
T Consensus       203 l~~~--~~----~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          203 LLEK--QY----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             TTCS--SC----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             cCCC--CC----CcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence            8762  11    0136899999864322     12577888999999999999843

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.24  E-value=3e-12  Score=105.95  Aligned_cols=115  Identities=21%  Similarity=0.129  Sum_probs=79.3

Q ss_pred             ccHHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE-ec
Q 026547           54 TAPDAGQLMAMLLKL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI-ES  129 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~  129 (237)
                      +++...++...+...   .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+.+.      .+++... ..
T Consensus        66 vsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~  137 (291)
T 3hp7_A           66 VSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQY  137 (291)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSC
T ss_pred             ccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------Ccccceeccc
Confidence            344444544444433   24579999999999999998875 2 46999999999999875432      1344433 23


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++.......    .+..+||+|++|..-......+..+.++|+|||.+++-
T Consensus       138 ni~~l~~~~----l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          138 NFRYAEPVD----FTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CGGGCCGGG----CTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             Cceecchhh----CCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            443321110    11245999999987667788999999999999998774

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.23  E-value=1.5e-11  Score=104.60  Aligned_cols=105  Identities=13%  Similarity=0.063  Sum_probs=80.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +..+.  +++++..+..++++++.+|+.+.   +      . +
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~---~------p-~  247 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE---V------P-H  247 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC---C------C-C
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC---C------C-C
Confidence            34567999999999999999999987 789999999 44444  44344445667899999998632   1      3 8


Q ss_pred             eeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          148 FDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       148 ~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      ||+|++...-.+     ...+++++.+.|+|||.+++.+.....
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            999998754322     247899999999999999988776543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.23  E-value=6e-11  Score=100.80  Aligned_cols=117  Identities=17%  Similarity=0.151  Sum_probs=89.7

Q ss_pred             ccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547           54 TAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIPED----GQIMAIDVNRETYEIGLPVIKKAGVDHKIN  125 (237)
Q Consensus        54 ~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  125 (237)
                      .+.....++..++.    ..++.+|||+|||+|..+..+++.++..    .+++|+|+++.+++.|+.++...|+  +++
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~  187 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  187 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--Cce
Confidence            44556666555543    2345799999999999999998876532    7899999999999999999988887  488


Q ss_pred             EEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC---------------------cHHHHHHHHccCCCCeEEEEe
Q 026547          126 FIESEALSVLDQLLKDSENEGSFDYAFVDADKVN---------------------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       126 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~---------------------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++++|+.+..        ...+||+|+.+.+-..                     ...+++.+.+.|+|||.+++.
T Consensus       188 i~~~D~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          188 LLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             EEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEECCCCCcc--------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            9999987632        1478999998865111                     125789999999999988764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.22  E-value=1.6e-11  Score=106.81  Aligned_cols=101  Identities=15%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++.    +......++..+..+.++..      .++|
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~f  172 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPA  172 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCE
Confidence            35679999999999999999874   55999999999999988875    33222222222222222211      3899


Q ss_pred             eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|++...-   .+...+++.+.++|+|||++++...
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            999987643   3567899999999999999999754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.21  E-value=2.1e-11  Score=96.90  Aligned_cols=98  Identities=14%  Similarity=0.151  Sum_probs=77.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+..+++.   +.+++++|+++.+++.+++++        .+++.+|+.+....     ...++|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~-----~~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMP-----YEEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCC-----SCTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCC-----CCCCcc
Confidence            46789999999999999999886   379999999999999888753        36788887653111     124789


Q ss_pred             eEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|++....   .+...+++.+.+.|+|||.+++...
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~  131 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP  131 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred             CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999987542   3457889999999999999998654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.21  E-value=6.8e-11  Score=98.63  Aligned_cols=95  Identities=15%  Similarity=0.125  Sum_probs=72.2

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .++...+.+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++++..+. ++++++++|+.+
T Consensus        26 ~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~  101 (299)
T 2h1r_A           26 KNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIK  101 (299)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCS
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhh
Confidence            35555555656666677889999999999999999875   56999999999999999999987776 569999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcH
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYW  161 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~  161 (237)
                      ..         ..+||+|+++.......
T Consensus       102 ~~---------~~~~D~Vv~n~py~~~~  120 (299)
T 2h1r_A          102 TV---------FPKFDVCTANIPYKISS  120 (299)
T ss_dssp             SC---------CCCCSEEEEECCGGGHH
T ss_pred             CC---------cccCCEEEEcCCccccc
Confidence            51         36899999987644433

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.19  E-value=1.6e-10  Score=89.85  Aligned_cols=101  Identities=12%  Similarity=0.145  Sum_probs=72.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCC--------CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE-eccchHHHHH-
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPED--------GQIMAIDVNRETYEIGLPVIKKAGVDHKINFI-ESEALSVLDQ-  137 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~--------~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~~~-  137 (237)
                      ..++.+|||+|||+|..+..+++.++..        ++|+++|+++..           .. .+++++ .+|..+.... 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHH
Confidence            3467899999999999999999987632        799999999842           12 358888 8887553211 


Q ss_pred             -HhhcCCCCCceeEEEEeCCCcC-------c-------HHHHHHHHccCCCCeEEEEeC
Q 026547          138 -LLKDSENEGSFDYAFVDADKVN-------Y-------WNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       138 -~~~~~~~~~~~D~i~id~~~~~-------~-------~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       +... ...++||+|+++.....       .       ...++.+.++|+|||.+++..
T Consensus        88 ~~~~~-~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           88 RILEV-LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHH-SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHh-cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence             1000 11258999998753211       1       367888899999999999864

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.19  E-value=7.2e-10  Score=94.35  Aligned_cols=120  Identities=14%  Similarity=0.066  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-----CcEEEEeccch
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-----HKINFIESEAL  132 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~  132 (237)
                      ...+...+....++.+|||+++|.|.-|.+++..+. ++.|+++|+++..++..++++++.+..     .++.+...|+.
T Consensus       136 aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~  214 (359)
T 4fzv_A          136 ASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR  214 (359)
T ss_dssp             GGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence            344445556677788999999999999999998765 678999999999999999999988753     46889999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCc---------------------------HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNY---------------------------WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .+....      .+.||.|++|++.+..                           .+.++...++|+|||+||...+..
T Consensus       215 ~~~~~~------~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          215 KWGELE------GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             GHHHHS------TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hcchhc------cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            764432      4789999999764320                           246677779999999999998875

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.16  E-value=1.5e-10  Score=98.82  Aligned_cols=105  Identities=16%  Similarity=0.085  Sum_probs=83.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..+..+|||||||+|..+..+++..| +.+++..|. |++++.++++++..+ .++|+++.+|..+.         ....
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~---------~~~~  244 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD---------PLPE  244 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS---------CCCC
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC---------CCCC
Confidence            34567999999999999999999998 889999997 889999998876544 57899999998643         1356


Q ss_pred             eeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          148 FDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +|++++...-.+     ....++++.+.|+|||.+++.+...
T Consensus       245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~  286 (353)
T 4a6d_A          245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL  286 (353)
T ss_dssp             CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred             ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence            899988654333     2467899999999999888877654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.16  E-value=3.1e-11  Score=98.56  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=72.8

Q ss_pred             HHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-------hHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           60 QLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNR-------ETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        60 ~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .++...+...++.+|||+|||+|..++.++..   +++|+++|+++       ++++.|+++.+..++.++++++++|+.
T Consensus        73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~  149 (258)
T 2r6z_A           73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA  149 (258)
T ss_dssp             CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHH
T ss_pred             HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHH
Confidence            34444445556689999999999999999984   56999999999       999999998887777677999999999


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      +.++.+.+.   .++||+|++|.
T Consensus       150 ~~l~~~~~~---~~~fD~V~~dP  169 (258)
T 2r6z_A          150 EQMPALVKT---QGKPDIVYLDP  169 (258)
T ss_dssp             HHHHHHHHH---HCCCSEEEECC
T ss_pred             HHHHhhhcc---CCCccEEEECC
Confidence            987765321   16899999985

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.16  E-value=2.3e-10  Score=92.40  Aligned_cols=102  Identities=8%  Similarity=-0.080  Sum_probs=81.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ..+.+|||||||+|-+++.++...+ ..+|+++|+++.+++.+++++..+|+.  .++.+.|.....        ..++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~--------p~~~~  199 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR--------LDEPA  199 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC--------CCSCC
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC--------CCCCc
Confidence            5588999999999999998887655 889999999999999999999999874  677888765432        25899


Q ss_pred             eEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |++++.-..+..     ...| ++...|+++|++|--+.
T Consensus       200 DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~  237 (281)
T 3lcv_B          200 DVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT  237 (281)
T ss_dssp             SEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred             chHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence            999876432221     2344 67789999999987666

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.15  E-value=5e-10  Score=93.03  Aligned_cols=102  Identities=15%  Similarity=0.073  Sum_probs=77.6

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +++...+.+...+...++.+|||||||+|..+..+++.   ..+|+++|+++.+++.++++++..   ++++++++|+.+
T Consensus        34 ~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~  107 (295)
T 3gru_A           34 IDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALK  107 (295)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTT
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhh
Confidence            45666666666666777889999999999999999986   469999999999999999998732   469999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      ...       ...+||.|+.+.......+.+..+.
T Consensus       108 ~~~-------~~~~fD~Iv~NlPy~is~pil~~lL  135 (295)
T 3gru_A          108 VDL-------NKLDFNKVVANLPYQISSPITFKLI  135 (295)
T ss_dssp             SCG-------GGSCCSEEEEECCGGGHHHHHHHHH
T ss_pred             CCc-------ccCCccEEEEeCcccccHHHHHHHH
Confidence            521       1257999998865444344433333

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.15  E-value=9.1e-11  Score=101.37  Aligned_cols=119  Identities=12%  Similarity=0.049  Sum_probs=87.2

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------------C
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------------D   95 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-------------------------------------~   95 (237)
                      ++....+..|..++...++..|||.+||+|..++..+.....                                     .
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~  263 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP  263 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence            345566666666666667789999999999998877654321                                     1


Q ss_pred             CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-------cCcHHHHHHHH
Q 026547           96 GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-------VNYWNYHERLM  168 (237)
Q Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~  168 (237)
                      .+|+++|+++.+++.|+++++.+|+.++++++++|+.+...        ..+||+|+++.+-       .....+++.+.
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg  335 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPYGERLEDEEAVRQLYREMG  335 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCCccccCCchhHHHHHHHHH
Confidence            56999999999999999999999998889999999987532        3689999998653       12234455444


Q ss_pred             ccCCC--CeEEEE
Q 026547          169 KLLKV--GGIAVY  179 (237)
Q Consensus       169 ~~L~~--gG~lv~  179 (237)
                      +.|++  ||.+.+
T Consensus       336 ~~lk~~~g~~~~i  348 (393)
T 3k0b_A          336 IVYKRMPTWSVYV  348 (393)
T ss_dssp             HHHHTCTTCEEEE
T ss_pred             HHHhcCCCCEEEE
Confidence            44443  665443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.14  E-value=2.1e-10  Score=95.54  Aligned_cols=87  Identities=17%  Similarity=0.105  Sum_probs=71.2

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..+++.++ +++|+++|.++.+++.|+++++..+  ++++++++|+.+....+...  ...
T Consensus        23 ~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~--g~~   97 (301)
T 1m6y_A           23 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIE   97 (301)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhc--CCC
Confidence            445678999999999999999999887 7899999999999999999998877  57999999987653323211  125


Q ss_pred             ceeEEEEeCCCc
Q 026547          147 SFDYAFVDADKV  158 (237)
Q Consensus       147 ~~D~i~id~~~~  158 (237)
                      +||.|++|.+.+
T Consensus        98 ~~D~Vl~D~gvS  109 (301)
T 1m6y_A           98 KVDGILMDLGVS  109 (301)
T ss_dssp             CEEEEEEECSCC
T ss_pred             CCCEEEEcCccc
Confidence            899999997654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.14  E-value=9.3e-11  Score=92.64  Aligned_cols=97  Identities=13%  Similarity=0.092  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+....++.+|||+|||+|..+..++      .+|+++|+++.                +++++++|+.+. + 
T Consensus        55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~-  110 (215)
T 2zfu_A           55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P-  110 (215)
T ss_dssp             HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S-
T ss_pred             HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C-
Confidence            34455566555677899999999999887763      48999999987                356788887663 1 


Q ss_pred             HhhcCCCCCceeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                           ...++||+|++...  ..+...+++.+.++|+|||.+++.+..
T Consensus       111 -----~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          111 -----LEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             -----CCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             -----CCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence                 12478999998654  345678999999999999999987543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.12  E-value=2e-10  Score=98.91  Aligned_cols=118  Identities=8%  Similarity=-0.006  Sum_probs=88.2

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------------CC
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------------DG   96 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-------------------------------------~~   96 (237)
                      +....+..|..++...++..+||.+||+|..++..+.....                                     ..
T Consensus       178 l~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  257 (384)
T 3ldg_A          178 IKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL  257 (384)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence            44566666666666677789999999999998877654321                                     15


Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-------cCcHHHHHHHHc
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-------VNYWNYHERLMK  169 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~  169 (237)
                      +|+|+|+++.+++.|+++++.+|+.++++++++|+.+...        ..+||+|++|.+-       .....+++.+.+
T Consensus       258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~  329 (384)
T 3ldg_A          258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPYGERLLDDKAVDILYNEMGE  329 (384)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCchhhccCCHHHHHHHHHHHHH
Confidence            6999999999999999999999998889999999987632        3689999998542       223455555555


Q ss_pred             cCCC--CeEEEE
Q 026547          170 LLKV--GGIAVY  179 (237)
Q Consensus       170 ~L~~--gG~lv~  179 (237)
                      .|++  ||.+.+
T Consensus       330 ~lk~~~g~~~~i  341 (384)
T 3ldg_A          330 TFAPLKTWSQFI  341 (384)
T ss_dssp             HHTTCTTSEEEE
T ss_pred             HHhhCCCcEEEE
Confidence            5554  665443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.12  E-value=3.3e-10  Score=99.50  Aligned_cols=119  Identities=16%  Similarity=0.109  Sum_probs=92.1

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC------------CCCEEEEEeCCchHHHHHHHHHHhcCC
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP------------EDGQIMAIDVNRETYEIGLPVIKKAGV  120 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~  120 (237)
                      ..++...++|..++...++.+|||.|||+|..++.+++.+.            ...+++|+|+++.+++.|+.++...|+
T Consensus       154 yTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~  233 (445)
T 2okc_A          154 FTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI  233 (445)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             cCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            35567777777777766677999999999999988877541            135799999999999999999988887


Q ss_pred             CC-cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--------------------cHHHHHHHHccCCCCeEEEE
Q 026547          121 DH-KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--------------------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       121 ~~-~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--------------------~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .. .++++++|++....        ..+||+|+.+.+-..                    ...+++.+.+.|+|||.+++
T Consensus       234 ~~~~~~i~~gD~l~~~~--------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          234 GTDRSPIVCEDSLEKEP--------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             CSSCCSEEECCTTTSCC--------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcCCCCEeeCCCCCCcc--------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence            53 57889999876421        358999998743111                    13789999999999998765

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.11  E-value=9.3e-11  Score=101.99  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=82.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ..+...+.+..++...++.+|||+|||+|..++.+++..+...+++|+|+++.+++.|          .+++++++|+.+
T Consensus        23 TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~   92 (421)
T 2ih2_A           23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLL   92 (421)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhh
Confidence            4566666666666544567999999999999999998763367999999999998766          368999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCC--------------c------------------CcHHHHHHHHccCCCCeEEEEe
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADK--------------V------------------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~--------------~------------------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+        .++||+|+.+.+-              .                  .+..+++.+.++|++||.+++-
T Consensus        93 ~~~--------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i  163 (421)
T 2ih2_A           93 WEP--------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV  163 (421)
T ss_dssp             CCC--------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCc--------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence            521        3689999986321              0                  0125688888999999987763

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.11  E-value=7.7e-11  Score=101.06  Aligned_cols=98  Identities=9%  Similarity=0.074  Sum_probs=77.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++       .++++++.+|..+.+         ... |
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~~~---------p~~-D  263 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFDGV---------PKG-D  263 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC---------CCC-S
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCCCC---------CCC-C
Confidence            457999999999999999999987 789999999 888776654       257999999987632         123 9


Q ss_pred             EEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          150 YAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       150 ~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      +|++.....+     ...+++++.+.|+|||.+++.+.....
T Consensus       264 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          264 AIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP  305 (368)
T ss_dssp             EEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9988754432     246799999999999999988776543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.11  E-value=1.1e-10  Score=100.76  Aligned_cols=116  Identities=16%  Similarity=0.112  Sum_probs=85.0

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC-------------------------------------CCCE
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP-------------------------------------EDGQ   97 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~-------------------------------------~~~~   97 (237)
                      ....+..|..++...++..|||.|||+|..++.++....                                     ...+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            444555555555556678999999999999988776532                                     1257


Q ss_pred             EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-------CcHHHHHHHHcc
Q 026547           98 IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-------NYWNYHERLMKL  170 (237)
Q Consensus        98 v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-------~~~~~~~~~~~~  170 (237)
                      |+|+|+++.+++.|+++++.+|+.+.+++.++|+.+...        ..+||+|+++.+-.       ....+++.+.+.
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~  331 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYA  331 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999998789999999988632        36899999986532       223455555444


Q ss_pred             CCC--CeEEE
Q 026547          171 LKV--GGIAV  178 (237)
Q Consensus       171 L~~--gG~lv  178 (237)
                      |++  |+.+.
T Consensus       332 lk~~~g~~~~  341 (385)
T 3ldu_A          332 FRKLKNWSYY  341 (385)
T ss_dssp             HHTSBSCEEE
T ss_pred             HhhCCCCEEE
Confidence            444  55443

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.11  E-value=1.3e-10  Score=99.54  Aligned_cols=98  Identities=9%  Similarity=0.044  Sum_probs=77.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++       .++++++.+|..+.+         ... 
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~---------p~~-  260 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFKEV---------PSG-  260 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTTCC---------CCC-
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCCCC---------CCC-
Confidence            3467999999999999999999987 789999999 888776654       257999999987621         123 


Q ss_pred             eEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          149 DYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       149 D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      |+|++...-.+     ...+++++.+.|+|||.+++.+....
T Consensus       261 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          261 DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            99998754432     34689999999999999988877653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.10  E-value=6.4e-11  Score=101.67  Aligned_cols=97  Identities=15%  Similarity=0.170  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++.       ++++++.+|..+.   +       ..|
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-------~~~  268 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFAS---V-------PQG  268 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C-------CCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccC---C-------CCC
Confidence            3567999999999999999999987 789999999 8888776641       3599999998662   1       239


Q ss_pred             eEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          149 DYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |+|++...-.++     ..+++++.+.|+|||.+++.+...
T Consensus       269 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  309 (372)
T 1fp1_D          269 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  309 (372)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            999987543322     278999999999999999887654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.08  E-value=3.3e-09  Score=84.86  Aligned_cols=107  Identities=13%  Similarity=0.084  Sum_probs=79.8

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhh
Q 026547           61 LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLK  140 (237)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  140 (237)
                      +...+.....+.+|||||||.|-.++.+.   + ..+++++|+++.+++.+++++...|.  ...+.++|.....     
T Consensus        96 fY~~i~~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~-----  164 (253)
T 3frh_A           96 LYDFIFSAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAP-----  164 (253)
T ss_dssp             HHHHHTSSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSC-----
T ss_pred             HHHHHhcCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCC-----
Confidence            33333444568899999999999988776   3 78999999999999999999988774  5788888876542     


Q ss_pred             cCCCCCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                         ..++||+|++.-..+.     -...+ ++...|+++|++|--.+
T Consensus       165 ---~~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPt  207 (253)
T 3frh_A          165 ---PAEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPT  207 (253)
T ss_dssp             ---CCCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEEC
T ss_pred             ---CCCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcCh
Confidence               2579999987632111     12333 66678999998887653

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.07  E-value=3e-10  Score=98.16  Aligned_cols=76  Identities=18%  Similarity=0.152  Sum_probs=66.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      +.+|||+|||+|..++++++.   +.+|+++|+++.+++.|+++++..  |+ ++++++++|+.++++...     ..+|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCCc
Confidence            789999999999999999875   569999999999999999999988  87 679999999998766431     2589


Q ss_pred             eEEEEeC
Q 026547          149 DYAFVDA  155 (237)
Q Consensus       149 D~i~id~  155 (237)
                      |+||+|.
T Consensus       165 DvV~lDP  171 (410)
T 3ll7_A          165 DYIYVDP  171 (410)
T ss_dssp             SEEEECC
T ss_pred             eEEEECC
Confidence            9999984

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.06  E-value=2.4e-10  Score=97.31  Aligned_cols=98  Identities=10%  Similarity=0.092  Sum_probs=78.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++.       ++++++.+|..+.   +       ..
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-------p~  246 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTS---I-------PN  246 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTC---C-------CC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCC---C-------CC
Confidence            34668999999999999999999887 789999999 9888877651       3499999998652   1       34


Q ss_pred             eeEEEEeCCCcC---cH--HHHHHHHccCCC---CeEEEEeCcCC
Q 026547          148 FDYAFVDADKVN---YW--NYHERLMKLLKV---GGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~~---~~--~~~~~~~~~L~~---gG~lv~~~~~~  184 (237)
                      ||+|++...-.+   ..  .+++++.+.|+|   ||.+++.+...
T Consensus       247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence            999998754332   23  789999999999   99998877654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.05  E-value=9.7e-10  Score=89.51  Aligned_cols=92  Identities=10%  Similarity=0.100  Sum_probs=70.9

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .++...+.+...+...++.+|||||||+|..|..+++.   ..+|+++|+++.+++.+++++..   .++++++++|+.+
T Consensus        13 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~   86 (255)
T 3tqs_A           13 HDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQ   86 (255)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTT
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHh
Confidence            45666666666677778889999999999999999985   46999999999999999998865   3579999999988


Q ss_pred             H-HHHHhhcCCCCCceeEEEEeCC
Q 026547          134 V-LDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       134 ~-~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      . ++.+.    ..++|| |+.+.+
T Consensus        87 ~~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           87 FDFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             CCGGGSC----CSSCEE-EEEECC
T ss_pred             CCHHHhc----cCCCeE-EEecCC
Confidence            6 22220    125788 555544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.02  E-value=8.7e-10  Score=99.70  Aligned_cols=102  Identities=22%  Similarity=0.209  Sum_probs=76.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||.|..+..||+.   +++|+|||+++.+++.|+....+.|.. ++++.++++.+.....     ..++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~  134 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGE  134 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTS
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCC
Confidence            346789999999999999999985   779999999999999999999887743 5999999998876543     2478


Q ss_pred             eeEEEEeCCCcCcH-----HHHHHHHccCCCCeEEE
Q 026547          148 FDYAFVDADKVNYW-----NYHERLMKLLKVGGIAV  178 (237)
Q Consensus       148 ~D~i~id~~~~~~~-----~~~~~~~~~L~~gG~lv  178 (237)
                      ||+|++-..-++..     .....+.+.|+++|...
T Consensus       135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~  170 (569)
T 4azs_A          135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAV  170 (569)
T ss_dssp             CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred             ccEEEECcchhcCCCHHHHHHHHHHHHHhcccccee
Confidence            99999875443322     11223344556655433

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.00  E-value=1.6e-10  Score=94.71  Aligned_cols=99  Identities=13%  Similarity=0.017  Sum_probs=68.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH-HhcCCCCcEEEE--eccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI-KKAGVDHKINFI--ESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~  145 (237)
                      .++.+|||+|||+|.++.++++.    ++|++||+++ ++..+++.. .......++.++  ++|+.++         ..
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~  138 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL---------PV  138 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS---------CC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC---------CC
Confidence            35679999999999999999875    5899999998 432222110 000011158888  8898764         13


Q ss_pred             CceeEEEEeCCCc--Cc-------HHHHHHHHccCCCCe--EEEEeC
Q 026547          146 GSFDYAFVDADKV--NY-------WNYHERLMKLLKVGG--IAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~--~~-------~~~~~~~~~~L~~gG--~lv~~~  181 (237)
                      ++||+|++|....  +.       ...++.+.++|+|||  .+++..
T Consensus       139 ~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          139 ERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            7899999986411  11       136788889999999  998854

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.99  E-value=9.5e-11  Score=96.61  Aligned_cols=99  Identities=7%  Similarity=-0.025  Sum_probs=69.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH-HhcCCCCcEEEE--eccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI-KKAGVDHKINFI--ESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~~~~~~  145 (237)
                      .++.+|||+|||+|.++..+++.    ++|++||+++ ++..+++.. .......++.++  ++|+.++ +        .
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l-~--------~  146 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM-E--------P  146 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC-C--------C
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC-C--------C
Confidence            35679999999999999999875    5899999998 533322210 000111168899  8898763 1        3


Q ss_pred             CceeEEEEeCCCc--Cc-------HHHHHHHHccCCCCe--EEEEeC
Q 026547          146 GSFDYAFVDADKV--NY-------WNYHERLMKLLKVGG--IAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~--~~-------~~~~~~~~~~L~~gG--~lv~~~  181 (237)
                      ++||+|+++....  +.       ...++.+.+.|+|||  .+++..
T Consensus       147 ~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          147 FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            7899999986511  11       136788889999999  888853

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.98  E-value=3.5e-09  Score=86.88  Aligned_cols=113  Identities=9%  Similarity=-0.060  Sum_probs=81.1

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .++...+.+...+...++ +|||||||+|..|..+++.   +.+|+++|+++.+++.+++++..    .+++++++|+.+
T Consensus        31 ~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~  102 (271)
T 3fut_A           31 VSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALL  102 (271)
T ss_dssp             CCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhh
Confidence            456666666666667777 9999999999999999986   46899999999999999998752    479999999987


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc-CCCCeEEEEe
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKL-LKVGGIAVYD  180 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~-L~~gG~lv~~  180 (237)
                      ....-      ...+|.|+.+.+.....+.+..+... .-..+++++.
T Consensus       103 ~~~~~------~~~~~~iv~NlPy~iss~il~~ll~~~~~~~~~lm~Q  144 (271)
T 3fut_A          103 YPWEE------VPQGSLLVANLPYHIATPLVTRLLKTGRFARLVFLVQ  144 (271)
T ss_dssp             SCGGG------SCTTEEEEEEECSSCCHHHHHHHHHHCCEEEEEEEEE
T ss_pred             CChhh------ccCccEEEecCcccccHHHHHHHhcCCCCCEEEEEee
Confidence            52110      13688888876655555555544433 1134555553

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.96  E-value=3.4e-10  Score=92.24  Aligned_cols=86  Identities=9%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             HHHHHhhcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--------CCCcEEEEeccc
Q 026547           62 MAMLLKLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--------VDHKINFIESEA  131 (237)
Q Consensus        62 l~~l~~~~~~--~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------~~~~v~~~~~d~  131 (237)
                      +...+...++  .+|||+|||+|..+++++..   +++|+++|.++.+++.++++++...        +.++++++++|+
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            3344445556  79999999999999999986   4589999999998888877776442        224799999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCC
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      .++++.+      .++||+|++|..
T Consensus       155 ~~~L~~~------~~~fDvV~lDP~  173 (258)
T 2oyr_A          155 LTALTDI------TPRPQVVYLDPM  173 (258)
T ss_dssp             HHHSTTC------SSCCSEEEECCC
T ss_pred             HHHHHhC------cccCCEEEEcCC
Confidence            9887654      357999999964

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.94  E-value=7.7e-10  Score=92.44  Aligned_cols=96  Identities=9%  Similarity=0.000  Sum_probs=67.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC----CchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDV----NRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSE  143 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~  143 (237)
                      .++.+|||+|||+|..+..+++.    ++|+++|+    ++..++..+  .+..+ .+++.++++ |+.+..        
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--------  145 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--------  145 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--------
Confidence            34579999999999999999975    48999999    453332111  11111 146899998 876541        


Q ss_pred             CCCceeEEEEeCCCc--Cc-------HHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKV--NY-------WNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~--~~-------~~~~~~~~~~L~~gG~lv~~  180 (237)
                       .++||+|++|....  ..       ...++.+.++|+|||.+++.
T Consensus       146 -~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          146 -PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             -CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             -cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence             37899999986532  11       13577778999999999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.94  E-value=1.5e-09  Score=92.59  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=77.5

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      . .+++++.+|..+.   +       .+
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~~---~-------~~  251 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFKS---I-------PS  251 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTTC---C-------CC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCCC---C-------CC
Confidence            34668999999999999999999987 789999999 788776654      1 3499999998652   1       35


Q ss_pred             eeEEEEeCCCcC-----cHHHHHHHHccCCC---CeEEEEeCcCC
Q 026547          148 FDYAFVDADKVN-----YWNYHERLMKLLKV---GGIAVYDNTLW  184 (237)
Q Consensus       148 ~D~i~id~~~~~-----~~~~~~~~~~~L~~---gG~lv~~~~~~  184 (237)
                      ||+|++...-.+     ...+++++.+.|+|   ||.+++.+...
T Consensus       252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            999998754322     23789999999999   99888876654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.93  E-value=3.7e-09  Score=94.93  Aligned_cols=120  Identities=11%  Similarity=0.008  Sum_probs=91.4

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCchHHHHHHHHHH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQIMAIDVNRETYEIGLPVIK  116 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-----------------~~~v~~vD~~~~~~~~a~~~~~  116 (237)
                      .++...++|..++...++.+|+|.+||+|...+.+++.+..                 ...++|+|+++.+++.|+.++.
T Consensus       153 TP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~  232 (541)
T 2ar0_A          153 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL  232 (541)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence            45667777777776666779999999999998887765421                 2379999999999999999998


Q ss_pred             hcCCCC----cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC-----------------cHHHHHHHHccCCCCe
Q 026547          117 KAGVDH----KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN-----------------YWNYHERLMKLLKVGG  175 (237)
Q Consensus       117 ~~~~~~----~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~-----------------~~~~~~~~~~~L~~gG  175 (237)
                      ..|...    +++++++|++......      ..+||+|+.+.+-..                 ...+++.+.+.|+|||
T Consensus       233 l~gi~~~~~~~~~I~~gDtL~~~~~~------~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gG  306 (541)
T 2ar0_A          233 LHDIEGNLDHGGAIRLGNTLGSDGEN------LPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGG  306 (541)
T ss_dssp             TTTCCCBGGGTBSEEESCTTSHHHHT------SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEE
T ss_pred             HhCCCccccccCCeEeCCCccccccc------ccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCC
Confidence            877754    2788999987653221      378999998753111                 2368899999999999


Q ss_pred             EEEE
Q 026547          176 IAVY  179 (237)
Q Consensus       176 ~lv~  179 (237)
                      .+++
T Consensus       307 r~a~  310 (541)
T 2ar0_A          307 RAAV  310 (541)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.93  E-value=1e-08  Score=82.91  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .++...+.+...+...++.+|||||||+|..+..++...   .+|+++|+++.+++.+++++...   ++++++++|+.+
T Consensus        14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~   87 (244)
T 1qam_A           14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQ   87 (244)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGG
T ss_pred             CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHh
Confidence            344444444444455567899999999999999999863   69999999999999999987532   479999999977


Q ss_pred             H
Q 026547          134 V  134 (237)
Q Consensus       134 ~  134 (237)
                      .
T Consensus        88 ~   88 (244)
T 1qam_A           88 F   88 (244)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.91  E-value=3.3e-09  Score=87.82  Aligned_cols=90  Identities=13%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             hcCCCEEEEEcccc------cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE-EeccchHHHHHHhh
Q 026547           68 LVNAKKTIEIGVFT------GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF-IESEALSVLDQLLK  140 (237)
Q Consensus        68 ~~~~~~vLeiG~G~------G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~  140 (237)
                      ..++.+|||+|||+      |.  ..+++.++.+++|+++|+++.        +      +++++ +++|+.+..     
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v------~~v~~~i~gD~~~~~-----  119 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V------SDADSTLIGDCATVH-----  119 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B------CSSSEEEESCGGGCC-----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C------CCCEEEEECccccCC-----
Confidence            45667999999955      65  556666665789999999998        1      25788 999987641     


Q ss_pred             cCCCCCceeEEEEeCCCcC--------------cHHHHHHHHccCCCCeEEEEeC
Q 026547          141 DSENEGSFDYAFVDADKVN--------------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         ..++||+|+.+.....              +...++.+.+.|+|||.+++..
T Consensus       120 ---~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          120 ---TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ---CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence               1368999998743211              2467888999999999999864

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.88  E-value=8.4e-09  Score=93.52  Aligned_cols=102  Identities=11%  Similarity=0.068  Sum_probs=78.0

Q ss_pred             CCEEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTA---LTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la---~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ...|||+|||+|-+....+   +......+|++||.++ ++..+++..+..++.++|+++++|+.++-  +      .++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--L------PEK  428 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--A------PEK  428 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--C------SSC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--C------Ccc
Confidence            3579999999999844433   3333234799999997 67789999999999999999999998862  2      489


Q ss_pred             eeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .|+|+.-.     ..+..++.+....+.|+|||+++=+.
T Consensus       429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiPs~  467 (637)
T 4gqb_A          429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGE  467 (637)
T ss_dssp             EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEESCE
T ss_pred             cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcccc
Confidence            99997531     23345677777789999999977543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.87  E-value=1.2e-08  Score=84.00  Aligned_cols=82  Identities=10%  Similarity=0.120  Sum_probs=64.3

Q ss_pred             CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547           47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAGVDHKIN  125 (237)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  125 (237)
                      .+..+. .++...+.+...+...++.+|||||||+|..+..+++..+. +++|+++|+++.+++.++++.     .++++
T Consensus        20 ~GQ~fL-~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~   93 (279)
T 3uzu_A           20 FGQNFL-VDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLE   93 (279)
T ss_dssp             CSCCEE-CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEE
T ss_pred             CCcccc-CCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcE
Confidence            344433 45666666666666777889999999999999999987552 245999999999999999983     24799


Q ss_pred             EEeccchHH
Q 026547          126 FIESEALSV  134 (237)
Q Consensus       126 ~~~~d~~~~  134 (237)
                      ++++|+.+.
T Consensus        94 ~i~~D~~~~  102 (279)
T 3uzu_A           94 LHAGDALTF  102 (279)
T ss_dssp             EEESCGGGC
T ss_pred             EEECChhcC
Confidence            999999875

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.82  E-value=1.5e-10  Score=93.69  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=77.8

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ++...+.+...+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.++++++   ..++++++++|+.+.
T Consensus        14 ~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~   87 (245)
T 1yub_A           14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF   87 (245)
T ss_dssp             CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhc
Confidence            3444444444445556779999999999999999986   3699999999999998888764   235799999999775


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcC--------------cHHHH----HHHHccCCCCeEEEE
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVN--------------YWNYH----ERLMKLLKVGGIAVY  179 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~--------------~~~~~----~~~~~~L~~gG~lv~  179 (237)
                      .  +.    ..++| .|+.+.+-..              ...++    +.+.++|+|||.+++
T Consensus        88 ~--~~----~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           88 Q--FP----NKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             T--CC----CSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             C--cc----cCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            2  10    02578 5666543211              11223    557788999997655

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.81  E-value=2.1e-08  Score=81.26  Aligned_cols=119  Identities=14%  Similarity=0.094  Sum_probs=80.2

Q ss_pred             CCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEE
Q 026547           47 HPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINF  126 (237)
Q Consensus        47 ~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~  126 (237)
                      .+..+. .++...+.+...+...++.+|||||||+|..+..+++. + ..+|+++|+++.+++.++++    + ..++++
T Consensus         9 ~GQnfl-~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~   80 (249)
T 3ftd_A            9 FGQHLL-VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEV   80 (249)
T ss_dssp             CCSSCE-ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEE
T ss_pred             cccccc-CCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEE
Confidence            344433 44555555555566667889999999999999999875 2 47999999999999999876    2 346999


Q ss_pred             EeccchHHH-HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHcc--CCCCeEEEEe
Q 026547          127 IESEALSVL-DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKL--LKVGGIAVYD  180 (237)
Q Consensus       127 ~~~d~~~~~-~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~--L~~gG~lv~~  180 (237)
                      +++|+.+.. +.+      .+.+ .|+.+.+.....+.+..+...  .-+.+++++.
T Consensus        81 i~~D~~~~~~~~~------~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q  130 (249)
T 3ftd_A           81 INEDASKFPFCSL------GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ  130 (249)
T ss_dssp             ECSCTTTCCGGGS------CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             EEcchhhCChhHc------cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence            999998752 211      1234 566666554445555555432  2345566654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.79  E-value=8.9e-09  Score=95.14  Aligned_cols=121  Identities=12%  Similarity=0.070  Sum_probs=87.1

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---C-------------------------------------
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTI---P-------------------------------------   93 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~-------------------------------------   93 (237)
                      +....+..|..++...++..|||.+||+|..++..+...   +                                     
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            455666666666666677899999999999988776542   1                                     


Q ss_pred             -CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-------CcHHHHH
Q 026547           94 -EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-------NYWNYHE  165 (237)
Q Consensus        94 -~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-------~~~~~~~  165 (237)
                       ...+|+|+|+++.+++.|+.++..+|+.+.+++.++|+.+..+..     ..++||+|+++.+-.       ....+++
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~  328 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLSNPPYGERLDSEPALIALHS  328 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEECCCCCC---CCHHHHHHHH
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEeCCCccccccchhHHHHHHH
Confidence             125899999999999999999999999888999999998753211     123899999985421       2234444


Q ss_pred             HHH---ccCCCCeEEEE
Q 026547          166 RLM---KLLKVGGIAVY  179 (237)
Q Consensus       166 ~~~---~~L~~gG~lv~  179 (237)
                      .+.   +.+.|||.+.+
T Consensus       329 ~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          329 LLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHhhCCCCeEEE
Confidence            443   44557886554

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.78  E-value=3.7e-08  Score=79.96  Aligned_cols=104  Identities=12%  Similarity=-0.020  Sum_probs=69.7

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ++...+.+...+...++.+|||||||+|..|. +++ .+ ..+|+++|+++.+++.+++++...   ++++++++|+.+.
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~   79 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhC
Confidence            45555555555666677899999999999999 654 22 234999999999999999876432   4799999999884


Q ss_pred             -HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHH
Q 026547          135 -LDQLLKDSENEGSFDYAFVDADKVNYWNYHERL  167 (237)
Q Consensus       135 -~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~  167 (237)
                       ++...+.   .+..|.|+.+.+.......+..+
T Consensus        80 ~~~~~~~~---~~~~~~vvsNlPY~i~~~il~~l  110 (252)
T 1qyr_A           80 NFGELAEK---MGQPLRVFGNLPYNISTPLMFHL  110 (252)
T ss_dssp             CHHHHHHH---HTSCEEEEEECCTTTHHHHHHHH
T ss_pred             CHHHhhcc---cCCceEEEECCCCCccHHHHHHH
Confidence             3332110   02356777666544434444333

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.76  E-value=2.1e-08  Score=91.13  Aligned_cols=109  Identities=11%  Similarity=-0.048  Sum_probs=76.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhC---C---------CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           71 AKKTIEIGVFTGYSLLLTALTI---P---------EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~---~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      .+.|||+|||+|-++...+++.   .         ...+|++||.++......+... ..|+.++|+++++|+.++-...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMN-VRTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHH-HHTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHH-hcCCCCeEEEEeCchhhccccc
Confidence            4589999999999875433222   1         1349999999997775555544 4788899999999998874311


Q ss_pred             hhcCCCCCceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          139 LKDSENEGSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..  ...++.|+|+.-.     ..+..++.+..+.+.|+|||+++=+..
T Consensus       489 ~~--~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP~~~  535 (745)
T 3ua3_A          489 KD--RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKY  535 (745)
T ss_dssp             HH--TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEESCEE
T ss_pred             cc--CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEECCcc
Confidence            11  1247999998642     223456788888899999998775433

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.72  E-value=2.5e-07  Score=82.96  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=94.6

Q ss_pred             CCccccHHHHHHHHHHHh----hcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHhcCCC-C
Q 026547           50 AMMSTAPDAGQLMAMLLK----LVNAKKTIEIGVFTGYSLLLTALTIP--EDGQIMAIDVNRETYEIGLPVIKKAGVD-H  122 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~----~~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~  122 (237)
                      +...+++...++|..++.    ..++.+|+|.+||+|...+.+++.+.  ....++|+|+++.++..|+.++...|+. +
T Consensus       197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~  276 (542)
T 3lkd_A          197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIE  276 (542)
T ss_dssp             SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGG
T ss_pred             CeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcC
Confidence            434467888888888887    34567999999999999888887763  2568999999999999999999888875 4


Q ss_pred             cEEEEeccchHHH-HHHhhcCCCCCceeEEEEeCCC------c-------C-------------cHHHHHHHHccCC-CC
Q 026547          123 KINFIESEALSVL-DQLLKDSENEGSFDYAFVDADK------V-------N-------------YWNYHERLMKLLK-VG  174 (237)
Q Consensus       123 ~v~~~~~d~~~~~-~~~~~~~~~~~~~D~i~id~~~------~-------~-------------~~~~~~~~~~~L~-~g  174 (237)
                      ++++.++|.+... +.     ....+||+|+.+.+-      .       .             ...+++.+.+.|+ +|
T Consensus       277 ~~~I~~gDtL~~d~p~-----~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~g  351 (542)
T 3lkd_A          277 NQFLHNADTLDEDWPT-----QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDN  351 (542)
T ss_dssp             GEEEEESCTTTSCSCC-----SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTT
T ss_pred             ccceEecceecccccc-----cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCc
Confidence            6899999987541 11     114789999976321      0       0             1247888999999 99


Q ss_pred             eEEEE
Q 026547          175 GIAVY  179 (237)
Q Consensus       175 G~lv~  179 (237)
                      |.+++
T Consensus       352 Gr~a~  356 (542)
T 3lkd_A          352 GVMAI  356 (542)
T ss_dssp             CEEEE
T ss_pred             eeEEE
Confidence            98754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.68  E-value=2.7e-08  Score=89.25  Aligned_cols=123  Identities=10%  Similarity=0.102  Sum_probs=90.6

Q ss_pred             CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC--------------CCEEEEEeCCchHHHHHHHHH
Q 026547           50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE--------------DGQIMAIDVNRETYEIGLPVI  115 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~--------------~~~v~~vD~~~~~~~~a~~~~  115 (237)
                      +...+++...++|..++...++ +|+|.+||+|...+.+++.+..              ...++|+|+++.+++.|+.++
T Consensus       225 G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl  303 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNM  303 (544)
T ss_dssp             TTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHH
Confidence            4444678888888888765443 9999999999988776544320              358999999999999999999


Q ss_pred             HhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--------------------------------cHHH
Q 026547          116 KKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--------------------------------YWNY  163 (237)
Q Consensus       116 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--------------------------------~~~~  163 (237)
                      ...|+..++.+.++|++....      ....+||+|+.+.+-..                                ...+
T Consensus       304 ~l~gi~~~i~i~~gDtL~~~~------~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~F  377 (544)
T 3khk_A          304 VIRGIDFNFGKKNADSFLDDQ------HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAW  377 (544)
T ss_dssp             HHTTCCCBCCSSSCCTTTSCS------CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHH
T ss_pred             HHhCCCcccceeccchhcCcc------cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHH
Confidence            988887666668888765311      12478999998643110                                1258


Q ss_pred             HHHHHccCCCCeEEEE
Q 026547          164 HERLMKLLKVGGIAVY  179 (237)
Q Consensus       164 ~~~~~~~L~~gG~lv~  179 (237)
                      ++.+.+.|++||.+++
T Consensus       378 l~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          378 MLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             HHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHhccCceEEE
Confidence            8899999999998654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.67  E-value=1.1e-07  Score=77.67  Aligned_cols=84  Identities=7%  Similarity=0.026  Sum_probs=67.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++..+||++||.|..+..+++.   +++|+|+|.++.+++.|++ ++.    +++++++++..++...+.+.  +..
T Consensus        19 ~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~--g~~   88 (285)
T 1wg8_A           19 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAAL--GVE   88 (285)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHc--CCC
Confidence            4556789999999999999999986   6799999999999999998 643    58999999998764444322  236


Q ss_pred             ceeEEEEeCCCcCc
Q 026547          147 SFDYAFVDADKVNY  160 (237)
Q Consensus       147 ~~D~i~id~~~~~~  160 (237)
                      ++|.|++|.+.+.+
T Consensus        89 ~vDgIL~DLGvSS~  102 (285)
T 1wg8_A           89 RVDGILADLGVSSF  102 (285)
T ss_dssp             CEEEEEEECSCCHH
T ss_pred             CcCEEEeCCccccc
Confidence            89999999776553

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.63  E-value=1.6e-08  Score=77.26  Aligned_cols=89  Identities=9%  Similarity=0.096  Sum_probs=67.7

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||.                 +++|+++.+++.|++++.     .+++++++|+.+....    +...++
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~----~~~~~~   63 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQS----AHKESS   63 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGG----CCCSSC
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccc----cCCCCC
Confidence            45678999999975                 239999999999998753     2489999998765210    012478


Q ss_pred             eeEEEEeCC---C-cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          148 FDYAFVDAD---K-VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       148 ~D~i~id~~---~-~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ||+|++...   . .+...+++++.+.|+|||.+++.+.
T Consensus        64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            999998532   2 4568999999999999999999644

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.57  E-value=1.2e-06  Score=80.86  Aligned_cols=139  Identities=13%  Similarity=0.112  Sum_probs=90.3

Q ss_pred             cHHHHHHHHHHhh--CCCCCccccHHHHHHHHHHHh--h----cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeC
Q 026547           34 PEHLKEIRDVTAD--HPRAMMSTAPDAGQLMAMLLK--L----VNAKKTIEIGVFTGYSLLLTALTIP--EDGQIMAIDV  103 (237)
Q Consensus        34 ~~~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~--~----~~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~vD~  103 (237)
                      ++....+..+...  ...+...+.+..+.+|..++.  .    ..+.+|||.|||+|...+.+++.++  ...+++|+|+
T Consensus       277 DdL~ell~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEI  356 (878)
T 3s1s_A          277 DELAELIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDI  356 (878)
T ss_dssp             HHHHHHHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECS
T ss_pred             HHHHHHHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEEC
Confidence            3444444454432  233444567788888887732  1    1356999999999999999988764  1358999999


Q ss_pred             CchHHHHH--HHHHHh----cCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC------------------
Q 026547          104 NRETYEIG--LPVIKK----AGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN------------------  159 (237)
Q Consensus       104 ~~~~~~~a--~~~~~~----~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~------------------  159 (237)
                      ++.+++.|  +.++..    .+.. ...+...|..+....      ...+||+|+.+.+-..                  
T Consensus       357 Dp~Al~LAK~RlNL~lN~LlhGi~-~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g  429 (878)
T 3s1s_A          357 ETLFLELLSIRLGLLFPQLVSSNN-APTITGEDVCSLNPE------DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQL  429 (878)
T ss_dssp             CGGGHHHHHHHHHTTSTTTCBTTB-CCEEECCCGGGCCGG------GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhcCCC-cceEEecchhccccc------ccCCCCEEEECCCccccccchhhhhhHHHHhhhh
Confidence            99999999  555433    2221 235555665542111      1378999998743200                  


Q ss_pred             --------------cHHHHHHHHccCCCCeEEEE
Q 026547          160 --------------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       160 --------------~~~~~~~~~~~L~~gG~lv~  179 (237)
                                    +..+++.+.++|++||.+++
T Consensus       430 ~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          430 TGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             HSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence                          23467778899999998765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.43  E-value=1.7e-06  Score=63.56  Aligned_cols=93  Identities=9%  Similarity=0.061  Sum_probs=65.0

Q ss_pred             HHHHHhh-cCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           62 MAMLLKL-VNAKKTIEIGVFTG-YSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        62 l~~l~~~-~~~~~vLeiG~G~G-~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      ...+.+. ..+.+|||+|||.| ..+.+|++..  +..|+++|+++..++                +++.|+.+....+ 
T Consensus        26 aeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~-   86 (153)
T 2k4m_A           26 AVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI-   86 (153)
T ss_dssp             HHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH-
T ss_pred             HHHHHhcCCCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc-
Confidence            3333433 34679999999999 5999998742  578999999998765                7788887644333 


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                           -+.||+|+.-.........+-.+.+.  -|.-+++-
T Consensus        87 -----Y~~~DLIYsirPP~El~~~i~~lA~~--v~adliI~  120 (153)
T 2k4m_A           87 -----YRGAALIYSIRPPAEIHSSLMRVADA--VGARLIIK  120 (153)
T ss_dssp             -----HTTEEEEEEESCCTTTHHHHHHHHHH--HTCEEEEE
T ss_pred             -----cCCcCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEE
Confidence                 16899997666666666666666553  34555554

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.35  E-value=5.1e-07  Score=73.78  Aligned_cols=111  Identities=13%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..++..+.. .++..+||+-+|+|..++.+++.   ..+++.+|.++..++..+++++.   .++++++++|+...+..+
T Consensus        81 ~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l  153 (283)
T 2oo3_A           81 LEYISVIKQ-INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNAL  153 (283)
T ss_dssp             HHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHh
Confidence            345555544 45778999999999999998872   57999999999999999998864   357999999998888776


Q ss_pred             hhcCCCCCceeEEEEeCCCc---CcHHHHHHHHc--cCCCCeEEEE
Q 026547          139 LKDSENEGSFDYAFVDADKV---NYWNYHERLMK--LLKVGGIAVY  179 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~---~~~~~~~~~~~--~L~~gG~lv~  179 (237)
                      ...   ..+||+||+|.+-.   .+...++.+.+  .+.++|++++
T Consensus       154 ~~~---~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          154 LPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             cCC---CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            322   35799999998643   35555555543  5678999886

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.29  E-value=3.3e-06  Score=70.52  Aligned_cols=86  Identities=16%  Similarity=0.167  Sum_probs=68.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++..+||..+|.|..+..+++.++++++|+++|.++++++.++ .+    ..+++++++++..++...+.+.+. .++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~g~-~~~  128 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAERDL-IGK  128 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHTTC-TTC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhcCC-CCc
Confidence            456789999999999999999998876899999999999999884 33    246899999998877655543211 136


Q ss_pred             eeEEEEeCCCcC
Q 026547          148 FDYAFVDADKVN  159 (237)
Q Consensus       148 ~D~i~id~~~~~  159 (237)
                      +|.|++|.+.+.
T Consensus       129 vDgILfDLGVSS  140 (347)
T 3tka_A          129 IDGILLDLGVSS  140 (347)
T ss_dssp             EEEEEEECSCCH
T ss_pred             ccEEEECCccCH
Confidence            999999977654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.98  E-value=4.9e-06  Score=67.54  Aligned_cols=115  Identities=13%  Similarity=0.087  Sum_probs=67.4

Q ss_pred             cHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      ++...+++...-  ...+..+|||+|||.|.++.+++...+ ...++++|+.-+........ ...+  .++..+.+++ 
T Consensus        57 SRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~-  131 (277)
T 3evf_A           57 SRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKT-  131 (277)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSC-
T ss_pred             ccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCC--CCeEEEeccc-
Confidence            344444443332  234556999999999999999887543 45778888764431000000 0001  1344455554 


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCc----Cc-----HHHHHHHHccCCCC-eEEEEe
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKV----NY-----WNYHERLMKLLKVG-GIAVYD  180 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~----~~-----~~~~~~~~~~L~~g-G~lv~~  180 (237)
                      +.. .     ...++||+|+.|....    ..     ...++.+.+.|+|| |.+|+.
T Consensus       132 dv~-~-----l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K  183 (277)
T 3evf_A          132 DIH-R-----LEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK  183 (277)
T ss_dssp             CTT-T-----SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eeh-h-----cCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence            211 1     1247899999996433    11     12356667899999 999994

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.91  E-value=2.1e-05  Score=66.65  Aligned_cols=87  Identities=8%  Similarity=0.129  Sum_probs=60.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+||+.|.+|..+++.   +++|++||+.+ +..    .+..   .++|+++++|+....+       ...+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l~~----~l~~---~~~V~~~~~d~~~~~~-------~~~~  270 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-MAQ----SLMD---TGQVTWLREDGFKFRP-------TRSN  270 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-CCH----HHHT---TTCEEEECSCTTTCCC-------CSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-cCh----hhcc---CCCeEEEeCccccccC-------CCCC
Confidence            346789999999999999999874   67999999764 211    1111   2469999999877643       2468


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKV  173 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~  173 (237)
                      +|+|++|... +.....+.+.+.|..
T Consensus       271 ~D~vvsDm~~-~p~~~~~l~~~wl~~  295 (375)
T 4auk_A          271 ISWMVCDMVE-KPAKVAALMAQWLVN  295 (375)
T ss_dssp             EEEEEECCSS-CHHHHHHHHHHHHHT
T ss_pred             cCEEEEcCCC-ChHHhHHHHHHHHhc
Confidence            9999999754 333444444443333

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.88  E-value=3.4e-06  Score=68.58  Aligned_cols=115  Identities=12%  Similarity=0.031  Sum_probs=68.0

Q ss_pred             cHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           55 APDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      ++...+++...-  ...+..+|||+|||.|.++.+++...+ ...|+++|+.......+... ...+  .++..+..++.
T Consensus        73 SRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~d  148 (282)
T 3gcz_A           73 SRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTD  148 (282)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCC
T ss_pred             cHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcc
Confidence            344444443332  344667999999999999999887554 45789999876532111110 0011  12333333321


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcC---------cHHHHHHHHccCCCC--eEEEEe
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVN---------YWNYHERLMKLLKVG--GIAVYD  180 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~---------~~~~~~~~~~~L~~g--G~lv~~  180 (237)
                       .. .+     ...++|+|++|.....         ....++.+.+.|+||  |.+|+.
T Consensus       149 -v~-~l-----~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          149 -VF-NM-----EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             -GG-GS-----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             -hh-hc-----CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence             11 11     2478999999965431         113456666899999  999985

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.87  E-value=4.5e-05  Score=68.19  Aligned_cols=101  Identities=10%  Similarity=0.052  Sum_probs=74.6

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCchHHHHHHHHHHhcC
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQIMAIDVNRETYEIGLPVIKKAG  119 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~~~  119 (237)
                      .-+++...++|..++....+.+|+|-.||+|...+...+++..            ...++|+|+++.....|+-++--.|
T Consensus       199 fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg  278 (530)
T 3ufb_A          199 FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHG  278 (530)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHT
T ss_pred             ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcC
Confidence            3467888999999988888889999999999988766554321            2469999999999999999887777


Q ss_pred             CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC
Q 026547          120 VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       120 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      .. ..++..+|.+......  . ....+||+|+.+.+
T Consensus       279 ~~-~~~I~~~dtL~~~~~~--~-~~~~~fD~Il~NPP  311 (530)
T 3ufb_A          279 LE-YPRIDPENSLRFPLRE--M-GDKDRVDVILTNPP  311 (530)
T ss_dssp             CS-CCEEECSCTTCSCGGG--C-CGGGCBSEEEECCC
T ss_pred             Cc-cccccccccccCchhh--h-cccccceEEEecCC
Confidence            64 3567888876431110  0 11357999998743

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.86  E-value=8.8e-05  Score=61.39  Aligned_cols=104  Identities=15%  Similarity=0.205  Sum_probs=67.1

Q ss_pred             CCEEEEEcccccHHHHHHH---hhCCCCC--EEEEEeCCc--------h-HHHHHHHHHHhcCC--CCc--EEEEeccch
Q 026547           71 AKKTIEIGVFTGYSLLLTA---LTIPEDG--QIMAIDVNR--------E-TYEIGLPVIKKAGV--DHK--INFIESEAL  132 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la---~~~~~~~--~v~~vD~~~--------~-~~~~a~~~~~~~~~--~~~--v~~~~~d~~  132 (237)
                      .-+|||+|-|+|++.+...   ....+..  +++++|..+        + ..+..+..+.....  ..+  .++..||+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            3589999999999765322   1112244  457777532        1 22233333333211  123  467889999


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCC--cC----cHHHHHHHHccCCCCeEEEE
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADK--VN----YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~--~~----~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +.++.+.     ...+|++|.|+-.  .+    ..++|+.+.++++|||+++.
T Consensus       177 ~~l~~l~-----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          177 KRIKEVE-----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHGGGCC-----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHhhhc-----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            9888761     2479999999732  22    36899999999999999985

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.85  E-value=4.9e-05  Score=64.39  Aligned_cols=81  Identities=9%  Similarity=0.025  Sum_probs=60.9

Q ss_pred             CCCCccccHHHHHHHHHHHhhcC------CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVN------AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD  121 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~------~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  121 (237)
                      +..+. .++...+-+...+...+      +..|||||.|.|..|..|+.... ..+|++||+++.++...++.+ .   .
T Consensus        31 GQnFL-~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~  104 (353)
T 1i4w_A           31 GFKYL-WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---G  104 (353)
T ss_dssp             GCCCB-CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---T
T ss_pred             CcCcc-CCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---C
Confidence            44444 35555555555555443      57999999999999999997532 458999999999998888766 2   2


Q ss_pred             CcEEEEeccchHH
Q 026547          122 HKINFIESEALSV  134 (237)
Q Consensus       122 ~~v~~~~~d~~~~  134 (237)
                      ++++++.+|+.++
T Consensus       105 ~~l~ii~~D~l~~  117 (353)
T 1i4w_A          105 SPLQILKRDPYDW  117 (353)
T ss_dssp             SSCEEECSCTTCH
T ss_pred             CCEEEEECCccch
Confidence            5799999999775

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.81  E-value=3e-05  Score=71.56  Aligned_cols=111  Identities=12%  Similarity=0.053  Sum_probs=75.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCchHHHHHHH--------------HHHhcCC----
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQIMAIDVNRETYEIGLP--------------VIKKAGV----  120 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-------~~----~~~v~~vD~~~~~~~~a~~--------------~~~~~~~----  120 (237)
                      +.-+|+|+|.|+|++.+.+.+..       |.    ..+++++|..|-..+..++              .++.+..    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            44699999999999888665542       11    2579999996643333332              2332211    


Q ss_pred             ------C-C--cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          121 ------D-H--KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       121 ------~-~--~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                            . +  .++++.||+.+.++.+...  ....+|.+|+|+....      ..++|..+.+++++||.+....+
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~  212 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTA  212 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence                  1 1  4678899999998875210  1268999999975433      37899999999999999876543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.78  E-value=4.6e-06  Score=66.87  Aligned_cols=96  Identities=13%  Similarity=0.057  Sum_probs=59.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhh--CCC-CCEEEEEeC--CchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALT--IPE-DGQIMAIDV--NRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKD  141 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~--~~~-~~~v~~vD~--~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~  141 (237)
                      +.++.+|||+||+.|.++.+.+..  ... .+.++++|+  .|-...       ..|. +-+.++++ |..+.       
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-~~i~~~~G~Df~~~-------  135 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-NIVTMKSGVDVFYK-------  135 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-GGEEEECSCCGGGS-------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-eEEEeeccCCccCC-------
Confidence            345679999999999999999886  221 245555552  111000       0111 22466667 88763       


Q ss_pred             CCCCCceeEEEEeCCCcC---------cHHHHHHHHccCCCCe-EEEEe
Q 026547          142 SENEGSFDYAFVDADKVN---------YWNYHERLMKLLKVGG-IAVYD  180 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~---------~~~~~~~~~~~L~~gG-~lv~~  180 (237)
                        ...++|+|++|.....         ....++.+.+.|+||| .+++-
T Consensus       136 --~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 --PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             --CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             --CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence              1368999999964322         1124666668999999 88884

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.78  E-value=0.00013  Score=57.84  Aligned_cols=112  Identities=10%  Similarity=0.032  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHH--hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cc
Q 026547           55 APDAGQLMAMLL--KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~--~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~  131 (237)
                      ++...++....-  ...++..|||+||+.|.++.+.+.... ..+|+++|+-+.--+.- ..++..|. +.|+|+.+ |.
T Consensus        61 SRa~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv  137 (267)
T 3p8z_A           61 SRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDV  137 (267)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCG
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccce
Confidence            444444443332  345667999999999999999887654 45899999855322100 00122344 45999999 86


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCc---------HHHHHHHHccCCCCeEEEE
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNY---------WNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~---------~~~~~~~~~~L~~gG~lv~  179 (237)
                      ....         ..++|.|++|...+..         ...++.+.+.|++ |-++|
T Consensus       138 ~~~~---------~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          138 FYLP---------PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             GGCC---------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             eecC---------CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            3331         3789999999654331         2356666688988 67776

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.74  E-value=0.00015  Score=59.90  Aligned_cols=48  Identities=8%  Similarity=0.042  Sum_probs=42.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG  119 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  119 (237)
                      .++..|||++||+|..++.++..   +.+++|+|+++.+++.|+++++...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            46789999999999999988774   5699999999999999999998764

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.64  E-value=3.3e-05  Score=63.20  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=61.4

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCCCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSENEG  146 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~  146 (237)
                      ..++.+|||+||+.|.++.++++..+ ...|+++|+.......... ....+. +-+.+..+ |...+         ..+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l---------~~~  146 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTM---------PTE  146 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTS---------CCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCC-ceEEeecCceeeec---------CCC
Confidence            34567999999999999999997544 4578899986532100000 000010 11333322 22211         247


Q ss_pred             ceeEEEEeCCCcC---------cHHHHHHHHccCCCC-eEEEEe
Q 026547          147 SFDYAFVDADKVN---------YWNYHERLMKLLKVG-GIAVYD  180 (237)
Q Consensus       147 ~~D~i~id~~~~~---------~~~~~~~~~~~L~~g-G~lv~~  180 (237)
                      ++|+|++|.....         ....++.+.+.|+|| |.+|+.
T Consensus       147 ~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          147 PSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            8999999965431         123466667899999 999996

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.59  E-value=0.00013  Score=59.61  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=70.3

Q ss_pred             cHHHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cc
Q 026547           55 APDAGQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~  131 (237)
                      ++...++....-.  +.+...|||+||++|.++.+.+.... ..+|+++|+-..--+.- ..++..+. +-|.++.+ |+
T Consensus        77 SR~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv  153 (321)
T 3lkz_A           77 SRGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDV  153 (321)
T ss_dssp             STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCT
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCH
Confidence            4444444443322  34566999999999999998887654 45799999865411000 00011222 23888887 76


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCc---------HHHHHHHHccCCCC-eEEEE
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNY---------WNYHERLMKLLKVG-GIAVY  179 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~---------~~~~~~~~~~L~~g-G~lv~  179 (237)
                      ...-         ..++|+|++|...+..         ...++.+.+.|++| |-++|
T Consensus       154 ~~l~---------~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          154 FYRP---------SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             TSSC---------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             hhCC---------CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            4431         3679999999764331         23556666888888 88777

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.43  E-value=0.00034  Score=59.82  Aligned_cols=77  Identities=19%  Similarity=0.078  Sum_probs=45.8

Q ss_pred             CCEEEEEcccccHHHHHHHhh-------------C---CCCCEEEEEeCC-----------chHHHHHHHHHHhcCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALT-------------I---PEDGQIMAIDVN-----------RETYEIGLPVIKKAGVDHK  123 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~-------------~---~~~~~v~~vD~~-----------~~~~~~a~~~~~~~~~~~~  123 (237)
                      +-+|+|+||++|.+|+.+...             .   ++..+|+.-|+-           +.+.+..+   +..|....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence            568999999999999977654             1   125678888875           33332221   12232112


Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEe
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVD  154 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id  154 (237)
                      .-|+.|..-.+-..+    ++.+++|+|+..
T Consensus       130 ~~f~~gvpgSFy~rl----fp~~S~d~v~Ss  156 (384)
T 2efj_A          130 SCLIGAMPGSFYSRL----FPEESMHFLHSC  156 (384)
T ss_dssp             SEEEEECCSCTTSCC----SCTTCEEEEEEE
T ss_pred             ceEEEecchhhhhcc----CCCCceEEEEec
Confidence            355555544433333    346899999875

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.41  E-value=0.00083  Score=57.28  Aligned_cols=37  Identities=11%  Similarity=0.169  Sum_probs=26.1

Q ss_pred             CCEEEEEcccccHHHHHHHh--------hC------CCCCEEEEEeCCchH
Q 026547           71 AKKTIEIGVFTGYSLLLTAL--------TI------PEDGQIMAIDVNRET  107 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~--------~~------~~~~~v~~vD~~~~~  107 (237)
                      +.+|+|+||++|.+|+.+..        ..      ++..+|+.-|+-..-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~ND  103 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSND  103 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccc
Confidence            56899999999999987732        11      235678888865433

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.36  E-value=0.00093  Score=61.39  Aligned_cols=109  Identities=15%  Similarity=0.125  Sum_probs=72.5

Q ss_pred             CEEEEEcccccHHHHHHHhhC-------C----CCCEEEEEeC---CchHHHH-----------HHHHHHhcCCC-----
Q 026547           72 KKTIEIGVFTGYSLLLTALTI-------P----EDGQIMAIDV---NRETYEI-----------GLPVIKKAGVD-----  121 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~-------~----~~~~v~~vD~---~~~~~~~-----------a~~~~~~~~~~-----  121 (237)
                      -+|+|+|-|+|++.+...+..       |    ...+++++|.   +++.+..           +++.++.....     
T Consensus        68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  147 (676)
T 3ps9_A           68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH  147 (676)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred             eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence            489999999999877654432       1    1246899998   4444432           22333333210     


Q ss_pred             --------CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc------CcHHHHHHHHccCCCCeEEEEeCc
Q 026547          122 --------HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV------NYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       122 --------~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~------~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                              -++++..||+.+.++.+...  ....||.+|+|+...      ...++|..+.+++++||.+.....
T Consensus       148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~  220 (676)
T 3ps9_A          148 RLLLDAGRVTLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS  220 (676)
T ss_dssp             EEEEGGGTEEEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             EEEecCCcEEEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence                    23567889999988875211  126799999997432      246889999999999999886543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.25  E-value=0.00084  Score=58.04  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             cCCCEEEEEcccccHHHHHHH-hhCCCCCEEEEEeCCchHHHHHHHHHHh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTA-LTIPEDGQIMAIDVNRETYEIGLPVIKK  117 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la-~~~~~~~~v~~vD~~~~~~~~a~~~~~~  117 (237)
                      .++..|+|||++.|..++.++ +..++.++|+++|++|...+..+++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            567899999999999999988 5555348999999999999999999987

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.23  E-value=0.001  Score=56.53  Aligned_cols=103  Identities=19%  Similarity=0.275  Sum_probs=67.2

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++++||.+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |.+.-+.....+..+.+..+.     .
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~~-----~  256 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEIT-----D  256 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT-----T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHc----CCCEEecCCccCHHHHHHHhc-----C
Confidence            455678999999876 777788888753 33799999999888877653    532111111122223333321     2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +.+|+||-...   ....++...+.|+++|.+++-..
T Consensus       257 gg~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          257 GGVNFALESTG---SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             SCEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCC---CHHHHHHHHHHHhcCCEEEEeCC
Confidence            37999975443   24667888899999999987544

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.18  E-value=0.0012  Score=56.79  Aligned_cols=108  Identities=16%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc-hHHHHHHhhcC
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA-LSVLDQLLKDS  142 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~  142 (237)
                      .+...++++||.+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .|. +.+.....+. .+.+..+..  
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~~--  251 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQILG--  251 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHHS--
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHhC--
Confidence            44566788999999876 778888888754 3399999999988776653    453 1121112232 333333311  


Q ss_pred             CCCCceeEEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                        ...+|+||-......           ....++.+++.|++||.+++-..
T Consensus       252 --g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          252 --KPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             --SSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             --CCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence              237999975544322           13467888899999999886543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.13  E-value=0.0011  Score=53.55  Aligned_cols=48  Identities=10%  Similarity=0.075  Sum_probs=40.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG  119 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  119 (237)
                      .++..|||..||+|..+....+.   +.+++|+|+++..++.++++++..+
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            56789999999999998887764   5699999999999999999997655

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.11  E-value=0.002  Score=54.04  Aligned_cols=102  Identities=13%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +...++++||-+|+|. |..++.+++..  +.+|+++|.+++..+.+++    .|.+.-+.....+..+.+...      
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------  229 (340)
T 3s2e_A          162 TDTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------  229 (340)
T ss_dssp             TTCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------
Confidence            3456778999999875 77888888876  4699999999988877655    453211111112332322221      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+.+|.||....   ....++.+.+.|+++|.++.-..
T Consensus       230 ~g~~d~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          230 IGGAHGVLVTAV---SPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             HSSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEEeCC---CHHHHHHHHHHhccCCEEEEeCC
Confidence            247999976543   35678888899999999987543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.07  E-value=0.0009  Score=51.50  Aligned_cols=101  Identities=16%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++++||.+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..   ..+..+..+....+.+. ..
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~---~~~d~~~~~~~~~~~~~-~~  104 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVE---YVGDSRSVDFADEILEL-TD  104 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCS---EEEETTCSTHHHHHHHH-TT
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC---EEeeCCcHHHHHHHHHH-hC
Confidence            3456789999994  5566666666653  5699999999877665543    3532   12221111222222111 11


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|+++....    ...++.+.+.|++||.++.-.
T Consensus       105 ~~~~D~vi~~~g----~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          105 GYGVDVVLNSLA----GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             TCCEEEEEECCC----THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCCeEEEECCc----hHHHHHHHHHhccCCEEEEEc
Confidence            246999986543    256788889999999988744

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.06  E-value=0.0017  Score=53.08  Aligned_cols=88  Identities=15%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             CCCEEEEEcc------cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           70 NAKKTIEIGV------FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        70 ~~~~vLeiG~------G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .+.+|||+|+      ..|..  .+.+..|.++.|+++|+.+-..           ..+  .+++||..+...       
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~~-------  166 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVHT-------  166 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEEE-------
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEcccccccc-------
Confidence            3579999995      66773  3444455446999999987431           112  449999755321       


Q ss_pred             CCCceeEEEEeCCC--------cC------cHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADK--------VN------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~--------~~------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                       ..+||+|+.|...        .+      ....++.+.+.|+|||.+++-
T Consensus       167 -~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          167 -ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             -SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence             4889999988321        11      234556667899999999997

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.05  E-value=0.00027  Score=59.96  Aligned_cols=108  Identities=12%  Similarity=0.088  Sum_probs=66.2

Q ss_pred             CCEEEEEcccccHHHHHHHhh---------------CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           71 AKKTIEIGVFTGYSLLLTALT---------------IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~---------------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      +-+|+|+||++|.+|+.+...               -++..+|+.-|+...-....-+.+.......+.-|+.|..-.+-
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            357999999999988865544               13357899999877666555444432110012345554433332


Q ss_pred             HHHhhcCCCCCceeEEEEeCC---Cc---------------------------------CcHHHHHHHHccCCCCeEEEE
Q 026547          136 DQLLKDSENEGSFDYAFVDAD---KV---------------------------------NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~---~~---------------------------------~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..+    ++..++|+|+....   .+                                 ++..+++...+.|+|||.+++
T Consensus       132 ~rl----fp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          132 GRL----FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCC----SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hcc----CCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            222    34689999986521   10                                 012346677799999999998


Q ss_pred             eCc
Q 026547          180 DNT  182 (237)
Q Consensus       180 ~~~  182 (237)
                      .-.
T Consensus       208 ~~~  210 (359)
T 1m6e_X          208 TIL  210 (359)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            644

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.02  E-value=0.0017  Score=54.76  Aligned_cols=105  Identities=17%  Similarity=0.226  Sum_probs=68.9

Q ss_pred             HHHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe---ccchHHHHHHh
Q 026547           64 MLLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE---SEALSVLDQLL  139 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~  139 (237)
                      ..+...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|.+   .++.   .+..+.+..+.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE----YGAT---DIINYKNGDIVEQILKAT  231 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH----HTCC---EEECGGGSCHHHHHHHHT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCc---eEEcCCCcCHHHHHHHHc
Confidence            344566788999999865 667778888753 3389999999988777765    3532   2332   23333333331


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                          ....+|+||-....   ...++.+.+.|++||.++.-...
T Consensus       232 ----~g~g~D~v~d~~g~---~~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          232 ----DGKGVDKVVIAGGD---VHTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             ----TTCCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCCC
T ss_pred             ----CCCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEeccc
Confidence                12479999754332   24577788999999999876543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.02  E-value=0.0078  Score=50.39  Aligned_cols=105  Identities=16%  Similarity=0.097  Sum_probs=69.7

Q ss_pred             HhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +...++++||-+|+|.+. .+..+++... +.+|+++|.+++..+.+++    .|...-+.....|..+.+..+.    .
T Consensus       159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t----~  229 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT----G  229 (348)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT----T
T ss_pred             cCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc----C
Confidence            445677899999998654 4555666554 6899999999987766554    3543333444445555444442    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...+|.++.+...   ...++...+.|+++|.+++-..
T Consensus       230 g~g~d~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          230 GLGVQSAIVCAVA---RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SSCEEEEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEEeccC---cchhheeheeecCCceEEEEec
Confidence            3568888766532   4667888899999999887543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.00  E-value=0.006  Score=51.41  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc---chHHHHHHhh
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE---ALSVLDQLLK  140 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~  140 (237)
                      .+...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|.+   .++..+   ..+....+.+
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~  237 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEG  237 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHH
Confidence            34566788999999875 777788888754 3389999999988776654    4542   223222   2233322211


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      . . ...+|+||-...   ....++...+.|+++|.++.-.
T Consensus       238 ~-~-~~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          238 Q-L-GCKPEVTIECTG---AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             H-H-TSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             H-h-CCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEe
Confidence            1 0 157999975443   2456778889999999998754

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.98  E-value=0.0025  Score=53.73  Aligned_cols=76  Identities=14%  Similarity=0.062  Sum_probs=55.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +.+|+|+.||.|..++.+..+--.-..|.++|+++.+++..+.++.      ...++.+|+.+.......    ...+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~----~~~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD----RLSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH----HHCCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcC----cCCcCE
Confidence            4589999999999999988752101369999999999998888863      244678898876532211    126899


Q ss_pred             EEEeCC
Q 026547          151 AFVDAD  156 (237)
Q Consensus       151 i~id~~  156 (237)
                      |+.+.+
T Consensus        72 l~~gpP   77 (343)
T 1g55_A           72 ILMSPP   77 (343)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            987644

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.93  E-value=0.0028  Score=53.82  Aligned_cols=108  Identities=14%  Similarity=0.085  Sum_probs=69.2

Q ss_pred             HHHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc-
Q 026547           64 MLLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD-  141 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-  141 (237)
                      ..+...++++||-+|+|. |..++.+|+... ..+|++++.+++..+.+++    .|..   .++.-...+....+.+. 
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~i~~~~  247 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGAT---ATVDPSAGDVVEAIAGPV  247 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCS---EEECTTSSCHHHHHHSTT
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCC---EEECCCCcCHHHHHHhhh
Confidence            345566788999999865 667778888754 3499999999988877665    3542   22222222222222210 


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+.+|+||-...   ....++.+.+.|++||.+++-..
T Consensus       248 ~~~~gg~Dvvid~~G---~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          248 GLVPGGVDVVIECAG---VAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             SSSTTCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             hccCCCCCEEEECCC---CHHHHHHHHHHhccCCEEEEEec
Confidence            001248999975432   24677888899999999988554

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.92  E-value=0.0035  Score=52.59  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=69.5

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++++||-+|+|. |..++.+++... ..+|+++|.+++..+.+++    .|.+.-+.. ..+..+.+..+..    .
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~-~~~~~~~v~~~t~----g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADAAVKS-GAGAADAIRELTG----G  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-STTHHHHHHHHHG----G
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcC-CCcHHHHHHHHhC----C
Confidence            456778999999865 667778888764 6799999999988877655    454321111 1233333333321    2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..+|+||-...   ....++.+.+.|+++|.+++-...
T Consensus       238 ~g~d~v~d~~G---~~~~~~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          238 QGATAVFDFVG---AQSTIDTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             GCEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CCCeEEEECCC---CHHHHHHHHHHHhcCCEEEEECCC
Confidence            47999975432   245778888999999999886543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.91  E-value=0.008  Score=50.28  Aligned_cols=106  Identities=19%  Similarity=0.110  Sum_probs=70.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ....++++||-+|+|. |..++.+++... ...++++|.+++.++.+++    .|...-+.....+..+....+..    
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----  226 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----  226 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----
Confidence            3456778999999865 445667788765 5578999999988776655    46432222223344444444422    


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ...+|+|+-...   ....++.+.+.|++||.+++-...
T Consensus       227 ~~g~d~v~d~~G---~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          227 LRFNQLILETAG---VPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             GCSSEEEEECSC---SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             cCCccccccccc---ccchhhhhhheecCCeEEEEEecc
Confidence            256888865442   356778888999999999886544

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.90  E-value=0.0054  Score=52.50  Aligned_cols=107  Identities=14%  Similarity=0.080  Sum_probs=68.6

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc-chHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE-ALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~  143 (237)
                      +...++++||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .|.. .+.....+ ..+.+..+.    
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t----  250 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL----  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH----
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh----
Confidence            4566778999999865 777888888764 3489999999988877754    4541 11111112 223333321    


Q ss_pred             CCCceeEEEEeCCCcC------------cHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVN------------YWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+||-......            ....++.+.+.|++||.+++-..
T Consensus       251 ~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          251 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            1247999975443321            23467888899999999987554

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.76  E-value=0.019  Score=48.24  Aligned_cols=107  Identities=11%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcC
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDS  142 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~  142 (237)
                      .+...++++||-+|+|. |..++.+++..  +.+|++++.+++..+.+++    .|.+.-+.... .+..+.+.......
T Consensus       163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~~  236 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRSA  236 (352)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhccc
Confidence            34566788999999864 66777788875  4679999999988877654    45431111111 22223232221100


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       ....+|+||-....   ...++...+.|+++|.++.-.
T Consensus       237 -~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          237 -IGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             -SSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             -cCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence             01469999754432   356778889999999998754

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.75  E-value=0.0046  Score=53.11  Aligned_cols=103  Identities=7%  Similarity=0.059  Sum_probs=62.7

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe---ccchHHHHHHhhcCC
Q 026547           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE---SEALSVLDQLLKDSE  143 (237)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~~  143 (237)
                      ..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |.+   .++.   .+..+.+..+.    
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t----  278 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYT----  278 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHT----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHh----
Confidence            45678999999854 556777888754 34999999999888877653    532   2232   23333333331    


Q ss_pred             CCCceeEEEEeCCCc--CcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKV--NYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~--~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+||-.....  .....++.+++.++++|.+++-..
T Consensus       279 ~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          279 NGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             TTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            124799997544332  122223333344599999988654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.74  E-value=0.014  Score=49.19  Aligned_cols=108  Identities=9%  Similarity=0.006  Sum_probs=69.0

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhc
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKD  141 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~  141 (237)
                      .+...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++. .    ...+.+...  +..++...+.+.
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~  247 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVES  247 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHH
Confidence            34566788999999865 667778888754 23499999999999888875 2    112333211  122232222111


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       .....+|+||-...   ....++.+.+.|++||.+++-..
T Consensus       248 -t~g~g~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          248 -FGGIEPAVALECTG---VESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             -TSSCCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECCC
T ss_pred             -hCCCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEcc
Confidence             11357999975433   24567888899999999987543

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=96.73  E-value=0.012  Score=43.30  Aligned_cols=102  Identities=13%  Similarity=0.113  Sum_probs=68.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      ..-|||+|-|.|..=-++...+| +-+|+.+|..-..      +-.  -..+.-+++.||+.+.++..... + ..+.-+
T Consensus        41 ~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~------hp~--~~P~~e~~ilGdi~~tL~~~~~r-~-g~~a~L  109 (174)
T 3iht_A           41 SGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVAS------HPD--STPPEAQLILGDIRETLPATLER-F-GATASL  109 (174)
T ss_dssp             CSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCC------CGG--GCCCGGGEEESCHHHHHHHHHHH-H-CSCEEE
T ss_pred             CCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeecc------CCC--CCCchHheecccHHHHHHHHHHh-c-CCceEE
Confidence            45799999999999899999998 8899999963211      000  01234578999999998875332 1 356667


Q ss_pred             EEEeCCCcCcHH------HH-HHHHccCCCCeEEEEeCcC
Q 026547          151 AFVDADKVNYWN------YH-ERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       151 i~id~~~~~~~~------~~-~~~~~~L~~gG~lv~~~~~  183 (237)
                      +..|....+...      .+ ..+.++|.+||++|-+..+
T Consensus       110 aHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A          110 VHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             EEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            777755433221      11 1223799999999987765

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.71  E-value=0.0057  Score=52.20  Aligned_cols=102  Identities=11%  Similarity=0.015  Sum_probs=67.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh-hcCCCCCceeE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL-KDSENEGSFDY  150 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~~~~D~  150 (237)
                      .+++|+.||.|..++.+..+-  -..|.++|+++..++..+.++      +...++++|+.+...... ........+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            479999999999999887752  235779999999988877765      236778899877543211 00001368999


Q ss_pred             EEEeCCCcC----------------cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          151 AFVDADKVN----------------YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       151 i~id~~~~~----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+.+.+++.                +.++++. .+.++| -++++.|+.
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~-v~~~~P-~~~v~ENV~  121 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRL-VSELQP-LFFLAENVP  121 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHHHH-HHHHCC-SEEEEEECT
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHHHH-HHHhCC-CEEEEecch
Confidence            998755322                1223333 356778 567777764

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.69  E-value=0.055  Score=44.79  Aligned_cols=111  Identities=9%  Similarity=0.013  Sum_probs=72.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--CCcEEEEeccchH-HHHHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--DHKINFIESEALS-VLDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~~~~~~~~~~~~~  146 (237)
                      .++.||++|||.=.  ..+....+.+.+++=|| .|+.++..++.+.+.+.  .++.+++.+|..+ ++..+...++...
T Consensus       102 g~~QvV~LGaGlDT--ra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDS--RAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCC--HHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCc--hhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            45789999995544  43332224357999999 69999999999987553  4578889999876 3333332212122


Q ss_pred             ceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..-++++-+.     ......+++.+...+.+|+.|+++-+.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            3334433332     223456788888888899999998754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.62  E-value=0.0046  Score=51.61  Aligned_cols=103  Identities=13%  Similarity=0.099  Sum_probs=66.4

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +...++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+.+   +.|...-+.....+..+.+...     
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~-----  214 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKRE-----  214 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHH-----
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHh-----
Confidence            45567889999998  5577777777764  5699999999887766532   3354211111112222333322     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..+.+|++|-....    ..++.+.+.|+++|.+++-..
T Consensus       215 ~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          215 CPKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             CTTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCceEEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence            13579998755432    467888899999999987543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.59  E-value=0.008  Score=50.96  Aligned_cols=100  Identities=15%  Similarity=0.261  Sum_probs=65.8

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-----cchHHHHHHhh
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-----EALSVLDQLLK  140 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~  140 (237)
                      ...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|.+   .++.-     +..+.+..+  
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~--  257 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEK--  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH--
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHH--
Confidence            455678999999864 666777887653 3389999999998877654    4542   22221     222333332  


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                         ..+.+|+||-...   ....++.+.+.|+++ |.++.-..
T Consensus       258 ---t~gg~Dvvid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          258 ---TNGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             ---TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ---hCCCCCEEEECCC---CHHHHHHHHHHHhcCCCEEEEEcc
Confidence               1247999975432   245678888999999 99887543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.58  E-value=0.0095  Score=50.36  Aligned_cols=99  Identities=16%  Similarity=0.082  Sum_probs=66.5

Q ss_pred             HHhhcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHHHh
Q 026547           65 LLKLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQLL  139 (237)
Q Consensus        65 l~~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~  139 (237)
                      .+...++++||-+|  .|.|..++.+++..  +.+|++++.+++..+.+++    .|..   .++..   +..+.+... 
T Consensus       158 ~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~-  227 (362)
T 2c0c_A          158 LGGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQE-  227 (362)
T ss_dssp             HTCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH-
T ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHh-
Confidence            34556788999999  45677888888875  5699999999887776654    4532   22222   222233222 


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                          ....+|+||-....    ..++.+.+.|+++|.+++-.
T Consensus       228 ----~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          228 ----YPEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             ----CTTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             ----cCCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence                12579999755432    56788889999999988744

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.57  E-value=0.011  Score=50.12  Aligned_cols=100  Identities=17%  Similarity=0.289  Sum_probs=65.8

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-----cchHHHHHHhh
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-----EALSVLDQLLK  140 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~  140 (237)
                      ...++++||-+|+|. |..++.+|+... ..+|++++.+++..+.+++    .|.+   .++.-     +..+.+..+. 
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~-  259 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMT-  259 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHH-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHHh-
Confidence            445678999999764 667778888753 2389999999998887764    4542   22221     2222233221 


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                          .+.+|+||-...   ....++.+.+.|+++ |.++.-..
T Consensus       260 ----~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          260 ----NGGVDFSLECVG---NVGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             ----TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ----CCCCCEEEECCC---CHHHHHHHHHHhhcCCcEEEEEcC
Confidence                247999975443   245678888999999 99887543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.57  E-value=0.0035  Score=53.08  Aligned_cols=101  Identities=15%  Similarity=0.087  Sum_probs=66.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHHHhhc
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQLLKD  141 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~  141 (237)
                      +...++++||-+|+|. |..++.+++..  +.+|++++.+++..+.+++    .|..   .++..   +..+.+..+.  
T Consensus       185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~v~~~~--  253 (363)
T 3uog_A          185 GHLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGAD---HGINRLEEDWVERVYALT--  253 (363)
T ss_dssp             TCCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHH--
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCC---EEEcCCcccHHHHHHHHh--
Confidence            3455678999999775 66777788875  5699999999988877655    3542   22222   2233333332  


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                        ....+|+||-....    ..++.+.+.|+++|.+++-...
T Consensus       254 --~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          254 --GDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             --TTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             --CCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence              12479999866542    2356677899999999876543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.56  E-value=0.031  Score=47.30  Aligned_cols=97  Identities=18%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++.+||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++    .|..   .++.....+....+      .
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~------~  255 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------L  255 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh------h
Confidence            456778999999874 66777888875  5689999999998887765    3532   23332222333332      2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..+|+||-......   .++.+.+.|+++|.++.-.
T Consensus       256 ~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          256 KSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             TCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             cCCCEEEECCCCHH---HHHHHHHHhccCCEEEEec
Confidence            57999975544322   3566789999999988744

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.55  E-value=0.0058  Score=51.97  Aligned_cols=105  Identities=22%  Similarity=0.287  Sum_probs=67.6

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE--eccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI--ESEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~  142 (237)
                      +...++.+||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .|.+.-+...  ..+..+.+..+    
T Consensus       189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~----  259 (378)
T 3uko_A          189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDL----  259 (378)
T ss_dssp             TCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHH----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHh----
Confidence            3445678999999864 667778888754 3389999999998876654    4542111111  12223333333    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCcC
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNTL  183 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~  183 (237)
                       ..+.+|+||-...   ....++.+.+.|++| |.+++-...
T Consensus       260 -~~gg~D~vid~~g---~~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          260 -TDGGVDYSFECIG---NVSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             -TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             -cCCCCCEEEECCC---CHHHHHHHHHHhhccCCEEEEEccc
Confidence             1348999975433   346778888999996 998876543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.55  E-value=0.01  Score=50.32  Aligned_cols=100  Identities=19%  Similarity=0.272  Sum_probs=65.7

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-----cchHHHHHHhh
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-----EALSVLDQLLK  140 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~  140 (237)
                      ...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|.+   .++.-     +..+.+..+. 
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~~~-  262 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITELT-  262 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHH-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHHHh-
Confidence            345678999999864 667778888754 3389999999998877654    4542   22221     2223333321 


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                          .+.+|+||-...   ....++.+.+.|+++ |.+++-..
T Consensus       263 ----~~g~Dvvid~~G---~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          263 ----AGGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             ----TSCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ----CCCccEEEECCC---CHHHHHHHHHHhhcCCCEEEEECC
Confidence                247999974432   245678888999999 99887543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.49  E-value=0.01  Score=50.20  Aligned_cols=100  Identities=18%  Similarity=0.306  Sum_probs=65.5

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-----cchHHHHHHhh
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-----EALSVLDQLLK  140 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~  140 (237)
                      ...++++||-+|+|. |..++.+|+... ..+|++++.+++..+.+++    .|..   .++..     +..+.+..+. 
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~v~~~~-  257 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKE----FGAT---ECINPQDFSKPIQEVLIEMT-  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----HTCS---EEECGGGCSSCHHHHHHHHT-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCc---eEeccccccccHHHHHHHHh-
Confidence            345678999999764 556777787653 2389999999998887764    3542   22221     2222333321 


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                          .+.+|+||-...   ....++.+.+.|+++ |.++.-..
T Consensus       258 ----~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          258 ----DGGVDYSFECIG---NVKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             ----TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ----CCCCCEEEECCC---cHHHHHHHHHhhccCCcEEEEEec
Confidence                247999975443   245678888999999 99887543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.49  E-value=0.01  Score=50.34  Aligned_cols=100  Identities=15%  Similarity=0.304  Sum_probs=65.6

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-----cchHHHHHHhh
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-----EALSVLDQLLK  140 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~~~~~~~  140 (237)
                      ...++++||-+|+|. |..++.+|+... ..+|++++.+++..+.+++    .|..   .++..     +..+.+..+. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~-  258 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEMS-  258 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHHh-
Confidence            445678999999765 666777888753 2389999999998887654    4542   22221     2223333321 


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                          .+.+|+||-...   ....++...+.|+++ |.++.-..
T Consensus       259 ----~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          259 ----NGGVDFSFEVIG---RLDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             ----TSCBSEEEECSC---CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             ----CCCCcEEEECCC---CHHHHHHHHHHhhcCCcEEEEecc
Confidence                247999975443   245678888999999 99887543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.48  E-value=0.0039  Score=52.06  Aligned_cols=99  Identities=17%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe---ccchHHHHHHhhc
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE---SEALSVLDQLLKD  141 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~  141 (237)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++.++.+++    .|..   .++.   .+..+.+....  
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~--  213 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKFT--  213 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHT--
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHHh--
Confidence            3456789999994  5566777788764  5699999999888776654    3532   2222   22333333331  


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                        ....+|+||-....    ..++.+.+.|+++|.++.-..
T Consensus       214 --~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          214 --NGKGVDASFDSVGK----DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             --TTSCEEEEEECCGG----GGHHHHHHHEEEEEEEEECCC
T ss_pred             --CCCCceEEEECCCh----HHHHHHHHHhccCCEEEEEcC
Confidence              13579999755443    456778899999999988543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.46  E-value=0.031  Score=46.73  Aligned_cols=101  Identities=17%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc-hHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA-LSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  144 (237)
                      .. ++++||-+|+|. |..++.+|+...++.+|++++.+++..+.+++    .|.+   .++.-+. .+....+..    
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~----  235 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLTD----  235 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHHT----
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhhc----
Confidence            55 788999999864 56677788775114689999999988877765    3532   2222111 233333321    


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...+|+||-...   ....++.+.+.|+++|.++.-..
T Consensus       236 g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          236 GLGASIAIDLVG---TEETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             TCCEEEEEESSC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCccEEEECCC---ChHHHHHHHHHhhcCCEEEEeCC
Confidence            247999975443   24467888899999999887543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.41  E-value=0.0083  Score=49.95  Aligned_cols=101  Identities=11%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSE  143 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  143 (237)
                      ...++++||.+|+  |.|..+..+++..  +.+|++++.+++.++.+++    .|....+.... .+..+.+....    
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----  211 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS----  211 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC----
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh----
Confidence            3456789999997  5566666676654  5699999999887776633    34321111111 22222333221    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       .+.+|+++.....    ..++.+.+.|++||.+++-..
T Consensus       212 -~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          212 -PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             -TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred             -CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEec
Confidence             2579999766542    357888899999999887543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.41  E-value=0.0055  Score=50.94  Aligned_cols=101  Identities=8%  Similarity=0.013  Sum_probs=64.8

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ..++++||-+|  .|.|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+....    ..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~~----~~  207 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAWETIDYSHEDVAKRVLELT----DG  207 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHh----CC
Confidence            45678999998  34577777777764  5699999999988877764    3532111111122223333321    12


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..+|+||-....    ..++.+.+.|+++|.+++-..
T Consensus       208 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          208 KKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CCEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence            579998755443    456778899999999988543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.39  E-value=0.0069  Score=50.77  Aligned_cols=99  Identities=11%  Similarity=0.108  Sum_probs=64.6

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDS  142 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~  142 (237)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..   .++.  .+..+.+....   
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~v~~~~---  223 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGAD---IVLPLEEGWAKAVREAT---  223 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEESSTTHHHHHHHHT---
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCc---EEecCchhHHHHHHHHh---
Confidence            3456789999996  5577788888875  5699999999988877765    3532   2222  22323333321   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ....+|+||-....    ..++.+.+.|+++|.+++-..
T Consensus       224 -~~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          224 -GGAGVDMVVDPIGG----PAFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             -TTSCEEEEEESCC------CHHHHHHTEEEEEEEEEC--
T ss_pred             -CCCCceEEEECCch----hHHHHHHHhhcCCCEEEEEEc
Confidence             12479999755443    246778899999999987543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.34  E-value=0.0076  Score=50.25  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|....+.....+..+.+.....    .
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~~----~  212 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREITG----G  212 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHHT----T
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHhC----C
Confidence            446789999994  6677777777764  5699999999887777654    24321111111122222222211    2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..+|++|-....    ..++.+.+.|+++|.++.-.
T Consensus       213 ~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            479999865543    45677889999999988754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.33  E-value=0.004  Score=52.14  Aligned_cols=103  Identities=16%  Similarity=0.050  Sum_probs=64.7

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +...++++||-+|+|  .|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+..+.    
T Consensus       140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~~~~~~~~~~~~~~~~~~----  209 (340)
T 3gms_A          140 LNLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAYVIDTSTAPLYETVMELT----  209 (340)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSEEEETTTSCHHHHHHHHT----
T ss_pred             cccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcEEEeCCcccHHHHHHHHh----
Confidence            345567899999986  566777777764  5699999999998887766    3432111111122333333331    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+||-.....   . .....+.|+++|.++.-..
T Consensus       210 ~~~g~Dvvid~~g~~---~-~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          210 NGIGADAAIDSIGGP---D-GNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             TTSCEEEEEESSCHH---H-HHHHHHTEEEEEEEEECCC
T ss_pred             CCCCCcEEEECCCCh---h-HHHHHHHhcCCCEEEEEee
Confidence            124799997544322   2 2334489999999988654

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.26  E-value=0.0088  Score=50.92  Aligned_cols=103  Identities=12%  Similarity=0.105  Sum_probs=64.3

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc---chHHHHHHhhcCC
Q 026547           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE---ALSVLDQLLKDSE  143 (237)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~~~~  143 (237)
                      ..++++||-+|+|. |..++.+|+... ..+|++++.+++..+.+++    .|.+   .++..+   ..++...+.+. .
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~-~  263 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI-T  263 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH-T
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH-h
Confidence            45678999999653 556777888753 2599999999988777654    4542   223222   22222222111 1


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+||-....   ...++.+.+.|+++|.++.-..
T Consensus       264 ~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          264 HGRGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence            12379999754432   2356778899999999887543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.23  E-value=0.0055  Score=50.94  Aligned_cols=100  Identities=12%  Similarity=0.075  Sum_probs=62.7

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ..++++||-+|  .|.|..+..+++..  +.+|++++.+++..+.+++    .|..   .++..+-.+....+.+. ...
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~-~~~  207 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAW---QVINYREEDLVERLKEI-TGG  207 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH-TTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCC---EEEECCCccHHHHHHHH-hCC
Confidence            44678999999  45566666676654  5699999999888777665    2432   12221111222222111 112


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..+|+++....    ...++.+.+.|+++|.++.-.
T Consensus       208 ~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence            47999986654    245677889999999988754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.17  E-value=0.003  Score=65.88  Aligned_cols=102  Identities=14%  Similarity=0.061  Sum_probs=54.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE----DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ..+|||||.|+|..+..+...+..    ...++..|+++.+.+.+++.++...    ++...-|..+..      ++...
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~~------~~~~~ 1310 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANPA------PGSLG 1310 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCCC------C----
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccccccc------cCCCC
Confidence            459999999999887776666542    2378899999999988888886532    222111211100      00136


Q ss_pred             ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +||+|+....   ..+....++.+.++|+|||.+++...
T Consensus      1311 ~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1311 KADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            7999987643   23456678889999999999988654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.16  E-value=0.026  Score=47.12  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             hhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe---ccchHHHHHHhhcC
Q 026547           67 KLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE---SEALSVLDQLLKDS  142 (237)
Q Consensus        67 ~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~  142 (237)
                      ...++++||-+|+| .|..+..+++..  +.+|++++.+++..+.+++    .|..   .++.   .+..+.+...    
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~d~~~~~~~~~~~~~----  227 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEK----  227 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCC---EEecCCCccHHHHHHHH----
Confidence            55677899999985 366777788765  4699999999988877654    4532   1222   1222222222    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                        .+.+|+||-...   ....++...+.|+++|.++.-..
T Consensus       228 --~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          228 --VGGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             --HSSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             --hCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEecc
Confidence              147999975443   24567888899999999887543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.16  E-value=0.013  Score=49.11  Aligned_cols=96  Identities=11%  Similarity=0.086  Sum_probs=63.0

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHHHhhcCCC
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQLLKDSEN  144 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~~~  144 (237)
                      ++++||-+|+|. |..++.+++..  +. +|++++.+++..+.+++    .|..   .++..   +..+.+..+.    .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~v~~~~----~  233 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK----VGAD---YVINPFEEDVVKEVMDIT----D  233 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH----HTCS---EEECTTTSCHHHHHHHHT----T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCC---EEECCCCcCHHHHHHHHc----C
Confidence            678999999853 56677777765  45 89999999888777664    3532   22222   2222333221    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|+||-...   ....++.+.+.|+++|.++.-.
T Consensus       234 g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          234 GNGVDVFLEFSG---APKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             TSCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEc
Confidence            247999975443   2456788889999999988754

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.025  Score=47.34  Aligned_cols=102  Identities=15%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE-eccchHHHHHHhhcCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI-ESEALSVLDQLLKDSE  143 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~  143 (237)
                      ...++++||.+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|....+.+. ..+..+.+....    
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----  235 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT----  235 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh----
Confidence            4456789999998  5667777777764  5699999999887766554    3532111111 112223333221    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       .+.+|+|+....   ....++.+.+.|+++|.++.-..
T Consensus       236 -~~~~D~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          236 -DGGAHGVINVSV---SEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             -TSCEEEEEECSS---CHHHHHHHTTSEEEEEEEEECCC
T ss_pred             -CCCCCEEEECCC---cHHHHHHHHHHHhcCCEEEEEeC
Confidence             137999976543   24577888899999999887543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.08  E-value=0.1  Score=43.60  Aligned_cols=114  Identities=12%  Similarity=0.171  Sum_probs=73.2

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--------------------CCCcE
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--------------------VDHKI  124 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------------------~~~~v  124 (237)
                      .+...+...||.+|||...-...+....+ +.+++-||. |+.++.-++.+.+.+                    ..++.
T Consensus        92 fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  169 (334)
T 1rjd_A           92 FLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRY  169 (334)
T ss_dssp             HHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSE
T ss_pred             HHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCce
Confidence            33335667999999999998888876544 567777776 888888888877652                    13578


Q ss_pred             EEEeccchHH--HHHHhhcCCCCCceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEE-EeC
Q 026547          125 NFIESEALSV--LDQLLKDSENEGSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAV-YDN  181 (237)
Q Consensus       125 ~~~~~d~~~~--~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv-~~~  181 (237)
                      +++.+|..+.  +..+.+.-.......+++.-+.     ......+++.+.... ++|.++ ++-
T Consensus       170 ~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          170 KLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             EEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             EEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence            9999998763  3332222111245566665543     233456677776666 666654 543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.05  E-value=0.021  Score=47.77  Aligned_cols=101  Identities=20%  Similarity=0.197  Sum_probs=64.9

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHHHhh
Q 026547           66 LKLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQLLK  140 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~  140 (237)
                      +...++++||-+|+|  .|..+..+++... +.+|+++|.+++..+.+++    .|..   .++..   +..+.+..+..
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~  237 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD---YVINASMQDPLAEIRRITE  237 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTT
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCC---EEecCCCccHHHHHHHHhc
Confidence            445677899999987  4556667776642 4689999999988877654    3432   12221   22222333310


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                          .+.+|++|-....   ...++...+.|+++|.++.-.
T Consensus       238 ----~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          238 ----SKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             ----TSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECC
T ss_pred             ----CCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEEC
Confidence                1479999755432   446778889999999988744

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.01  E-value=0.042  Score=46.00  Aligned_cols=93  Identities=16%  Similarity=0.186  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++++||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++    .|.+   .++ .+. +.   +      .
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~-~~---~------~  232 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVK---HFY-TDP-KQ---C------K  232 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCS---EEE-SSG-GG---C------C
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCC---eec-CCH-HH---H------h
Confidence            556788999999865 66777888875  4699999999998887655    4532   222 332 21   1      2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..+|+||-.....   ..++.+.+.|+++|.+++-..
T Consensus       233 ~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          233 EELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECC
Confidence            4899997544333   245678899999999988543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.01  E-value=0.0083  Score=50.24  Aligned_cols=98  Identities=11%  Similarity=0.121  Sum_probs=64.3

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHHHhhcC
Q 026547           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQLLKDS  142 (237)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~  142 (237)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..   .++..   +..+.+....   
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~~---  231 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGAD---ETVNYTHPDWPKEVRRLT---  231 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCS---EEEETTSTTHHHHHHHHT---
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEcCCcccHHHHHHHHh---
Confidence            446789999998  5677788888765  4699999999988877754    3432   12221   2222222221   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ....+|+||-... .   ..++.+.+.|+++|.++.-..
T Consensus       232 -~~~~~d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          232 -GGKGADKVVDHTG-A---LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             -TTTCEEEEEESSC-S---SSHHHHHHHEEEEEEEEESSC
T ss_pred             -CCCCceEEEECCC-H---HHHHHHHHhhccCCEEEEEec
Confidence             1247999986655 2   245677789999999887443

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.99  E-value=0.011  Score=49.64  Aligned_cols=101  Identities=16%  Similarity=0.124  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++++||-+|  .|.|..+..+++..  +.+|++++.+++..+.+++    .|...-+.....+..+.+....     
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~~~~~-----  232 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDFAAVIKAET-----  232 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH-----
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHHHHHHHHHh-----
Confidence            345678999995  34577777788765  5699999999988877765    3532111111122223333321     


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...+|+||-....    ..++.+.+.|+++|.++.-..
T Consensus       233 ~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          233 GQGVDIILDMIGA----AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             SSCEEEEEESCCG----GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEECCCH----HHHHHHHHHhccCCEEEEEEe
Confidence            3679998755443    256777899999999887543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.97  E-value=0.012  Score=49.69  Aligned_cols=97  Identities=15%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             CCCEEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIG-V-FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG-~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ++++||-+| + +.|..++.+|+.+. +.+|++++.+++..+.+++    .|.+   .++... .+....+.+.  ..+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~-~~~~~~v~~~--~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAH---HVIDHS-KPLAAEVAAL--GLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCS---EEECTT-SCHHHHHHTT--CSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCC---EEEeCC-CCHHHHHHHh--cCCC
Confidence            466899998 3 44777888888644 6799999999988777654    4532   222211 1222222211  2368


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|+||-...   ....++.+.+.|+++|.+++-
T Consensus       240 ~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFSTTH---TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEECSC---HHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceEEEECCC---chhhHHHHHHHhcCCCEEEEE
Confidence            998875432   235678888999999999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.95  E-value=0.012  Score=49.30  Aligned_cols=101  Identities=13%  Similarity=0.138  Sum_probs=64.7

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSE  143 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  143 (237)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++.++.+++   +.|....+.... .+..+.+....    
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~~~~~~~~~~~----  222 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEESDLTAALKRCF----  222 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCSCSHHHHHHHC----
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHHHHHHHHHHHh----
Confidence            3456789999997  5677777777764  4699999999887776653   235321111111 12333333331    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       ...+|+++.....    ..++.+.+.|+++|.+++-.
T Consensus       223 -~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          223 -PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             -TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             -CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence             2579999755432    46788889999999998743

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.88  E-value=0.021  Score=47.95  Aligned_cols=100  Identities=12%  Similarity=0.078  Sum_probs=63.9

Q ss_pred             HhhcCC--CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec---cchHHHHH
Q 026547           66 LKLVNA--KKTIEIGV--FTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIES---EALSVLDQ  137 (237)
Q Consensus        66 ~~~~~~--~~vLeiG~--G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~  137 (237)
                      +...++  ++||-+|+  |.|..+..+++..  +. +|++++.+++..+.+++.   .|..   .++..   +..+.+..
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~~~~~~  225 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFD---AAINYKKDNVAEQLRE  225 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCS---EEEETTTSCHHHHHHH
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCc---eEEecCchHHHHHHHH
Confidence            345567  89999997  4566666777664  45 999999998776665542   3532   12221   22222222


Q ss_pred             HhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          138 LLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .     ..+.+|+++-...    ...++.+.+.|+++|.+++-..
T Consensus       226 ~-----~~~~~d~vi~~~G----~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          226 S-----CPAGVDVYFDNVG----GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             H-----CTTCEEEEEESCC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             h-----cCCCCCEEEECCC----HHHHHHHHHHhccCcEEEEECC
Confidence            2     1237999976554    2667888899999999987543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.86  E-value=0.041  Score=45.05  Aligned_cols=93  Identities=17%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             hcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc-hHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA-LSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  144 (237)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..   .++..+. .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            456789999997  5577777888875  4699999999888776654    3532   2222221 2333222      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       ..+|+||- ...    ..++.+.+.|+++|.++.-.
T Consensus       188 -~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          188 -GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             -TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             -cCceEEEE-CCH----HHHHHHHHhhccCCEEEEEe
Confidence             57999986 543    35677889999999988643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.86  E-value=0.014  Score=49.15  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=62.6

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .|..   .++..+-.+....+.+. ..
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~~-~~  236 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKKY-VG  236 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHHH-HC
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHHH-cC
Confidence            3456789999996  5566677777764  5699999999887775543    3532   12222112222222111 01


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|++|-....    ..++...+.|+++|.+++-.
T Consensus       237 ~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          237 EKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            2479999755432    35677789999999988754

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.86  E-value=0.056  Score=45.42  Aligned_cols=101  Identities=7%  Similarity=0.051  Sum_probs=63.8

Q ss_pred             HHhhcCC------CEEEEEcccc-cHHH-HHHH-hhCCCCCE-EEEEeCCch---HHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           65 LLKLVNA------KKTIEIGVFT-GYSL-LLTA-LTIPEDGQ-IMAIDVNRE---TYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        65 l~~~~~~------~~vLeiG~G~-G~~~-~~la-~~~~~~~~-v~~vD~~~~---~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .+...++      ++||-+|+|. |..+ +.+| +..  +.+ |++++.+++   ..+.+++    .|.+ .+.....+.
T Consensus       161 ~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~  233 (357)
T 2b5w_A          161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPV  233 (357)
T ss_dssp             HHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCG
T ss_pred             hcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCH
Confidence            3455667      8999999743 5566 6777 654  455 999999888   7776654    4531 121111223


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+ +..+  .    +.+|+||-...   ....++.+.+.|+++|.++.-..
T Consensus       234 ~~-i~~~--~----gg~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          234 ED-VPDV--Y----EQMDFIYEATG---FPKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             GG-HHHH--S----CCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             HH-HHHh--C----CCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEeC
Confidence            33 3332  1    38999974432   23567888899999999887543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.69  E-value=0.048  Score=39.27  Aligned_cols=93  Identities=9%  Similarity=0.016  Sum_probs=57.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~  148 (237)
                      .+|+-+|+  |..+..+++.+. .+.+|+++|.+++.++.+++    .|    +.++.+|+.+  .+...     .....
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g----~~~i~gd~~~~~~l~~a-----~i~~a   72 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG----VRAVLGNAANEEIMQLA-----HLECA   72 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEESCTTSHHHHHHT-----TGGGC
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC----CCEEECCCCCHHHHHhc-----CcccC
Confidence            57899998  555555554432 25689999999988876654    23    5778888755  33332     13578


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |.|++...........-...+.+.|+..++.
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            9988765433222222334466677776665

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.67  E-value=0.038  Score=46.50  Aligned_cols=100  Identities=20%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch-HHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL-SVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~  143 (237)
                      +...++++||-+|+|. |..++.+++..  +.+|++++.+++..+.+++    .|..   .++.-+.. +....+     
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~-----  240 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY-----  240 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS-----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh-----
Confidence            3556778999999853 66677777764  4689999999998887765    3532   22322222 333332     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       .+.+|+||...... ....++.+.+.|+++|.++.-.
T Consensus       241 -~~~~D~vid~~g~~-~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 -FDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             -CSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECC
T ss_pred             -hcCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEec
Confidence             25799997554330 0123456778999999988744

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.67  E-value=0.035  Score=46.42  Aligned_cols=98  Identities=14%  Similarity=0.092  Sum_probs=63.2

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++++||-+|+  |.|..++.+++..  +.+|+++ .+++..+.+++    .|... +. ...+..+.+....    .
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~----~  213 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT----A  213 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH----T
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh----c
Confidence            3456789999994  4577778888875  5699999 78877766654    35422 22 1222333333322    1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|+||-....    +.++.+.+.|+++|.++.-.
T Consensus       214 ~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          214 GQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             TSCEEEEEESSCT----HHHHHHHHHEEEEEEEEESC
T ss_pred             CCCceEEEECCCc----HHHHHHHHHHhcCCeEEEEc
Confidence            2579998754432    56778889999999988743

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.66  E-value=0.029  Score=46.87  Aligned_cols=95  Identities=9%  Similarity=-0.015  Sum_probs=65.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      ..+++|+.||.|..++.+..+-  -..+.++|+++..++..+.++...     .   ++|+.+.....      ...+|+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~------~~~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKT------IPDHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGG------SCCCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhh------CCCCCE
Confidence            4689999999999999887642  236889999999999888887321     1   67877754322      256999


Q ss_pred             EEEeCCC---------------cC--cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          151 AFVDADK---------------VN--YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       151 i~id~~~---------------~~--~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+.+.+.               .+  +.++++.+ +.++|. ++++.|+.
T Consensus        75 l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i-~~~~P~-~~~~ENV~  122 (327)
T 2c7p_A           75 LCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPK-VVFMENVK  122 (327)
T ss_dssp             EEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCS-EEEEEEEG
T ss_pred             EEECCCCCCcchhcccCCCcchhhHHHHHHHHHH-HhccCc-EEEEeCcH
Confidence            9876321               11  23344433 567884 77788875

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.57  E-value=0.027  Score=47.36  Aligned_cols=102  Identities=9%  Similarity=0.014  Sum_probs=62.9

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++++||-+|+  |.|..+..+++..  +.+|++++.+++.++.+++    .|..   .++..+..+....+.+. ..
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~-~~  228 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAA---AGFNYKKEDFSEATLKF-TK  228 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHH-TT
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCc---EEEecCChHHHHHHHHH-hc
Confidence            3456789999984  5566677777764  5699999999988877643    2432   12222111222222111 11


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...+|++|-.....    .++...+.|+++|.+++-..
T Consensus       229 ~~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          229 GAGVNLILDCIGGS----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             TSCEEEEEESSCGG----GHHHHHHHEEEEEEEEECCC
T ss_pred             CCCceEEEECCCch----HHHHHHHhccCCCEEEEEec
Confidence            24799997655432    45677789999999987543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.29  E-value=0.019  Score=46.28  Aligned_cols=52  Identities=15%  Similarity=0.194  Sum_probs=39.8

Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-----------------CcHHHHHHHHccCCCCeEEEEe
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-----------------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .+++++|+.+.+..+.     .++||+||+|.+-.                 .....++.+.++|++||.|++.
T Consensus         5 ~~l~~gD~~~~l~~l~-----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            5 NKIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CeEEechHHHHHHhcc-----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            4688999999888762     46899999996521                 1235667778999999999886

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.18  E-value=0.023  Score=47.29  Aligned_cols=54  Identities=19%  Similarity=0.236  Sum_probs=41.2

Q ss_pred             CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-----------------CcHHHHHHHHccCCCCeEEEEe
Q 026547          122 HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-----------------NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       122 ~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +...++++|+.+.+..+.     .++||+|++|.+-.                 .....++.+.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~-----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC-----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            457899999998876552     47899999996521                 1346677788999999998874

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.17  E-value=0.054  Score=44.53  Aligned_cols=76  Identities=13%  Similarity=0.095  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-IMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ....+++|+.||.|..++.+..+-- ... |.++|+++...+..+.++      +...++.+|+.++......+   .+.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~---~~~   83 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQE---WGP   83 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHH---TCC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcc---cCC
Confidence            3456899999999999988876421 222 699999999887766664      12467889988765432111   257


Q ss_pred             eeEEEEe
Q 026547          148 FDYAFVD  154 (237)
Q Consensus       148 ~D~i~id  154 (237)
                      +|+++..
T Consensus        84 ~Dll~gg   90 (295)
T 2qrv_A           84 FDLVIGG   90 (295)
T ss_dssp             CSEEEEC
T ss_pred             cCEEEec
Confidence            9999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.15  E-value=0.18  Score=35.59  Aligned_cols=94  Identities=14%  Similarity=0.108  Sum_probs=54.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  147 (237)
                      ..+|+-+|+  |..+..+++.+. .+.+|+.+|.+++.++..++.   .+    +.++.+|..+  .+...     ....
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~-----~~~~   69 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDA-----GIED   69 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHT-----TTTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHc-----Cccc
Confidence            357888887  666666655442 256899999998766544432   23    4566776543  22211     1357


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      .|+|++..........+....+.+.++-+++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           70 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            8999887544333333444456677765444

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.12  E-value=0.015  Score=48.67  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe---ccchHHHHHHhhcCCC
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIE---SEALSVLDQLLKDSEN  144 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~~~~  144 (237)
                      ++++||-+|+|. |..++.+|+..  +. +|++++.+++..+.+++. .     +  .++.   .+..+.+..+.     
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-----  228 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-----  228 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-----
Confidence            678999999843 56677778775  45 899999998877766553 1     1  1222   12223333221     


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|+||-...   ....++...+.|+++|.++.-.
T Consensus       229 ~~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          229 GSGVEVLLEFSG---NEAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             SSCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            257999975443   2456788889999999988754

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.09  E-value=0.064  Score=44.84  Aligned_cols=94  Identities=18%  Similarity=0.165  Sum_probs=62.1

Q ss_pred             CCCEEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhcCCCC
Q 026547           70 NAKKTIEIG-V-FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKDSENE  145 (237)
Q Consensus        70 ~~~~vLeiG-~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~~~  145 (237)
                      ++++||-+| + +.|..++.+++..  +++|++++.+++..+.+++    .|.+   .++.  .+..+.+...     ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~-----~~  215 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGAD---IVLNHKESLLNQFKTQ-----GI  215 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCS---EEECTTSCHHHHHHHH-----TC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCc---EEEECCccHHHHHHHh-----CC
Confidence            678999994 3 3466777788865  4699999999988877766    3532   1221  2222333332     13


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+|+||-...   ....++.+.+.|+++|.++.-
T Consensus       216 ~g~Dvv~d~~g---~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          216 ELVDYVFCTFN---TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             CCEEEEEESSC---HHHHHHHHHHHEEEEEEEEES
T ss_pred             CCccEEEECCC---chHHHHHHHHHhccCCEEEEE
Confidence            67999875432   245678888999999999753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.02  E-value=0.052  Score=45.40  Aligned_cols=100  Identities=13%  Similarity=0.112  Sum_probs=65.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      -+++|+.||.|..++-+..+--....|.++|+++...+..+.++.      ...++.+|+.+.......    ...+|++
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~----~~~~D~l   73 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIK----KWNVDTI   73 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHH----HTTCCEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhc----cCCCCEE
Confidence            479999999999998887652111358899999998888777762      234677888775443211    1368999


Q ss_pred             EEeCCC-----------------cCcHHHHHHHHccCC-CCeEEEEeCcC
Q 026547          152 FVDADK-----------------VNYWNYHERLMKLLK-VGGIAVYDNTL  183 (237)
Q Consensus       152 ~id~~~-----------------~~~~~~~~~~~~~L~-~gG~lv~~~~~  183 (237)
                      +...+.                 ..+.++++ +.+.++ | -++++.|+.
T Consensus        74 ~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r-~i~~~~~P-~~~vlENV~  121 (333)
T 4h0n_A           74 LMSPPCQPFTRNGKYLDDNDPRTNSFLYLIG-ILDQLDNV-DYILMENVK  121 (333)
T ss_dssp             EECCCCCCSEETTEECCTTCTTSCCHHHHHH-HGGGCTTC-CEEEEEECT
T ss_pred             EecCCCcchhhhhhccCCcCcccccHHHHHH-HHHHhcCC-CEEEEecch
Confidence            854221                 11233433 335665 7 577788875

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.01  E-value=0.035  Score=46.16  Aligned_cols=54  Identities=13%  Similarity=0.112  Sum_probs=40.8

Q ss_pred             CcEEEE-eccchHHHHHHhhcCCCCCceeEEEEeCCCc----------C----cHHHHHHHHccCCCCeEEEEe
Q 026547          122 HKINFI-ESEALSVLDQLLKDSENEGSFDYAFVDADKV----------N----YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       122 ~~v~~~-~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~----------~----~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+++ ++|+.+.+..+.     .++||+||+|.+-.          .    ....+..+.++|++||.|++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~-----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCc-----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            346788 999999887652     46899999997532          1    235567778999999999885

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.00  E-value=0.049  Score=47.45  Aligned_cols=102  Identities=13%  Similarity=0.081  Sum_probs=64.6

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc-------------
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA-------------  131 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-------------  131 (237)
                      ...++++||-+|+  |.|..++.+|+..  +.++++++.+++.++.+++    .|...-+.....|.             
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence            3456789999997  4567777888875  5799999988888877755    35421111111111             


Q ss_pred             ----hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          132 ----LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       132 ----~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                          .+.+..+.    ....+|+||-....    ..++.+.+.|++||.+++-..
T Consensus       299 ~~~~~~~i~~~t----~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G~  345 (456)
T 3krt_A          299 WKRFGKRIRELT----GGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCAS  345 (456)
T ss_dssp             HHHHHHHHHHHH----TSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESCC
T ss_pred             HHHHHHHHHHHh----CCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEec
Confidence                02222221    12589998754332    567888899999999987543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=94.90  E-value=0.21  Score=42.10  Aligned_cols=98  Identities=20%  Similarity=0.193  Sum_probs=60.7

Q ss_pred             hhc-CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLV-NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~-~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ... ++++||-+|+|. |..++.+++..  +.+|++++.+++..+.+++   +.|..   .++...-.+.+...      
T Consensus       183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~------  248 (366)
T 1yqd_A          183 GLDEPGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAA------  248 (366)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHT------
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHh------
Confidence            344 678999999753 45566777764  4699999999887766553   34532   22222222333332      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .+.+|+||-......   .++...+.|+++|.++.-.
T Consensus       249 ~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          249 AGTLDGIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             TTCEEEEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             hCCCCEEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            257999976544332   2345667889999988744

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.90  E-value=0.15  Score=43.10  Aligned_cols=98  Identities=10%  Similarity=0.078  Sum_probs=62.4

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           69 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        69 ~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      .++++||-+|+  +.|..++.+|+..  +.+|+++. +++..+.+++    .|.+.-+.....+..+.+..+.     .+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-----~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT-----KN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT-----TT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc-----cC
Confidence            56789999998  3677888888875  46888885 7777665544    5642212222223333333331     24


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccC-CCCeEEEEeC
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLL-KVGGIAVYDN  181 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L-~~gG~lv~~~  181 (237)
                      .+|+||-...   ....++.+.+.| ++||.++.-.
T Consensus       231 ~~d~v~d~~g---~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          231 NLRYALDCIT---NVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCCEEEESSC---SHHHHHHHHHHSCTTCEEEEESS
T ss_pred             CccEEEECCC---chHHHHHHHHHhhcCCCEEEEEe
Confidence            5999974432   245677788888 6999988754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.57  E-value=0.041  Score=45.16  Aligned_cols=54  Identities=19%  Similarity=0.135  Sum_probs=38.7

Q ss_pred             CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc---C--------------------cHHHHHHHHccCCCCeEEE
Q 026547          122 HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV---N--------------------YWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       122 ~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~---~--------------------~~~~~~~~~~~L~~gG~lv  178 (237)
                      .+++++++|+.+.++.+     ..++||+|+.|.+-.   .                    +...++.+.++|+|||.++
T Consensus        20 ~~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF-----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             -CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhC-----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            35789999999977654     247899999985421   0                    1235567779999999987


Q ss_pred             Ee
Q 026547          179 YD  180 (237)
Q Consensus       179 ~~  180 (237)
                      +.
T Consensus        95 i~   96 (297)
T 2zig_A           95 IV   96 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.54  E-value=0.087  Score=43.77  Aligned_cols=62  Identities=6%  Similarity=-0.052  Sum_probs=47.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ..++..|||-.||+|..+....+.   +-+.+++|+++...+.++++++..+..  ...+..|+.+.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i  311 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRI  311 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Confidence            356789999999999987776653   459999999999999999998776642  33444454443

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.54  E-value=0.15  Score=42.68  Aligned_cols=99  Identities=18%  Similarity=0.221  Sum_probs=61.6

Q ss_pred             hhc-CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLV-NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~-~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ... ++++||-+|+|. |..++.+++..  +.+|++++.+++..+.+++   +.|.+.   ++..+-.+.+...      
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~------  241 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSEL------  241 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHS------
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHh------
Confidence            344 678999999753 45566777764  4699999999887766552   345432   2222212333322      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+.+|+||-......   .++...+.|+++|.++.-..
T Consensus       242 ~~g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          242 ADSLDYVIDTVPVHH---ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             TTTEEEEEECCCSCC---CSHHHHTTEEEEEEEEECSC
T ss_pred             cCCCCEEEECCCChH---HHHHHHHHhccCCEEEEeCC
Confidence            257999975544322   24556789999999987543

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=94.45  E-value=0.13  Score=43.24  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=60.1

Q ss_pred             hhcCC-CEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe---ccchHHHHHHhh
Q 026547           67 KLVNA-KKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE---SEALSVLDQLLK  140 (237)
Q Consensus        67 ~~~~~-~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~  140 (237)
                      ...++ .+||-+|+  +.|..++.+|+..  +.+++++..+++..+..++.+++.|.+.-+....   .+..+.+..+..
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhh
Confidence            34466 89999986  4566777888875  5688888766554222223344556431111111   222223322210


Q ss_pred             -cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          141 -DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       141 -~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       .   ...+|+||-....   .... ...+.|+++|.++.-..
T Consensus       241 ~~---~~g~Dvvid~~G~---~~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          241 QS---GGEAKLALNCVGG---KSST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             HH---TCCEEEEEESSCH---HHHH-HHHHTSCTTCEEEECCC
T ss_pred             cc---CCCceEEEECCCc---hhHH-HHHHHhccCCEEEEecC
Confidence             1   2579999744332   2333 56799999999987543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.41  E-value=0.12  Score=43.08  Aligned_cols=75  Identities=12%  Similarity=-0.054  Sum_probs=51.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEE-EEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQI-MAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +-+++|+.||.|..++-+..+--....| .++|+++...+..+.++..      . ++.+|+.+.......    ...+|
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~i~----~~~~D   78 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQIE----SLNCN   78 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHHHH----HTCCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHHhc----cCCCC
Confidence            4589999999999999887642101356 7999999999888888721      1 567787665432211    13689


Q ss_pred             EEEEeCC
Q 026547          150 YAFVDAD  156 (237)
Q Consensus       150 ~i~id~~  156 (237)
                      +++...+
T Consensus        79 il~ggpP   85 (327)
T 3qv2_A           79 TWFMSPP   85 (327)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9986543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.39  E-value=0.12  Score=43.02  Aligned_cols=68  Identities=13%  Similarity=0.143  Sum_probs=45.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc---hHHHHHHHHHHhcCCCC-cEEE-EeccchHHHHHH
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNR---ETYEIGLPVIKKAGVDH-KINF-IESEALSVLDQL  138 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~---~~~~~a~~~~~~~~~~~-~v~~-~~~d~~~~~~~~  138 (237)
                      ..++..|||--||+|..+......   +-+.+++|+++   ..++.+++++++.+.-+ +..+ +.....+++..+
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~  312 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDGLIDKARSYEIVEGAANFGAAL  312 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC---------CCEEEEECGGGTHHHH
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHccCCcccceeeecchHHHHHHHH
Confidence            356789999999999988877664   45899999999   99999999988766321 1111 334455555544

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.37  E-value=0.19  Score=35.86  Aligned_cols=71  Identities=13%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~  147 (237)
                      .++|+-+|+  |..+..+++.+. .+.+|+++|.+++.++.+++    .+    +.++.+|..+.  +...     ....
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~~l~~~-----~~~~   70 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDESFYRSL-----DLEG   70 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHHHHHHS-----CCTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHHHHHhC-----Cccc
Confidence            457999998  556666655442 25689999999987766554    22    57788887653  3322     1357


Q ss_pred             eeEEEEeCC
Q 026547          148 FDYAFVDAD  156 (237)
Q Consensus       148 ~D~i~id~~  156 (237)
                      .|.|++..+
T Consensus        71 ~d~vi~~~~   79 (141)
T 3llv_A           71 VSAVLITGS   79 (141)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEecC
Confidence            899987654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=94.28  E-value=0.079  Score=44.33  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=56.7

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++++||-+|+  +.|..+..+++... ..+|++++ +++..+.++     .|...-+. ...+..+.+..+     .
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~-----~  205 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRI-----S  205 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHH-----C
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHh-----c
Confidence            4456789999998  34667777887654 56899988 555444433     35321122 122233333333     1


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+.+|+||-.....    .++.+.+.|+++|.+++-..
T Consensus       206 ~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G~  239 (349)
T 4a27_A          206 AEGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYGS  239 (349)
T ss_dssp             TTCEEEEEEECC-----------CTTEEEEEEEEEEC-
T ss_pred             CCCceEEEECCCch----hHHHHHHHhhcCCEEEEECC
Confidence            36899997554322    23667899999999987543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.28  E-value=0.12  Score=44.77  Aligned_cols=102  Identities=14%  Similarity=0.045  Sum_probs=64.3

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc------------
Q 026547           66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA------------  131 (237)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~------------  131 (237)
                      +...++++||-+|+  |.|..++.+++..  +++|++++.+++..+.+++    .|...-+.....+.            
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~  289 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVV  289 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccc
Confidence            34456789999996  4566777788764  5799999988887776643    45432121111111            


Q ss_pred             ------hHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          132 ------LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       132 ------~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                            .+.+....     ...+|+||-....    ..++...+.|++||.++.-..
T Consensus       290 ~~~~~~~~~v~~~~-----g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          290 ETGRKLAKLVVEKA-----GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHHH-----SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESCC
T ss_pred             hhhhHHHHHHHHHh-----CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEec
Confidence                  11222221     2579999754432    467788899999999987543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.27  E-value=0.26  Score=41.81  Aligned_cols=96  Identities=10%  Similarity=0.013  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+.+||.++.+.|..+++++.+     .++.+.-+--.....+.|++.+++.+ .+++...  .+.   +      ...|
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~---~------~~~~  101 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TAD---Y------PQQP  101 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSC---C------CSSC
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccc---c------ccCC
Confidence            4467999999999999998753     34555435555567788898888864 3665432  111   1      4789


Q ss_pred             eEEEEeCCCcC--cHHHHHHHHccCCCCeEEEEeC
Q 026547          149 DYAFVDADKVN--YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       149 D~i~id~~~~~--~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |+|++..++..  ....+..+...|++|+.+++..
T Consensus       102 ~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A          102 GVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             SEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            99998876543  4556788889999999887643

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.09  E-value=0.057  Score=44.69  Aligned_cols=92  Identities=9%  Similarity=0.046  Sum_probs=58.2

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec-cc-hHHHHHHhhcCCCCCce
Q 026547           73 KTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES-EA-LSVLDQLLKDSENEGSF  148 (237)
Q Consensus        73 ~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~-d~-~~~~~~~~~~~~~~~~~  148 (237)
                      +||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .|.+   .++.. +. .+....+     ....+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~-----~~~~~  217 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAK---EVLAREDVMAERIRPL-----DKQRW  217 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCS---EEEECC---------C-----CSCCE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCc---EEEecCCcHHHHHHHh-----cCCcc
Confidence            7999997  5677788888875  4689999999888777654    4532   12211 11 1111211     12479


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+||-.....    .++...+.|+++|.++.-..
T Consensus       218 d~vid~~g~~----~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          218 AAAVDPVGGR----TLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             EEEEECSTTT----THHHHHHTEEEEEEEEECSC
T ss_pred             cEEEECCcHH----HHHHHHHhhccCCEEEEEee
Confidence            9987544332    46777899999999987543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.05  E-value=0.35  Score=35.08  Aligned_cols=97  Identities=11%  Similarity=0.017  Sum_probs=57.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc-hHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR-ETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEG  146 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  146 (237)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.++ +..+...+..     ...+.++.+|+.+  .+...     ...
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a-----~i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA-----GID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH-----TTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc-----Chh
Confidence            457888886  777777665552 256899999974 5444444332     1237888998764  33322     136


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..|.|++...............+.+.+...+++
T Consensus        71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           71 RCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789998765443333334444456656555554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.03  E-value=0.21  Score=37.36  Aligned_cols=95  Identities=11%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-C-CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-E-DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG  146 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  146 (237)
                      ..+|+-+|+  |..+..+++.+. . +.+|+++|.+++..+.+++    .|    +.++.+|..+.  +...    ....
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~----~~~~  104 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERI----LDTG  104 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTB----CSCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhc----cCCC
Confidence            457999987  666665555442 2 4589999999987765443    33    45667776442  2211    0135


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+|+|++...........-...+.+.+++.+++
T Consensus       105 ~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          105 HVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789998754432222222223355666667665

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.99  E-value=0.27  Score=38.93  Aligned_cols=81  Identities=12%  Similarity=0.102  Sum_probs=53.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHH----hhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP--EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQL----LKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~----~~~  141 (237)
                      ++++||-.| |+|..+..+++.+.  .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+    .+.
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456788777 56667777666553  26799999999887776666666554  3588888887542  2221    111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+|+..+.
T Consensus        80 ---~g~id~li~~Ag   91 (276)
T 1wma_A           80 ---YGGLDVLVNNAG   91 (276)
T ss_dssp             ---HSSEEEEEECCC
T ss_pred             ---cCCCCEEEECCc
Confidence               248999987653

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.94  E-value=1.2  Score=35.38  Aligned_cols=80  Identities=10%  Similarity=0.134  Sum_probs=54.1

Q ss_pred             cCCCEEEEEcc----cccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHH
Q 026547           69 VNAKKTIEIGV----FTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQ  137 (237)
Q Consensus        69 ~~~~~vLeiG~----G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~  137 (237)
                      .+++.+|-.|.    |.|. .+..|++   .+.+|+.++.+++..+.+.+.+++.+- .++.++++|..+      .+..
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~---~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQ---LGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHH
Confidence            36789999995    3444 2334554   378999999999988888888877653 357888888643      2222


Q ss_pred             HhhcCCCCCceeEEEEeC
Q 026547          138 LLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~  155 (237)
                      ..++   .+++|.++.+.
T Consensus        80 ~~~~---~G~iD~lvnnA   94 (256)
T 4fs3_A           80 IGKD---VGNIDGVYHSI   94 (256)
T ss_dssp             HHHH---HCCCSEEEECC
T ss_pred             HHHH---hCCCCEEEecc
Confidence            2222   37899988764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.72  E-value=0.59  Score=36.43  Aligned_cols=95  Identities=11%  Similarity=0.042  Sum_probs=59.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  147 (237)
                      ..++|+-+|+  |..+..+++.+...+.|+.+|.+++.++.++     .+    +.++.+|+.+  .+...     ....
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~~----~~~i~gd~~~~~~l~~a-----~i~~   71 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----SG----ANFVHGDPTRVSDLEKA-----NVRG   71 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----TT----CEEEESCTTCHHHHHHT-----TCTT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----cC----CeEEEcCCCCHHHHHhc-----Ccch
Confidence            4568999987  7888888887754333999999988765443     22    6789999864  33222     1367


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .|.|++...............+.+.++..+++.
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            899887654332222333444667777555553

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.61  E-value=1.1  Score=35.44  Aligned_cols=80  Identities=4%  Similarity=-0.043  Sum_probs=50.9

Q ss_pred             CCCEEEEEccc--ccH---HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHH
Q 026547           70 NAKKTIEIGVF--TGY---SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQL  138 (237)
Q Consensus        70 ~~~~vLeiG~G--~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~  138 (237)
                      +++++|-.|++  .|.   .+..|++   .+.+|+.++.+....+.+.+..+..+. .++.++.+|..+.      +...
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE---AGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHH
Confidence            56789999965  333   2334444   367999999988777777776665543 3688888886542      2222


Q ss_pred             hhcCCCCCceeEEEEeCC
Q 026547          139 LKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~  156 (237)
                      .+.   .+.+|.++..+.
T Consensus        82 ~~~---~g~id~li~~Ag   96 (266)
T 3oig_A           82 KEQ---VGVIHGIAHCIA   96 (266)
T ss_dssp             HHH---HSCCCEEEECCC
T ss_pred             HHH---hCCeeEEEEccc
Confidence            221   257899887653

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.59  E-value=0.24  Score=41.78  Aligned_cols=98  Identities=18%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             hcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           68 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ..++++||-+|  .|.|..++.+++..  +.+|++++ +++..+.++    +.|.+   .++..+..++...+.+    .
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~---~v~~~~~~~~~~~~~~----~  246 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGAD---DVIDYKSGSVEEQLKS----L  246 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCS---EEEETTSSCHHHHHHT----S
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCC---EEEECCchHHHHHHhh----c
Confidence            45678999999  34567777888875  46899998 666655553    44642   2222222233333321    2


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..+|+||-.....  ...++...+.|+++|.++.-.
T Consensus       247 ~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          247 KPFDFILDNVGGS--TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             CCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEESC
T ss_pred             CCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEeC
Confidence            5799997544322  134566778999999988743

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.58  E-value=0.37  Score=40.14  Aligned_cols=97  Identities=9%  Similarity=-0.021  Sum_probs=57.3

Q ss_pred             CEEEEE-cc-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           72 KKTIEI-GV-FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        72 ~~vLei-G~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +.||-. |+ |.|..+..+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+..+..    ...+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CCCCc
Confidence            566654 32 2355666677764  5699999999998887764    35321111111223333333211    14799


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +||-....    ..++.+.+.|+++|.++.-..
T Consensus       236 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG----PLASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH----HHHHHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC----hhHHHHHhhhcCCCEEEEEec
Confidence            98754332    334777899999999988554

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.51  E-value=0.065  Score=44.22  Aligned_cols=92  Identities=11%  Similarity=0.102  Sum_probs=60.8

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           73 KTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        73 ~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +||-+|+  +.|..++.+++..  +.+|++++.+++..+.+++    .|.+   .++.....+....+     ..+.+|+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~-----~~~~~d~  214 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGAN---RILSRDEFAESRPL-----EKQLWAG  214 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCS---EEEEGGGSSCCCSS-----CCCCEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCC---EEEecCCHHHHHhh-----cCCCccE
Confidence            4999996  5677888888875  4699999999998887765    3532   22221111111111     2357998


Q ss_pred             EEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          151 AFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       151 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +|-...    .+.++.+.+.|+++|.++.-..
T Consensus       215 v~d~~g----~~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          215 AIDTVG----DKVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             EEESSC----HHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEECCC----cHHHHHHHHHHhcCCEEEEEec
Confidence            764332    2378888899999999987543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=93.50  E-value=0.65  Score=37.55  Aligned_cols=80  Identities=20%  Similarity=0.337  Sum_probs=51.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHh
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLL  139 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~  139 (237)
                      ...+++.+|-.|.+.|- +..+++.+ ..+++|+.++.+++.++.+.+.+   +  .++..+++|..+      ......
T Consensus        25 ~rL~gKvalVTGas~GI-G~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~   98 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGI-GLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVK   98 (273)
T ss_dssp             CTTTTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhCCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHH
Confidence            34678899999987764 33333333 23789999999998776654443   4  356777887643      222222


Q ss_pred             hcCCCCCceeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDA  155 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~  155 (237)
                      ++   .+++|+++.++
T Consensus        99 ~~---~G~iDiLVNNA  111 (273)
T 4fgs_A           99 AE---AGRIDVLFVNA  111 (273)
T ss_dssp             HH---HSCEEEEEECC
T ss_pred             HH---cCCCCEEEECC
Confidence            22   37899998764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.47  E-value=0.29  Score=41.21  Aligned_cols=98  Identities=13%  Similarity=0.118  Sum_probs=57.5

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++++|+-+|+|. |..+..+++.+  +.+|+.+|.+++.++.+++....     .+..+..+..+....+       ..+
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~  231 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AEA  231 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cCC
Confidence            468999999842 33344555554  45999999999888877765422     2333333322332322       468


Q ss_pred             eEEEEeCCCcC--cHH-HHHHHHccCCCCeEEEEeC
Q 026547          149 DYAFVDADKVN--YWN-YHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       149 D~i~id~~~~~--~~~-~~~~~~~~L~~gG~lv~~~  181 (237)
                      |+|+.......  .+. ..+...+.+++||+++--.
T Consensus       232 DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          232 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             CEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            99975433221  011 1345668889999776543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.41  E-value=0.25  Score=41.40  Aligned_cols=100  Identities=13%  Similarity=0.095  Sum_probs=60.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc--chHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE--ALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~  142 (237)
                      +...++++||-+|+|. |..++.+|+... +.+|+++|.+++..+.+++    .|.+   .++.-.  ..+.+..+.   
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~v~~~~---  250 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD---HVVDARRDPVKQVMELT---  250 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS---EEEETTSCHHHHHHHHT---
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCC---EEEeccchHHHHHHHHh---
Confidence            4556778999999842 335566777652 4699999999888777654    4532   222221  122333331   


Q ss_pred             CCCCceeEEEEeCCCcCcHH--HHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWN--YHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~--~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ....+|+||-....   ..  .++...+.  ++|.++.-..
T Consensus       251 -~g~g~Dvvid~~G~---~~~~~~~~~~~~--~~G~~v~~g~  286 (359)
T 1h2b_A          251 -RGRGVNVAMDFVGS---QATVDYTPYLLG--RMGRLIIVGY  286 (359)
T ss_dssp             -TTCCEEEEEESSCC---HHHHHHGGGGEE--EEEEEEECCC
T ss_pred             -CCCCCcEEEECCCC---chHHHHHHHhhc--CCCEEEEEeC
Confidence             12379999744332   33  56667677  8998887543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.29  E-value=0.28  Score=43.12  Aligned_cols=59  Identities=7%  Similarity=-0.119  Sum_probs=43.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      -+++|+.||.|..++-+..+-  ...|.++|+++...+..+.++   +..+...++.+|+.++.
T Consensus        89 ~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~---~~~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANH---YCDPATHHFNEDIRDIT  147 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHS---CCCTTTCEEESCTHHHH
T ss_pred             ceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhc---ccCCCcceeccchhhhh
Confidence            489999999999998887641  235899999998887776665   22223456788887764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=93.19  E-value=0.27  Score=40.64  Aligned_cols=88  Identities=14%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC--EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH-HHHHHhhcCCCCCc
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-DG--QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS-VLDQLLKDSENEGS  147 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~~~~  147 (237)
                      .+|.-||+|  ..+..++..+.. +.  +|+++|.+++.++.+++    .|...  . ...+..+ .          ...
T Consensus        34 ~kI~IIG~G--~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~--~-~~~~~~~~~----------~~~   94 (314)
T 3ggo_A           34 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID--E-GTTSIAKVE----------DFS   94 (314)
T ss_dssp             SEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS--E-EESCTTGGG----------GGC
T ss_pred             CEEEEEeeC--HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc--h-hcCCHHHHh----------hcc
Confidence            689999975  444444433311 33  89999999987766543    34321  1 2233322 2          156


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      .|+|++........+.++.+.+.+++|.+++
T Consensus        95 aDvVilavp~~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A           95 PDFVMLSSPVRTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             CCEEEEeCCHHHHHHHHHHHhhccCCCcEEE
Confidence            7999998877777888888888898876554

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=93.14  E-value=1  Score=36.47  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      .++++|-.|.+. ...+..+++.+ ..+.+|+.++.++...+.+.+..+..+   ++.++.+|..+.      +....+.
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            568899999753 12333333322 136799999999877666666665554   367788886542      2222211


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+.+|+++..+.
T Consensus       106 ---~g~iD~lVnnAG  117 (296)
T 3k31_A          106 ---WGSLDFVVHAVA  117 (296)
T ss_dssp             ---HSCCSEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               258999987754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.09  E-value=0.31  Score=41.34  Aligned_cols=99  Identities=17%  Similarity=0.106  Sum_probs=56.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++++|+-+|+|. |..+..+++.+  +.+|+++|.+++.++.+++.+   |.  .+.....+..+....+       ..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l-------~~  231 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAV-------KR  231 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHH-------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHH-------cC
Confidence            3578999999843 22333444443  459999999998777665533   32  1222222222222222       46


Q ss_pred             eeEEEEeCCCcC--cHH-HHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDADKVN--YWN-YHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~~~~--~~~-~~~~~~~~L~~gG~lv~~~  181 (237)
                      .|+|+.......  .+. +.+...+.+++||+|+--.
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            799987432221  111 1355668899999887543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.99  E-value=0.27  Score=35.85  Aligned_cols=100  Identities=11%  Similarity=-0.006  Sum_probs=55.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...+.+|+-+|+  |..+..+++.+. .+.+|+.+|.+++.++.++.   ..|    +.++.+|..+. ..+.+.  ...
T Consensus        16 ~~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~g----~~~~~~d~~~~-~~l~~~--~~~   83 (155)
T 2g1u_A           16 KQKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EFS----GFTVVGDAAEF-ETLKEC--GME   83 (155)
T ss_dssp             -CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TCC----SEEEESCTTSH-HHHHTT--TGG
T ss_pred             ccCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cCC----CcEEEecCCCH-HHHHHc--Ccc
Confidence            345679999997  565555554432 24689999999877654331   112    45666765432 111110  125


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+|+|++.............+.+.+.+...++.
T Consensus        84 ~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           84 KADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             GCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             cCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            689998876543333333334444455555554

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.95  E-value=1.2  Score=35.64  Aligned_cols=106  Identities=19%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC------------chHHHHHHHHHHhcCCCCcEEEEeccchHH-
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVN------------RETYEIGLPVIKKAGVDHKINFIESEALSV-  134 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  134 (237)
                      ..+++||-.|++.| .+..+++.+. .+.+|+.+|.+            .+.++.+...+...+  .++.++.+|..+. 
T Consensus         8 l~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            8 VQDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            35678999997654 4444444331 36799999987            555566655565554  4688899887542 


Q ss_pred             -----HHHHhhcCCCCCceeEEEEeCCCcC---------c-----------HHHHHHHHccCCCCeEEEEe
Q 026547          135 -----LDQLLKDSENEGSFDYAFVDADKVN---------Y-----------WNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       135 -----~~~~~~~~~~~~~~D~i~id~~~~~---------~-----------~~~~~~~~~~L~~gG~lv~~  180 (237)
                           +....+.   .+++|+++..+....         +           ....+.+.+.++++|.||.-
T Consensus        85 ~v~~~~~~~~~~---~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           85 AVSRELANAVAE---FGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHH---HSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHH---cCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence                 2222211   258999987654211         1           12334455677777876653

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.91  E-value=0.1  Score=42.86  Aligned_cols=89  Identities=13%  Similarity=0.110  Sum_probs=57.7

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++++||-+|+|. |..++.+|+..  +.+|++++ +++..+.+++    .|.   -.++. |    ...+      .
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa---~~v~~-d----~~~v------~  197 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGV---RHLYR-E----PSQV------T  197 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTE---EEEES-S----GGGC------C
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCC---CEEEc-C----HHHh------C
Confidence            345678999999953 66777888875  46999999 8888887765    353   22232 3    1111      3


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..+|+||-.....    .+..+.+.|+++|.++.-
T Consensus       198 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          198 QKYFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             SCEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             CCccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence            6899987433221    235677999999998875

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.89  E-value=0.35  Score=40.86  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=55.6

Q ss_pred             cCCCEEEEEcccccHHHHH---HHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLL---TALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~---la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      .++++|+-+|+  |..+..   +++..  +.+|+++|.+++..+.+++.+   +.  .+.....+..+....+       
T Consensus       164 l~~~~V~ViGa--G~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~-------  227 (369)
T 2eez_A          164 VAPASVVILGG--GTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSV-------  227 (369)
T ss_dssp             BCCCEEEEECC--SHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHH-------
T ss_pred             CCCCEEEEECC--CHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHH-------
Confidence            35689999998  444443   44433  569999999988776655432   32  2333222322222222       


Q ss_pred             CceeEEEEeCCCcC--cHH-HHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVN--YWN-YHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~--~~~-~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...|+|+.......  .+. +.+...+.+++||+|+.-..
T Consensus       228 ~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          228 QHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             HHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred             hCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence            46899976544221  111 24566788899998775443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.89  E-value=0.77  Score=31.05  Aligned_cols=81  Identities=12%  Similarity=0.013  Sum_probs=49.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CC-CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-ED-GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEG  146 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  146 (237)
                      .++|+-+|+  |..+..+++.+. .+ .+|+.+|.+++..+...    .    ..+.++.+|..+  .+...      ..
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH------Hc
Confidence            458999998  666665554442 23 58999999987765544    2    235667777654  22222      35


Q ss_pred             ceeEEEEeCCCcCcHHHHHHH
Q 026547          147 SFDYAFVDADKVNYWNYHERL  167 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~  167 (237)
                      .+|+|+...+......+.+.+
T Consensus        69 ~~d~vi~~~~~~~~~~~~~~~   89 (118)
T 3ic5_A           69 GFDAVISAAPFFLTPIIAKAA   89 (118)
T ss_dssp             TCSEEEECSCGGGHHHHHHHH
T ss_pred             CCCEEEECCCchhhHHHHHHH
Confidence            789998776544434444444

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=92.83  E-value=0.35  Score=40.60  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=58.7

Q ss_pred             CCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---hHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           71 AKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNR---ETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        71 ~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      +++||-+|+|. |..+..+++..  +.+|++++.++   +..+.+++    .|.. .+.  ..+..+.+...      ..
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~------~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDS------VG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHH------HC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHh------CC
Confidence            78999999832 44555666654  46999999988   76666554    3531 121  11222222221      15


Q ss_pred             ceeEEEEeCCCcCcHHHH-HHHHccCCCCeEEEEeCc
Q 026547          147 SFDYAFVDADKVNYWNYH-ERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~-~~~~~~L~~gG~lv~~~~  182 (237)
                      .+|+||-.....   ..+ +.+.+.|+++|.++.-..
T Consensus       246 ~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          246 KFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CEEEEEECCCCC---THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEec
Confidence            799997655432   245 778899999999887544

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.81  E-value=1.7  Score=34.70  Aligned_cols=83  Identities=11%  Similarity=0.025  Sum_probs=54.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHH----HhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQ----LLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~----~~~~~  142 (237)
                      ++++||-.|+. |..+..+++.+. .+.+|+.++.+++.++...+.++..+...++.++.+|..+.  +..    ..+. 
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-  108 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ-  108 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh-
Confidence            56789999854 555555554442 36799999999888777777676666555788888887542  111    1111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|+++..+.
T Consensus       109 --~g~iD~vi~~Ag  120 (279)
T 1xg5_A          109 --HSGVDICINNAG  120 (279)
T ss_dssp             --HCCCSEEEECCC
T ss_pred             --CCCCCEEEECCC
Confidence              257999987653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.80  E-value=0.47  Score=36.59  Aligned_cols=93  Identities=15%  Similarity=0.016  Sum_probs=57.5

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCcee
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSFD  149 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~D  149 (237)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .+    +.++.+|+.+.  +...     .....|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~~----~~~i~gd~~~~~~l~~a-----~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---LK----ATIIHGDGSHKEILRDA-----EVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---SS----SEEEESCTTSHHHHHHH-----TCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---cC----CeEEEcCCCCHHHHHhc-----CcccCC
Confidence            4777776  677776666552 256899999999877654432   22    57888987653  3322     136789


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +|++...............+.+.+...+++
T Consensus        68 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           68 VVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            998765544333344444455555555554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.80  E-value=0.29  Score=42.14  Aligned_cols=94  Identities=12%  Similarity=0.044  Sum_probs=60.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  147 (237)
                      ..+|+-+|+  |..+..+++.+. .+..|+.||.+++.++.+++    .|    +.++.||+.+  .+...     +...
T Consensus         4 ~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a-----gi~~   68 (413)
T 3l9w_A            4 GMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAAK   68 (413)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT-----TTTT
T ss_pred             CCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc-----CCCc
Confidence            457888988  555555554442 25689999999999887664    23    5678899866  34332     2467


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .|+|++..+.......+-...+.+.|+..+++
T Consensus        69 A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           69 AEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             CSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            89988765443323333344466777765555

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.79  E-value=0.98  Score=35.69  Aligned_cols=79  Identities=18%  Similarity=0.194  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH--H----HHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL--D----QLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~  141 (237)
                      .+++++|-.|.+.| .+..+++.+ ..+.+|+.++.+++.++...+.+   +  .++.++.+|..+.-  .    ...+.
T Consensus         6 l~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            6 YQGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            35788999996654 444444443 23679999999988776655544   2  36888888875521  1    11111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++..+.
T Consensus        80 ---~g~id~lv~nAg   91 (255)
T 4eso_A           80 ---LGAIDLLHINAG   91 (255)
T ss_dssp             ---HSSEEEEEECCC
T ss_pred             ---hCCCCEEEECCC
Confidence               268999987653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.49  E-value=1.1  Score=36.12  Aligned_cols=105  Identities=13%  Similarity=0.197  Sum_probs=62.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch-HHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRE-TYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      ++++||-.|.+.| .+..+++.+. .+.+|+.++.+++ ..+...+.++..+  .++.++.+|..+.      +....++
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5678999996554 4455444432 3679999998875 3444555555444  4688899887552      2222222


Q ss_pred             CCCCCceeEEEEeCCCc---C-----c---------------HHHHHHHHccCCCCeEEEEe
Q 026547          142 SENEGSFDYAFVDADKV---N-----Y---------------WNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~---~-----~---------------~~~~~~~~~~L~~gG~lv~~  180 (237)
                         .+.+|+++..+...   .     .               ....+.+.+.++++|.||.-
T Consensus       123 ---~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 ---LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             ---HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ---cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence               25899998764321   0     1               12344555777888876653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.45  E-value=0.26  Score=42.55  Aligned_cols=66  Identities=15%  Similarity=0.101  Sum_probs=46.4

Q ss_pred             ccccHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHh
Q 026547           52 MSTAPDAGQLMAMLL----KLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQIMAIDVNRETYEIGLPVIKK  117 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~----~~~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~  117 (237)
                      +.+++..++++...+    ....+-.|+|+|.|.|..+.-+++.+.    ...+++.||+|+...+.-++.+..
T Consensus       115 PeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          115 PELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            345565666664432    222357999999999998887765542    134899999999998877777764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=92.35  E-value=0.93  Score=39.19  Aligned_cols=103  Identities=11%  Similarity=0.143  Sum_probs=58.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHH------------HHhcCCCCcEEEEeccchH
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPV------------IKKAGVDHKINFIESEALS  133 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~  133 (237)
                      .+..+..+|--||+  |+.+..+|..+..+.+|+++|.+++.++..++.            +.+ + ..++++ ..|..+
T Consensus        31 ~r~~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l~~-ttd~~e  105 (432)
T 3pid_A           31 GRGSEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNFRA-TTDKHD  105 (432)
T ss_dssp             ----CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEE-ESCHHH
T ss_pred             ccccCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCeEE-EcCHHH
Confidence            33444567888887  565555555444467899999999988766541            111 0 112322 222222


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .   +       ..-|+||+..+..           ......+.+.+ |++|.++|......
T Consensus       106 a---~-------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~  156 (432)
T 3pid_A          106 A---Y-------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIP  156 (432)
T ss_dssp             H---H-------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCC
T ss_pred             H---H-------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence            2   1       4568888764432           23455677778 89988887655443

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.24  E-value=0.83  Score=37.46  Aligned_cols=96  Identities=11%  Similarity=0.036  Sum_probs=60.2

Q ss_pred             HHhhcCCCEEEEEc-c-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH-HHHHHhhc
Q 026547           65 LLKLVNAKKTIEIG-V-FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS-VLDQLLKD  141 (237)
Q Consensus        65 l~~~~~~~~vLeiG-~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~  141 (237)
                      .+...++++||-+| + +.|..++.+++..  +.+|++++ +++..+.+    ++.|.+   .++..+..+ +...    
T Consensus       147 ~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~----~~lGa~---~~i~~~~~~~~~~~----  212 (321)
T 3tqh_A          147 QAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFL----KALGAE---QCINYHEEDFLLAI----  212 (321)
T ss_dssp             HTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHH----HHHTCS---EEEETTTSCHHHHC----
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHH----HHcCCC---EEEeCCCcchhhhh----
Confidence            34566788999997 3 4577788888875  46899887 44444444    445643   233322222 2221    


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         ...+|+||-....    ..++.+.+.|+++|.++.-.
T Consensus       213 ---~~g~D~v~d~~g~----~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          213 ---STPVDAVIDLVGG----DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             ---CSCEEEEEESSCH----HHHHHHGGGEEEEEEEEECC
T ss_pred             ---ccCCCEEEECCCc----HHHHHHHHhccCCCEEEEeC
Confidence               2679998744332    23477889999999998753

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=92.13  E-value=0.28  Score=40.56  Aligned_cols=94  Identities=12%  Similarity=0.004  Sum_probs=63.0

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      +|||+-||.|..++-+-++ + --.+.++|+++.+.+..+.++   +    -+++.+|+.+.-...      ....|+++
T Consensus         2 kvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~---~----~~~~~~DI~~i~~~~------~~~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH---S----AKLIKGDISKISSDE------FPKCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHC---C----SEEEESCGGGCCGGG------SCCCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC---C----CCcccCChhhCCHhh------CCcccEEE
Confidence            6999999999998888664 1 235789999999988877765   2    357889987754321      36789886


Q ss_pred             EeCCC------------cC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          153 VDADK------------VN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       153 id~~~------------~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ...+.            .+     +.++++ +.+.++| -++++.|+.
T Consensus        67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r-~i~~~~P-k~~~~ENV~  112 (331)
T 3ubt_Y           67 GGPPSQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKP-IFFLAENVK  112 (331)
T ss_dssp             CCCCGGGTEETTEECCTTCGGGHHHHHHHH-HHHHHCC-SEEEEEECC
T ss_pred             ecCCCCCcCCCCCccCCCCchhHHHHHHHH-HHhccCC-eEEEeeeec
Confidence            43111            11     223333 3366788 477888874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.11  E-value=0.98  Score=37.09  Aligned_cols=83  Identities=11%  Similarity=0.158  Sum_probs=56.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .+++||-.|++.| ++..+++.+ ..+.+|+.++.+++.++.+.+.+...+...++.++.+|..+.      +....+. 
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   84 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR-   84 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence            4678999997655 445554444 236799999999998888877777666444788999887552      2222222 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|+++..+.
T Consensus        85 --~g~id~lv~nAg   96 (319)
T 3ioy_A           85 --FGPVSILCNNAG   96 (319)
T ss_dssp             --TCCEEEEEECCC
T ss_pred             --CCCCCEEEECCC
Confidence              368999987754

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.03  E-value=0.16  Score=40.26  Aligned_cols=87  Identities=16%  Similarity=0.102  Sum_probs=52.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC----EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-DG----QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~~----~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      .+|.-||+|  ..+..+++.+.. +.    +|+.+|.+++.++..++.+   |.    .. ..+..+.+          .
T Consensus         3 ~~i~iIG~G--~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g~----~~-~~~~~e~~----------~   62 (247)
T 3gt0_A            3 KQIGFIGCG--NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---GL----TT-TTDNNEVA----------K   62 (247)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---CC----EE-CSCHHHHH----------H
T ss_pred             CeEEEECcc--HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---CC----EE-eCChHHHH----------H
Confidence            357788875  444444433321 22    8999999998776655432   42    22 22332322          3


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      ..|+||+........+.++.+.+.+++|.+++
T Consensus        63 ~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           63 NADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             HCSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             hCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            56999988876667788888878888877665

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=91.72  E-value=1.6  Score=35.93  Aligned_cols=93  Identities=12%  Similarity=0.038  Sum_probs=59.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCce
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSF  148 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~  148 (237)
                      .++|+-+|+  |..+..+++.+...+.|+.+|.+++.++ +++    .    .+.++.||+.+.  +...     +.+..
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~----~----~~~~i~gd~~~~~~L~~a-----~i~~a  178 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR----S----GANFVHGDPTRVSDLEKA-----NVRGA  178 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH----T----TCEEEESCTTSHHHHHHT-----CSTTE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh----C----CcEEEEeCCCCHHHHHhc-----Chhhc
Confidence            458999887  7888888877643333999999998876 543    2    378899998663  3322     24789


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |.+++..+.....-..-...+.+.|...++.
T Consensus       179 ~~vi~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          179 RAVIVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             cEEEEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            9988765432222222333466777755555

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.67  E-value=0.9  Score=37.40  Aligned_cols=89  Identities=12%  Similarity=0.025  Sum_probs=53.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C-CEEEEEeCCch---HHHHHHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCCCC
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-D-GQIMAIDVNRE---TYEIGLPVIKKAGVDHKINFIES-EALSVLDQLLKDSENE  145 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~-~~v~~vD~~~~---~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~  145 (237)
                      .+|.-||+  |..+..++..+.. + .+|+++|.+++   ..+...+.+.+.|.       .. +..+.+          
T Consensus        25 m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~~----------   85 (317)
T 4ezb_A           25 TTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAGI----------   85 (317)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGGG----------
T ss_pred             CeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHHH----------
Confidence            57888987  5555555544432 4 58999999873   22222233333442       22 333321          


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..-|+||+........+.++.+.+.+++|.+++-
T Consensus        86 ~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           86 ACADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             GGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             hcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            4568888877666666667777788888766553

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=91.51  E-value=1  Score=35.99  Aligned_cols=82  Identities=12%  Similarity=0.150  Sum_probs=56.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.|- +..+++.+ ..+++|+.+|.+++.++.+.+.++..|.  ++.++++|..+      ......++
T Consensus         5 L~gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467899999977765 33333333 2378999999999999888888887763  58888888654      22222222


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .++.|+++.++.
T Consensus        82 ---~G~iDiLVNNAG   93 (254)
T 4fn4_A           82 ---YSRIDVLCNNAG   93 (254)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---cCCCCEEEECCc
Confidence               378999987653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.50  E-value=0.81  Score=39.76  Aligned_cols=98  Identities=17%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhc---CC---------CCcEEEEeccchHHHHHH
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKA---GV---------DHKINFIESEALSVLDQL  138 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~---------~~~v~~~~~d~~~~~~~~  138 (237)
                      .+|.-||+  |+.+..+|..+.. +.+|+++|.+++.++..++.....   ++         ..++++ ..|..+.   .
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea---~   76 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQA---V   76 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHH---G
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHH---H
Confidence            46777887  6665555544432 468999999998877655411000   00         112332 2232222   1


Q ss_pred             hhcCCCCCceeEEEEeCCCc----------CcHHHHHHHHccCCCCeEEEEeCc
Q 026547          139 LKDSENEGSFDYAFVDADKV----------NYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                             ...|+||+..+..          ...+.++.+.+.|++|.+++....
T Consensus        77 -------~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           77 -------PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             -------GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             -------hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence                   4578998876544          456677888888988877766543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=91.50  E-value=0.39  Score=40.91  Aligned_cols=64  Identities=13%  Similarity=0.126  Sum_probs=43.8

Q ss_pred             ccHHHHHHHHHHHh-----hcCC--CEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCchHHHHHHHHHHh
Q 026547           54 TAPDAGQLMAMLLK-----LVNA--KKTIEIGVFTGYSLLLTALTIP------EDGQIMAIDVNRETYEIGLPVIKK  117 (237)
Q Consensus        54 ~~~~~~~~l~~l~~-----~~~~--~~vLeiG~G~G~~~~~la~~~~------~~~~v~~vD~~~~~~~~a~~~~~~  117 (237)
                      +++..++++...+.     ...+  -.|+|+|.|.|..+.-+++.+.      ...+++.||+|+...+.-++.+..
T Consensus        57 is~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           57 ISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             HCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            45666666655432     2222  3799999999999887776542      234899999999888765555543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.27  E-value=0.65  Score=37.25  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC--EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC-c
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-DG--QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG-S  147 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-~  147 (237)
                      ++|.-||+|  ..+..++..+.. +.  +|+++|.+++..+.++    +.|...  . ...+..+.          .. .
T Consensus         2 ~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~----------~~~~   62 (281)
T 2g5c_A            2 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV----------EDFS   62 (281)
T ss_dssp             CEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG----------GGTC
T ss_pred             cEEEEEecC--HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHH----------hcCC
Confidence            367788874  444444433321 22  7999999988776544    335321  1 11222222          14 6


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .|+|++........+.++.+.+.++++.+++.
T Consensus        63 aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            79999887766666777777788888875553

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.24  E-value=3.5  Score=33.24  Aligned_cols=79  Identities=11%  Similarity=0.135  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcccc----cH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHH
Q 026547           69 VNAKKTIEIGVFT----GY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQ  137 (237)
Q Consensus        69 ~~~~~vLeiG~G~----G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~  137 (237)
                      .+++++|-.|.+.    |. .+..|++   .+.+|+.++.++...+.+++..+..+   ++.++.+|..+.      +..
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~---~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAARE---AGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHH---TTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHH
Confidence            4678999999763    32 2333444   36789999998766555555555444   478888887542      222


Q ss_pred             HhhcCCCCCceeEEEEeCC
Q 026547          138 LLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~  156 (237)
                      ..+.   .+++|+++..+.
T Consensus       103 ~~~~---~g~iD~lVnnAG  118 (293)
T 3grk_A          103 LEKK---WGKLDFLVHAIG  118 (293)
T ss_dssp             HHHH---TSCCSEEEECCC
T ss_pred             HHHh---cCCCCEEEECCc
Confidence            2222   368999987754

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.10  E-value=2.3  Score=33.59  Aligned_cols=81  Identities=12%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAI-DVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      ..++++|-.|++.| .+..+++.+. .+.+|+.+ +.+++..+...+.++..+  .++.++.+|..+.      +....+
T Consensus         6 l~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            6 FTNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678999997655 4444444331 36788888 667777776666666554  3578888887542      222221


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      .   .+++|+++..+
T Consensus        83 ~---~g~id~lv~nA   94 (259)
T 3edm_A           83 K---FGEIHGLVHVA   94 (259)
T ss_dssp             H---HCSEEEEEECC
T ss_pred             H---hCCCCEEEECC
Confidence            1   25899998765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=90.81  E-value=2.7  Score=33.06  Aligned_cols=82  Identities=11%  Similarity=0.022  Sum_probs=51.5

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVF-TGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G-~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      .++++||-.|.+ +|..+..+++.+. .+.+|+.++.+....+.+++..+..+   ++.++.+|..+.      +....+
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHH
Confidence            467899999964 2344444444331 36799999998766666666555544   377888886542      222222


Q ss_pred             cCCCCCceeEEEEeCC
Q 026547          141 DSENEGSFDYAFVDAD  156 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~  156 (237)
                      .   .+++|+++..+.
T Consensus        89 ~---~g~id~lv~nAg  101 (271)
T 3ek2_A           89 H---WDSLDGLVHSIG  101 (271)
T ss_dssp             H---CSCEEEEEECCC
T ss_pred             H---cCCCCEEEECCc
Confidence            2   368999987653

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.78  E-value=0.16  Score=42.04  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch--HHHHHHhhcCCCCCce
Q 026547           73 KTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL--SVLDQLLKDSENEGSF  148 (237)
Q Consensus        73 ~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~~~~~~~  148 (237)
                      +||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .|.+   .++..+-.  +.+..+     ....+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~-----~~~~~  218 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGAS---EVISREDVYDGTLKAL-----SKQQW  218 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCS---EEEEHHHHCSSCCCSS-----CCCCE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCchHHHHHHh-----hcCCc
Confidence            8999996  5566777788765  4689999999888877765    3532   12221100  001111     12469


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+||-....    +.++...+.|+++|.++.-..
T Consensus       219 d~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          219 QGAVDPVGG----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             EEEEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred             cEEEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence            998644432    357888899999999987543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.71  E-value=2.4  Score=33.13  Aligned_cols=81  Identities=21%  Similarity=0.148  Sum_probs=54.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH------HHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL------DQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~~~  142 (237)
                      .+++||-.|+.. ..+..+++.+. .+.+|+.++.+++..+...+.+...+  .++.++.+|..+.-      ....+. 
T Consensus         8 ~~k~vlITGas~-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   83 (253)
T 3qiv_A            8 ENKVGIVTGSGG-GIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE-   83 (253)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            567899999654 44555544442 36799999999988887777776654  46888888876521      111111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|.++..+.
T Consensus        84 --~g~id~li~~Ag   95 (253)
T 3qiv_A           84 --FGGIDYLVNNAA   95 (253)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              258999987754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=90.69  E-value=2.5  Score=34.15  Aligned_cols=81  Identities=14%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--hHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR--ETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      +++++|-.|.+. ..+..+++.+. .+.+|+.++.+.  ...+...+.++..+  .++.++.+|..+.      +....+
T Consensus        48 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDS-GIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            567899999654 44555554442 367899988763  34555555555555  3688888887542      222222


Q ss_pred             cCCCCCceeEEEEeCC
Q 026547          141 DSENEGSFDYAFVDAD  156 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~  156 (237)
                      .   .+.+|+++..+.
T Consensus       125 ~---~g~iD~lv~nAg  137 (294)
T 3r3s_A          125 A---LGGLDILALVAG  137 (294)
T ss_dssp             H---HTCCCEEEECCC
T ss_pred             H---cCCCCEEEECCC
Confidence            1   268999987654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.65  E-value=0.69  Score=39.22  Aligned_cols=42  Identities=26%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLP  113 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  113 (237)
                      ++.+|+-+|+|. |..+..+++.++  .+|+.+|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLG--AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            578999999864 334555666654  589999999887766544

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=90.49  E-value=1.3  Score=35.22  Aligned_cols=83  Identities=10%  Similarity=0.043  Sum_probs=54.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  146 (237)
                      .++++|-.|++. ..+..+++.+. .+.+|+.++.+++..+...+.+...+...++.++.+|..+  .+..+.++   .+
T Consensus         9 ~~k~~lVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~g   84 (267)
T 3t4x_A            9 KGKTALVTGSTA-GIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK---YP   84 (267)
T ss_dssp             TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH---CC
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh---cC
Confidence            567888888654 44454444432 3679999999998887777777665544567888888654  22333322   36


Q ss_pred             ceeEEEEeCC
Q 026547          147 SFDYAFVDAD  156 (237)
Q Consensus       147 ~~D~i~id~~  156 (237)
                      ++|+++..+.
T Consensus        85 ~id~lv~nAg   94 (267)
T 3t4x_A           85 KVDILINNLG   94 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            8999987653

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.48  E-value=4.8  Score=31.73  Aligned_cols=81  Identities=20%  Similarity=0.133  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCch---HHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHh
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRE---TYEIGLPVIKKAGVDHKINFIESEALSV------LDQLL  139 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~  139 (237)
                      .++.+|-.|.+.| .+..+++.+. .+.+|+.++.+..   .++...+.++..+  .++.++.+|..+.      +....
T Consensus        10 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGIKN-LGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            5678999997655 5555555543 3678999876543   4444444444443  4688888886542      22221


Q ss_pred             hcCCCCCceeEEEEeCC
Q 026547          140 KDSENEGSFDYAFVDAD  156 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~  156 (237)
                      +.   .+++|+++..+.
T Consensus        87 ~~---~g~iD~lvnnAg  100 (262)
T 3ksu_A           87 KE---FGKVDIAINTVG  100 (262)
T ss_dssp             HH---HCSEEEEEECCC
T ss_pred             HH---cCCCCEEEECCC
Confidence            11   268999987654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.45  E-value=0.49  Score=38.29  Aligned_cols=87  Identities=8%  Similarity=-0.022  Sum_probs=54.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C---CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-D---GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .+|.-||+|  ..+..++..+.. +   .+|+.+|.+++.++..++.   .|    +.+ ..+..+.   .       ..
T Consensus         4 ~~I~iIG~G--~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~-~~~~~~~---~-------~~   63 (280)
T 3tri_A            4 SNITFIGGG--NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHT-TQDNRQG---A-------LN   63 (280)
T ss_dssp             SCEEEESCS--HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEE-ESCHHHH---H-------SS
T ss_pred             CEEEEEccc--HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEE-eCChHHH---H-------hc
Confidence            568888885  444433333211 2   2799999999877665543   23    332 2232222   2       56


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHcc-CCCCeEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKL-LKVGGIAV  178 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~-L~~gG~lv  178 (237)
                      .|+||+........+.++.+.+. ++++.+++
T Consensus        64 aDvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           64 ADVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             CCeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            79999988777778888888877 77765554

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=90.36  E-value=3.9  Score=32.54  Aligned_cols=82  Identities=18%  Similarity=0.190  Sum_probs=50.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC-chHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVN-RETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      ..++.+|-.|++.| .+..+++.+. .+.+|+.++.. .+..+...+.++..+  .++.++.+|..+.      +....+
T Consensus        29 l~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           29 LAGKTAFVTGGSRG-IGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            35788999997654 4444444332 36789888654 455565566666555  3688888887542      222222


Q ss_pred             cCCCCCceeEEEEeCC
Q 026547          141 DSENEGSFDYAFVDAD  156 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~  156 (237)
                      .   .+++|+++..+.
T Consensus       106 ~---~g~iD~lvnnAg  118 (271)
T 3v2g_A          106 A---LGGLDILVNSAG  118 (271)
T ss_dssp             H---HSCCCEEEECCC
T ss_pred             H---cCCCcEEEECCC
Confidence            1   258999987653

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=90.35  E-value=4  Score=31.46  Aligned_cols=86  Identities=9%  Similarity=0.042  Sum_probs=52.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPED--GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEG  146 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~  146 (237)
                      .++||-+| |+|..+..+++.+...  .+|++++.+++.+..        -...+++++.+|..+.  +...      ..
T Consensus        23 mk~vlVtG-atG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~------~~   87 (236)
T 3qvo_A           23 MKNVLILG-AGGQIARHVINQLADKQTIKQTLFARQPAKIHK--------PYPTNSQIIMGDVLNHAALKQA------MQ   87 (236)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS--------SCCTTEEEEECCTTCHHHHHHH------HT
T ss_pred             ccEEEEEe-CCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc--------cccCCcEEEEecCCCHHHHHHH------hc
Confidence            35788888 5677777777666443  489999988764321        0124688999998653  3333      25


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccC
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLL  171 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L  171 (237)
                      .+|.||............+.+.+.+
T Consensus        88 ~~D~vv~~a~~~~~~~~~~~~~~~~  112 (236)
T 3qvo_A           88 GQDIVYANLTGEDLDIQANSVIAAM  112 (236)
T ss_dssp             TCSEEEEECCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHHHHHHHH
Confidence            6899987766544333333343333

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.32  E-value=1.9  Score=34.14  Aligned_cols=81  Identities=15%  Similarity=0.122  Sum_probs=54.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      .+++.+|-.|++.|. +..+++.+ ..+.+|+.++.+++.++...+.+...+  .++.++.+|..+.      +....+.
T Consensus         9 l~~k~vlVTGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPAL-GTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTTH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHH-HHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899999986654 33333333 136799999999988888777777665  4688898887542      2222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++..+
T Consensus        86 ---~g~id~lv~nA   96 (264)
T 3ucx_A           86 ---YGRVDVVINNA   96 (264)
T ss_dssp             ---TSCCSEEEECC
T ss_pred             ---cCCCcEEEECC
Confidence               36899998765

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.25  E-value=2.8  Score=33.22  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=62.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      ..++++|-.|++.| .+..+++.+. .+.+|+.++. +.+..+...+.++..+  .++.++.+|..+.      +....+
T Consensus        16 l~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           16 LDGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             CTTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678998886654 4444444332 3678888776 4455666666666554  4688888887552      122211


Q ss_pred             cCCCCCceeEEEEeCCCcC-------c---------------HHHHHHHHccCCCCeEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVN-------Y---------------WNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~-------~---------------~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .   .+++|+++..+....       .               ....+.+.+.++++|.||.-..
T Consensus        93 ~---~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  153 (270)
T 3is3_A           93 H---FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS  153 (270)
T ss_dssp             H---HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             H---cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence            1   257899986643211       1               1233445577777887766433

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.23  E-value=1.5  Score=34.70  Aligned_cols=78  Identities=14%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             CCEEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           71 AKKTIEIGVFT-GYS-LLLTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        71 ~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ..+|+-+|+|. |.. +..|++. + -++++.+|.+.                   ...+.+.+.+.+.+..-+++.+..
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~-G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA-G-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc-C-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            46899999963 222 2233332 2 35999999987                   677777777776654335666665


Q ss_pred             cchH-HHHHHhhcCCCCCceeEEEEeCC
Q 026547          130 EALS-VLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       130 d~~~-~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      +..+ .+..+      ...+|+|+...+
T Consensus       109 ~~~~~~~~~~------~~~~DvVi~~~d  130 (249)
T 1jw9_B          109 LLDDAELAAL------IAEHDLVLDCTD  130 (249)
T ss_dssp             CCCHHHHHHH------HHTSSEEEECCS
T ss_pred             cCCHhHHHHH------HhCCCEEEEeCC
Confidence            4432 22222      257999976543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=90.21  E-value=1.1  Score=37.65  Aligned_cols=91  Identities=11%  Similarity=0.026  Sum_probs=56.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      +..+|.-||+  |..+..++..+. .+.+|+++|.+++.++.+.+    .|.    . ...+..+....       ....
T Consensus        21 ~~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~-------a~~~   82 (358)
T 4e21_A           21 QSMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAK-------LVKP   82 (358)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHH-------SCSS
T ss_pred             cCCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhc-------CCCC
Confidence            3568999987  555555544432 24689999999887665433    232    1 12233344332       2456


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      |+||+-.......+.++.+.+.|++|.+++
T Consensus        83 DvVi~~vp~~~v~~vl~~l~~~l~~g~iiI  112 (358)
T 4e21_A           83 RVVWLMVPAAVVDSMLQRMTPLLAANDIVI  112 (358)
T ss_dssp             CEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            999887666566777888888888876655

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=90.20  E-value=2  Score=33.80  Aligned_cols=83  Identities=16%  Similarity=0.077  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhc-CCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKD-SENE  145 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~  145 (237)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.++..+  .++.++.+|..+.  +..+.+. ... 
T Consensus         6 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   81 (252)
T 3h7a_A            6 RNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH-   81 (252)
T ss_dssp             CSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence            5678999997655 444444433 136799999999998888887777665  4688999887552  2222111 001 


Q ss_pred             CceeEEEEeCC
Q 026547          146 GSFDYAFVDAD  156 (237)
Q Consensus       146 ~~~D~i~id~~  156 (237)
                      +.+|+++..+.
T Consensus        82 g~id~lv~nAg   92 (252)
T 3h7a_A           82 APLEVTIFNVG   92 (252)
T ss_dssp             SCEEEEEECCC
T ss_pred             CCceEEEECCC
Confidence            58999987654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=90.03  E-value=0.57  Score=39.13  Aligned_cols=102  Identities=16%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEE-EEeCCchHHHHHHHHHHhcCCCCcEEEEeccch--HHHHHHhhc
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIM-AIDVNRETYEIGLPVIKKAGVDHKINFIESEAL--SVLDQLLKD  141 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~  141 (237)
                      ...++.+||-+|+  +.|..++.+|+..  +++++ .++.++.. +.-++.+++.|.+   .++..+-.  +.+..... 
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~-~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~~~-  236 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDI-QKLSDRLKSLGAE---HVITEEELRRPEMKNFFK-  236 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCH-HHHHHHHHHTTCS---EEEEHHHHHSGGGGGTTS-
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccch-HHHHHHHHhcCCc---EEEecCcchHHHHHHHHh-
Confidence            4556789999996  5677788888875  45554 44544332 1112334455642   22221100  11111100 


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                        ....+|+||-....   .. .....+.|+++|.++.-.
T Consensus       237 --~~~~~Dvvid~~g~---~~-~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          237 --DMPQPRLALNCVGG---KS-STELLRQLARGGTMVTYG  270 (357)
T ss_dssp             --SSCCCSEEEESSCH---HH-HHHHHTTSCTTCEEEECC
T ss_pred             --CCCCceEEEECCCc---HH-HHHHHHhhCCCCEEEEEe
Confidence              01258988643321   22 345779999999998753

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=90.03  E-value=4.2  Score=32.24  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           70 NAKKTIEIGVF-TGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G-~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      .+++||-.|.+ +|..+..+++.+. .+.+|+.++.+++..+..++..+..+   .+.++.+|..+.      +....+.
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46789999975 2455555555442 36799999998763223333222223   267778886542      2222222


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++..+.
T Consensus        82 ---~g~id~lv~nAg   93 (275)
T 2pd4_A           82 ---LGSLDFIVHSVA   93 (275)
T ss_dssp             ---TSCEEEEEECCC
T ss_pred             ---cCCCCEEEECCc
Confidence               368999987654

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=89.94  E-value=0.6  Score=39.20  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=51.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  147 (237)
                      +..+||-+||  |..+..+++.+.....|+..|.+.+.++.+++         .+..+..|+.+  .+..+      ...
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~------~~~   77 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEV------MKE   77 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHH------HTT
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHH------HhC
Confidence            3458999998  77777777777667899999999877665433         24455556543  33333      257


Q ss_pred             eeEEEEeCCCcCcHHHHHHHH
Q 026547          148 FDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~  168 (237)
                      .|+|+.-.+........+.|.
T Consensus        78 ~DvVi~~~p~~~~~~v~~~~~   98 (365)
T 3abi_A           78 FELVIGALPGFLGFKSIKAAI   98 (365)
T ss_dssp             CSEEEECCCGGGHHHHHHHHH
T ss_pred             CCEEEEecCCcccchHHHHHH
Confidence            898876544333334444443

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=89.78  E-value=1.7  Score=37.00  Aligned_cols=92  Identities=9%  Similarity=0.082  Sum_probs=55.9

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--------------CCcEEEEeccchHHHHHH
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--------------DHKINFIESEALSVLDQL  138 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~~~  138 (237)
                      +|.-||+  |+.+..++..+..+.+|+++|.+++.++..++    .+.              ..++.+ ..+..+.+   
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~----~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~~~---   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINN----GLSPIQDEYIEYYLKSKQLSIKA-TLDSKAAY---   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT----TCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHH---
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHc----CCCCcCCCCHHHHHHhccCcEEE-eCCHHHHh---
Confidence            4667777  77777776666545689999999887765432    121              011222 12222221   


Q ss_pred             hhcCCCCCceeEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEeCc
Q 026547          139 LKDSENEGSFDYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                             ...|+||+.....           ...+.++.+.+ +++|.+++....
T Consensus        72 -------~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST  118 (402)
T 1dlj_A           72 -------KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKST  118 (402)
T ss_dssp             -------HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSC
T ss_pred             -------cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCC
Confidence                   3568998876544           25667777778 888887776333

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.47  E-value=1.5  Score=35.04  Aligned_cols=82  Identities=15%  Similarity=0.175  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      ..++.+|-.|++.| .+..+++.+. .+.+|+.++.+++.++...+.++..+  .++.++.+|..+.      +....+.
T Consensus        22 ~~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (279)
T 3sju_A           22 SRPQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVER   98 (279)
T ss_dssp             ---CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35788999996554 4444444331 36799999999988887777776655  3688898887542      2222221


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++..+.
T Consensus        99 ---~g~id~lv~nAg  110 (279)
T 3sju_A           99 ---FGPIGILVNSAG  110 (279)
T ss_dssp             ---HCSCCEEEECCC
T ss_pred             ---cCCCcEEEECCC
Confidence               268999987654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=89.17  E-value=2.2  Score=33.15  Aligned_cols=81  Identities=12%  Similarity=0.097  Sum_probs=54.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      +++++|-.|++ |..+..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.      +....+. 
T Consensus         4 ~~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~-   79 (247)
T 3lyl_A            4 NEKVALVTGAS-RGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE-   79 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT-
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH-
Confidence            46788888865 444454444332 36799999999988887777777665  3588888887542      2222222 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|.++..+.
T Consensus        80 --~~~id~li~~Ag   91 (247)
T 3lyl_A           80 --NLAIDILVNNAG   91 (247)
T ss_dssp             --TCCCSEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              467999987654

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.12  E-value=1.8  Score=34.23  Aligned_cols=81  Identities=15%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             cCCCEEEEEcc-cccH---HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHH
Q 026547           69 VNAKKTIEIGV-FTGY---SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQL  138 (237)
Q Consensus        69 ~~~~~vLeiG~-G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~  138 (237)
                      .++++||-.|. |.|.   .+..|++   .+.+|+.++.+++..+...+.++..+ ..++.++.+|..+.      +...
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~---~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALL---EGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHH---CCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHH
Confidence            35778999987 4543   2233444   36799999999988887777776554 24689999987542      2222


Q ss_pred             hhcCCCCCceeEEEEeCC
Q 026547          139 LKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~  156 (237)
                      .+.   .+++|+++..+.
T Consensus        96 ~~~---~g~id~li~~Ag  110 (266)
T 3o38_A           96 VEK---AGRLDVLVNNAG  110 (266)
T ss_dssp             HHH---HSCCCEEEECCC
T ss_pred             HHH---hCCCcEEEECCC
Confidence            211   257899987654

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=89.04  E-value=0.47  Score=40.08  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=46.3

Q ss_pred             cCCCEEEEEcccc---cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFT---GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~---G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      .++.+||-+|.|+   |..++.+|+..  +.+|++++.+++..+.+++    .|.+.-+.....+..+.+..+..    .
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~  238 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----S  238 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----H
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----C
Confidence            5678899985444   55566777765  4689999999988877764    46432222222333333333221    1


Q ss_pred             CceeEEEEeC
Q 026547          146 GSFDYAFVDA  155 (237)
Q Consensus       146 ~~~D~i~id~  155 (237)
                      ..+|+||-..
T Consensus       239 ~g~d~v~d~~  248 (379)
T 3iup_A          239 TGATIAFDAT  248 (379)
T ss_dssp             HCCCEEEESC
T ss_pred             CCceEEEECC
Confidence            4699987443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.95  E-value=1  Score=36.96  Aligned_cols=96  Identities=8%  Similarity=-0.015  Sum_probs=55.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC---CcEEEEe-ccchHHHHHHhhcCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD---HKINFIE-SEALSVLDQLLKDSEN  144 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~-~d~~~~~~~~~~~~~~  144 (237)
                      ...+|.-||+|.  .+..++..+. .+.+|+.+ .+++.++..++.    |+.   +...+.. ..+......       
T Consensus        18 ~~~kI~IiGaGa--~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~----g~~~~~~~~~~~~~~~~~~~~~~-------   83 (318)
T 3hwr_A           18 QGMKVAIMGAGA--VGCYYGGMLARAGHEVILI-ARPQHVQAIEAT----GLRLETQSFDEQVKVSASSDPSA-------   83 (318)
T ss_dssp             --CEEEEESCSH--HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH----CEEEECSSCEEEECCEEESCGGG-------
T ss_pred             cCCcEEEECcCH--HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC----CeEEEcCCCcEEEeeeeeCCHHH-------
Confidence            456899999864  3333333221 14589888 888777665542    321   0011100 000011111       


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ...+|+|++........+.++.+.+.++++.+++.
T Consensus        84 ~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  118 (318)
T 3hwr_A           84 VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLS  118 (318)
T ss_dssp             GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred             cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEE
Confidence            25789999988777788899999899999876653

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=88.94  E-value=0.86  Score=38.70  Aligned_cols=42  Identities=24%  Similarity=0.239  Sum_probs=31.8

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHH
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLP  113 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~  113 (237)
                      ++.+|+-+|+|. |..+..+++.+  +.+|+++|.++...+.+++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            578999999974 44555566655  4699999999988777655

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=88.94  E-value=6.7  Score=31.29  Aligned_cols=81  Identities=17%  Similarity=0.152  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCch-------HHHHHHHHHHhcCCCCcEEEEeccchHH------H
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRE-------TYEIGLPVIKKAGVDHKINFIESEALSV------L  135 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~-------~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~  135 (237)
                      +++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++       .++...+.++..+  .++.++.+|..+.      +
T Consensus         8 ~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGSRG-IGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            5678999997655 444444444 23679999998876       3445555555554  3688898887542      2


Q ss_pred             HHHhhcCCCCCceeEEEEeCC
Q 026547          136 DQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~  156 (237)
                      ....+.   .+++|+++..+.
T Consensus        85 ~~~~~~---~g~id~lvnnAg  102 (285)
T 3sc4_A           85 AKTVEQ---FGGIDICVNNAS  102 (285)
T ss_dssp             HHHHHH---HSCCSEEEECCC
T ss_pred             HHHHHH---cCCCCEEEECCC
Confidence            222221   258999987653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.89  E-value=0.88  Score=40.06  Aligned_cols=89  Identities=12%  Similarity=0.085  Sum_probs=53.4

Q ss_pred             hcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           68 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        68 ~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...+++|+-+|+|. |......++.+  +.+|+++|.++...+.+++    .|.    ++  .+..+.   +       .
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~---l-------~  328 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEEA---I-------G  328 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHH---G-------G
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH---H-------h
Confidence            34678999999853 33333444443  4699999999987665543    343    22  232222   1       4


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ..|+|+.........  -....+.+++||+++.-
T Consensus       329 ~aDvVi~atgt~~~i--~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          329 DADIVVTATGNKDII--MLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             GCSEEEECSSSSCSB--CHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCCCHHHH--HHHHHHhcCCCcEEEEe
Confidence            679998765433321  12455778999988753

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=88.88  E-value=1.9  Score=33.91  Aligned_cols=84  Identities=12%  Similarity=0.113  Sum_probs=53.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------~~~~~~  140 (237)
                      .+++.+|-.|++.| .+..+++.+. .+.+|+.++.+++.++...+.+...... .++.++.+|..+.      +....+
T Consensus         5 ~~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            35678999997654 3444443331 2679999999998888777777655322 4678888887542      222221


Q ss_pred             cCCCCCceeEEEEeCC
Q 026547          141 DSENEGSFDYAFVDAD  156 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~  156 (237)
                      .   .+++|+++..+.
T Consensus        84 ~---~g~iD~lvnnAg   96 (250)
T 3nyw_A           84 K---YGAVDILVNAAA   96 (250)
T ss_dssp             H---HCCEEEEEECCC
T ss_pred             h---cCCCCEEEECCC
Confidence            1   268999987654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=88.83  E-value=1.4  Score=35.50  Aligned_cols=87  Identities=9%  Similarity=0.058  Sum_probs=54.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH---HHHHhhc-CC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV---LDQLLKD-SE  143 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~~-~~  143 (237)
                      .++++||-.|++.| .+..+++.+ ..+.+|+.++.+++..+.+.+.+...+. .++.++.+|..+.   +..+.+. ..
T Consensus        10 ~~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           10 TKRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             --CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHH
Confidence            35678898886544 455554443 2367999999999888777777766543 4688999887553   2222110 00


Q ss_pred             CCCceeEEEEeCCC
Q 026547          144 NEGSFDYAFVDADK  157 (237)
Q Consensus       144 ~~~~~D~i~id~~~  157 (237)
                      ..+++|+++..+..
T Consensus        88 ~~g~iD~lv~nAg~  101 (311)
T 3o26_A           88 HFGKLDILVNNAGV  101 (311)
T ss_dssp             HHSSCCEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence            02589999987653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=88.82  E-value=3.5  Score=32.73  Aligned_cols=82  Identities=16%  Similarity=0.050  Sum_probs=48.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAI-DVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      ..++.+|-.|.+.| .+..+++.+. .+.+|+.+ ..+++..+...+.++..+  .++.++.+|..+.      +....+
T Consensus        25 ~~~k~~lVTGas~G-IG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  101 (267)
T 3u5t_A           25 ETNKVAIVTGASRG-IGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEE  101 (267)
T ss_dssp             --CCEEEEESCSSH-HHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35788999997655 3444443331 25688877 445666666666666655  3588888886542      222211


Q ss_pred             cCCCCCceeEEEEeCC
Q 026547          141 DSENEGSFDYAFVDAD  156 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~  156 (237)
                      .   .+++|+++..+.
T Consensus       102 ~---~g~iD~lvnnAG  114 (267)
T 3u5t_A          102 A---FGGVDVLVNNAG  114 (267)
T ss_dssp             H---HSCEEEEEECCC
T ss_pred             H---cCCCCEEEECCC
Confidence            1   258999987653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.72  E-value=1.8  Score=36.29  Aligned_cols=95  Identities=6%  Similarity=-0.033  Sum_probs=58.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHh------cCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKK------AGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ..+|.-||+|  .++..++..+.. +.+|+.++.+++.++..++.-..      ..+..++.+ ..|..+.   .     
T Consensus        29 ~mkI~VIGaG--~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea---~-----   97 (356)
T 3k96_A           29 KHPIAILGAG--SWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKAS---L-----   97 (356)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHH---H-----
T ss_pred             CCeEEEECcc--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHH---H-----
Confidence            4579999985  444444443322 35799999998877665553111      011122332 2232222   2     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                        ...|+|++........+.++.+.+.++++.+++
T Consensus        98 --~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivv  130 (356)
T 3k96_A           98 --EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIA  130 (356)
T ss_dssp             --TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred             --hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEE
Confidence              567999988776667788888888898887654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=88.71  E-value=1.7  Score=34.99  Aligned_cols=81  Identities=20%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .++.+|-.|++.| .+..+++.+. .+.+|+.++.+++.++...+.+...+  .++.++.+|..+.      +....+. 
T Consensus        27 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~-  102 (283)
T 3v8b_A           27 PSPVALITGAGSG-IGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK-  102 (283)
T ss_dssp             CCCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            5678999996654 4444444332 36799999999888777776665444  4688888887552      2222211 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|+++..+.
T Consensus       103 --~g~iD~lVnnAg  114 (283)
T 3v8b_A          103 --FGHLDIVVANAG  114 (283)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --hCCCCEEEECCC
Confidence              258999987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.64  E-value=2.2  Score=35.25  Aligned_cols=94  Identities=9%  Similarity=0.083  Sum_probs=57.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCC-------CCcEE--EEeccchHHHHHHhhc
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGV-------DHKIN--FIESEALSVLDQLLKD  141 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-------~~~v~--~~~~d~~~~~~~~~~~  141 (237)
                      .+|.-||+|.  .+..++..+. .+.+|+.+|.+++.++..++..   ++       .....  ....+..+.   +   
T Consensus         5 mki~iiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~---   73 (359)
T 1bg6_A            5 KTYAVLGLGN--GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG---AIIAEGPGLAGTAHPDLLTSDIGLA---V---   73 (359)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT---SEEEESSSCCEEECCSEEESCHHHH---H---
T ss_pred             CeEEEECCCH--HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC---CeEEeccccccccccceecCCHHHH---H---
Confidence            5799999854  4444433321 2458999999988776555431   11       00000  011222111   2   


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                          ...|+|++........+.++.+.+.+++|.+++..
T Consensus        74 ----~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 ----KDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             ----TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             ----hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence                57899999887777788888888899998876654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=88.51  E-value=2.1  Score=34.71  Aligned_cols=82  Identities=16%  Similarity=0.248  Sum_probs=55.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHH----Hhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQ----LLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~----~~~~  141 (237)
                      ..++.||-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+.  +..    ..+.
T Consensus        29 l~gk~vlVTGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGASG-IGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            35788999997654 444444433 236799999999998888877777655  3588888887652  121    1111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+.+|+++..+.
T Consensus       106 ---~g~id~lvnnAg  117 (301)
T 3tjr_A          106 ---LGGVDVVFSNAG  117 (301)
T ss_dssp             ---HSSCSEEEECCC
T ss_pred             ---CCCCCEEEECCC
Confidence               257999987754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=88.50  E-value=3.7  Score=32.33  Aligned_cols=84  Identities=18%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHH----hhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQL----LKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~----~~~  141 (237)
                      ..++++|-.|++ |..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+.  +..+    .+.
T Consensus         5 ~~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            5 VNGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            356789999964 555555554432 36799999998876665555443321123588888887542  1211    111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++..+.
T Consensus        84 ---~g~id~lv~~Ag   95 (267)
T 2gdz_A           84 ---FGRLDILVNNAG   95 (267)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               257899987764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=88.47  E-value=0.56  Score=38.21  Aligned_cols=34  Identities=9%  Similarity=0.103  Sum_probs=27.6

Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..+|+||+........+.++.+.+.++++.+++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            6799999988777778888888888888776554

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=88.45  E-value=2.3  Score=33.62  Aligned_cols=83  Identities=10%  Similarity=0.045  Sum_probs=53.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+.......++.++.+|..+.      .....+. 
T Consensus         7 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSG-IGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT-   84 (265)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH-
Confidence            5678999997655 444444333 136799999999988877777776522223588888887542      2222211 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|+++..+.
T Consensus        85 --~g~id~lvnnAg   96 (265)
T 3lf2_A           85 --LGCASILVNNAG   96 (265)
T ss_dssp             --HCSCSEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              268999987653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=88.43  E-value=1.8  Score=34.51  Aligned_cols=81  Identities=15%  Similarity=0.015  Sum_probs=53.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      .++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.++..+  .++.++.+|..+.      +....+. 
T Consensus         3 ~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~-   78 (264)
T 3tfo_A            3 MDKVILITGASGG-IGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDT-   78 (264)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH-
Confidence            4578888887654 444444433 236799999999988888777777665  3688888887542      1222111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|+++..+.
T Consensus        79 --~g~iD~lVnnAG   90 (264)
T 3tfo_A           79 --WGRIDVLVNNAG   90 (264)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              258999987653

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=88.30  E-value=1.8  Score=34.18  Aligned_cols=82  Identities=12%  Similarity=0.058  Sum_probs=54.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HH----HHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LD----QLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~----~~~~~  141 (237)
                      .++++||-.|++ |..+..+++.+ ..+.+|+.++.+++.++...+.+...+  .++.++.+|..+.  +.    ...+.
T Consensus        27 l~~k~vlITGas-~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           27 LSGQVAVVTGAS-RGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            356789988865 44555555444 236799999999988887777776655  4688888887542  11    11111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|.++..+.
T Consensus       104 ---~g~id~lv~~Ag  115 (262)
T 3rkr_A          104 ---HGRCDVLVNNAG  115 (262)
T ss_dssp             ---HSCCSEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               257999987654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.28  E-value=2.1  Score=37.29  Aligned_cols=99  Identities=12%  Similarity=-0.049  Sum_probs=0.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .+..+|+-+||  |..+..+|+.+...+ .|+.||.+++.++.+.+.+       .+..++||+.+.---..+.   -+.
T Consensus         1 ~~~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Ag---i~~   68 (461)
T 4g65_A            1 SNAMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAG---AQD   68 (461)
T ss_dssp             -CCEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHT---TTT
T ss_pred             CCcCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcC---CCc


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .|+++.-.+....--....+.+.+.+.-.++.
T Consensus        69 ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~ia  100 (461)
T 4g65_A           69 ADMLVAVTNTDETNMAACQVAFTLFNTPNRIA  100 (461)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHHCCSSEEE
T ss_pred             CCEEEEEcCChHHHHHHHHHHHHhcCCcccee

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=88.27  E-value=3.7  Score=32.29  Aligned_cols=81  Identities=14%  Similarity=0.127  Sum_probs=46.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHH----Hhhc
Q 026547           70 NAKKTIEIGVF-TGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQ----LLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G-~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~----~~~~  141 (237)
                      .++++|-.|++ +|..+..+++.+. .+.+|+.++.+++..+..++..+..+   .+.++.+|..+.  +..    ..+.
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            46789999975 2445555444332 25799999998763333333322223   267788886542  122    1111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++..+.
T Consensus        84 ---~g~iD~lv~~Ag   95 (261)
T 2wyu_A           84 ---FGGLDYLVHAIA   95 (261)
T ss_dssp             ---HSSEEEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               258999987654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.22  E-value=1  Score=38.55  Aligned_cols=41  Identities=22%  Similarity=0.178  Sum_probs=30.5

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGL  112 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  112 (237)
                      ++.+|+-+|+|. |..+..+++.++  .+|+.+|.++...+.++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~G--a~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHH
Confidence            478999999864 444555666654  58999999998877653

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=88.19  E-value=0.94  Score=37.60  Aligned_cols=94  Identities=12%  Similarity=0.012  Sum_probs=54.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C-------CEEEEEeCCch-----HHHHHHHHHHhc----C--CCCcEEEEeccch
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPE-D-------GQIMAIDVNRE-----TYEIGLPVIKKA----G--VDHKINFIESEAL  132 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~-~-------~~v~~vD~~~~-----~~~~a~~~~~~~----~--~~~~v~~~~~d~~  132 (237)
                      .+|.-||+|.  .+..++..+.. +       .+|+.+|.+++     ..+..++.-...    +  +..++.+ ..+..
T Consensus         9 mkI~iIG~G~--mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~   85 (354)
T 1x0v_A            9 KKVCIVGSGN--WGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPDVV   85 (354)
T ss_dssp             EEEEEECCSH--HHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESSHH
T ss_pred             CeEEEECCCH--HHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcCHH
Confidence            4799999864  33333332211 2       47999999887     555444321000    1  1112222 12222


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      +.   .       ...|+||+........+.++.+.+.++++.+++
T Consensus        86 ~~---~-------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv  121 (354)
T 1x0v_A           86 QA---A-------EDADILIFVVPHQFIGKICDQLKGHLKANATGI  121 (354)
T ss_dssp             HH---H-------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEE
T ss_pred             HH---H-------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            21   1       568999998877677888888888888877654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=88.09  E-value=0.7  Score=48.64  Aligned_cols=104  Identities=11%  Similarity=0.027  Sum_probs=65.8

Q ss_pred             hhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ...++.+||-.|.  |.|..++.+|+..  +++|++++.+++..+.+++.+...|..   +++.....++.....+. ..
T Consensus      1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~---~v~~~~~~~~~~~i~~~-t~ 1737 (2512)
T 2vz8_A         1664 RMQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDET---CFANSRDTSFEQHVLRH-TA 1737 (2512)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCST---TEEESSSSHHHHHHHHT-TT
T ss_pred             cCCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCce---EEecCCCHHHHHHHHHh-cC
Confidence            3456789999874  5667778888875  579999999888877776644223432   12222222333322111 11


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...+|+|+-.. .   .+.++..++.|+++|.++.-
T Consensus      1738 g~GvDvVld~~-g---~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1738 GKGVDLVLNSL-A---EEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             SCCEEEEEECC-C---HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCceEEEECC-C---chHHHHHHHhcCCCcEEEEe
Confidence            24699996432 1   56788899999999988763

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=88.03  E-value=2.3  Score=34.63  Aligned_cols=60  Identities=10%  Similarity=0.094  Sum_probs=41.2

Q ss_pred             CCCEEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCc------------------hHHHHHHHHHHhcCCCCcEEEEec
Q 026547           70 NAKKTIEIGVFT-GYS-LLLTALTIPEDGQIMAIDVNR------------------ETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~------------------~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      +..+||-+|||. |.. +.+|++. . -++++.+|.+.                  ...+.+++.+++.+..-+++.+..
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            457999999974 443 3345554 2 47999999776                  567778888887775555666665


Q ss_pred             cc
Q 026547          130 EA  131 (237)
Q Consensus       130 d~  131 (237)
                      +.
T Consensus       113 ~l  114 (292)
T 3h8v_A          113 NI  114 (292)
T ss_dssp             CT
T ss_pred             cC
Confidence            44

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.03  E-value=1.9  Score=34.45  Aligned_cols=82  Identities=22%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      ..++++|-.|.+.| .+..+++.+. .+.+|+.++.+++.++...+.+...+  .++.++.+|..+.      +....+.
T Consensus        30 l~gk~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  106 (276)
T 3r1i_A           30 LSGKRALITGASTG-IGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGE  106 (276)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35688999997654 4444444332 36799999999988887777776655  3578888887542      2222111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++..+.
T Consensus       107 ---~g~iD~lvnnAg  118 (276)
T 3r1i_A          107 ---LGGIDIAVCNAG  118 (276)
T ss_dssp             ---HSCCSEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               258999987653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=88.02  E-value=2.9  Score=36.24  Aligned_cols=100  Identities=13%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHH------------HhcCCCCcEEEEeccchHHHHH
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVI------------KKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~------------~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      .-+|--||+  |+.+..+|..+.+ +-+|+++|++++.++..++..            ++.-...++++ ..|..+.   
T Consensus         8 ~~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea---   81 (446)
T 4a7p_A            8 SVRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEG---   81 (446)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHH---
T ss_pred             ceEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHH---
Confidence            346667777  6665555544432 468999999999887655420            00000112322 2232222   


Q ss_pred             HhhcCCCCCceeEEEEeCCCc-----------CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          138 LLKDSENEGSFDYAFVDADKV-----------NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .       ..-|+||+..+.+           ...+.++.+.+.|++|.++|.....
T Consensus        82 ~-------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           82 V-------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             H-------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             H-------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            1       4568888764322           2456677788899998887775543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=88.01  E-value=1.6  Score=34.75  Aligned_cols=82  Identities=11%  Similarity=0.154  Sum_probs=56.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.|. +..+++.+ ..+++|+.+|.+++.++.+.+.+...|.  ++..+++|..+      ......++
T Consensus         7 L~gKvalVTGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            7 LTGKTALVTGSARGL-GFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             CTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            367888988877664 34444333 2378999999999998888887877663  57888888644      22333332


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .++.|+++.++.
T Consensus        84 ---~G~iDiLVNNAG   95 (255)
T 4g81_D           84 ---GIHVDILINNAG   95 (255)
T ss_dssp             ---TCCCCEEEECCC
T ss_pred             ---CCCCcEEEECCC
Confidence               578999987643

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=87.86  E-value=2.6  Score=33.62  Aligned_cols=84  Identities=12%  Similarity=0.118  Sum_probs=54.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~------~~~~~~  140 (237)
                      ..+++||-.|.+.| .+..+++.+ ..+.+|+.++.+++..+.+.+.++..+.. .++.++.+|..+.      +....+
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSG-IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35678999996544 444444433 23679999999998888777777765532 3688899887542      222211


Q ss_pred             cCCCCCceeEEEEeCC
Q 026547          141 DSENEGSFDYAFVDAD  156 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~  156 (237)
                      .   .+++|+++..+.
T Consensus        88 ~---~g~id~lv~nAg  100 (281)
T 3svt_A           88 W---HGRLHGVVHCAG  100 (281)
T ss_dssp             H---HSCCCEEEECCC
T ss_pred             H---cCCCCEEEECCC
Confidence            1   257899987654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=87.84  E-value=3.4  Score=32.75  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--H----HHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--L----DQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~----~~~~~~~  142 (237)
                      .+++||-.|++ |..+..+++.+. .+.+|++++.+++..+...+.++..+  .++.++.+|..+.  +    ....+. 
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~-  105 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE-  105 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH-
Confidence            46789988854 555665555442 36799999999887776666666554  3688898887542  1    222111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|.++..+.
T Consensus       106 --~g~iD~li~~Ag  117 (272)
T 1yb1_A          106 --IGDVSILVNNAG  117 (272)
T ss_dssp             --TCCCSEEEECCC
T ss_pred             --CCCCcEEEECCC
Confidence              357999987654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=87.69  E-value=1.8  Score=34.11  Aligned_cols=81  Identities=21%  Similarity=0.184  Sum_probs=53.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      +++++|-.|++.| .+..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.      +....+. 
T Consensus        11 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~-   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAG-IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ-   86 (256)
T ss_dssp             TTCEEEECSCSSH-HHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH-
Confidence            5678888886654 4444444331 26799999999988887777777655  4688888887552      2222221 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|+++..+.
T Consensus        87 --~g~id~lv~nAg   98 (256)
T 3gaf_A           87 --FGKITVLVNNAG   98 (256)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              258999987653

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=87.45  E-value=1.6  Score=35.04  Aligned_cols=89  Identities=17%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP---EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..+|.-||+|.  .+..++..+.   .+.+|+++|.+++..+.+++    .|...  . ...+..+.          ...
T Consensus         6 ~~~I~iIG~G~--mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~~----------~~~   66 (290)
T 3b1f_A            6 EKTIYIAGLGL--IGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD--E-ATADFKVF----------AAL   66 (290)
T ss_dssp             CCEEEEECCSH--HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS--E-EESCTTTT----------GGG
T ss_pred             cceEEEEeeCH--HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc--c-ccCCHHHh----------hcC
Confidence            35788999854  3333333221   14589999999887765443    34311  1 12222222          145


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHcc-CCCCeEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKL-LKVGGIAV  178 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~-L~~gG~lv  178 (237)
                      .|+|++........+.++.+.+. ++++.+++
T Consensus        67 aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           67 ADVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            78998887666667777877777 88766555

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=87.40  E-value=5  Score=32.63  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=49.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCC--EEEEEeCCchHHHH-HHHHHHhcCCCCcEEEEec-cchHHHHHHhhcCCCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDG--QIMAIDVNRETYEI-GLPVIKKAGVDHKINFIES-EALSVLDQLLKDSENE  145 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~--~v~~vD~~~~~~~~-a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~  145 (237)
                      +.+|.-||+|.  .+..++..+. .+.  +|+.+|.+++.++. +........+...+.+... +. +   .+       
T Consensus         7 ~mkI~IiGaG~--vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~-------   73 (319)
T 1lld_A            7 PTKLAVIGAGA--VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-E---IC-------   73 (319)
T ss_dssp             CCEEEEECCSH--HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-G---GG-------
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-H---Hh-------
Confidence            46899999855  3333322221 133  89999999866542 2211111111112333332 22 1   11       


Q ss_pred             CceeEEEEeCCCcCcH----------------HHHHHHHccCCCCeEEEE
Q 026547          146 GSFDYAFVDADKVNYW----------------NYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~----------------~~~~~~~~~L~~gG~lv~  179 (237)
                      ...|+|++.......+                +.++.+.+. .|+++++.
T Consensus        74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~  122 (319)
T 1lld_A           74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML  122 (319)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE
Confidence            5789999876433222                556666554 67776654

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=87.38  E-value=3.9  Score=34.80  Aligned_cols=90  Identities=18%  Similarity=0.084  Sum_probs=54.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCC
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPED----GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENE  145 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~  145 (237)
                      ++|+-+|+  |+.+..+++.+...    .+|+..+.+++.++...+.+...+ ..++..+..|+.+  .+..+.++    
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~----   74 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINE----   74 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHH----
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHh----
Confidence            47889988  56666666544322    389999999988776666554432 1347778877643  33333221    


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHH
Q 026547          146 GSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      ...|+|+............+.+.
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~l   97 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEACL   97 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHHH
T ss_pred             hCCCEEEECCCcccChHHHHHHH
Confidence            24899987665433344444443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=87.37  E-value=0.75  Score=37.69  Aligned_cols=92  Identities=13%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             CEEEEEcccccHHHH--HHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-----CcEEEEeccchHHHHHHhhcCCC
Q 026547           72 KKTIEIGVFTGYSLL--LTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-----HKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~--~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .+|+-||+|.=..++  .|++.   +.+|+.++.++  .    +.+++.|+.     ....+....+.......      
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~---g~~V~~~~r~~--~----~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~------   67 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS---GEDVHFLLRRD--Y----EAIAGNGLKVFSINGDFTLPHVKGYRAPEEI------   67 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT---SCCEEEECSTT--H----HHHHHTCEEEEETTCCEEESCCCEESCHHHH------
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCeEEEEEcCc--H----HHHHhCCCEEEcCCCeEEEeeceeecCHHHc------
Confidence            368889987644333  34432   45799999875  2    233444431     11211011111111222      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                       ..+|+|++........+.++.+.+.+.++.+++.
T Consensus        68 -~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  101 (312)
T 3hn2_A           68 -GPMDLVLVGLKTFANSRYEELIRPLVEEGTQILT  101 (312)
T ss_dssp             -CCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEE
T ss_pred             -CCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEE
Confidence             5799999988877788899999999999886654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=87.31  E-value=6.5  Score=31.56  Aligned_cols=87  Identities=15%  Similarity=0.132  Sum_probs=55.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-C---CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhc-
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPE-D---GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKD-  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~-~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-  141 (237)
                      ..++++|-.|++.| .+..+++.+.. +   .+|+.++.+++.++.+.+.+.......++.++.+|..+.  +..+.++ 
T Consensus        31 l~~k~~lVTGas~G-IG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           31 LAKKTVLITGASAG-IGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HTTCEEEEESTTSH-HHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             cCCCEEEEecCCCh-HHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            36789999996554 44555443311 2   399999999988887777776543335688888887542  2222221 


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                      ....+++|+++..+.
T Consensus       110 ~~~~g~iD~lVnnAG  124 (287)
T 3rku_A          110 PQEFKDIDILVNNAG  124 (287)
T ss_dssp             CGGGCSCCEEEECCC
T ss_pred             HHhcCCCCEEEECCC
Confidence            001257999987654

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=87.30  E-value=2.9  Score=34.27  Aligned_cols=81  Identities=15%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC---CcEEEEeccchHH--HHHHhhcCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD---HKINFIESEALSV--LDQLLKDSE  143 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~--~~~~~~~~~  143 (237)
                      .+++||-+| |+|+.+.++++.+- .+.+|++++.++.........+......   .+++++.+|..+.  +...     
T Consensus        24 ~~~~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-----   97 (351)
T 3ruf_A           24 SPKTWLITG-VAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQV-----   97 (351)
T ss_dssp             SCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHH-----
T ss_pred             CCCeEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHH-----
Confidence            567999998 57888877776552 3579999998654322222222221100   3689999998663  2333     


Q ss_pred             CCCceeEEEEeCCC
Q 026547          144 NEGSFDYAFVDADK  157 (237)
Q Consensus       144 ~~~~~D~i~id~~~  157 (237)
                       ...+|.||..+..
T Consensus        98 -~~~~d~Vih~A~~  110 (351)
T 3ruf_A           98 -MKGVDHVLHQAAL  110 (351)
T ss_dssp             -TTTCSEEEECCCC
T ss_pred             -hcCCCEEEECCcc
Confidence             3579999876543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=87.26  E-value=5.9  Score=32.02  Aligned_cols=79  Identities=6%  Similarity=-0.057  Sum_probs=50.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE-eccchHH--HHHHhhcCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI-ESEALSV--LDQLLKDSENE  145 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~--~~~~~~~~~~~  145 (237)
                      ++++||-.|+ +|+.+.++++.+. .+.+|++++.++...+...+.+.... ..+++++ .+|..+.  +..+      .
T Consensus        10 ~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~------~   81 (342)
T 1y1p_A           10 EGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEV------I   81 (342)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTT------T
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHH------H
Confidence            4578998884 6777777665542 25689999998876655544443221 1458888 7887653  1111      2


Q ss_pred             CceeEEEEeCC
Q 026547          146 GSFDYAFVDAD  156 (237)
Q Consensus       146 ~~~D~i~id~~  156 (237)
                      ..+|.|+..+.
T Consensus        82 ~~~d~vih~A~   92 (342)
T 1y1p_A           82 KGAAGVAHIAS   92 (342)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCCCEEEEeCC
Confidence            47899987654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=87.24  E-value=1.7  Score=38.10  Aligned_cols=99  Identities=12%  Similarity=0.136  Sum_probs=56.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHH---hcCC---------CCcEEEEeccchHHHH
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIK---KAGV---------DHKINFIESEALSVLD  136 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~---~~~~---------~~~v~~~~~d~~~~~~  136 (237)
                      ...+|.-||+|  +.+..+|..+.. +.+|+++|.+++.++..++...   +.++         ..++.+ ..|..+.+ 
T Consensus         7 ~~~~I~VIG~G--~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a~-   82 (478)
T 2y0c_A            7 GSMNLTIIGSG--SVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAAV-   82 (478)
T ss_dssp             CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHHH-
T ss_pred             CCceEEEECcC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHHh-
Confidence            45688889885  443333333221 4589999999988776654210   0010         012222 22222221 


Q ss_pred             HHhhcCCCCCceeEEEEeCCC----------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          137 QLLKDSENEGSFDYAFVDADK----------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                               ...|+||+....          ....+.++.+.+.|++|.+++...
T Consensus        83 ---------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           83 ---------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             ---------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             ---------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence                     356899887554          345667777888899988776543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=87.21  E-value=3.1  Score=32.88  Aligned_cols=83  Identities=16%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHH----hhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQL----LKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~----~~~~  142 (237)
                      .++++|-.|++ |..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+.  +..+    .+. 
T Consensus        12 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~-   89 (267)
T 1iy8_A           12 TDRVVLITGGG-SGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER-   89 (267)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            46789999965 445555554442 36799999999887776666565442123588888886542  2221    111 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|+++..+.
T Consensus        90 --~g~id~lv~nAg  101 (267)
T 1iy8_A           90 --FGRIDGFFNNAG  101 (267)
T ss_dssp             --HSCCSEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              257899987654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=87.10  E-value=1  Score=31.65  Aligned_cols=94  Identities=18%  Similarity=0.163  Sum_probs=51.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.+++..+.+++    .+    ..++.+|..+. ..+.+  .....+|
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~~----~~~~~~d~~~~-~~l~~--~~~~~~d   72 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEE-NELLS--LGIRNFE   72 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----TC----SEEEECCTTCH-HHHHT--TTGGGCS
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hC----CEEEEeCCCCH-HHHHh--cCCCCCC
Confidence            457999997  666666655442 24579999998765543221    12    35566776442 11111  0125789


Q ss_pred             EEEEeCCCc-CcHHHHHHHHccCCCCeEEE
Q 026547          150 YAFVDADKV-NYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       150 ~i~id~~~~-~~~~~~~~~~~~L~~gG~lv  178 (237)
                      +|++..... ..........+.+.+. .++
T Consensus        73 ~vi~~~~~~~~~~~~~~~~~~~~~~~-~ii  101 (144)
T 2hmt_A           73 YVIVAIGANIQASTLTTLLLKELDIP-NIW  101 (144)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHTTCS-EEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHcCCC-eEE
Confidence            998766543 2222233333455665 444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=86.97  E-value=1.4  Score=33.99  Aligned_cols=72  Identities=11%  Similarity=0.054  Sum_probs=47.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcE-EEEeccchHHHHHHhhcCCCCCc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKI-NFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .+++||-+|+ +|+.+..+++.+. .+.+|++++.+++..+....        ..+ +++.+|..+.+...      .+.
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~------~~~   84 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHA------FAS   84 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGG------GTT
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHH------HcC
Confidence            5678999984 5666666665542 35799999999876654322        147 88999986322222      367


Q ss_pred             eeEEEEeCC
Q 026547          148 FDYAFVDAD  156 (237)
Q Consensus       148 ~D~i~id~~  156 (237)
                      +|.|+..+.
T Consensus        85 ~D~vi~~ag   93 (236)
T 3e8x_A           85 IDAVVFAAG   93 (236)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999987654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=86.92  E-value=3.4  Score=32.33  Aligned_cols=83  Identities=12%  Similarity=0.108  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc--hH------HHHHHh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA--LS------VLDQLL  139 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~------~~~~~~  139 (237)
                      .+++.+|-.|.+.| .+..+++.+ ..+.+|+.++.+++.++...+.+...+. .++.++..|.  .+      ......
T Consensus        10 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           10 LNDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHH
Confidence            35778999996544 444444443 2367999999999888777666655432 2477788776  22      222222


Q ss_pred             hcCCCCCceeEEEEeCC
Q 026547          140 KDSENEGSFDYAFVDAD  156 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~  156 (237)
                      +.   .+++|+++..+.
T Consensus        88 ~~---~g~id~lv~nAg  101 (252)
T 3f1l_A           88 VN---YPRLDGVLHNAG  101 (252)
T ss_dssp             HH---CSCCSEEEECCC
T ss_pred             Hh---CCCCCEEEECCc
Confidence            22   368999987654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=86.81  E-value=1.7  Score=34.32  Aligned_cols=81  Identities=16%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      +++++|-.|.+. ..+..+++.+ ..+.+|+.++.+++.++.+.+.++..+  .++.++.+|..+.      +....+. 
T Consensus         5 ~~k~vlVTGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   80 (257)
T 3imf_A            5 KEKVVIITGGSS-GMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK-   80 (257)
T ss_dssp             TTCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            567888888654 4455544443 236799999999988887777665443  4688888887542      2222211 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|+++..+.
T Consensus        81 --~g~id~lv~nAg   92 (257)
T 3imf_A           81 --FGRIDILINNAA   92 (257)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              258999987654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=86.68  E-value=1.8  Score=35.53  Aligned_cols=94  Identities=14%  Similarity=0.071  Sum_probs=53.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCC------CCcEEEEeccchHHHHHHhhcCCC
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGV------DHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .+|+-||+|.=.  ..++..+. .+.+|+.++.++  .+.    +++.|+      ...+.+....+.......      
T Consensus         3 mkI~IiGaGaiG--~~~a~~L~~~g~~V~~~~r~~--~~~----i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~------   68 (320)
T 3i83_A            3 LNILVIGTGAIG--SFYGALLAKTGHCVSVVSRSD--YET----VKAKGIRIRSATLGDYTFRPAAVVRSAAEL------   68 (320)
T ss_dssp             CEEEEESCCHHH--HHHHHHHHHTTCEEEEECSTT--HHH----HHHHCEEEEETTTCCEEECCSCEESCGGGC------
T ss_pred             CEEEEECcCHHH--HHHHHHHHhCCCeEEEEeCCh--HHH----HHhCCcEEeecCCCcEEEeeeeeECCHHHc------
Confidence            478889886533  33332221 145899999876  232    333332      112222111111111111      


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ...+|+|++........+.++.+.+.++++.+++.
T Consensus        69 ~~~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~  103 (320)
T 3i83_A           69 ETKPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVL  103 (320)
T ss_dssp             SSCCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEE
T ss_pred             CCCCCEEEEecCCCChHHHHHHHHhhcCCCCEEEE
Confidence            24799999988777777888999999999876553

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=86.51  E-value=6.5  Score=28.15  Aligned_cols=96  Identities=9%  Similarity=-0.011  Sum_probs=51.6

Q ss_pred             ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc
Q 026547           79 VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV  158 (237)
Q Consensus        79 ~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~  158 (237)
                      .|.++...+..+......+|..+|-++...+..+..++..+.. .+.....+..+.+..+..     ..+|+|++|....
T Consensus         9 ~~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~al~~l~~-----~~~dlvilD~~l~   82 (164)
T 3t8y_A            9 HHSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDM-KVVGFAKDGLEAVEKAIE-----LKPDVITMDIEMP   82 (164)
T ss_dssp             ---------------CCEEEEEECSCHHHHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHHH-----HCCSEEEECSSCS
T ss_pred             cccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHhcc-----CCCCEEEEeCCCC
Confidence            4556666555554444568999999999999999988876521 122235566666655432     4699999996543


Q ss_pred             C--cHHHHHHHHccCCCCeEEEEeC
Q 026547          159 N--YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       159 ~--~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .  -.++++.+.+. .+--++++..
T Consensus        83 ~~~g~~l~~~lr~~-~~~~ii~~s~  106 (164)
T 3t8y_A           83 NLNGIEALKLIMKK-APTRVIMVSS  106 (164)
T ss_dssp             SSCHHHHHHHHHHH-SCCEEEEEES
T ss_pred             CCCHHHHHHHHHhc-CCceEEEEec
Confidence            3  34666666543 3344555543

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=86.51  E-value=1.6  Score=36.16  Aligned_cols=79  Identities=11%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCC--CC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPE--DG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDS  142 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~--~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~  142 (237)
                      ..++++||-.| |+|+.+.++++.+..  +. +|++++.++......++.+.    ..+++++.+|..+.  +...    
T Consensus        18 ~~~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~----   88 (344)
T 2gn4_A           18 MLDNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYA----   88 (344)
T ss_dssp             TTTTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHH----
T ss_pred             hhCCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHH----
Confidence            34568899888 567777777665532  33 89999998876655544432    24689999998763  2233    


Q ss_pred             CCCCceeEEEEeCCC
Q 026547          143 ENEGSFDYAFVDADK  157 (237)
Q Consensus       143 ~~~~~~D~i~id~~~  157 (237)
                        ...+|.||..+..
T Consensus        89 --~~~~D~Vih~Aa~  101 (344)
T 2gn4_A           89 --LEGVDICIHAAAL  101 (344)
T ss_dssp             --TTTCSEEEECCCC
T ss_pred             --HhcCCEEEECCCC
Confidence              3578999877643

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=86.48  E-value=5.3  Score=31.79  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=48.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchH-HHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRET-YEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      +++++|-.|++ |..+..+++.+. .+.+|+.++.+++. .+...+.+...+  .++.++.+|..+.      +....+.
T Consensus        28 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            56788888865 445555554442 36799999987643 444444455444  3588888886442      1211111


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+.+|+++..+.
T Consensus       105 ---~g~iD~lv~~Ag  116 (283)
T 1g0o_A          105 ---FGKLDIVCSNSG  116 (283)
T ss_dssp             ---HSCCCEEEECCC
T ss_pred             ---cCCCCEEEECCC
Confidence               257899987654

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=86.47  E-value=0.42  Score=38.36  Aligned_cols=37  Identities=22%  Similarity=0.442  Sum_probs=25.4

Q ss_pred             CceeEEEEeCCCc----CcHHHHHH----------HHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKV----NYWNYHER----------LMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~----~~~~~~~~----------~~~~L~~gG~lv~~~~  182 (237)
                      ++||+||++...+    ++++.-+-          ....|+|||.+++-..
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aY  260 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAY  260 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEEC
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEee
Confidence            8999999997533    23333222          2268999999998654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=86.45  E-value=3.6  Score=32.05  Aligned_cols=84  Identities=13%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhc-CCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKD-SENE  145 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~  145 (237)
                      .+++||-.|+. |..+..+++.+. .+.+|+.++.+++..+...+.++..+  .++.++.+|..+.  +..+.++ ....
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46789988854 555665555442 36799999999877766666665544  3588899887642  2221110 0002


Q ss_pred             CceeEEEEeCC
Q 026547          146 GSFDYAFVDAD  156 (237)
Q Consensus       146 ~~~D~i~id~~  156 (237)
                      +++|.++..+.
T Consensus        89 ~~id~vi~~Ag   99 (260)
T 3awd_A           89 GRVDILVACAG   99 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47899987653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=86.41  E-value=4.5  Score=32.16  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=52.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      +++.+|-.|++ |..+..+++.+. .+.+|+.++.+++.++...+.++..+  .++.++.+|..+.      +....+. 
T Consensus        21 ~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   96 (277)
T 2rhc_B           21 DSEVALVTGAT-SGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER-   96 (277)
T ss_dssp             TSCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH-
Confidence            56789999965 445555554432 36799999999887776666665544  3588888886542      2222222 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|+++..+.
T Consensus        97 --~g~iD~lv~~Ag  108 (277)
T 2rhc_B           97 --YGPVDVLVNNAG  108 (277)
T ss_dssp             --TCSCSEEEECCC
T ss_pred             --hCCCCEEEECCC
Confidence              357999987653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=86.30  E-value=3.3  Score=32.06  Aligned_cols=83  Identities=12%  Similarity=0.082  Sum_probs=52.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc--hH------HHHHHh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA--LS------VLDQLL  139 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~------~~~~~~  139 (237)
                      .+++++|-.|++. ..+..+++.+. .+.+|+.++.+++.++...+.++..+. .++.++..|.  .+      ......
T Consensus        12 l~~k~vlITGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           12 LKGRVILVTGAAR-GIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQ-PQPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTTCEEEESSTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-CCceEEEeccccCCHHHHHHHHHHHH
Confidence            3567889888754 44555544442 367999999999988888887776653 3466666655  21      222222


Q ss_pred             hcCCCCCceeEEEEeCC
Q 026547          140 KDSENEGSFDYAFVDAD  156 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~  156 (237)
                      +.   .+++|+++..+.
T Consensus        90 ~~---~g~id~lv~nAg  103 (247)
T 3i1j_A           90 HE---FGRLDGLLHNAS  103 (247)
T ss_dssp             HH---HSCCSEEEECCC
T ss_pred             Hh---CCCCCEEEECCc
Confidence            11   258999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	2e-67
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	3e-51
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	2e-37
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	4e-10
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	5e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	6e-06
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	2e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	2e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	4e-04
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.003

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  205 bits (522), Expect = 2e-67
 Identities = 139/226 (61%), Positives = 181/226 (80%), Gaps = 1/226 (0%)

Query: 12  KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA 71
           K LLQS+ LY+YILETSV+PRE E +KE+R+VTA HP  +M+T+ D GQ ++MLLKL+NA
Sbjct: 1   KSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINA 60

Query: 72  KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA 131
           K T+EIGV+TGYSLL TAL IPEDG+I+A+D+N+E YE+GLPVIKKAGVDHKI+F E  A
Sbjct: 61  KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA 120

Query: 132 LSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMS 191
           L VLD+++KD +N GS+D+ FVDADK NY NYH+RL+ L+KVGG+  YDNTLW G+V   
Sbjct: 121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAP 180

Query: 192 EEQVPD-HLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
            +     ++R  R   L+LN++LA DPRI++  +P+GDGITIC RI
Sbjct: 181 PDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (414), Expect = 3e-51
 Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 8/221 (3%)

Query: 16  QSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTI 75
           +   L++Y+L  S+  RE   L+ +R +T + P+       +  QL+A L +L+ AKK +
Sbjct: 7   EDSRLWQYLLSRSM--REHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKAL 64

Query: 76  EIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL 135
           ++G FTGYS L  AL +P DG+++  +V+ +  E+G P+ ++A  +HKI+     AL  L
Sbjct: 65  DLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL 124

Query: 136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQV 195
           D+LL  +   G+FD A VDADK N   Y+ER ++LL+ GGI      LW G V    +  
Sbjct: 125 DELL-AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGD 183

Query: 196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI 236
                   +   +LN  +  D R+ +S +PLGDG+T+ ++I
Sbjct: 184 VAA-----ECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (322), Expect = 2e-37
 Identities = 41/217 (18%), Positives = 89/217 (41%), Gaps = 16/217 (7%)

Query: 18  EELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEI 77
           + + RY+ + +  P +P+ + E  D         M+     GQ+M  +++  +    +E+
Sbjct: 5   QRILRYVQQNA-KPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLEL 63

Query: 78  GVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ 137
           G + GYS +  A  +    +++ +++N +   I   ++  AG+  K+  +   +  ++ Q
Sbjct: 64  GAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ 123

Query: 138 LLKDSENEGSFDYAFVDADKVNYWNYHERL--MKLLKVGGIAVYDNTLWGGTVAMSEEQV 195
            LK   +  + D  F+D  K  Y      L    LL+ G + + DN +  GT        
Sbjct: 124 -LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLA--- 179

Query: 196 PDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITI 232
             ++R         +          L ++ + DG+  
Sbjct: 180 --YVR-------GSSSFECTHYSSYLEYMKVVDGLEK 207

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 55.9 bits (134), Expect = 4e-10
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 56  PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTA---LTIPEDGQIMAIDVNRETYEIGL 112
           PD   +   +L  +  +  +E+GV+ G SL         +  D Q++ ID +    +I  
Sbjct: 66  PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-- 123

Query: 113 PVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHER-LMKLL 171
                      +  I        D    +   E +    F+D    N +N  +  +  LL
Sbjct: 124 -------PASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLL 176

Query: 172 KVGG-IAVYDNTLWGG 186
           + G    + D   +  
Sbjct: 177 EEGDYFIIEDMIPYWY 192

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 9/132 (6%)

Query: 49  RAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETY 108
              +    DA Q++     +    + +E G  +G   L     +   GQ+++ +   +  
Sbjct: 76  GPQVIYPKDAAQIV-HEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA 134

Query: 109 EIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM 168
           E     +         N+       V+  L      +GS D A +D      W   + + 
Sbjct: 135 EHARRNVSGCYGQPPDNWRL-----VVSDLADSELPDGSVDRAVLDML--APWEVLDAVS 187

Query: 169 KLLKVGG-IAVY 179
           +LL  GG + VY
Sbjct: 188 RLLVAGGVLMVY 199

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 6e-06
 Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 7/128 (5%)

Query: 56  PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI 115
           P    ++  ++ +      +E G  +G   L  +  +   G++++ +V ++ +++     
Sbjct: 84  PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 143

Query: 116 KKAGVDHKINFIESEALSVLDQL-----LKDSENEGSFDYAFVDADKVNYWNYHERLMKL 170
           K      K++ +E    +V           +     +FD   +D   +N           
Sbjct: 144 KHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDM--LNPHVTLPVFYPH 201

Query: 171 LKVGGIAV 178
           LK GG+  
Sbjct: 202 LKHGGVCA 209

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 21/171 (12%), Positives = 56/171 (32%), Gaps = 12/171 (7%)

Query: 11  SKGLLQSEELYRYILETSVYPRE---PEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLK 67
             G++++++++  +L T    R      +       +      + +    A  L  +  +
Sbjct: 17  KNGIIKTDKVFEVMLAT---DRSHYAKCNPYMDSPQSIGFQATISAPHMHAYALELLFDQ 73

Query: 68  LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI 127
           L    K +++G  +G      A  +   G+++ ID  +E  +  +  ++K       +  
Sbjct: 74  LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR 133

Query: 128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAV 178
               +        +     +                 + L+  LK GG  +
Sbjct: 134 VQLVVGDGRMGYAEEAPYDAIHVGAA------APVVPQALIDQLKPGGRLI 178

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 27/188 (14%)

Query: 43  VTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAID 102
                P     TA +   L+  L +       +++G  TG    +T        ++ AID
Sbjct: 9   KNPSVPGP---TAMEVRCLIMCLAEPGKNDVAVDVGCGTGG---VTLELAGRVRRVYAID 62

Query: 103 VNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWN 162
            N E        +++ G+   +  +E +A   L ++          D A V         
Sbjct: 63  RNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-------PDIDIAVVGGSGGELQE 115

Query: 163 YHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLS 222
               +   LK GG  +          A+  E   + +   R    D+N +      + ++
Sbjct: 116 ILRIIKDKLKPGGRIIV--------TAILLETKFEAMECLRDLGFDVNIT-----ELNIA 162

Query: 223 H-VPLGDG 229
               L  G
Sbjct: 163 RGRALDRG 170

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 11/123 (8%)

Query: 56  PDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI 115
            DA   + M   L      +E+GV +G         +   G +  ++ + +  +  +  +
Sbjct: 72  IDASY-IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL 130

Query: 116 KKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGG 175
            +      +    S+    +              Y  V AD  + WN+ +++  ++K G 
Sbjct: 131 SEFYDIGNVRTSRSDIADFISD----------QMYDAVIADIPDPWNHVQKIASMMKPGS 180

Query: 176 IAV 178
           +A 
Sbjct: 181 VAT 183

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 15/180 (8%)

Query: 16  QSEELYRYILETSV-YPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNA--K 72
             E            Y     HL+ +          M          M  L    ++   
Sbjct: 5   PGENCSPAWGAAPAAYDAADTHLRILGK------PVMERWETP---YMHALAAAASSKGG 55

Query: 73  KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL 132
           + +E+G     +   + +      +   I+ N   ++       +            E +
Sbjct: 56  RVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 113

Query: 133 SVLDQLLK-DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMS 191
           +        D     ++  +        +        +LLK GG+  Y N    G +  S
Sbjct: 114 APTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKS 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	100.0
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.82
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.76
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.74
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.73
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.73
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.72
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.72
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.72
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.7
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.68
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.67
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.66
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.65
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.65
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.65
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.64
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.64
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.63
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.63
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.62
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.62
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.62
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.62
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.61
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.6
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.6
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.59
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.59
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.58
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.58
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.58
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.57
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.56
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.55
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.54
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.54
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.54
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.54
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.53
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.53
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.52
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.52
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.52
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.51
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.51
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.51
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.49
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.47
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.46
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.44
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.44
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.43
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.41
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.41
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.4
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.39
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.38
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.38
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.37
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.37
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.37
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.37
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.36
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.31
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.31
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.29
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.29
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.27
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.19
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.14
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.14
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.13
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.11
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.07
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.05
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.03
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.93
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.85
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.82
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.77
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.76
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.73
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.7
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.64
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.64
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.57
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.56
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.49
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.43
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.38
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.35
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.2
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.98
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.9
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.87
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.85
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.82
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.79
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.7
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.67
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.59
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.58
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.5
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.39
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.14
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.98
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.95
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.94
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.92
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.86
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.82
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.68
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.57
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.47
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.34
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.25
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.2
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.18
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.15
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.06
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.02
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.89
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.8
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.59
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.44
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.36
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.13
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.11
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	94.98
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	94.88
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.73
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.33
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.19
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.15
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.9
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.42
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.19
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.19
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.16
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.07
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.78
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.75
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.75
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.74
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	92.6
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.04
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	91.97
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	91.93
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.91
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.74
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.39
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.96
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.88
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.88
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.86
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.74
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	90.68
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.46
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.17
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.14
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	90.06
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	89.77
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	89.7
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	89.66
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.58
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.56
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.43
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	89.01
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	88.97
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.94
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	88.58
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	88.28
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.23
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.19
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.01
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.99
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.8
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.78
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	87.77
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.49
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	87.36
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	87.32
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	87.13
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	86.98
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	86.47
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.1
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.08
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	86.04
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.02
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.86
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	85.66
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.42
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	85.15
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	84.88
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	84.7
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.49
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.46
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.38
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	84.18
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	84.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.92
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.38
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	83.18
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	82.89
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	82.81
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	82.79
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.72
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	82.67
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.37
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	82.26
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	82.08
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	82.06
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.85
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	81.76
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	81.73
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	81.58
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	81.52
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	81.36
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	81.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.18
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	81.13
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	81.1
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	81.07
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	80.75
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	80.75
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	80.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	80.71
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	80.5
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	80.2
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	80.12
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.06

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=7.8e-45  Score=290.09  Aligned_cols=226  Identities=62%  Similarity=1.023  Sum_probs=205.8

Q ss_pred             CCCCCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhh
Q 026547           12 KGLLQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALT   91 (237)
Q Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~   91 (237)
                      |.+..++.+++|+.+++..|++++.+.++++.+.+++++.|.+++.++++|..++...++++|||||+++|+++++||++
T Consensus         1 k~~~~~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~a   80 (227)
T d1susa1           1 KSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALA   80 (227)
T ss_dssp             CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhh
Confidence            34667899999999988889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccC
Q 026547           92 IPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLL  171 (237)
Q Consensus        92 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L  171 (237)
                      ++++++|+++|.+++..+.|+++++++|+.++++++.+++.+.++.+.+.....++||+||+|+++.++..+++.+.++|
T Consensus        81 l~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll  160 (227)
T d1susa1          81 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV  160 (227)
T ss_dssp             SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHB
T ss_pred             CCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhc
Confidence            99889999999999999999999999999999999999999999988654333578999999999999999999999999


Q ss_pred             CCCeEEEEeCcCCCCcccCCCCCCCc-cccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEcC
Q 026547          172 KVGGIAVYDNTLWGGTVAMSEEQVPD-HLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRIF  237 (237)
Q Consensus       172 ~~gG~lv~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~~  237 (237)
                      +|||+|++||++|+|.+.+|...... ..+.....+++|++.+..+|+++++++|++||+.|++|.+
T Consensus       161 ~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~K~~  227 (227)
T d1susa1         161 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRIK  227 (227)
T ss_dssp             CTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECSTTCEEEECBCC
T ss_pred             CCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecCCeeEEEEECC
Confidence            99999999999999999887655322 2233456799999999999999999999999999999975

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-42  Score=274.25  Aligned_cols=214  Identities=36%  Similarity=0.623  Sum_probs=197.3

Q ss_pred             CCcHHHHHHHhhccCCCCCcHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026547           15 LQSEELYRYILETSVYPREPEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (237)
Q Consensus        15 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~   94 (237)
                      +.++++++|+.+++  +.+++.++++++.+.+++++.|.+++.++++|..++...++++|||||||+|++++++|+++++
T Consensus         6 ~~~~~l~~Y~~~~~--~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~   83 (219)
T d2avda1           6 PEDSRLWQYLLSRS--MREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPA   83 (219)
T ss_dssp             CTTSHHHHHHHHTT--CCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCT
T ss_pred             CCcHHHHHHHHHhC--CCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCC
Confidence            35688999999985  4667899999999998888889999999999999999999999999999999999999999988


Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG  174 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g  174 (237)
                      +++|+++|.+++..+.|+++++.+|+.++++++.||+.+.++.+... ...++||+||+|+++..+..+++.+.++|+||
T Consensus        84 ~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~-~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G  162 (219)
T d2avda1          84 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPG  162 (219)
T ss_dssp             TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE
T ss_pred             CceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhh-cccCCccEEEEeCCHHHHHHHHHHHHHHhcCC
Confidence            89999999999999999999999999999999999999998876544 22478999999999999999999999999999


Q ss_pred             eEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecCCceEEEEEc
Q 026547          175 GIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLGDGITICWRI  236 (237)
Q Consensus       175 G~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~Gl~i~~~~  236 (237)
                      |+|++||++|+|.+.++...     +..+..+++|++.+.++|+++++++|+++|+.+++|.
T Consensus       163 Gvii~Dn~l~~G~v~~~~~~-----d~~~~~ir~~~~~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         163 GILAVLRVLWRGKVLQPPKG-----DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             EEEEEECCSGGGGGGSCCTT-----CHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             cEEEEeCCcccCcccCcccC-----CHHHHHHHHHHHHHHhCCCEEEEEeecCCeeEEEEeC
Confidence            99999999999999887654     4567889999999999999999999999999999984

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.4e-33  Score=220.04  Aligned_cols=199  Identities=20%  Similarity=0.353  Sum_probs=168.7

Q ss_pred             CcHHHHHHHhhccCCCCC-cHHHHHHHHHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC
Q 026547           16 QSEELYRYILETSVYPRE-PEHLKEIRDVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE   94 (237)
Q Consensus        16 ~~~~~~~y~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~   94 (237)
                      -++++++|+.+++ .+++ ...++.+++++.+..++ |.+++.++++|..++...+|++|||||||+|++|++||+++++
T Consensus         3 ~~~~~~~yv~~~~-~~~~p~~vl~~~~~~~~~~~~~-m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~   80 (214)
T d2cl5a1           3 KEQRILRYVQQNA-KPGDPQSVLEAIDTYCTQKEWA-MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQP   80 (214)
T ss_dssp             HHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHTCCC-CSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCT
T ss_pred             HHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCc-cccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCC
Confidence            4689999999997 4544 46788888888776544 7899999999999999999999999999999999999999987


Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHH--HHHHHccCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNY--HERLMKLLK  172 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~--~~~~~~~L~  172 (237)
                      +++|+++|.++++++.|+++++..|+.++|+++.||+.+.++.+.+. ....+||+||+|+.+..+...  +....++|+
T Consensus        81 ~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~-~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLk  159 (214)
T d2cl5a1          81 GARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLR  159 (214)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHH-SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEE
T ss_pred             ccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhc-ccccccceeeecccccccccHHHHHHHhCccC
Confidence            89999999999999999999999999999999999999998877543 224789999999998887654  555668999


Q ss_pred             CCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEe-------eecCCceEEEEEc
Q 026547          173 VGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSH-------VPLGDGITICWRI  236 (237)
Q Consensus       173 ~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------lp~~~Gl~i~~~~  236 (237)
                      |||+|++||++|+|.                   .++.++++..+++....       +|+++|+.++..+
T Consensus       160 pGGvIv~Ddvl~~g~-------------------~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         160 KGTVLLADNVIVPGT-------------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             EEEEEEESCCCCCCC-------------------HHHHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             CCcEEEEeCcCCCCC-------------------hHHHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            999999999999872                   23556667777776554       6789999998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.82  E-value=9.8e-20  Score=140.38  Aligned_cols=120  Identities=22%  Similarity=0.210  Sum_probs=104.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ...+...++.......++.+|||+|||+|..++.+|+.   .++|+++|+++++++.|++++++.|+.++++++++|+.+
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            45556566666678888999999999999999999875   459999999999999999999999998899999999988


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+..       ...||+||++....+..++++.+.+.|+|||.+++....
T Consensus        94 ~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          94 ALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cccc-------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            7543       489999999998888899999999999999999987543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3.5e-19  Score=142.90  Aligned_cols=124  Identities=18%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      +..+.....+...+...++.+|||||||+|..+..+++..  +.+|+|||+++.+++.|+++.+..|+.++++++++|+.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~   93 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA   93 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence            3456667777777788889999999999999999998864  46999999999999999999999999999999999998


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      +..+        .++||+|++...   ..+...+++++.+.|||||.+++.+..+..
T Consensus        94 ~~~~--------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~  142 (245)
T d1nkva_          94 GYVA--------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  142 (245)
T ss_dssp             TCCC--------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             hccc--------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccC
Confidence            7532        589999987643   345789999999999999999998876544

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=9.4e-18  Score=135.20  Aligned_cols=131  Identities=17%  Similarity=0.218  Sum_probs=109.6

Q ss_pred             HHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--C
Q 026547           42 DVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--G  119 (237)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~  119 (237)
                      +++....+..-.+.+....++..++...++.+|||+|||+|..+++||+.+.++++|+++|+++++++.|+++++..  +
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~  147 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ  147 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC
Confidence            34444444545678899999999999999999999999999999999999877899999999999999999999875  3


Q ss_pred             CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          120 VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       120 ~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..++++++++|+.+.       +...++||.||+|..  +..++++.+.+.|||||.+++-.
T Consensus       148 ~~~nv~~~~~d~~~~-------~~~~~~fDaV~ldlp--~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         148 PPDNWRLVVSDLADS-------ELPDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CCTTEEEECSCGGGC-------CCCTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCceEEEEecccccc-------cccCCCcceEEEecC--CHHHHHHHHHhccCCCCEEEEEe
Confidence            456899999998763       123589999999864  44678999999999999998754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=9.9e-18  Score=135.64  Aligned_cols=129  Identities=20%  Similarity=0.307  Sum_probs=109.2

Q ss_pred             HHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC
Q 026547           43 VTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH  122 (237)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  122 (237)
                      ++....+..-.+.+....++..++...++.+|||+|||+|+.+.++|+.+.++++|+++|.++++++.|+++++..++.+
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~  155 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE  155 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGG
T ss_pred             HHhhccCCccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcccc
Confidence            33344444445678889999999999999999999999999999999998778999999999999999999999999988


Q ss_pred             cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++.+..+|..+..        ....||.||+|..  +.+++++.+.+.|||||.+++..
T Consensus       156 ~v~~~~~d~~~~~--------~~~~~D~V~~d~p--~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         156 RVTIKVRDISEGF--------DEKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             GEEEECCCGGGCC--------SCCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEeccccccc--------cccceeeeEecCC--CHHHHHHHHHhhcCCCCEEEEEe
Confidence            8999999875532        2578999999864  45688999999999999999753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=2.1e-18  Score=138.17  Aligned_cols=117  Identities=13%  Similarity=0.236  Sum_probs=93.3

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +.+....++-..+...++.+|||+|||+|..+.++|+++.+.++|+++|.++++++.|++++++.+...++++.++|..+
T Consensus        69 iypkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          69 ISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD  148 (250)
T ss_dssp             ------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT
T ss_pred             cCHHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeec
Confidence            44556666667778889999999999999999999998866899999999999999999999998777789999999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .++        ..+||.||+|..  ....+++.+.+.|||||++++.
T Consensus       149 ~~~--------~~~fD~V~ld~p--~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         149 FIS--------DQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             CCC--------SCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEE
T ss_pred             ccc--------cceeeeeeecCC--chHHHHHHHHHhcCCCceEEEE
Confidence            642        478999999864  3457899999999999999985

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.73  E-value=2.1e-17  Score=131.33  Aligned_cols=115  Identities=17%  Similarity=0.239  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH
Q 026547           57 DAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD  136 (237)
Q Consensus        57 ~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (237)
                      ....+|...+...++.+|||||||+|..+..+++..   ++|+|||+|+.+++.|++++...++. ++.++++|+.+. +
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P   77 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-c
Confidence            345677788888899999999999999999999863   58999999999999999999988874 599999998774 1


Q ss_pred             HHhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          137 QLLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                            +.+++||+|++....   .+...+++++.++|+|||.+++.+.
T Consensus        78 ------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          78 ------FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             ------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence                  236899999987543   4578899999999999999888654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=1.4e-17  Score=130.68  Aligned_cols=116  Identities=21%  Similarity=0.341  Sum_probs=95.9

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +.|.....+..++...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.|+++++..+.. ++.++++|+.+
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~  137 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYY  137 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGG
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHH
Confidence            34555555556677889999999999999999999998877899999999999999999999998875 58889999877


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .++.       .++||.|++.+...+.+   +.+.+.|+|||.+++-
T Consensus       138 ~~~~-------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         138 GVPE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCGG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             cccc-------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            5443       37899999988766654   3466789999999873

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.8e-17  Score=136.25  Aligned_cols=132  Identities=15%  Similarity=0.210  Sum_probs=105.6

Q ss_pred             HHHhhCCCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---
Q 026547           42 DVTADHPRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---  118 (237)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---  118 (237)
                      +++....+..-.+.+....++-.++.+.++.+|||+|||+|+.+++||+.+.++++|+++|+++++++.|++++++.   
T Consensus        70 d~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~  149 (324)
T d2b25a1          70 DYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS  149 (324)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh
Confidence            44444555545577888888889999999999999999999999999999877899999999999999999999875   


Q ss_pred             -------CCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          119 -------GVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       119 -------~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                             +..+++++.++|+.+....+.     ..+||.||+|...  ...+++.+.+.|||||.+++-
T Consensus       150 ~~~~~~~~~~~nv~~~~~di~~~~~~~~-----~~~fD~V~LD~p~--P~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         150 WKLSHVEEWPDNVDFIHKDISGATEDIK-----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             HTTTCSSCCCCCEEEEESCTTCCC------------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred             hhhhhhhccccceeEEecchhhcccccC-----CCCcceEeecCcC--HHHHHHHHHHhccCCCEEEEE
Confidence                   234679999999877544331     4689999998643  346789999999999999874

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.72  E-value=4.3e-17  Score=128.96  Aligned_cols=109  Identities=13%  Similarity=0.195  Sum_probs=91.0

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .++...++.+|||||||+|..+..+++.   ..+|+|+|+++.+++.|+++++..+. ++++++++|+.+..       +
T Consensus         9 ~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~-------~   77 (231)
T d1vl5a_           9 QIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMP-------F   77 (231)
T ss_dssp             HHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCC-------S
T ss_pred             HhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccc-cccccccccccccc-------c
Confidence            4567788899999999999999999976   45999999999999999999998886 46999999987751       2


Q ss_pred             CCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          144 NEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       144 ~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..++||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus        78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            3589999998754   345678999999999999999986543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.70  E-value=4.2e-17  Score=133.20  Aligned_cols=109  Identities=13%  Similarity=0.182  Sum_probs=93.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+.++++..  +.+|+|||+++.+++.|+++....|+.++++++++|+.+..       +..++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-------~~~~s  135 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-------CEDNS  135 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-------SCTTC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccccc-------ccccc
Confidence            4577899999999999999999864  46999999999999999999999999999999999997751       23589


Q ss_pred             eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCC
Q 026547          148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWG  185 (237)
Q Consensus       148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  185 (237)
                      ||+|++...   ..+...+++++.++|+|||.+++.+....
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  176 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  176 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence            999987643   34567899999999999999999876543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.7e-17  Score=127.32  Aligned_cols=116  Identities=19%  Similarity=0.287  Sum_probs=92.9

Q ss_pred             ccHHH-HHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC----CcEEEE
Q 026547           54 TAPDA-GQLMAMLL-KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD----HKINFI  127 (237)
Q Consensus        54 ~~~~~-~~~l~~l~-~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~----~~v~~~  127 (237)
                      +.|.. +.++..|. ...++.+|||||||+|+.+..+|+...+.++|+++|+++++++.|++++++.+..    +++.++
T Consensus        58 s~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~  137 (224)
T d1i1na_          58 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  137 (224)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             hhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence            34544 44444443 4567789999999999999999988766889999999999999999999887653    468999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .+|+.+..+.       .++||.|++.+.....+   +.+.+.|+|||.+|+
T Consensus       138 ~gD~~~~~~~-------~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         138 VGDGRMGYAE-------EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLIL  179 (224)
T ss_dssp             ESCGGGCCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             Eeecccccch-------hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEE
Confidence            9998775443       37999999998766544   456789999999987

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=1.6e-16  Score=127.58  Aligned_cols=114  Identities=19%  Similarity=0.248  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           57 DAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        57 ~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      .+.-.+..+.. ..++++|||+|||+|..++.+++.   +.+|+++|+++.+++.|+++.+.+++.  ++++++|..+..
T Consensus       106 TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~  180 (254)
T d2nxca1         106 TTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAAL  180 (254)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHG
T ss_pred             hhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccccc
Confidence            34444555544 346789999999999999988874   569999999999999999999999874  578899886653


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +        .++||+|+.+.......++++.+.+.|+|||.+++++++
T Consensus       181 ~--------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         181 P--------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             G--------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             c--------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            3        379999998876666778889999999999999998664

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.67  E-value=7.8e-16  Score=121.48  Aligned_cols=117  Identities=13%  Similarity=0.147  Sum_probs=93.3

Q ss_pred             HHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           59 GQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        59 ~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      .+.+..++.  ..++.+|||+|||+|..+..+++... ++.+|+|+|+|+.|++.|+++++..+...++++..+|..+. 
T Consensus        26 ~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-  104 (225)
T d1im8a_          26 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-  104 (225)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-
T ss_pred             HHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-
Confidence            334444433  34567999999999999999998753 47899999999999999999999888777889999888665 


Q ss_pred             HHHhhcCCCCCceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          136 DQLLKDSENEGSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                              ..+.+|+|++...     ..+...+++++.+.|+|||.+++.+...
T Consensus       105 --------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         105 --------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             --------CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             --------ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence                    2478899887532     2345689999999999999999976553

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.66  E-value=2.4e-16  Score=123.33  Aligned_cols=116  Identities=20%  Similarity=0.305  Sum_probs=96.8

Q ss_pred             CccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc
Q 026547           51 MMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE  130 (237)
Q Consensus        51 ~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (237)
                      ...+.|..-..+..++...++.+|||||||+||.+..+++..  +++|+++|.+++.++.|++++++.|.. ++.++++|
T Consensus        59 ~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd  135 (215)
T d1jg1a_          59 QTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGD  135 (215)
T ss_dssp             CEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESC
T ss_pred             hhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECc
Confidence            345667776667777889999999999999999999988764  367999999999999999999999974 69999999


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..+-++.       .++||.|++.+.....++.   +...|++||.+|+
T Consensus       136 ~~~g~~~-------~~pfD~Iiv~~a~~~ip~~---l~~qL~~gGrLv~  174 (215)
T d1jg1a_         136 GSKGFPP-------KAPYDVIIVTAGAPKIPEP---LIEQLKIGGKLII  174 (215)
T ss_dssp             GGGCCGG-------GCCEEEEEECSBBSSCCHH---HHHTEEEEEEEEE
T ss_pred             cccCCcc-------cCcceeEEeecccccCCHH---HHHhcCCCCEEEE
Confidence            9876543       3899999998876665533   5678999999987

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=6.4e-16  Score=123.55  Aligned_cols=102  Identities=18%  Similarity=0.298  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++++|||||||+|..+..+++.   +.+|+|||+|+.+++.|++++...+.  +++++++|+.++.        ..++|
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~--------~~~~f  106 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--------FKNEF  106 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--------CCSCE
T ss_pred             CCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhcc--------ccccc
Confidence            35678999999999999999984   56999999999999999999988775  5999999998762        14789


Q ss_pred             eEEEEeCCC------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADK------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++....      .+...+++.+.+.|+|||+++++-..
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            999985321      22457899999999999999986443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.65  E-value=5.3e-16  Score=119.87  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=89.7

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSVLDQ  137 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~  137 (237)
                      .++|...+...++++|||+|||+|..++.+++..   .+|+++|+++.+++.++++++..++.+ +++++.+|..+.++ 
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~-  116 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK-  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT-
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhc-
Confidence            3445455566778999999999999999999864   489999999999999999999988864 68999999876532 


Q ss_pred             HhhcCCCCCceeEEEEeCCCcC----cHHHHHHHHccCCCCeEEEE
Q 026547          138 LLKDSENEGSFDYAFVDADKVN----YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~~~----~~~~~~~~~~~L~~gG~lv~  179 (237)
                             .++||+|+++.....    ...+++.+.+.|+|||.+++
T Consensus       117 -------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         117 -------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             -------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence                   479999999865333    34678888899999998866

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.65  E-value=3.7e-16  Score=127.54  Aligned_cols=108  Identities=18%  Similarity=0.264  Sum_probs=91.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||+|||+|..+..++...+.+.+|+|+|+++.+++.|++++...+.  +++++++|+.+.-        ..+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~--------~~~   93 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE--------LND   93 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC--------CSS
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccc--------ccC
Confidence            456889999999999999999999888678999999999999999999988775  6899999987641        146


Q ss_pred             ceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          147 SFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       147 ~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +||+|++...   ..+...+++++.+.|+|||.+++.+..|
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            8999998764   3456789999999999999998877654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=7.6e-16  Score=125.98  Aligned_cols=107  Identities=10%  Similarity=0.121  Sum_probs=91.8

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +.+.++.+|||||||.|..++++|+..  +++|+|+++|++.++.+++..+..|+.+++++...|....          .
T Consensus        57 l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~----------~  124 (291)
T d1kpia_          57 LNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----------D  124 (291)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----------C
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc----------c
Confidence            346678899999999999999999875  4699999999999999999999999999999999886432          5


Q ss_pred             CceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          146 GSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       146 ~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ++||.|+.-..-            .++..+|+.+.++|+|||.++++.+..
T Consensus       125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence            899999865322            346899999999999999999998764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.64  E-value=1.2e-15  Score=121.88  Aligned_cols=109  Identities=15%  Similarity=0.147  Sum_probs=86.2

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH
Q 026547           59 GQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD  136 (237)
Q Consensus        59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (237)
                      ..++..++..  .++++|||+|||+|..+..+++.   +.+|+|||+|+.+++.|++++...+.  +++++++|+.++. 
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~-   97 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN-   97 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC-
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhc-
Confidence            3444444432  35679999999999999999985   45999999999999999999888775  5899999997752 


Q ss_pred             HHhhcCCCCCceeEEEEeCC-------CcCcHHHHHHHHccCCCCeEEEEe
Q 026547          137 QLLKDSENEGSFDYAFVDAD-------KVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                             ..++||+|++-..       ..+...+++.+.++|+|||.++++
T Consensus        98 -------~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          98 -------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                   1478999987432       123456899999999999999975

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.63  E-value=1e-15  Score=124.69  Aligned_cols=106  Identities=10%  Similarity=0.139  Sum_probs=90.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++.+|||||||.|..+.++++..  +.+|+|||+|++.++.|++.+++.|+..++.+...|..+.          .+
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----------~~  116 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----------AE  116 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----------CC
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----------cc
Confidence            35678899999999999999998765  4699999999999999999999999988899888887654          48


Q ss_pred             ceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          147 SFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       147 ~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      +||.|+.-..     ..++..+|+++.++|+|||.++++.+..
T Consensus       117 ~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~  159 (280)
T d2fk8a1         117 PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  159 (280)
T ss_dssp             CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence            9999986543     2456889999999999999999987543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.63  E-value=1.3e-15  Score=113.17  Aligned_cols=112  Identities=19%  Similarity=0.215  Sum_probs=91.1

Q ss_pred             HHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhh
Q 026547           61 LMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLK  140 (237)
Q Consensus        61 ~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  140 (237)
                      ++..|....++++|||+|||+|..++.++.+-  ..+|+++|.++.+++.++++++..+..++++++++|+.+.++..  
T Consensus         5 ~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~--   80 (152)
T d2esra1           5 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL--   80 (152)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB--
T ss_pred             HHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc--
Confidence            34444445678999999999999999877642  24999999999999999999999999899999999998887654  


Q ss_pred             cCCCCCceeEEEEeCCC--cCcHHHHHHHH--ccCCCCeEEEEe
Q 026547          141 DSENEGSFDYAFVDADK--VNYWNYHERLM--KLLKVGGIAVYD  180 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~  180 (237)
                          ..+||+||+|.+-  ......++.+.  ++|++||+|+++
T Consensus        81 ----~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 ----TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             ----CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ----ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence                5889999999752  22445666654  579999999986

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.62  E-value=2.2e-15  Score=117.09  Aligned_cols=104  Identities=14%  Similarity=0.271  Sum_probs=88.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +...|||||||+|..++.+|+..| +..++|+|+++.++..+.+..++.++. ++.++++|+.+.+..+     ..+++|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~-----~~~~~d  101 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVK  101 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc-----Cchhhh
Confidence            345899999999999999999988 889999999999999999999999985 6999999998876544     358899


Q ss_pred             EEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEEe
Q 026547          150 YAFVDADKVN-----------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       150 ~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      .|++..+.+.           .+++++.+.+.|+|||.|.+.
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            9988754322           258999999999999999773

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.4e-15  Score=124.07  Aligned_cols=106  Identities=9%  Similarity=0.121  Sum_probs=92.5

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +.+.++.+|||||||.|..++++|+..  +++|+||.+|++.++.|++..++.|+.+++++..+|..+.          +
T Consensus        58 l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----------~  125 (285)
T d1kpga_          58 LGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----------D  125 (285)
T ss_dssp             TTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----------C
T ss_pred             cCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----------c
Confidence            346678899999999999999999875  5799999999999999999999999999999999998655          4


Q ss_pred             CceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ++||.|+.-..     ..++..+|+.+.++|+|||.++++++.
T Consensus       126 ~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         126 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            78999876532     345689999999999999999998875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.1e-16  Score=121.86  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=91.8

Q ss_pred             HHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH
Q 026547           59 GQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD  136 (237)
Q Consensus        59 ~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  136 (237)
                      ..++..++..  .++++|||||||+|.++.++++..  ..+|++||+++.+++.|+++++..+  .++.++.+++.+...
T Consensus        40 ~~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~  115 (229)
T d1zx0a1          40 TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAP  115 (229)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGG
T ss_pred             HHHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccc
Confidence            3444444432  356799999999999999999863  3589999999999999999987665  468888898877655


Q ss_pred             HHhhcCCCCCceeEEEEeCCCcC--------cHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          137 QLLKDSENEGSFDYAFVDADKVN--------YWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~~~~--------~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                      .+     ..++||.|++|.....        ...+++.+.++|+|||++++.+..+.+
T Consensus       116 ~~-----~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~  168 (229)
T d1zx0a1         116 TL-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  168 (229)
T ss_dssp             GS-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             cc-----ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcc
Confidence            44     2579999998864322        356889999999999999997765444

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=3.2e-15  Score=117.24  Aligned_cols=103  Identities=16%  Similarity=0.174  Sum_probs=84.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+..+|||||||+|..+..+++.   +.+|+|+|+|+.+++.|++++...+.  ++.++++|+.+..       ...++|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~-------~~~~~f  103 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLS-------FEDKTF  103 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCC-------SCTTCE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--ccccccccccccc-------ccCcCc
Confidence            45679999999999999999984   66999999999999999999888774  4788899987752       225899


Q ss_pred             eEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++.....     +...+++.+.++|+|||.++++...
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9999876533     3456899999999999999887543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.61  E-value=1.5e-15  Score=119.45  Aligned_cols=111  Identities=24%  Similarity=0.355  Sum_probs=89.9

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+.+.....+...+...++.+|||||||+|+.|..+++..   ++|+++|.+++.++.|++++...   +++.++++|..
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~  126 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGT  126 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGG
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcc---cccccccCchh
Confidence            3456665556667788899999999999999999999864   59999999999999999987643   47999999987


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ..++.       .++||.|++.+.....+   +.+.+.|++||.||+
T Consensus       127 ~g~~~-------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~  163 (224)
T d1vbfa_         127 LGYEE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMIL  163 (224)
T ss_dssp             GCCGG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEE
T ss_pred             hcchh-------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEE
Confidence            75443       37899999987666554   346688999999987

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=2.6e-15  Score=116.16  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=87.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      +...++++|||||||+|..+.+|++.   +.+|+++|+++.+++.++++.+..++. ++++..+|..+...        .
T Consensus        26 ~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~--------~   93 (198)
T d2i6ga1          26 AKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTF--------D   93 (198)
T ss_dssp             HTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCC--------C
T ss_pred             cccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccc--------c
Confidence            44557789999999999999999985   569999999999999999999988875 58999999866532        5


Q ss_pred             CceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          146 GSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       146 ~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ++||+|++....     .....+++.+.++|+|||++++....
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            899999986532     33567999999999999999886543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.60  E-value=1.4e-15  Score=122.13  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=85.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++++|||+|||+|..+..+++.-  ..+|+|||+|+.+++.|++++...+...++.++++|+......      ..++
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~------~~~~   93 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD------LGKE   93 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC------CSSC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc------cccc
Confidence            3467899999999999988888752  3589999999999999999998888777899999998543211      2478


Q ss_pred             eeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ||+|++......       ...+++.+.++|+|||++++.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            999998754332       346889999999999999874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.60  E-value=3.1e-15  Score=114.89  Aligned_cols=120  Identities=9%  Similarity=0.010  Sum_probs=90.9

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC-----------CCc
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV-----------DHK  123 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~  123 (237)
                      .+...+++..| ...++.+|||+|||+|..+.+||+.   +.+|+|+|+|+.+++.|++..+..+.           ...
T Consensus         6 ~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T d1pjza_           6 NKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG   81 (201)
T ss_dssp             THHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred             HHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence            35455555554 4667889999999999999999985   67999999999999999998855432           134


Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-----CcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-----NYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ++++.+|..+..+..      ..+||+|+......     ....+++.+.+.|+|||.+++....+
T Consensus        82 ~~~~~~d~~~l~~~~------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          82 IEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             SEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             cceeccccccccccc------ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            678889887755433      36899998764422     24578899999999999887755444

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.59  E-value=4.2e-15  Score=119.40  Aligned_cols=108  Identities=15%  Similarity=0.187  Sum_probs=90.6

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      .....+.++|||||||+|..+..+++..| +.+++++|+ +++++.+++++...++.++++++.+|..+..         
T Consensus        75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~---------  143 (253)
T d1tw3a2          75 AYDWTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------  143 (253)
T ss_dssp             HSCCTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------
T ss_pred             hcCCccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc---------
Confidence            33456778999999999999999999987 889999998 7899999999999999999999999986532         


Q ss_pred             CCceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..+||+|++...-.+     ...+++++.+.|+|||.+++.+..
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            367999998755333     246799999999999998887654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=4.9e-15  Score=123.09  Aligned_cols=110  Identities=23%  Similarity=0.352  Sum_probs=94.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++++|||+|||+|..+++++..-  ..+|+++|+++.+++.++++++.+|+.++++++++|+.+.+..+...   ..+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~---~~~f  218 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKF  218 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             CCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc---cCCC
Confidence            457899999999999999998752  35899999999999999999999999889999999999988776544   5799


Q ss_pred             eEEEEeCCCc------------CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          149 DYAFVDADKV------------NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       149 D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      |+|++|.+..            .+..++..+.++|+|||+|++..+.
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9999997632            2456788888999999999987654

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.58  E-value=1.2e-14  Score=111.01  Aligned_cols=124  Identities=15%  Similarity=0.155  Sum_probs=101.5

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      |..+...+.++..|.....+.+|||++||+|..++.++..-  ..+|++||.++.+++.++++++..+..++++++++|+
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~  100 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA  100 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence            44455566666666556788999999999999999877752  2489999999999999999999999888899999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCC--CcCcHHHHHHHH--ccCCCCeEEEEe
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDAD--KVNYWNYHERLM--KLLKVGGIAVYD  180 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~--~~L~~gG~lv~~  180 (237)
                      .+++..+...   ..+||+||+|.+  ...+...++.+.  .+|+++|+|++.
T Consensus       101 ~~~l~~~~~~---~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         101 NRALEQFYEE---KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHHHHHHT---TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hhhhhhhccc---CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            9998876543   468999999986  345677888876  479999999985

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.7e-15  Score=119.22  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=89.1

Q ss_pred             ccHH-HHHHHHHHH-hhcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCchHHHHHHHHHHhcCCC----C
Q 026547           54 TAPD-AGQLMAMLL-KLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQIMAIDVNRETYEIGLPVIKKAGVD----H  122 (237)
Q Consensus        54 ~~~~-~~~~l~~l~-~~~~~~~vLeiG~G~G~~~~~la~~~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~----~  122 (237)
                      +.|. .+.++..|. ...++.+|||||||+||.|..+++.+.+     ..+|+++|.++++++.|++++...+..    .
T Consensus        62 s~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~  141 (223)
T d1r18a_          62 SAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG  141 (223)
T ss_dssp             CCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc
Confidence            3444 455555443 5677889999999999999988876532     358999999999999999987654321    4


Q ss_pred             cEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          123 KINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       123 ~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      ++.++++|+.+.++.       .++||.|++.+.....++   .+.+.|++||.+|+
T Consensus       142 nv~~~~~d~~~~~~~-------~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         142 QLLIVEGDGRKGYPP-------NAPYNAIHVGAAAPDTPT---ELINQLASGGRLIV  188 (223)
T ss_dssp             SEEEEESCGGGCCGG-------GCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEE
T ss_pred             EEEEEeccccccccc-------ccceeeEEEEeechhchH---HHHHhcCCCcEEEE
Confidence            699999999876543       379999999987766553   46789999999987

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.2e-15  Score=118.61  Aligned_cols=106  Identities=12%  Similarity=0.136  Sum_probs=85.8

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||||||+|..+.+++...  ..+|++||+++.+++.|++++...+. .+++++++|+.++.       +..++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~-------~~~~~  127 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFT-------PEPDS  127 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCC-------CCSSC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccc-cccccccccccccc-------ccccc
Confidence            4456799999999999999887543  35899999999999999999887765 35899999998853       12589


Q ss_pred             eeEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ||+|++.....+.     .++++.+.+.|+|||.+++.+..
T Consensus       128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            9999987654332     46899999999999999886554

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=6.7e-15  Score=121.88  Aligned_cols=112  Identities=22%  Similarity=0.347  Sum_probs=93.7

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +....++++|||++||+|..+++++..   ..+|+++|+++.+++.++++++.+|+. +++++++|+.+++..+...   
T Consensus       140 ~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~---  212 (318)
T d1wxxa2         140 YMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE---  212 (318)
T ss_dssp             HGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT---
T ss_pred             HHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh---
Confidence            445567889999999999999998864   459999999999999999999999985 5999999999988776544   


Q ss_pred             CCceeEEEEeCCCc------------CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDADKV------------NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .++||+|++|.+..            .+.+++..+.++|+|||+|++..+.
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            57999999996531            1345677888999999999987654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=3.9e-14  Score=114.61  Aligned_cols=106  Identities=18%  Similarity=0.238  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHH
Q 026547           58 AGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVL  135 (237)
Q Consensus        58 ~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  135 (237)
                      ...+...+...  .++.+|||||||+|..+..+++..+ +.+++|+|+++.+++.|++..      ++++++++|+.+. 
T Consensus        70 ~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-  141 (268)
T d1p91a_          70 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-  141 (268)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhc-
Confidence            33334444433  4667999999999999999999886 789999999999999988753      4689999998765 


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                            ++.+++||+|+.......    ++++.++|||||.+++..
T Consensus       142 ------~~~~~sfD~v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         142 ------PFSDTSMDAIIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             ------SBCTTCEEEEEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             ------cCCCCCEEEEeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence                  123689999997655443    567889999999999864

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.4e-14  Score=114.45  Aligned_cols=128  Identities=8%  Similarity=-0.043  Sum_probs=98.3

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC--------
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG--------  119 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------  119 (237)
                      ++..-...+...+.+..+....++.+|||+|||.|..+.+||+.   +.+|+|||+|+.+++.+++.....+        
T Consensus        23 ~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~   99 (229)
T d2bzga1          23 AFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEI   99 (229)
T ss_dssp             TTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcc
Confidence            44344456667777777777778889999999999999999984   6799999999999999988764321        


Q ss_pred             --------CCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          120 --------VDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       120 --------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                              ...+++++++|..+..+..      ...||+|+....     ......+++.+.++|+|||.+++....+
T Consensus       100 ~~~~~~~~~~~~v~~~~~d~~~l~~~~------~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         100 PGTKVFKSSSGNISLYCCSIFDLPRTN------IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             TTCEEEEETTSSEEEEESCGGGGGGSC------CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             cccceeeecCCcEEEEEcchhhccccc------cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence                    1246899999987765432      578999986532     3445789999999999999877765544

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.54  E-value=3.5e-14  Score=110.15  Aligned_cols=103  Identities=17%  Similarity=0.308  Sum_probs=87.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ....|||||||.|..+..+|+..| +..++|+|+++.++..|.+.+.+.++. ++.++.+|+.++...+     ...++|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~-----~~~~~~  103 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF-----EDGEID  103 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhc-----cCCcee
Confidence            345899999999999999999988 889999999999999999999999985 5999999998765433     357899


Q ss_pred             EEEEeCCCcC-----------cHHHHHHHHccCCCCeEEEE
Q 026547          150 YAFVDADKVN-----------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       150 ~i~id~~~~~-----------~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .|++..+.+.           ..++++.+.+.|+|||.+.+
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            9988643221           36899999999999999976

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.54  E-value=1.7e-14  Score=112.45  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=85.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|+.+.+++...+ +++|+|+|+++.+++.+++..+..+   ++.++.+|+.+.....    .....
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~----~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS----GIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT----TTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc----cccce
Confidence            45778999999999999999999987 6799999999999999999887754   5899999886642211    12467


Q ss_pred             eeEEEEeCCC-cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDADK-VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~~-~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      +|+|+.+... .....++.++.+.|+|||.+++..
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            8888877543 345678899999999999998754

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.54  E-value=1.4e-14  Score=114.17  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=83.8

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +..+....++++|||||||+|..+..++..   +.+|+|||+++++++.|++..     .++++++++++.+..      
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~------   77 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ------   77 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC------
T ss_pred             HHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc------
Confidence            345556678899999999999999999874   458999999999999998764     246999999987652      


Q ss_pred             CCCCCceeEEEEeCCC---cCcHHHHHHHH-ccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADK---VNYWNYHERLM-KLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~---~~~~~~~~~~~-~~L~~gG~lv~~~  181 (237)
                        .+++||+|++...-   .+...++.++. ++|+|||.+++.-
T Consensus        78 --~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          78 --LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             --CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence              14799999987643   44567888887 7899999999864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.1e-14  Score=115.48  Aligned_cols=97  Identities=19%  Similarity=0.199  Sum_probs=77.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .++.+|||+|||+|..+.++++.   +.+|+|+|+++.+++.|+++.    .   ..++.+++.+. +      +..++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l-~------~~~~~f  103 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDL-P------FPSGAF  103 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSC-C------SCTTCE
T ss_pred             CCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----c---ccccccccccc-c------cccccc
Confidence            35679999999999999999874   569999999999999998853    2   23567888664 1      235899


Q ss_pred             eEEEEeCC----CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDAD----KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~----~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|++...    ..+...+++++.++|+|||+++++..
T Consensus       104 D~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         104 EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             EEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence            99987532    34667889999999999999998643

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=5e-14  Score=115.21  Aligned_cols=117  Identities=13%  Similarity=0.163  Sum_probs=86.9

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC---cEEEEeccchHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH---KINFIESEALSV  134 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~  134 (237)
                      ...++..+....++++|||+|||+|..+..|++.   +.+|+|+|+|+.+++.|+++....+...   +..+...+....
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  120 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence            3445555666667889999999999999999984   5699999999999999999988776531   234555665443


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCC-----------cCcHHHHHHHHccCCCCeEEEEeC
Q 026547          135 LDQLLKDSENEGSFDYAFVDADK-----------VNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~-----------~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+    +..++||+|++....           .....+++++.+.|+|||+++++-
T Consensus       121 ~~~~----~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         121 DKDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHHS----CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccc----CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            3322    224789999875321           124568999999999999999964

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=7.4e-14  Score=105.44  Aligned_cols=118  Identities=14%  Similarity=0.140  Sum_probs=85.0

Q ss_pred             cHHHHHHHHHHHh-hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           55 APDAGQLMAMLLK-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        55 ~~~~~~~l~~l~~-~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +...+.+...+.. ..++.+|||+|||+|..++.++..   +++++++|.++.+++.++++++..++.+++..  .++..
T Consensus        25 ~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~--~~~d~   99 (171)
T d1ws6a1          25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARVVA--LPVEV   99 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEEEC--SCHHH
T ss_pred             HHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccceee--eehhc
Confidence            3444455555543 357889999999999999987764   56899999999999999999999998765544  44434


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC-CcCcHHHHHHHH--ccCCCCeEEEEe
Q 026547          134 VLDQLLKDSENEGSFDYAFVDAD-KVNYWNYHERLM--KLLKVGGIAVYD  180 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~-~~~~~~~~~~~~--~~L~~gG~lv~~  180 (237)
                      +++.....   .++||+||+|.+ .....+.+..+.  .+|++||++++.
T Consensus       100 ~~~~~~~~---~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         100 FLPEAKAQ---GERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHHHHHHT---TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             cccccccc---CCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            43332221   478999999975 223344455543  579999999985

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.52  E-value=6.7e-14  Score=115.58  Aligned_cols=113  Identities=10%  Similarity=0.184  Sum_probs=94.4

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ....++++|||++||+|..+++++..-  ...|++||+++..++.++++++.+++. .+++++++|+.++++.+..+   
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~---  214 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---  214 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---
T ss_pred             HHhhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh---
Confidence            345678899999999999999887642  348999999999999999999999985 57999999999999887654   


Q ss_pred             CCceeEEEEeCCC------------cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDADK------------VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..+||+|++|.+.            ..+.++++.+.++|+|||+|++..+.
T Consensus       215 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         215 HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5789999999652            12456788888999999999986653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.52  E-value=8.6e-14  Score=113.85  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             HHHHHHHH-HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEeccchHH
Q 026547           57 DAGQLMAM-LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESEALSV  134 (237)
Q Consensus        57 ~~~~~l~~-l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~  134 (237)
                      ..-+.+.. +....++++|||++||+|..+++++..   +++|++||.++.+++.|++|++.+|+.+ +++++++|+.++
T Consensus       118 ~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~  194 (309)
T d2igta1         118 VHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF  194 (309)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH
T ss_pred             HHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh
Confidence            33334443 344567889999999999999998874   5699999999999999999999999865 699999999999


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCC-------------cCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          135 LDQLLKDSENEGSFDYAFVDADK-------------VNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +.....+   ..+||+|++|.+.             ..+...++.+.++|+|||.+++.+.
T Consensus       195 l~~~~~~---~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         195 IQREERR---GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHH---TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHHhhc---CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            8876554   5789999998542             1123455667789999986555443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.4e-14  Score=112.45  Aligned_cols=119  Identities=19%  Similarity=0.270  Sum_probs=94.8

Q ss_pred             ccccHHHHHHHHHHHhh--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec
Q 026547           52 MSTAPDAGQLMAMLLKL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES  129 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~--~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (237)
                      ....++++.++......  .++.+|||+|||+|..++.++...| +.+|+++|+++.+++.|++|++..++. +++++++
T Consensus        88 lIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~  165 (274)
T d2b3ta1          88 LIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQS  165 (274)
T ss_dssp             CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECC
T ss_pred             cccccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcc-cceeeec
Confidence            34457777777655443  3456899999999999999999987 889999999999999999999999984 6999999


Q ss_pred             cchHHHHHHhhcCCCCCceeEEEEeCCC----------------------------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          130 EALSVLDQLLKDSENEGSFDYAFVDADK----------------------------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       130 d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |..+.++        ..+||+|+.+.+-                            ..+..+++...++|++||.+++.
T Consensus       166 d~~~~~~--------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         166 DWFSALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             STTGGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ccccccC--------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            9877543        3699999986321                            01234667777899999999985

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.51  E-value=3.7e-14  Score=113.87  Aligned_cols=104  Identities=8%  Similarity=0.061  Sum_probs=82.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+..+|||+|||+|..+.+++....  .+|++||+++.+++.|++++...   ++++++++|+.++.       +..++|
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~-------~~~~~f  159 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETAT-------LPPNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCC-------CCSSCE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccc-------cCCCcc
Confidence            4567999999999999998876432  48999999999999999877533   35899999987752       225789


Q ss_pred             eEEEEeCCCcCc-----HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          149 DYAFVDADKVNY-----WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~~~~~-----~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |+|++.....+.     ..+++++.+.|+|||.+++.+...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            999987654332     477999999999999999876544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.51  E-value=2.8e-14  Score=114.71  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=88.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...+.++|||||||+|..+..+++.+| +.+++++|+ |++++.++++++..+..+++.+..+|..+..         ..
T Consensus        78 d~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~  146 (256)
T d1qzza2          78 DWSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PV  146 (256)
T ss_dssp             CCTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SC
T ss_pred             CCccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc---------cc
Confidence            345678999999999999999999998 889999997 8899999999999999999999999876532         35


Q ss_pred             ceeEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +||+|++...-.+     ...+++++.+.|+|||.+++.+..
T Consensus       147 ~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         147 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            7999988754333     346799999999999988876643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=3.1e-14  Score=114.50  Aligned_cols=106  Identities=15%  Similarity=0.150  Sum_probs=90.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....++.+|||+|||+|..++.+|+. + .++|+++|++|.+++.++++++.+++.++++++++|+.++..        .
T Consensus       103 ~~~~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~  172 (260)
T d2frna1         103 KVAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------E  172 (260)
T ss_dssp             HHCCTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------C
T ss_pred             hhcCCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------C
Confidence            33567889999999999999999986 2 469999999999999999999999999999999999987643        4


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..||.|+++... ....+++.+.+.|++||+|.++..
T Consensus       173 ~~~D~Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         173 NIADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             SCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEEEECCCC-chHHHHHHHHhhcCCCCEEEEEec
Confidence            789999987654 335678888899999999977654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=5.9e-14  Score=110.56  Aligned_cols=106  Identities=16%  Similarity=0.177  Sum_probs=85.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|+.+.++++.+.++++|+++|+++.+++.++++.+..+   ++..+.+|+.......    .....
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~----~~~~~  143 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYR----ALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGT----TTCCC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCccccc----ccccc
Confidence            4577899999999999999999998778999999999999999999876543   4777777775432211    12478


Q ss_pred             eeEEEEeCCCc-CcHHHHHHHHccCCCCeEEEEe
Q 026547          148 FDYAFVDADKV-NYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       148 ~D~i~id~~~~-~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|+||.|.... +...+++.+.+.|+|||.+++.
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            99999986544 3466899999999999998875

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.47  E-value=8.6e-14  Score=109.91  Aligned_cols=108  Identities=16%  Similarity=0.069  Sum_probs=81.1

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++.+|||+|||+|+.+.+++...+ +++|+|+|+++.+++.+++..+..   +++.++.+|+.......    .....
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~----~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA----NIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccc----cccce
Confidence            55678999999999999999999876 789999999999999998876543   35788888876654322    01234


Q ss_pred             eeEEEEeCC-CcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          148 FDYAFVDAD-KVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       148 ~D~i~id~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +|+++.+.. ..+...++.++.+.|+|||.+++..-.
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence            455555433 333566789999999999998886543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.8e-13  Score=102.60  Aligned_cols=120  Identities=14%  Similarity=0.061  Sum_probs=93.6

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      |.++...+.++..+.....+.+|||++||+|..++..+.+-  ..+|+.||.++..++.++++++..+.. +++++.+|+
T Consensus        25 Pt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~  101 (183)
T d2fpoa1          25 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNA  101 (183)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCH
T ss_pred             cCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecc
Confidence            33445556666666566788899999999999999876642  248999999999999999999988764 589999999


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCC--cCcHHHHHHHH--ccCCCCeEEEEe
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADK--VNYWNYHERLM--KLLKVGGIAVYD  180 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~--~~L~~gG~lv~~  180 (237)
                      .+++...      ..+||+||+|.+-  ..+...++.+.  .+|+++|++++.
T Consensus       102 ~~~l~~~------~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         102 MSFLAQK------GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             HHHHSSC------CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccc------ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            8876532      5789999999763  33566777775  479999999985

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=3.3e-13  Score=111.05  Aligned_cols=108  Identities=16%  Similarity=0.198  Sum_probs=90.1

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC----CCCcEEEEeccchHHHHHHhhc
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG----VDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ....++++||.||.|.|..+.+++++.+ ..+|++||++++.++.+++++...+    -.++++++.+|+.+++...   
T Consensus        73 ~~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~---  148 (312)
T d1uira_          73 LTHPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---  148 (312)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---
T ss_pred             hhCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc---
Confidence            3456789999999999999999988654 7799999999999999999986431    2478999999999998764   


Q ss_pred             CCCCCceeEEEEeCCC----------cCcHHHHHHHHccCCCCeEEEEe
Q 026547          142 SENEGSFDYAFVDADK----------VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~----------~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                         .++||+|++|...          -...++++.+.+.|+|||++++.
T Consensus       149 ---~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 ---EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             ---CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             ---CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence               5789999998631          11368999999999999999985

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.8e-13  Score=106.15  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             HHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           63 AMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        63 ~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ..+....+..+|||||||+|..+..++       +++|||+++.+++.++++        +++++++|+.+..       
T Consensus        29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~-------   86 (208)
T d1vlma_          29 QAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLP-------   86 (208)
T ss_dssp             HHHHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCC-------
T ss_pred             HHHHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------ccccccccccccc-------
Confidence            334455666789999999999877663       468999999999998873        4889999987652       


Q ss_pred             CCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          143 ENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       143 ~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ...++||+|++...   ..+...+++++.+.|+|||.+++.....
T Consensus        87 ~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          87 LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            22589999998753   3456789999999999999999977643

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=6.5e-13  Score=108.10  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=89.5

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC---CCCcEEEEeccchHHHHHHhhcCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG---VDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      ...+|++||-||.|.|..+.+++++.+ ..+|++||+++.+++.+++++....   -+++++++.+|+.+++...     
T Consensus        86 ~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  159 (295)
T d1inla_          86 LHPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-----  159 (295)
T ss_dssp             HSSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-----
T ss_pred             hCCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC-----
Confidence            346789999999999999999988754 6799999999999999999886432   2478999999999998754     


Q ss_pred             CCCceeEEEEeCCCc--------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          144 NEGSFDYAFVDADKV--------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       144 ~~~~~D~i~id~~~~--------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       .++||+|++|....        ...++++.+.+.|+|||++++..
T Consensus       160 -~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         160 -KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             -SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             -CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence             57899999985321        14689999999999999999864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=1.2e-12  Score=108.59  Aligned_cols=107  Identities=16%  Similarity=0.163  Sum_probs=85.2

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....++++|||||||+|..++.+|++.  ..+|+++|.++ +++.|++..+..+..++++++++++.+..       .+.
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-------~~~  103 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-------LPF  103 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-------CSS
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-------Ccc
Confidence            345678999999999999999888853  34899999986 77899999999999999999999987752       124


Q ss_pred             CceeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ++||+|+....      ......++....++|+|||.++-+-+
T Consensus       104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~  146 (328)
T d1g6q1_         104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKC  146 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeec
Confidence            78999987532      23355678888899999999875443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.41  E-value=3.8e-13  Score=105.96  Aligned_cols=118  Identities=20%  Similarity=0.312  Sum_probs=88.1

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      .|....++..++...+|++|||||++.|+++++++..+   ..+++|+++|+++........      ...+++++.+|+
T Consensus        65 ~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gDs  138 (232)
T d2bm8a1          65 DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDC  138 (232)
T ss_dssp             CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCS
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeeccc
Confidence            36777888889998999999999999999999887543   457899999998765432211      135799999987


Q ss_pred             hH--HHHHHhhcCCCCCceeEEEEeCCCcCcHHHHH-HHHccCCCCeEEEEeCcC
Q 026547          132 LS--VLDQLLKDSENEGSFDYAFVDADKVNYWNYHE-RLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~  183 (237)
                      .+  .+..+     ....+|+||+|+.+.......+ ...++|++||+++++|..
T Consensus       139 ~~~~~~~~l-----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         139 SDLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SCSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             ccHHHHHHH-----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            54  33333     1356899999998766443333 245899999999999874

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=8e-13  Score=109.21  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      ..++++|||||||+|..++.+|+..  ..+|+++|.++. ...+++..+..++.++++++++++.+..       ...++
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~-------~~~~~  100 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEK  100 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc-------cccce
Confidence            4578999999999999999988853  248999999975 5778888888999999999999997752       12479


Q ss_pred             eeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          148 FDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       148 ~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ||+|+....      ......++..+.++|+|||.++-+.
T Consensus       101 ~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~  140 (316)
T d1oria_         101 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDR  140 (316)
T ss_dssp             EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred             eEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeee
Confidence            999987532      2335678888889999999988543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.39  E-value=1.6e-12  Score=106.32  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=88.6

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC---CCcEEEEeccchHHHHHHhhc
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV---DHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      +....+|++||-||.|.|..+.+++++-+ ..+|++||+++..++.+++++.....   .++++++.+|+.+++...   
T Consensus       101 l~~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~---  176 (312)
T d2b2ca1         101 MFAHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH---  176 (312)
T ss_dssp             HHHSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC---
T ss_pred             HhcCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC---
Confidence            34456789999999999999999988654 57999999999999999998854321   378999999999998753   


Q ss_pred             CCCCCceeEEEEeCCCc-------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKV-------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                         .++||+|++|....       ...+|++.+.+.|+|||+++...
T Consensus       177 ---~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         177 ---KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ---TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             ---CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence               57899999985422       13689999999999999999864

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.8e-13  Score=108.02  Aligned_cols=117  Identities=10%  Similarity=0.007  Sum_probs=83.2

Q ss_pred             HHHhhcCCCEEEEEcccccHHHHHHHhhC----C-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcE--EEEeccchHHHH
Q 026547           64 MLLKLVNAKKTIEIGVFTGYSLLLTALTI----P-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKI--NFIESEALSVLD  136 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~~~~~la~~~----~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v--~~~~~d~~~~~~  136 (237)
                      .+....+..+|||||||+|..+..++..+    + ...++++||+++.+++.+++.++.....+.+  .+...++.++..
T Consensus        34 ~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (280)
T d1jqea_          34 RIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQS  113 (280)
T ss_dssp             TTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHH
T ss_pred             HhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcc
Confidence            33333344489999999999988877643    2 1347899999999999999998765433444  455666655443


Q ss_pred             HHhhcCCCCCceeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          137 QLLKDSENEGSFDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       137 ~~~~~~~~~~~~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .... ....++||+|++...   ..+...+++.+.++|+|||.+++..
T Consensus       114 ~~~~-~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         114 RMLE-KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             HHTT-SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhcc-cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            3221 133589999998654   3456789999999999999888754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.38  E-value=2.8e-12  Score=103.50  Aligned_cols=109  Identities=16%  Similarity=0.190  Sum_probs=90.9

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-C--CCCcEEEEeccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-G--VDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ....++++||-||-|.|..+.+++++.+ ..+|+.||++++.++.|++++... +  -++|++++.+|+..++...    
T Consensus        71 ~~~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~----  145 (274)
T d1iy9a_          71 FTHPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS----  145 (274)
T ss_dssp             HHSSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC----
T ss_pred             hccCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc----
Confidence            3456789999999999999999988754 679999999999999999998542 2  2478999999999998753    


Q ss_pred             CCCCceeEEEEeCCCc-------CcHHHHHHHHccCCCCeEEEEeC
Q 026547          143 ENEGSFDYAFVDADKV-------NYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                        .++||+|++|....       -..++++.+.+.|+|||+++...
T Consensus       146 --~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         146 --ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             --CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             --CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence              57899999995422       15689999999999999999864

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=105.97  Aligned_cols=109  Identities=14%  Similarity=0.174  Sum_probs=89.3

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---CCCCcEEEEeccchHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---GVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      .....|++||-||.|.|..+..++++.+ ..+|+.+|+++..++.+++++...   -.+++++++.+|+..++...    
T Consensus        74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~----  148 (285)
T d2o07a1          74 CSHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN----  148 (285)
T ss_dssp             TTSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC----
T ss_pred             hhCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC----
Confidence            3456789999999999999999987654 679999999999999999998642   12479999999999998753    


Q ss_pred             CCCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeC
Q 026547          143 ENEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                        .++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       149 --~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         149 --QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             --SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence              578999999964211       3478999999999999999863

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.37  E-value=2.3e-12  Score=104.19  Aligned_cols=108  Identities=15%  Similarity=0.224  Sum_probs=88.3

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc---------CCCCcEEEEeccchHHH
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA---------GVDHKINFIESEALSVL  135 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~~  135 (237)
                      +....++++||.||.|.|..+..++++ + ..+|+.||+++.+++.+++++...         ...+|++++.+|+..++
T Consensus        67 l~~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l  144 (276)
T d1mjfa_          67 MLAHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI  144 (276)
T ss_dssp             HHHSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH
T ss_pred             hhcCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH
Confidence            344568899999999999999888875 4 468999999999999999887422         23578999999999988


Q ss_pred             HHHhhcCCCCCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeC
Q 026547          136 DQLLKDSENEGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       136 ~~~~~~~~~~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..       .++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       145 ~~-------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         145 KN-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             HH-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hc-------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            64       378999999864321       3689999999999999999853

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.9e-12  Score=106.26  Aligned_cols=116  Identities=13%  Similarity=0.070  Sum_probs=86.6

Q ss_pred             HHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc-------CC-CCcEEEEeccchH
Q 026547           62 MAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA-------GV-DHKINFIESEALS  133 (237)
Q Consensus        62 l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~-~~~v~~~~~d~~~  133 (237)
                      +...+...++.+|||+|||+|..++.+|+..+ ..+++|||+++.+++.|++..++.       |. ..+++++++|+.+
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            33444567788999999999999999998876 679999999999999998776553       33 2469999999876


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCC--cCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADK--VNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ..-.-  .   ....|+|++....  ......+.++.+.|||||.||+...+
T Consensus       222 ~~~~~--~---~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         222 EEWRE--R---IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             HHHHH--H---HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             ccccc--c---cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            42110  0   1235788876432  33456788889999999999986544

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=3.1e-12  Score=97.93  Aligned_cols=111  Identities=19%  Similarity=0.155  Sum_probs=89.2

Q ss_pred             HhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           66 LKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ....++..+||++||+|..+..+++.++ +++|+|+|.++++++.|+++++..+  +++.+++++..+.-..+..  ...
T Consensus        19 l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~--~~~   93 (192)
T d1m6ya2          19 LKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKT--LGI   93 (192)
T ss_dssp             HCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHH--TTC
T ss_pred             hCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHH--cCC
Confidence            3566778999999999999999999997 7999999999999999999988765  5799999987664333222  235


Q ss_pred             CceeEEEEeCCCcC------------cHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVN------------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~------------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ++||.|++|.+.+.            ....++.+.++|++||.+++-+
T Consensus        94 ~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          94 EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            89999999976533            2356777779999999998744

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.2e-12  Score=106.23  Aligned_cols=106  Identities=16%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++++|||||||+|..++.+|++.+  .+|+++|.++.+. .+++..+..+..++++++++++.+..       ...+
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~-------~~~~  101 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVH-------LPVE  101 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSC-------CSCS
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhc-------Cccc
Confidence            456788999999999999999998632  4899999998765 56777788888889999999998752       1247


Q ss_pred             ceeEEEEeCC------CcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          147 SFDYAFVDAD------KVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       147 ~~D~i~id~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +||+|+....      ......++....++|+|||.++.+.+
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~  143 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDIC  143 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecccc
Confidence            9999987532      12244666667789999999885433

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=2.9e-11  Score=97.07  Aligned_cols=122  Identities=17%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             ccccHHHHHHHHHHHh---hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe
Q 026547           52 MSTAPDAGQLMAMLLK---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~---~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      ....++++.++.....   ..+..+++|+|||+|..++.+++. + +.+|+++|+++++++.|++|.+.++..+++.+..
T Consensus        89 lIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~  166 (271)
T d1nv8a_          89 FVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRK  166 (271)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred             cCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEee
Confidence            3445677766655443   345679999999999999998864 5 8899999999999999999999999999999999


Q ss_pred             ccchHHHHHHhhcCCCCCceeEEEEeCCC----------------------cCcHHHHHH-HHccCCCCeEEEEeC
Q 026547          129 SEALSVLDQLLKDSENEGSFDYAFVDADK----------------------VNYWNYHER-LMKLLKVGGIAVYDN  181 (237)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~----------------------~~~~~~~~~-~~~~L~~gG~lv~~~  181 (237)
                      ++..+.+...      .++||+|+.+.+-                      .+-..+++. +.++|+|||++++.-
T Consensus       167 ~~~~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         167 GEFLEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             SSTTGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             cccccccccc------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence            9988766543      4799999986320                      000133333 447899999999853

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.31  E-value=5.2e-12  Score=102.70  Aligned_cols=108  Identities=20%  Similarity=0.303  Sum_probs=89.9

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC---CCCcEEEEeccchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG---VDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ..++++||-||-|.|..+..++++.+ ..+|++||++++.++.+++++....   ..++++++.+|+.+++...     .
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~  151 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  151 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----c
Confidence            45789999999999999999988655 6799999999999999999885432   2478999999999998754     1


Q ss_pred             CCceeEEEEeCCCcC-------cHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVN-------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            358999999864321       4689999999999999999874

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.29  E-value=2e-11  Score=92.86  Aligned_cols=124  Identities=12%  Similarity=0.085  Sum_probs=95.3

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC-cEEEEecc
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH-KINFIESE  130 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~v~~~~~d  130 (237)
                      |..+...+.++..+.....+.+|||+.||+|..++..+.+-  ...|+.||.++..++..+++++..+..+ ...++..|
T Consensus        25 Pt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          25 PTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            45566777777777666688899999999999999887653  3499999999999999999999998754 56778888


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHH--ccCCCCeEEEEeC
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLM--KLLKVGGIAVYDN  181 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~--~~L~~gG~lv~~~  181 (237)
                      +.+++....    ...+||+||+|.+-..  +...++.+.  .+|+++|+++++.
T Consensus       103 ~~~~l~~~~----~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1         103 SLDFLKQPQ----NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             HHHHTTSCC----SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccccccc----cCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            777655321    2357999999987433  556677765  4799999999963

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=3.1e-11  Score=102.07  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=83.1

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC-------CC-CcEEE-EeccchH--
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG-------VD-HKINF-IESEALS--  133 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~-------~~-~~v~~-~~~d~~~--  133 (237)
                      .+.+.++.+|||||||.|..++.+|...+ ..+|+|||+++.+++.|+++.++.+       .. ..+.+ ..++..+  
T Consensus       211 ~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~  289 (406)
T d1u2za_         211 QCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNN  289 (406)
T ss_dssp             HTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCH
T ss_pred             HhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcc
Confidence            34567788999999999999999998876 6799999999999999998887642       11 23444 3444332  


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCC--CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          134 VLDQLLKDSENEGSFDYAFVDAD--KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .....      ....|+|++...  .......+.++.+.|||||.||+.+.+.
T Consensus       290 ~~d~~------~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         290 RVAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             HHHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             ccccc------cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            11111      267889998753  2345678899999999999999876553

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.7e-10  Score=93.45  Aligned_cols=160  Identities=18%  Similarity=0.180  Sum_probs=112.4

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      +......+...+....++.+|||+++|.|.=|..++.... +++|+++|+++..+...++++++.|..+ +.....+...
T Consensus        86 vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~  163 (284)
T d1sqga2          86 VQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYP  163 (284)
T ss_dssp             ECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCT
T ss_pred             eccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-eeeecccccc
Confidence            4445555566667777889999999999999999998766 6899999999999999999999999864 4444444322


Q ss_pred             HHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccCCCCeEEEEeCcCCCCcc
Q 026547          134 VLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (237)
Q Consensus       134 ~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (237)
                      . ...     ....||.|++|++.+..                         ...++.+.++|++||.||...+...-. 
T Consensus       164 ~-~~~-----~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~-  236 (284)
T d1sqga2         164 S-QWC-----GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE-  236 (284)
T ss_dssp             H-HHH-----TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG-
T ss_pred             c-hhc-----ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh-
Confidence            2 111     14789999999754221                         356777778999999999998875331 


Q ss_pred             cCCCCCCCccccchHHHHHHHHHHhhcCCCceEE-----------eee---cCCceEEEEEcC
Q 026547          189 AMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLS-----------HVP---LGDGITICWRIF  237 (237)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~lp---~~~Gl~i~~~~~  237 (237)
                           +     +  -..++.|   +..+++++..           ++|   -++|+.+|+.+|
T Consensus       237 -----E-----N--E~vv~~~---l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l~K  284 (284)
T d1sqga2         237 -----E-----N--SLQIKAF---LQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  284 (284)
T ss_dssp             -----G-----T--HHHHHHH---HHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             -----h-----C--HHHHHHH---HHhCCCcEEecCCCCCCCcEEECCCCCCcccEEEEEEEC
Confidence                 1     1  1223444   4456666542           233   248999988765

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=9.1e-11  Score=90.40  Aligned_cols=88  Identities=13%  Similarity=0.185  Sum_probs=69.4

Q ss_pred             cHHHHHHHHHHHhh---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           55 APDAGQLMAMLLKL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        55 ~~~~~~~l~~l~~~---~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      ++..+..+..++..   ..+++|||+|||+|..++.++.. + ..+|+++|+++.+++.++++++..+.  +.+++.+|+
T Consensus        28 p~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~  103 (201)
T d1wy7a1          28 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDV  103 (201)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCG
T ss_pred             CHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECch
Confidence            35555555444443   36789999999999999987764 2 35999999999999999999988775  578999998


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCC
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~  156 (237)
                      .+.          .++||+|++|.+
T Consensus       104 ~~~----------~~~fD~Vi~nPP  118 (201)
T d1wy7a1         104 SEF----------NSRVDIVIMNPP  118 (201)
T ss_dssp             GGC----------CCCCSEEEECCC
T ss_pred             hhh----------CCcCcEEEEcCc
Confidence            664          478999999865

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=5.9e-10  Score=91.42  Aligned_cols=124  Identities=21%  Similarity=0.248  Sum_probs=98.3

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      .+......+...+....++.+|||+++|.|.=|..++..+...+.++++|.++..+...++++++.|..+ +.+...|..
T Consensus        99 ~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~  177 (313)
T d1ixka_          99 YIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSL  177 (313)
T ss_dssp             EECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGG
T ss_pred             EEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-ccccccccc
Confidence            3444555555566667788999999999999999999888778899999999999999999999999854 777777776


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCc-------------------------HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNY-------------------------WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .... .      ...||.|++|++.+..                         .+.+..+.++|+|||.||...+..
T Consensus       178 ~~~~-~------~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         178 HIGE-L------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             GGGG-G------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccc-c------cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            5422 1      4789999999653221                         246677778999999999998875

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.4e-12  Score=99.44  Aligned_cols=112  Identities=19%  Similarity=0.004  Sum_probs=75.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcE-------------------------
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKI-------------------------  124 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-------------------------  124 (237)
                      ++.+|||||||+|..+..++...  ..+|+|+|+++.+++.|++++++.+.....                         
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            45689999999999887776532  237999999999999999998766532110                         


Q ss_pred             ----EEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-------cCcHHHHHHHHccCCCCeEEEEeCcCCCC
Q 026547          125 ----NFIESEALSVLDQLLKDSENEGSFDYAFVDADK-------VNYWNYHERLMKLLKVGGIAVYDNTLWGG  186 (237)
Q Consensus       125 ----~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g  186 (237)
                          .....+.....   .......++||+|+.....       ..+..+++++.++|||||.+++.+....+
T Consensus       129 ~~~~~~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHLGN---PLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTSSS---TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhhhccccccccccc---ccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence                00000000000   0001235789999875432       23557889999999999999998876433

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.13  E-value=1.8e-10  Score=88.06  Aligned_cols=69  Identities=16%  Similarity=0.254  Sum_probs=57.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      .+++|||+|||+|..++.++..-  ..+|+++|+++.+++.|++++      .+++++++|+.+.          .++||
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l----------~~~fD  109 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEI----------SGKYD  109 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGC----------CCCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHcc------ccccEEEEehhhc----------CCcce
Confidence            68899999999999988777642  358999999999999999975      3588999998664          48999


Q ss_pred             EEEEeCC
Q 026547          150 YAFVDAD  156 (237)
Q Consensus       150 ~i~id~~  156 (237)
                      +|+.+.+
T Consensus       110 ~Vi~NPP  116 (197)
T d1ne2a_         110 TWIMNPP  116 (197)
T ss_dssp             EEEECCC
T ss_pred             EEEeCcc
Confidence            9998854

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-10  Score=92.83  Aligned_cols=83  Identities=16%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH-HHhhcCCCCCce
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD-QLLKDSENEGSF  148 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~~~~~~~  148 (237)
                      +..++||+|||+|..++.++...+ +.+++++|+++++++.|+++++.+++.+++.+++.+....+. .+..  ...++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--cccCce
Confidence            345899999999999999999887 889999999999999999999999999999998876544321 1111  124689


Q ss_pred             eEEEEeC
Q 026547          149 DYAFVDA  155 (237)
Q Consensus       149 D~i~id~  155 (237)
                      |+|+++.
T Consensus       138 D~ivsNP  144 (250)
T d2h00a1         138 DFCMCNP  144 (250)
T ss_dssp             SEEEECC
T ss_pred             eEEEecC
Confidence            9999864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.5e-11  Score=95.42  Aligned_cols=113  Identities=14%  Similarity=0.018  Sum_probs=73.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc-------------------------
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK-------------------------  123 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------------------------  123 (237)
                      .++.++||+|||+|..++..+...  ..+|+++|+++.+++.++++++..+..-.                         
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            357799999999998776544332  34899999999999999998765432100                         


Q ss_pred             ----EEEEeccchHHHHHHhhcCCCCCceeEEEEeCC-------CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          124 ----INFIESEALSVLDQLLKDSENEGSFDYAFVDAD-------KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       124 ----v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                          ..+..+|........ ......++||+|++...       ...+...++++.++|||||++++.+.+.
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~-~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~  201 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLG-AGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE  201 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTC-SSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred             hhhhhccccccccCCCccc-cCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence                112223322110000 00012357999986532       1245678899999999999999977754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.1e-09  Score=87.25  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=90.3

Q ss_pred             HHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH
Q 026547           59 GQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL  138 (237)
Q Consensus        59 ~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  138 (237)
                      ..+...++...++.+|||+++|.|+-|.+++..+...++|+++|+++..++..++++++.|.. ++.+...|.....+..
T Consensus        83 S~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          83 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD  161 (293)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC
T ss_pred             ccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc
Confidence            334445556777889999999999999999987766789999999999999999999999986 4888888886653321


Q ss_pred             hhcCCCCCceeEEEEeCCCcCc---------------------------HHHHHHHHccCCCCeEEEEeCcCC
Q 026547          139 LKDSENEGSFDYAFVDADKVNY---------------------------WNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      .    ..++||.|++|++.+..                           ...+..+. .+++||.||...+..
T Consensus       162 ~----~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         162 P----RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             G----GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             c----ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence            1    13689999999653220                           11222333 478999999988865

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5.6e-10  Score=86.00  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=88.3

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++++++|+|||.|.-++.+|-..| +.+++.+|.+...+...++..++.++. +++++++.+.+...        ..
T Consensus        62 ~~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~--------~~  131 (207)
T d1jsxa_          62 PYLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFPS--------EP  131 (207)
T ss_dssp             GGCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSCC--------CS
T ss_pred             hhhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhcc--------cc
Confidence            455778999999999999999998887 899999999999999999999999985 59999999887522        46


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +||+|..-+. .....+++.+.++++++|.+++-
T Consensus       132 ~fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~~  164 (207)
T d1jsxa_         132 PFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             CEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ccceehhhhh-cCHHHHHHHHHHhcCCCcEEEEE
Confidence            8999876654 45678899999999999998874

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.1e-09  Score=91.30  Aligned_cols=123  Identities=12%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             CCccccHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547           50 AMMSTAPDAGQLMAMLL----KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN  125 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~----~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  125 (237)
                      .|..+.+...+.|...+    ...+..+|||+.||+|..++.+|+.   ..+|+++|.++++++.|+++.+.+|+. +++
T Consensus       188 sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~  263 (358)
T d1uwva2         188 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVT  263 (358)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEE
T ss_pred             hhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccc-cce
Confidence            35566777766665533    3446779999999999999999975   459999999999999999999999986 599


Q ss_pred             EEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          126 FIESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       126 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++.++..+.+......   ..+||+|++|.+.....+.++.+.+. +|.-++.++
T Consensus       264 ~~~~~~~~~~~~~~~~---~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         264 FYHENLEEDVTKQPWA---KNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             EEECCTTSCCSSSGGG---TTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEEE
T ss_pred             eeecchhhhhhhhhhh---hccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEEe
Confidence            9999988765543222   47899999998877777777777653 666666664

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.93  E-value=1.2e-08  Score=85.32  Aligned_cols=110  Identities=18%  Similarity=0.195  Sum_probs=90.3

Q ss_pred             HHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCC--------------cEEEEecc
Q 026547           65 LLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDH--------------KINFIESE  130 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------------~v~~~~~d  130 (237)
                      +++..++.+|||..||+|.-++.++...+ ..+|++.|+++..++.++++++.++..+              .+.+.+.|
T Consensus        40 ~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~D  118 (375)
T d2dula1          40 LLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD  118 (375)
T ss_dssp             HHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred             HHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhh
Confidence            34456889999999999999998877665 5699999999999999999999887542              46778888


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      +...+...      ...||+|.+|... ....|++.+.+.++.||+|++...
T Consensus       119 a~~~~~~~------~~~fDvIDiDPfG-s~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         119 ANRLMAER------HRYFHFIDLDPFG-SPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHHHHHS------TTCEEEEEECCSS-CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhHhh------cCcCCcccCCCCC-CcHHHHHHHHHHhccCCEEEEEec
Confidence            87776543      4789999999643 446899999999999999998544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=1.1e-08  Score=80.12  Aligned_cols=104  Identities=14%  Similarity=0.165  Sum_probs=86.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      ...+++|||||.|.-++-+|-..| +.+++.+|.+...+...+...++.++. ++.++++.+++.....    ...++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~----~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccc----cccccce
Confidence            467999999999999999998887 889999999999999999999999986 5889999887653211    1146899


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      +|..-+.. ....+++.+.+++++||.+++-
T Consensus       144 ~v~sRAva-~l~~ll~~~~~~l~~~g~~i~~  173 (239)
T d1xdza_         144 IVTARAVA-RLSVLSELCLPLVKKNGLFVAL  173 (239)
T ss_dssp             EEEEECCS-CHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEEhhhh-CHHHHHHHHhhhcccCCEEEEE
Confidence            99887654 5678899999999999999873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.82  E-value=2e-08  Score=79.22  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=76.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+..+|||||||+|..+..++++.| +.+++.+|+ |+.+       +..+..++++++.+|..+.          ....
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~----------~p~~  140 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFAS----------VPQG  140 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTC----------CCCE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhhh-------hccCCCCCeEEecCCcccc----------cccc
Confidence            4567999999999999999999998 899999997 4333       3455568999999998653          2456


Q ss_pred             eEEEEeCCCcC-----cHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          149 DYAFVDADKVN-----YWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |++++...-.+     ....++++.+.|+|||.+++.+...
T Consensus       141 D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~  181 (244)
T d1fp1d2         141 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  181 (244)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             eEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence            99987654333     3467899999999999988877654

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.77  E-value=3.7e-08  Score=77.17  Aligned_cols=101  Identities=10%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      +....+.+...+...++++|||||||+|..|..++..   ..+|++||+++.+++..++.+..   .++++++++|++++
T Consensus         6 d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~   79 (235)
T d1qama_           6 SKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQF   79 (235)
T ss_dssp             CHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhc
Confidence            3334444444455667899999999999999999986   45999999999999999887643   24799999999886


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      -.       .......|+-+.+-.-..+.+..+.
T Consensus        80 ~~-------~~~~~~~vv~NLPYnIss~il~~ll  106 (235)
T d1qama_          80 KF-------PKNQSYKIFGNIPYNISTDIIRKIV  106 (235)
T ss_dssp             CC-------CSSCCCEEEEECCGGGHHHHHHHHH
T ss_pred             cc-------cccccceeeeeehhhhhHHHHHHHH
Confidence            21       1122234555555444445555554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.76  E-value=7.1e-08  Score=76.00  Aligned_cols=97  Identities=9%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      .+..+|||||+|+|..+..+++++| +.+++..|+ |+.+       +..+..++++++.+|..+.          ...+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~----------~p~a  139 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS----------IPNA  139 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC----------CCCC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHHH-------HhCcccCceEEEecCcccC----------CCCC
Confidence            4567899999999999999999998 889999998 4333       3456678999999998653          2467


Q ss_pred             eEEEEeCCCcC-----cHHHHHHHHccCCCC---eEEEEeCcCC
Q 026547          149 DYAFVDADKVN-----YWNYHERLMKLLKVG---GIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~~~~-----~~~~~~~~~~~L~~g---G~lv~~~~~~  184 (237)
                      |++++...-++     ....++++.+.|+||   |.+++.+...
T Consensus       140 D~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         140 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             cEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence            99987654333     346789999999998   6666655443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.73  E-value=8.4e-09  Score=79.82  Aligned_cols=107  Identities=17%  Similarity=0.214  Sum_probs=81.1

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      .+...++|..++...++.+|||.|||+|..+..+.+..+....++++|+++..+..          ..+..++++|....
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~~   73 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLLW   73 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhcc
Confidence            46778888888888888999999999999988888777767889999999876432          33467788887654


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCc--------------------------------CcHHHHHHHHccCCCCeEEEE
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKV--------------------------------NYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~--------------------------------~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .        ....||+|+.+.+-.                                .+..+++...+.|++||.+++
T Consensus        74 ~--------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          74 E--------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             C--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             c--------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            2        247899998763210                                123567788899999998755

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.70  E-value=1.2e-07  Score=71.27  Aligned_cols=106  Identities=10%  Similarity=0.048  Sum_probs=81.8

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      ...++..++|+.+|.|+.+..++..   +++|+++|.+++++..+++.     ..+++.+++++..++...+...  ..+
T Consensus        15 ~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~--~~~   84 (182)
T d1wg8a2          15 AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAAL--GVE   84 (182)
T ss_dssp             TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHc--CCC
Confidence            4567889999999999999999884   67999999999999888763     2457999999877655443322  347


Q ss_pred             ceeEEEEeCCCcCc------------HHHHHHHHccCCCCeEEEEeCc
Q 026547          147 SFDYAFVDADKVNY------------WNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       147 ~~D~i~id~~~~~~------------~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ++|.|++|.+.+.+            ...++.....|++||.+++-..
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            89999999765332            2356777789999999987653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=4.5e-08  Score=80.41  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=83.3

Q ss_pred             ccHHHHHHHHHHH----hhcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEE
Q 026547           54 TAPDAGQLMAMLL----KLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQIMAIDVNRETYEIGLPVIKKAGVDHKIN  125 (237)
Q Consensus        54 ~~~~~~~~l~~l~----~~~~~~~vLeiG~G~G~~~~~la~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  125 (237)
                      +++....+|..++    ...++.+|||.|||+|...+.+...+.    ...+++|+|+++.++..|+.++...+.  ...
T Consensus        97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~  174 (328)
T d2f8la1          97 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMT  174 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCE
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhh
Confidence            3455555555443    345567899999999999888765432    245899999999999999998877765  366


Q ss_pred             EEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC---------------------cHHHHHHHHccCCCCeEEEE
Q 026547          126 FIESEALSVLDQLLKDSENEGSFDYAFVDADKVN---------------------YWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       126 ~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~---------------------~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +.++|.....        ...+||+|+.+.+-..                     ...+++.+.++|++||.+++
T Consensus       175 ~~~~d~~~~~--------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         175 LLHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             EEESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hhcccccccc--------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            7788765432        2578999998854210                     23478889999999996544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.8e-07  Score=74.81  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=76.7

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ++.....+...+...+.+.|||||+|.|..|..+++.   +.+|++||+++.+++..++.+.......+++++.+|++..
T Consensus         6 d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~   82 (278)
T d1zq9a1           6 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   82 (278)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence            4444455555556667889999999999999999986   4599999999999999999887766567899999999876


Q ss_pred             HHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          135 LDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       135 ~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      .         ...++.|+-+.+-.-..+.+..+.
T Consensus        83 ~---------~~~~~~vV~NLPY~Iss~il~~~~  107 (278)
T d1zq9a1          83 D---------LPFFDTCVANLPYQISSPFVFKLL  107 (278)
T ss_dssp             C---------CCCCSEEEEECCGGGHHHHHHHHH
T ss_pred             h---------hhhhhhhhcchHHHHHHHHHHHHH
Confidence            2         234556666655544455555554

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.57  E-value=1.3e-08  Score=80.26  Aligned_cols=107  Identities=11%  Similarity=0.143  Sum_probs=74.0

Q ss_pred             CCCCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           48 PRAMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        48 ~~~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      +..++. ++...+.+...+...+.++|||||||+|..|..+++.   +.+|++||+++.+++.+++.+.   ..++++++
T Consensus         8 GQnFL~-d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii   80 (245)
T d1yuba_           8 SQNFLT-SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLI   80 (245)
T ss_dssp             CCCBCC-CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEEC
T ss_pred             CCcccC-CHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhh
Confidence            344443 3334444445556667889999999999999999986   4599999999999988776553   23579999


Q ss_pred             eccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          128 ESEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       128 ~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      ++|++++-  +     ....++.|+.+.+-.-..+.+..+.
T Consensus        81 ~~D~l~~~--~-----~~~~~~~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          81 HQDILQFQ--F-----PNKQRYKIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             CSCCTTTT--C-----CCSSEEEEEEECCSSSCHHHHHHHH
T ss_pred             hhhhhccc--c-----ccceeeeEeeeeehhhhHHHHHHHh
Confidence            99998862  1     2355666666665544455554443

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.56  E-value=1.3e-07  Score=74.31  Aligned_cols=96  Identities=11%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      +..+|||||||.|..+..+++++| +.+++.+|+.+ .+       +.....+++++..+|..+.++          ..|
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P----------~ad  141 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIP----------KAD  141 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCC----------CCS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHH-hh-------hhcccCCceEEecccccccCC----------Ccc
Confidence            457999999999999999999998 89999999854 33       233445789999999866432          234


Q ss_pred             EEEEeCC-----CcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          150 YAFVDAD-----KVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       150 ~i~id~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ..++...     .......++++.+.|+|||.+++.+...
T Consensus       142 ~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         142 AVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             CEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred             eEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence            4444322     2224578999999999999888776653

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.49  E-value=1.3e-07  Score=71.84  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             cCCCEEEEEcccccHHHHHH----HhhCC---CCCEEEEEeCCchHHHHHHHH------------------HHhcCCC--
Q 026547           69 VNAKKTIEIGVFTGYSLLLT----ALTIP---EDGQIMAIDVNRETYEIGLPV------------------IKKAGVD--  121 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~l----a~~~~---~~~~v~~vD~~~~~~~~a~~~------------------~~~~~~~--  121 (237)
                      .++-+|+.+||++|--+..+    .....   ...+|+++|+++..++.|++.                  +...+..  
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            45569999999999854333    32211   234799999999999988731                  1111111  


Q ss_pred             ----------CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC-----cCcHHHHHHHHccCCCCeEEEEe
Q 026547          122 ----------HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADK-----VNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       122 ----------~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~-----~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                                ..+++...+..+..      ....++||+|++-..-     ......++.+.+.|+|||+|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQ------YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSS------CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccc------cCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      12333333332211      1124789999986532     22357889999999999999985

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=1.1e-07  Score=75.19  Aligned_cols=105  Identities=10%  Similarity=-0.020  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH
Q 026547           55 APDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV  134 (237)
Q Consensus        55 ~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (237)
                      ++.....+...+...+++.|||||||.|..|..+++.   ..+|++||+++.+++..++.+.   ..++++++.+|+.++
T Consensus         6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~   79 (252)
T d1qyra_           6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhh
Confidence            4444455555666677889999999999999999985   4589999999999988877442   235799999999874


Q ss_pred             HH-HHhhcCCCCCceeEEEEeCCCcCcHHHHHHHH
Q 026547          135 LD-QLLKDSENEGSFDYAFVDADKVNYWNYHERLM  168 (237)
Q Consensus       135 ~~-~~~~~~~~~~~~D~i~id~~~~~~~~~~~~~~  168 (237)
                      -. .+.+.  ...++ .|+-+.+-.-..+.+..+.
T Consensus        80 ~~~~~~~~--~~~~~-~vvgNlPY~Iss~Il~~l~  111 (252)
T d1qyra_          80 NFGELAEK--MGQPL-RVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             CHHHHHHH--HTSCE-EEEEECCTTTHHHHHHHHH
T ss_pred             cccccccc--cCCCe-EEEecchHHHHHHHHHHhc
Confidence            22 22111  02334 4445555444445555543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=2e-06  Score=64.24  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHH--HHhhcCCCC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLD--QLLKDSENE  145 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~~  145 (237)
                      ..+..+|||+||+.|.++.++++.....++|+++|+.+-.           .+ +.+.++++|..+...  ..... ...
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i-~~~~~~~~d~~~~~~~~~~~~~-~~~   86 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PI-VGVDFLQGDFRDELVMKALLER-VGD   86 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CC-TTEEEEESCTTSHHHHHHHHHH-HTT
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------cc-CCceEeecccccchhhhhhhhh-ccC
Confidence            3467799999999999999999887767899999987621           22 458899998754221  11111 124


Q ss_pred             CceeEEEEeCCCcC--------------cHHHHHHHHccCCCCeEEEEeC
Q 026547          146 GSFDYAFVDADKVN--------------YWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       146 ~~~D~i~id~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      .++|+|+.|....-              ....+.-+.+.|++||.+|+--
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            78999999964311              1233445558999999999974

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.35  E-value=3.1e-06  Score=71.67  Aligned_cols=122  Identities=16%  Similarity=0.111  Sum_probs=92.6

Q ss_pred             CCccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCchHHHHHHHHHHh
Q 026547           50 AMMSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQIMAIDVNRETYEIGLPVIKK  117 (237)
Q Consensus        50 ~~~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~------------~~~v~~vD~~~~~~~~a~~~~~~  117 (237)
                      |...+++...++|..++....+.+|+|-.||+|.....+.+++..            ...++|+|+++.....|+-++.-
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            445567888999999988888899999999999998877665531            12499999999999999988877


Q ss_pred             cCCC-CcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc--------------------CcHHHHHHHHccCCCCeE
Q 026547          118 AGVD-HKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKV--------------------NYWNYHERLMKLLKVGGI  176 (237)
Q Consensus       118 ~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~--------------------~~~~~~~~~~~~L~~gG~  176 (237)
                      .|.. +..++..+|..+..        ...+||+|+.+.+-.                    ....+++.+.++|++||.
T Consensus       222 ~g~~~~~~~i~~~d~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~  293 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGR  293 (425)
T ss_dssp             TTCCSSCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             cCCccccceeecCchhhhh--------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCe
Confidence            7754 34567788876532        247899999874310                    124589999999999996


Q ss_pred             EEE
Q 026547          177 AVY  179 (237)
Q Consensus       177 lv~  179 (237)
                      +++
T Consensus       294 ~~i  296 (425)
T d2okca1         294 AAV  296 (425)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.20  E-value=6.4e-07  Score=70.20  Aligned_cols=76  Identities=9%  Similarity=0.141  Sum_probs=62.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCC--------CCcEEEEeccchHHHHHHhhcCC
Q 026547           72 KKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGV--------DHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .+|||+.+|.|.-+..+|..   +++|+++|.+|......+..++++..        ..+++++++|+.+++...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999975   57999999999888777776665432        237999999999998754     


Q ss_pred             CCCceeEEEEeCC
Q 026547          144 NEGSFDYAFVDAD  156 (237)
Q Consensus       144 ~~~~~D~i~id~~  156 (237)
                       .++||+|++|..
T Consensus       162 -~~~~DvIYlDPM  173 (250)
T d2oyra1         162 -TPRPQVVYLDPM  173 (250)
T ss_dssp             -SSCCSEEEECCC
T ss_pred             -CCCCCEEEECCC
Confidence             478999999963

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.98  E-value=6.3e-06  Score=61.10  Aligned_cols=107  Identities=18%  Similarity=0.180  Sum_probs=71.6

Q ss_pred             HHHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           64 MLLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ..+...++.+||-+|||. |..++.+++... ..+|+++|.+++..+.+++.    |...-++....+..+.+..+.   
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~l----Ga~~~i~~~~~~~~~~v~~~t---   92 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFY----GATDILNYKNGHIEDQVMKLT---   92 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHH----TCSEEECGGGSCHHHHHHHHT---
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhh----CccccccccchhHHHHHHHHh---
Confidence            345677888999999987 778888888754 35899999999988887653    532112222223333333331   


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ....+|+||-.....   ..++...+.++|+|.+++-..
T Consensus        93 -~g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          93 -NGKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             -TTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             -hccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEee
Confidence             135699987554333   456778899999999998654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.90  E-value=2.1e-05  Score=59.25  Aligned_cols=107  Identities=14%  Similarity=0.044  Sum_probs=75.1

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE---eccchHHHHHHhh
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI---ESEALSVLDQLLK  140 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~~  140 (237)
                      .+...++.+||-+|||. |..+..+++... ..+|+++|.+++.++.|++.    |.   ..++   ..+..+.+.++..
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~t~   91 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALLG   91 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHHS
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHHhC
Confidence            46778889999999998 657778888766 67999999999999887764    42   2233   2333333333321


Q ss_pred             cCCCCCceeEEEEeCCCc------------CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          141 DSENEGSFDYAFVDADKV------------NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                          ...+|++|-.....            ...+.++.+.+.++|||.+++-.+.
T Consensus        92 ----g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2          92 ----EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             ----SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             ----CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence                35799987543211            1357899999999999999987653

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.87  E-value=2.6e-05  Score=60.36  Aligned_cols=116  Identities=8%  Similarity=0.004  Sum_probs=69.4

Q ss_pred             ccHHHHHHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc
Q 026547           54 TAPDAGQLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA  131 (237)
Q Consensus        54 ~~~~~~~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (237)
                      +++...++....-+  ..+..+|+|+|||.|.++.+++...+ ...|.|+++--+..+. -......+. +-+++...+.
T Consensus        48 ~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~d  124 (257)
T d2p41a1          48 VSRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVD  124 (257)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCC
T ss_pred             cchHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccC-Ccccccccc-ccccchhhhh
Confidence            45555555443332  34556999999999999999987543 4577777762111000 000001111 2356665554


Q ss_pred             hHHHHHHhhcCCCCCceeEEEEeCCCcC---------cHHHHHHHHccCCCCeEEEEe
Q 026547          132 LSVLDQLLKDSENEGSFDYAFVDADKVN---------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       132 ~~~~~~~~~~~~~~~~~D~i~id~~~~~---------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ...++        ....|.|++|...+.         ....++.+.+.|+|||-+|+-
T Consensus       125 v~~l~--------~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         125 VFFIP--------PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             TTTSC--------CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             HHhcC--------CCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            33322        478999999975322         235677777999999998884

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.4e-05  Score=66.80  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=85.9

Q ss_pred             ccccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCchHHHHHHHH
Q 026547           52 MSTAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQIMAIDVNRETYEIGLPV  114 (237)
Q Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~-----------------~~~v~~vD~~~~~~~~a~~~  114 (237)
                      --+++...++|..++....+.+|+|-.||+|...+...+++..                 ...++|+|+++.....|+-+
T Consensus       146 fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n  225 (524)
T d2ar0a1         146 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN  225 (524)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred             hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence            3456788899988888888889999999999988766554321                 12589999999999999988


Q ss_pred             HHhcCCCCc----EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-----------------CcHHHHHHHHccCCC
Q 026547          115 IKKAGVDHK----INFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-----------------NYWNYHERLMKLLKV  173 (237)
Q Consensus       115 ~~~~~~~~~----v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-----------------~~~~~~~~~~~~L~~  173 (237)
                      +--.+....    -.+..++.......      ...+||+|+.+.+-.                 ....|++.+.+.|++
T Consensus       226 l~l~~~~~~i~~~~~~~~~~~l~~d~~------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~  299 (524)
T d2ar0a1         226 CLLHDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP  299 (524)
T ss_dssp             HHTTTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred             HHhhcccccccccchhhhhhhhhhccc------ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccc
Confidence            876664321    23444554332111      147899999874311                 023589999999999


Q ss_pred             CeEEEE
Q 026547          174 GGIAVY  179 (237)
Q Consensus       174 gG~lv~  179 (237)
                      ||.+++
T Consensus       300 gGr~ai  305 (524)
T d2ar0a1         300 GGRAAV  305 (524)
T ss_dssp             EEEEEE
T ss_pred             cCcEEE
Confidence            997544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.82  E-value=1.7e-05  Score=58.90  Aligned_cols=107  Identities=13%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             hhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCC
Q 026547           67 KLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENE  145 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  145 (237)
                      ...++++||-+|+|. |..++.++++.. ..+|+++|.+++.++.+++.    |.+.-++....+..+......+. ...
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~i~~~-~~~   98 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI----GADLTLNRRETSVEERRKAIMDI-THG   98 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHHHHHHHHH-TTT
T ss_pred             CCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccccc----cceEEEeccccchHHHHHHHHHh-hCC
Confidence            345678999999874 667778888864 34899999999998877653    53211222223333332222111 123


Q ss_pred             CceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ..+|+||-....   +..++...+.|++||.+++-.+
T Consensus        99 ~g~Dvvid~vG~---~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2          99 RGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             SCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCceEEeecCCc---hhHHHHHHHHhcCCCEEEEEee
Confidence            569998754433   3456778899999999987654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.79  E-value=3.8e-05  Score=56.63  Aligned_cols=104  Identities=19%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             HhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      ++..++.+||-+|+|.-. .+..+++... ..+|+.+|.++..++.+++.    |...-+.....|..+.+..+     .
T Consensus        24 ~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~i~~~-----t   93 (174)
T d1f8fa2          24 LKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEI-----T   93 (174)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHH-----T
T ss_pred             hCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc----CCeEEEeCCCcCHHHHHHHH-----c
Confidence            345677899999997533 5566777765 56889999999888887764    54221222222333333333     2


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .+.+|+||....   ....++.+.+.++++|.+++-..
T Consensus        94 ~gg~D~vid~~G---~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          94 DGGVNFALESTG---SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             TSCEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEEcCC---cHHHHHHHHhcccCceEEEEEee
Confidence            368999976543   34677888999999999987544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00014  Score=53.16  Aligned_cols=106  Identities=12%  Similarity=0.030  Sum_probs=68.8

Q ss_pred             HhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  143 (237)
                      +...++.+||-+|+|... .+..+++... ..+|+++|.++..++.|++.    |.. .+.... .+..+....+...  
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~-~~~~~~~~~~~~~~~~~~~~--   93 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GAD-LVLQISKESPQEIARKVEGQ--   93 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCS-EEEECSSCCHHHHHHHHHHH--
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCc-cccccccccccccccccccc--
Confidence            456677899999997644 5667777764 45899999999998877663    532 122222 2222222222111  


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+||-...   ....++...+.+++||.+++-..
T Consensus        94 ~g~g~Dvvid~~G---~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          94 LGCKPEVTIECTG---AEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HTSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCCceEEEeccC---CchhHHHHHHHhcCCCEEEEEec
Confidence            1357899875442   35678888999999999998654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=3.1e-05  Score=56.73  Aligned_cols=101  Identities=21%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~  143 (237)
                      +...++++||-+|+| .|..+..+++.+  +++|+++|.+++.++.+++.    |.+   +++. .+-.+.....     
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~-----   88 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKY-----   88 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHS-----
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhh-----
Confidence            456678899999998 566777788765  57999999999998887763    532   2232 1222333332     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       .+.+|+++..... .....++...+.|+++|.+++-.+
T Consensus        89 -~~~~d~vi~~~~~-~~~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          89 -FDTFDLIVVCASS-LTDIDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             -CSCEEEEEECCSC-STTCCTTTGGGGEEEEEEEEECCC
T ss_pred             -hcccceEEEEecC-CccchHHHHHHHhhccceEEEecc
Confidence             4789998754222 111234567799999999988653

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=9.4e-05  Score=59.96  Aligned_cols=76  Identities=9%  Similarity=0.039  Sum_probs=56.4

Q ss_pred             ccHHHHHHHHHHHhhc------CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEE
Q 026547           54 TAPDAGQLMAMLLKLV------NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~------~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      +++...+-+...+...      .+..|||||+|.|..|..++.... ..+|+++|+++.+.+..++.+.    .++++++
T Consensus        21 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii   95 (322)
T d1i4wa_          21 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQIL   95 (322)
T ss_dssp             CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEE
T ss_pred             CCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEE
Confidence            4555544444444432      456899999999999999987532 2489999999999998887653    2468999


Q ss_pred             eccchHH
Q 026547          128 ESEALSV  134 (237)
Q Consensus       128 ~~d~~~~  134 (237)
                      ++|+..+
T Consensus        96 ~~D~l~~  102 (322)
T d1i4wa_          96 KRDPYDW  102 (322)
T ss_dssp             CSCTTCH
T ss_pred             eCchhhc
Confidence            9998765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.58  E-value=0.0003  Score=51.15  Aligned_cols=104  Identities=12%  Similarity=0.132  Sum_probs=68.9

Q ss_pred             HhhcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec----cchHHHHHHhh
Q 026547           66 LKLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES----EALSVLDQLLK  140 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~~~~~~~~  140 (237)
                      +...++.+||-+|+| .|..++.+++..  +++|+++|.+++.++.+++.    |..  ..+...    +..+....+.+
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHH
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhc
Confidence            456678899999998 466777788875  46999999999998888774    321  222221    11122222211


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      .  ....+|+||-...   .+..++.+.+.++++|.+++-..
T Consensus        94 ~--~g~g~D~vid~~g---~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          94 A--IGDLPNVTIDCSG---NEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             H--SSSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             c--cccCCceeeecCC---ChHHHHHHHHHHhcCCceEEEec
Confidence            1  1367898865442   34677888899999999998653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=0.00017  Score=52.31  Aligned_cols=101  Identities=14%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSEN  144 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (237)
                      +...++++||-+|+|. |..+..+++..  +.+|+++|.+++.++.+++    .|.+   +++..+..+..+.....   
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~---   90 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRD---   90 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH---
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHh---
Confidence            5677788999999875 44566778775  4799999999988877765    3532   23332222232222111   


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|.++++...   ...++...+.|+++|.+++-.
T Consensus        91 ~~g~~~~i~~~~~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          91 IGGAHGVLVTAVS---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HSSEEEEEECCSC---HHHHHHHHTTEEEEEEEEECC
T ss_pred             hcCCccccccccc---chHHHHHHHHhcCCcEEEEEE
Confidence            2445555555433   456788889999999998854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.50  E-value=0.00021  Score=52.58  Aligned_cols=104  Identities=20%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc-chH-HHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE-ALS-VLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~-~~~~~~~~~  142 (237)
                      +...++.+||-+|||. |..++.+++.+. ..+|+.+|.+++..+.+++.    |...-++....| ... .....    
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~----   94 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL----GATDCLNPRELDKPVQDVITEL----   94 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh----CCCcccCCccchhhhhhhHhhh----
Confidence            4456778999999988 778888999876 56899999999988777763    532211111112 111 22222    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  182 (237)
                       ....+|++|-..   ..+..++...+.+++| |.+++-..
T Consensus        95 -~~~G~d~vie~~---G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          95 -TAGGVDYSLDCA---GTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             -HTSCBSEEEESS---CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -hcCCCcEEEEec---ccchHHHHHHHHhhcCCeEEEecCC
Confidence             136899997543   3356788888999996 99988554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00013  Score=53.56  Aligned_cols=101  Identities=16%  Similarity=0.123  Sum_probs=66.3

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .+..++++||-.|+  +.|..++.+++.+  +.+|++++.+++..+.+++    .|.+.-+.....|..+.+....    
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t----   93 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----   93 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----
T ss_pred             hCCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh----
Confidence            34557789999996  5667788888876  5799999988877666654    4643222222223333333321    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ....+|+|+-...    ...++...+.|+++|.++.-
T Consensus        94 ~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          94 GEKGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CTTCEEEEEESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             ccCCceEEeeccc----HHHHHHHHhccCCCCEEEEE
Confidence            2467998864332    35678888999999999874

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.39  E-value=0.00028  Score=51.38  Aligned_cols=105  Identities=19%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             HhhcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +...++++||-+|++  .|..++.+++... ..+|+++|.+++..+.+++.    |.+   .++..+..+..+...+. .
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~-~   93 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI-T   93 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH-T
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHH-h
Confidence            456677899999963  4556677777654 56999999999888877763    532   33333333333333221 1


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|+|+-..   .....++...+.++|||.+++-..
T Consensus        94 ~~~~~d~vid~~---g~~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          94 ESKGVDAVIDLN---NSEKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             TTSCEEEEEESC---CCHHHHTTGGGGEEEEEEEEECCS
T ss_pred             hcccchhhhccc---ccchHHHhhhhhcccCCEEEEecc
Confidence            236799886543   235667778899999999988653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.14  E-value=0.0014  Score=47.69  Aligned_cols=99  Identities=14%  Similarity=0.107  Sum_probs=65.1

Q ss_pred             hcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEec--cchHHHHHHhhcCCC
Q 026547           68 LVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIES--EALSVLDQLLKDSEN  144 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~~  144 (237)
                      ..+++.||-+|+|... .++.+++... ..+|+++|.+++.++.+++.    |..   +++..  |..+.....    ..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~----ga~---~~i~~~~~~~~~~~~~----~~   97 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMEL----TR   97 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHH----TT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc----ccc---eeecCcccHHHHHHHh----hC
Confidence            4567899999987644 4556777655 56899999999888777753    422   33332  222222222    12


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ...+|+||....   ....++...+.|++||.+++-.
T Consensus        98 ~~g~d~vid~~g---~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          98 GRGVNVAMDFVG---SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             TCCEEEEEESSC---CHHHHHHGGGGEEEEEEEEECC
T ss_pred             CCCceEEEEecC---cchHHHHHHHHHhCCCEEEEEe
Confidence            357999875543   2456788889999999999854

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.98  E-value=0.0021  Score=46.19  Aligned_cols=103  Identities=17%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             HHhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           65 LLKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .+...++++||-.|+|.-. .++.+++..  +.+|++++.+++.++.+++    .|...-+.....|..+.+...     
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~-----   90 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK-----   90 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH-----
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhcccc-----
Confidence            4566778899999998744 455666664  5689999999998877665    354211111122333333333     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                       ...+|.++++..   ....++...+.++++|.+++-..
T Consensus        91 -~~~~~~~v~~~~---~~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          91 -VGGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             -HSSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             -cCCCceEEeecC---CHHHHHHHHHHhccCCceEeccc
Confidence             244555555543   35678888999999999998643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.0055  Score=44.10  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .+...++++||-+|+|. |..+..+++.+  +.+++.+|.+++..+.+++    .|.+   .++.-.-.+....      
T Consensus        25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~----lGad---~~i~~~~~~~~~~------   89 (168)
T d1uufa2          25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAA------   89 (168)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHT------
T ss_pred             HhCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc----cCCc---EEEECchhhHHHH------
Confidence            35677888999999864 55677788875  5688899999988776665    3532   3333322222221      


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ....+|.++.......   .++...+.++++|.+++-..
T Consensus        90 ~~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          90 HLKSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             TTTCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECCC
T ss_pred             hcCCCceeeeeeecch---hHHHHHHHHhcCCEEEEecc
Confidence            1468999976654332   35667799999999998543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.94  E-value=0.0015  Score=47.75  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=65.2

Q ss_pred             HhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEecc--chHHHHHHhhcC
Q 026547           66 LKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESE--ALSVLDQLLKDS  142 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~  142 (237)
                      +...++++||-+|||... .++.+++... ..+|+++|.+++.++.+++    .|-..-++....|  ..+.....    
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~~~~~~~~~~----   93 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDKPIYEVICEK----   93 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchhHHHHHHHHh----
Confidence            456678899999998644 4556777665 5699999999999988876    3543222222223  12222222    


Q ss_pred             CCCCceeEEEEeCCCcCcHHHHHHHHccCC-CCeEEEEeCc
Q 026547          143 ENEGSFDYAFVDADKVNYWNYHERLMKLLK-VGGIAVYDNT  182 (237)
Q Consensus       143 ~~~~~~D~i~id~~~~~~~~~~~~~~~~L~-~gG~lv~~~~  182 (237)
                       ....+|.+|.....   ...++.....++ ++|.+++-..
T Consensus        94 -~~~G~d~vid~~g~---~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 -TNGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             -TTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -cCCCCcEEEEcCCC---chHHHHHHHHHHHhcCceEEEEE
Confidence             24679999866533   345555655555 4688887554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0014  Score=47.81  Aligned_cols=105  Identities=13%  Similarity=0.120  Sum_probs=67.2

Q ss_pred             HhhcCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~--G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      .+..++++||-.|++.  |..++.+++..  +++|++++.+++..+.+++    .|-..-+.....|..+.+..+-    
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~----lGa~~vi~~~~~d~~~~v~~~t----   93 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT----   93 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHh----cCCeEEEECCCCCHHHHHHHHh----
Confidence            3455678999986664  55677788764  5799999999998877765    3543222222334444443332    


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      ....+|+|+-... .   +.++.....++++|.+++-....
T Consensus        94 ~g~g~d~v~d~~g-~---~~~~~~~~~l~~~G~~v~~g~~~  130 (179)
T d1qora2          94 GGKKVRVVYDSVG-R---DTWERSLDCLQRRGLMVSFGNSS  130 (179)
T ss_dssp             TTCCEEEEEECSC-G---GGHHHHHHTEEEEEEEEECCCTT
T ss_pred             CCCCeEEEEeCcc-H---HHHHHHHHHHhcCCeeeeccccc
Confidence            2367897754332 2   34677889999999887754443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.91  E-value=0.002  Score=46.54  Aligned_cols=105  Identities=15%  Similarity=0.157  Sum_probs=70.3

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .+|.+|+-||+|. |..++..|..+  +++|+.+|.+++.++..+..+.     .++++...+.....+.+       ..
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~~   95 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV-------AE   95 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH-------HT
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh-------cc
Confidence            4688999999986 66788888876  5899999999999988777663     24666666554444444       56


Q ss_pred             eeEEEEeCC---CcCcHHHHHHHHccCCCCeEEEEeCcCCCCc
Q 026547          148 FDYAFVDAD---KVNYWNYHERLMKLLKVGGIAVYDNTLWGGT  187 (237)
Q Consensus       148 ~D~i~id~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~  187 (237)
                      .|+|+-..-   .....-.-+.+.+.+|||.+||=-.+-..|.
T Consensus        96 aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~  138 (168)
T d1pjca1          96 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGC  138 (168)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred             CcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCc
Confidence            899986431   1111112355668889988776434434443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.86  E-value=0.0046  Score=45.06  Aligned_cols=105  Identities=16%  Similarity=0.181  Sum_probs=64.4

Q ss_pred             hhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccc-hHHHHHHhhcCCC
Q 026547           67 KLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEA-LSVLDQLLKDSEN  144 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~  144 (237)
                      +..+++.||-+|+|... .++.+++... ..+|+++|.+++.++.|++.    |-...++....+. .+.......    
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~~----   96 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEMT----   96 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHhc----
Confidence            35667899999997644 5566777765 57999999999999988886    4322122222221 222222211    


Q ss_pred             CCceeEEEEeCCCcCcHHHHHHHHc-cCCCCeEEEEeCcC
Q 026547          145 EGSFDYAFVDADKVNYWNYHERLMK-LLKVGGIAVYDNTL  183 (237)
Q Consensus       145 ~~~~D~i~id~~~~~~~~~~~~~~~-~L~~gG~lv~~~~~  183 (237)
                      ...+|.++.....   ...++.... +++.+|.+++-...
T Consensus        97 g~G~d~vi~~~g~---~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          97 GNNVGYTFEVIGH---LETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             TSCCCEEEECSCC---HHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             cccceEEEEeCCc---hHHHHHHHHHhhcCCeEEEEEEcc
Confidence            3679988766533   334444444 44555888876543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.82  E-value=0.003  Score=45.56  Aligned_cols=88  Identities=17%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             CEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTI---PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      ++|+-||||.  .+..+|+.+   ....+|+++|.+++.++.+++.    +.   +.....+.....         ....
T Consensus         2 k~I~IIG~G~--mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~~---------~~~~   63 (171)
T d2g5ca2           2 QNVLIVGVGF--MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKVE---------DFSP   63 (171)
T ss_dssp             CEEEEESCSH--HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGGG---------GTCC
T ss_pred             CEEEEEccCH--HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhhh---------cccc
Confidence            3688899854  444444333   2245899999999988877763    32   211222221110         2467


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIA  177 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~l  177 (237)
                      |+|++..+.....+.++.+.+.++++.++
T Consensus        64 dlIila~p~~~~~~vl~~l~~~~~~~~ii   92 (171)
T d2g5ca2          64 DFVMLSSPVRTFREIAKKLSYILSEDATV   92 (171)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             ccccccCCchhhhhhhhhhhccccccccc
Confidence            99998887777788888888888876544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.0012  Score=48.38  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=63.4

Q ss_pred             HhhcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +...++++||-.|  .|.|..++.+|+..  +.+++++..+++..+.++    +.|.+   +++...-.++.+...+. .
T Consensus        21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~---~vi~~~~~~~~~~v~~~-t   90 (183)
T d1pqwa_          21 GRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADEILEL-T   90 (183)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHHHHHH-T
T ss_pred             hCCCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----ccccc---ccccCCccCHHHHHHHH-h
Confidence            3455678999877  34566777888775  578888888877665554    44643   22322222333332211 1


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ....+|+||....    .+.++.+.+.|+++|.++.-
T Consensus        91 ~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          91 DGYGVDVVLNSLA----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TTCCEEEEEECCC----THHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCEEEEEeccc----chHHHHHHHHhcCCCEEEEE
Confidence            2367999985443    24678888999999999874

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.57  E-value=0.0041  Score=44.97  Aligned_cols=102  Identities=17%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             HHhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe--ccchHHHHHHhhc
Q 026547           65 LLKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE--SEALSVLDQLLKD  141 (237)
Q Consensus        65 l~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~  141 (237)
                      .++..++.+||-.|+|. |..++.+++.+. ..+|+++|.+++..+.+++.    |...-+....  .+....+...   
T Consensus        23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~l----Ga~~~i~~~~~~~~~~~~~~~~---   94 (176)
T d2fzwa2          23 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GATECINPQDFSKPIQEVLIEM---   94 (176)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH---
T ss_pred             hhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHh----CCcEEEeCCchhhHHHHHHHHH---
Confidence            34566788999998873 235556777765 57999999999998877763    5432121111  1122222222   


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                        ....+|+||-...   ....++.+..++++||.+++
T Consensus        95 --~~~g~D~vid~~G---~~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 --TDGGVDYSFECIG---NVKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             --TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEE
T ss_pred             --cCCCCcEeeecCC---CHHHHHHHHHhhcCCceeEE
Confidence              2467999976543   34677888889999876654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.0082  Score=43.36  Aligned_cols=96  Identities=18%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             HhhcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCC
Q 026547           66 LKLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSE  143 (237)
Q Consensus        66 ~~~~~~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (237)
                      +...++++||-.|.  +.|..++.+++..  +.+|++++.+++..+.+++    .|.+.   ++  |..+.......   
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~---~i--~~~~~~~~~~~---   88 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE---AA--TYAEVPERAKA---   88 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE---EE--EGGGHHHHHHH---
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccce---ee--ehhhhhhhhhc---
Confidence            45667889999884  3356777888875  5799999999887776654    46432   12  22222222211   


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                       ...+|+||- ..-    +.++...+.|+++|.++.-.
T Consensus        89 -~~g~D~v~d-~~G----~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          89 -WGGLDLVLE-VRG----KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             -TTSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred             -ccccccccc-ccc----hhHHHHHHHHhcCCcEEEEe
Confidence             367999864 322    23577889999999988753

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.34  E-value=0.0042  Score=45.37  Aligned_cols=104  Identities=10%  Similarity=0.022  Sum_probs=66.2

Q ss_pred             HHHhhcCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhc
Q 026547           64 MLLKLVNAKKTIEIGVFTGY--SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKD  141 (237)
Q Consensus        64 ~l~~~~~~~~vLeiG~G~G~--~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  141 (237)
                      ..++..++++||-.|.+.|.  .++.+++..  +++|+++..+++..+.+++    .|...-+.....+..+......  
T Consensus        23 ~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~--   94 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA--   94 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH--
T ss_pred             HHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh--
Confidence            34556678899988886544  566778865  5799999988877665555    4532212111222222222221  


Q ss_pred             CCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          142 SENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                        ....+|+||- ..-   .+.++..++.|+++|.++.-.
T Consensus        95 --~~~Gvd~v~D-~vG---~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          95 --SPDGYDCYFD-NVG---GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             --CTTCEEEEEE-SSC---HHHHHHHGGGEEEEEEEEECC
T ss_pred             --hcCCCceeEE-ecC---chhhhhhhhhccCCCeEEeec
Confidence              2467999864 322   467889999999999998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.033  Score=42.76  Aligned_cols=83  Identities=11%  Similarity=0.063  Sum_probs=60.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.++..+...++.++++|..+      .+....++
T Consensus         8 lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            578899999987765 34444333 23789999999999999988888888776788888988754      22223222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+.+|+++.++
T Consensus        87 ---~g~iD~lVnnA   97 (257)
T d1xg5a_          87 ---HSGVDICINNA   97 (257)
T ss_dssp             ---HCCCSEEEECC
T ss_pred             ---cCCCCEEEecc
Confidence               37899988664

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.014  Score=42.75  Aligned_cols=105  Identities=11%  Similarity=0.082  Sum_probs=65.9

Q ss_pred             HHHhhcCC--CEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHh
Q 026547           64 MLLKLVNA--KKTIEIG--VFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLL  139 (237)
Q Consensus        64 ~l~~~~~~--~~vLeiG--~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (237)
                      ...+..++  +.||-.|  .|.|..++.+|+.+. ..+|+++..+++......   ...|.+.-++....+..+.+....
T Consensus        22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~---~~~gad~vi~~~~~~~~~~~~~~~   97 (187)
T d1vj1a2          22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLT---SELGFDAAVNYKTGNVAEQLREAC   97 (187)
T ss_dssp             HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHH---HHSCCSEEEETTSSCHHHHHHHHC
T ss_pred             HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhh---hcccceEEeeccchhHHHHHHHHh
Confidence            33444444  6799877  566788999999875 457888777765544332   234543223333334445554442


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                           .+.+|+|| |..-   .+.++...+.|+++|.++.-.
T Consensus        98 -----~~GvDvv~-D~vG---g~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          98 -----PGGVDVYF-DNVG---GDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             -----TTCEEEEE-ESSC---HHHHHHHHTTEEEEEEEEEC-
T ss_pred             -----ccCceEEE-ecCC---chhHHHHhhhccccccEEEec
Confidence                 36799996 4322   457888899999999998743

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.18  E-value=0.012  Score=42.57  Aligned_cols=100  Identities=15%  Similarity=0.294  Sum_probs=63.2

Q ss_pred             HhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe-ccch----HHHHHHh
Q 026547           66 LKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE-SEAL----SVLDQLL  139 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~-~d~~----~~~~~~~  139 (237)
                      ++..++++||-+|+|.+. .+..+++... ..+|+++|.+++..+.+++.    |..   +++. .+..    ...... 
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~~-   94 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV----GAT---ECVNPQDYKKPIQEVLTEM-   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCS---EEECGGGCSSCHHHHHHHH-
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh----CCe---eEEecCCchhHHHHHHHHH-
Confidence            456677899999996544 5556667665 67999999999998877764    432   2222 2211    222222 


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEeC
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~~  181 (237)
                          ..+.+|++|.....   ...++.....++++ |.+++-.
T Consensus        95 ----~~~G~D~vid~~G~---~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          95 ----SNGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             ----TTSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECS
T ss_pred             ----hcCCCCEEEecCCc---hhHHHHHHHHHhcCCcceEEec
Confidence                24689998765433   45566666777775 6666543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.15  E-value=0.012  Score=42.05  Aligned_cols=86  Identities=14%  Similarity=0.069  Sum_probs=55.9

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYA  151 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i  151 (237)
                      +|.-||+  |..+..+|+.+. .+-+|+++|.+++.++.+++    .+..+   ....+. +.          ....|+|
T Consensus         2 kI~iIG~--G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~-~~----------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGL--GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDL-SL----------LQTAKII   61 (165)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS---EEESCG-GG----------GTTCSEE
T ss_pred             EEEEEee--cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc---eeeeec-cc----------ccccccc
Confidence            5677877  544444444331 26699999999887776654    23321   112222 22          2678999


Q ss_pred             EEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          152 FVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       152 ~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      |+..+.....+.++++.+.++++.+++
T Consensus        62 ilavp~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             cccCcHhhhhhhhhhhhhhccccccee
Confidence            988777777888899988888877664

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.06  E-value=0.01  Score=42.71  Aligned_cols=100  Identities=15%  Similarity=0.238  Sum_probs=61.2

Q ss_pred             HhhcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEe---cc-chHHHHHHhh
Q 026547           66 LKLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIE---SE-ALSVLDQLLK  140 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d-~~~~~~~~~~  140 (237)
                      ++..++++||-+|+|.+. .+..+++... ..+|+++|.+++.++.+++    .|-+   +++.   .+ ..+.......
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~----~GAd---~~in~~~~~~~~~~~~~~~~   95 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMT   95 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHH
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH----cCCc---EEEcCCCcchhHHHHHHhhc
Confidence            456677899999998855 4455666554 6799999999999887765    3532   3332   11 1121111111


Q ss_pred             cCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCC-eEEEEe
Q 026547          141 DSENEGSFDYAFVDADKVNYWNYHERLMKLLKVG-GIAVYD  180 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~g-G~lv~~  180 (237)
                          ...+|+++-....   ...++.....+++| |++++-
T Consensus        96 ----~~G~d~vid~~G~---~~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          96 ----NGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             ----TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEEC
T ss_pred             ----cCCcceeeeecCC---HHHHHHHHHHhhCCCcceeEE
Confidence                3679999765533   34556666666665 555543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.02  E-value=0.0088  Score=45.59  Aligned_cols=53  Identities=11%  Similarity=0.140  Sum_probs=41.6

Q ss_pred             HHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHH
Q 026547           61 LMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIK  116 (237)
Q Consensus        61 ~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~  116 (237)
                      ++..++.  ..++..|||.-+|+|..+....+.   +-+.+|+|++++.++.|+++++
T Consensus       201 L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            4444443  346789999999999987766553   4589999999999999999875

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.89  E-value=0.033  Score=38.06  Aligned_cols=92  Identities=15%  Similarity=0.131  Sum_probs=58.3

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCcee
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSFD  149 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~D  149 (237)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.+   +    +.++.||+.+  .+...     +....|
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---~----~~vi~Gd~~~~~~l~~~-----~i~~a~   67 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---D----ALVINGDCTKIKTLEDA-----GIEDAD   67 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---S----SEEEESCTTSHHHHHHT-----TTTTCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---h----hhhccCcccchhhhhhc-----Chhhhh
Confidence            5777776  888888777653 3568999999999887765532   2    5788999765  44333     246788


Q ss_pred             EEEEeCCCcCcHHHHHHHHccCCCCeEEE
Q 026547          150 YAFVDADKVNYWNYHERLMKLLKVGGIAV  178 (237)
Q Consensus       150 ~i~id~~~~~~~~~~~~~~~~L~~gG~lv  178 (237)
                      .+++-.......-......+.+.+.-+++
T Consensus        68 ~vv~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          68 MYIAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hhcccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            87764333222223333445666765554

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.80  E-value=0.015  Score=42.59  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             HhhcCCCEEEEE--cc-cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH---Hh
Q 026547           66 LKLVNAKKTIEI--GV-FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ---LL  139 (237)
Q Consensus        66 ~~~~~~~~vLei--G~-G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~  139 (237)
                      +...++..||-+  |+ |.|..++.+|+.+  +.+|+++-.+++..+...+.+++.|-+..+..-..+..++.+.   ..
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            344556678777  32 2466777888885  5788888777777777777777888643222211222222221   11


Q ss_pred             hcCCCCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      ..  ....+|+|| |...   .+.++...+.|+++|.++.-.
T Consensus       102 ~~--~g~~vdvv~-D~vg---~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQ--SGGEAKLAL-NCVG---GKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HH--HTCCEEEEE-ESSC---HHHHHHHHHTSCTTCEEEECC
T ss_pred             hh--ccCCceEEE-ECCC---cchhhhhhhhhcCCcEEEEEC
Confidence            00  135789987 4322   345677889999999998754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.59  E-value=0.018  Score=44.30  Aligned_cols=57  Identities=7%  Similarity=-0.008  Sum_probs=44.3

Q ss_pred             HHHHHHHh--hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcC
Q 026547           60 QLMAMLLK--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAG  119 (237)
Q Consensus        60 ~~l~~l~~--~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  119 (237)
                      +++..++.  ..++..|||.-+|+|..+......   +-+.+|+|++++..+.|+++++...
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            34444443  346789999999999987776654   4499999999999999999997653

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.44  E-value=0.0048  Score=47.57  Aligned_cols=107  Identities=10%  Similarity=0.029  Sum_probs=73.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC---CC------------------------------------CCEEEEEeCCchHHHH
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI---PE------------------------------------DGQIMAIDVNRETYEI  110 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~---~~------------------------------------~~~v~~vD~~~~~~~~  110 (237)
                      .+..++|--||+|++.+..|-..   ++                                    ..++++.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999988655321   10                                    1356788888888888


Q ss_pred             H---HHHHHhcCCCCcEEEEeccchHHHH--HHhhcCCCCCceeEEEEeCC--------Cc----CcHHHHHHHHccCCC
Q 026547          111 G---LPVIKKAGVDHKINFIESEALSVLD--QLLKDSENEGSFDYAFVDAD--------KV----NYWNYHERLMKLLKV  173 (237)
Q Consensus       111 a---~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~~~~~D~i~id~~--------~~----~~~~~~~~~~~~L~~  173 (237)
                      |   +++++.+|+...+++.+.|..+..+  ...    ....+++|+++.+        ..    .+..++..+.+.+..
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~----~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~  205 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL----AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA  205 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH----TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhcc----CCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCC
Confidence            7   5688999999999999999865432  221    1367889998843        11    134555666677776


Q ss_pred             CeEEEEe
Q 026547          174 GGIAVYD  180 (237)
Q Consensus       174 gG~lv~~  180 (237)
                      ..++++.
T Consensus       206 ~s~~~it  212 (249)
T d1o9ga_         206 HAVIAVT  212 (249)
T ss_dssp             TCEEEEE
T ss_pred             CcEEEEe
Confidence            6666654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.36  E-value=0.011  Score=46.44  Aligned_cols=48  Identities=6%  Similarity=-0.056  Sum_probs=39.6

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKA  118 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  118 (237)
                      ..++..|||.-||+|..+......   +-+.+|+|++++.++.|++++.+.
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhc
Confidence            356789999999999987765553   459999999999999999887554

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.13  E-value=0.03  Score=45.92  Aligned_cols=52  Identities=15%  Similarity=0.142  Sum_probs=43.3

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHHHHHhcC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLPVIKKAG  119 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~  119 (237)
                      ..+...++|||+-.|..+..++...+. ..+|+++|++|...+..+++++..+
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            445679999999999999988776542 3699999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.11  E-value=0.043  Score=39.29  Aligned_cols=96  Identities=11%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             CEEEEEcccccHHHH--HHHhhCCCCCEEEEEeCCchHHHHHHHHHHhc--CCCCcEE----EEeccchHHHHHHhhcCC
Q 026547           72 KKTIEIGVFTGYSLL--LTALTIPEDGQIMAIDVNRETYEIGLPVIKKA--GVDHKIN----FIESEALSVLDQLLKDSE  143 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~--~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~----~~~~d~~~~~~~~~~~~~  143 (237)
                      ++|--||+|.-..++  .|++   .+.+|+.+|.+++.++..++.-...  .......    ....|..+.   +     
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~---~-----   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL---KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V-----   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H-----
T ss_pred             CEEEEECccHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhH---h-----
Confidence            578888987655433  3333   2569999999998887666532110  0000111    111222222   2     


Q ss_pred             CCCceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          144 NEGSFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       144 ~~~~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                        ...|+|++-.........++++.+.|+++.++++.
T Consensus        71 --~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 --KDADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             --TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             --cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence              67899999887777889999999999999887754

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=94.98  E-value=0.36  Score=37.59  Aligned_cols=111  Identities=9%  Similarity=0.025  Sum_probs=69.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCC--CcEEEEeccchHH-HHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVD--HKINFIESEALSV-LDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~-~~~~~~~~~~~  145 (237)
                      ..++.|+.+|||  .-|..+-...+.+.+++=|| -|+.++.-++.+++.+..  .+.+++..|..+. ...+.+.++..
T Consensus        88 ~g~~qvV~LGaG--lDTr~~Rl~~~~~~~~~EvD-~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~  164 (297)
T d2uyoa1          88 DGIRQFVILASG--LDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDP  164 (297)
T ss_dssp             TTCCEEEEETCT--TCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred             hCCCeEEEeCcc--cCChhhhcCCCcCceEEEcC-ChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCC
Confidence            346788889885  44444433334466788888 488888888888887653  4566777776653 34444332222


Q ss_pred             CceeEEEEeC-----CCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          146 GSFDYAFVDA-----DKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       146 ~~~D~i~id~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      ...-+++.-+     .......+++.+..+..+|..|+++-+
T Consensus       165 ~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         165 SARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             TSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3333333333     223346788888888999999999854

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.88  E-value=0.038  Score=40.20  Aligned_cols=48  Identities=25%  Similarity=0.214  Sum_probs=38.9

Q ss_pred             HhhcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHH
Q 026547           66 LKLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVI  115 (237)
Q Consensus        66 ~~~~~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~  115 (237)
                      +...+|.+||-||.|. |..++..|..+  +++|+.+|.++..++..+...
T Consensus        24 ~g~V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~   72 (183)
T d1l7da1          24 AGTVPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLG   72 (183)
T ss_dssp             TEEECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTT
T ss_pred             cCCcCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhh
Confidence            3345788999999996 66788888876  579999999999988877654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.73  E-value=0.064  Score=36.35  Aligned_cols=91  Identities=11%  Similarity=0.062  Sum_probs=59.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCceeE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSFDY  150 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~D~  150 (237)
                      +|+-+|  .|..+..+++.+. +..|+.+|.+++..+..+.    .|    +.++.||+.+  .+...     ..++.+.
T Consensus         2 HivI~G--~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~----~~----~~~i~Gd~~~~~~L~~a-----~i~~A~~   65 (129)
T d2fy8a1           2 HVVICG--WSESTLECLRELR-GSEVFVLAEDENVRKKVLR----SG----ANFVHGDPTRVSDLEKA-----NVRGARA   65 (129)
T ss_dssp             CEEEES--CCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHH----TT----CEEEESCTTSHHHHHHT-----TCTTCSE
T ss_pred             EEEEEC--CCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHh----cC----ccccccccCCHHHHHHh-----hhhcCcE
Confidence            455555  4888999999885 6678999999998765543    23    6889999865  33332     2467888


Q ss_pred             EEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          151 AFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       151 i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      +++........-..-...+.+.|...+++
T Consensus        66 vi~~~~~d~~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          66 VIVNLESDSETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHCSSSCEEE
T ss_pred             EEEeccchhhhHHHHHHHHHHCCCceEEE
Confidence            87765433222233334467777765554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.15  Score=39.13  Aligned_cols=104  Identities=16%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             CCEE-EEEcccccHHHHHHHhhCC--CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           71 AKKT-IEIGVFTGYSLLLTALTIP--EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        71 ~~~v-LeiG~G~G~~~~~la~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      +++| |-.|+..| ++..+++.+.  .+.+|+..+.+++.++.+.+.++..+.  ++.++.+|..+      +.....++
T Consensus         2 g~rVAlVTGas~G-IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKG-IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSH-HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCH-HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh
Confidence            4566 55665544 4555544432  156999999999999999888887764  57888888654      22223222


Q ss_pred             CCCCCceeEEEEeCCCcC-------cH---------------HHHHHHHccCCCCeEEEEe
Q 026547          142 SENEGSFDYAFVDADKVN-------YW---------------NYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       142 ~~~~~~~D~i~id~~~~~-------~~---------------~~~~~~~~~L~~gG~lv~~  180 (237)
                         .+++|+++.++....       ..               ...+.+.+.|+++|.|+.-
T Consensus        79 ---~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          79 ---YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             ---HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ---cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence               378999987754211       01               2334445788888887653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.19  E-value=0.024  Score=43.57  Aligned_cols=52  Identities=15%  Similarity=0.197  Sum_probs=40.0

Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCC----------cCc----HHHHHHHHccCCCCeEEEEe
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADK----------VNY----WNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~----------~~~----~~~~~~~~~~L~~gG~lv~~  180 (237)
                      -.++.+|+++.+..+.     ++++|+|+.|.+-          ..+    ...++.+.++|+++|.+++.
T Consensus         5 ~~~~~~D~le~l~~l~-----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLP-----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEECCHHHHHHTSC-----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEechHHHHHhhCc-----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            3578899999999873     5899999998642          122    45567788999999988874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.15  E-value=0.027  Score=42.65  Aligned_cols=51  Identities=16%  Similarity=0.242  Sum_probs=39.0

Q ss_pred             EEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc----------C-------cHHHHHHHHccCCCCeEEEEe
Q 026547          125 NFIESEALSVLDQLLKDSENEGSFDYAFVDADKV----------N-------YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       125 ~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~----------~-------~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      ++++||+++.+..+.     ++++|+|+.|.+-.          .       ....++++.++|+|||.+++.
T Consensus         6 ~i~~gDcle~l~~lp-----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE-----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHSC-----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc-----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            479999999999873     57999999985421          1       224567788999999988764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.038  Score=43.70  Aligned_cols=73  Identities=15%  Similarity=0.071  Sum_probs=49.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPEDG-QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      |.+|+|+.||.|..++.|-.+.- +. .+.++|+++.+++..+.++      +...++.+|+.+.......    ...+|
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~----~~~~D   70 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFD----RLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHH----HHCCS
T ss_pred             CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcC----CCCcc
Confidence            56899999999998877755421 22 3679999998888777664      2245677887765433221    14689


Q ss_pred             EEEEe
Q 026547          150 YAFVD  154 (237)
Q Consensus       150 ~i~id  154 (237)
                      +++..
T Consensus        71 ll~gg   75 (343)
T d1g55a_          71 MILMS   75 (343)
T ss_dssp             EEEEC
T ss_pred             EEEee
Confidence            98754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.42  E-value=0.037  Score=43.26  Aligned_cols=52  Identities=19%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             EEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCc-------------C----cHHHHHHHHccCCCCeEEEEe
Q 026547          124 INFIESEALSVLDQLLKDSENEGSFDYAFVDADKV-------------N----YWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       124 v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~-------------~----~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      =.+++||+++.+..+.     .+++|+|+.|.+-.             .    +.+.+..+.++|+++|.++++
T Consensus        13 ~~l~~GD~le~l~~l~-----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          13 GSMYIGDSLELLESFP-----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             EEEEESCHHHHGGGSC-----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEehhHHHHHhhCc-----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            4789999999998873     58999999985421             0    234577778999999998874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.47  Score=35.69  Aligned_cols=79  Identities=14%  Similarity=0.135  Sum_probs=55.9

Q ss_pred             CCCEEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           70 NAKKTIEIGVFTGY---SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        70 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      .++.+|-.|++.|-   .+..|++   .+.+|+.++.+++.++...+.+...|  .++..+.+|..+.      +....+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~---~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAK---LKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            57888999987775   2334444   37899999999999988888887766  4688888887552      222222


Q ss_pred             cCCCCCceeEEEEeCC
Q 026547          141 DSENEGSFDYAFVDAD  156 (237)
Q Consensus       141 ~~~~~~~~D~i~id~~  156 (237)
                      +   .+..|+++.++.
T Consensus        81 ~---~g~idilinnag   93 (244)
T d1yb1a_          81 E---IGDVSILVNNAG   93 (244)
T ss_dssp             H---TCCCSEEEECCC
T ss_pred             H---cCCCceeEeecc
Confidence            2   478999887643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.19  E-value=0.11  Score=40.45  Aligned_cols=94  Identities=12%  Similarity=-0.016  Sum_probs=62.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      +|||+-||.|..++-+-.+-  --.+.++|+++...+..+.++   +    -.++.+|..+.....      ....|+++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG--~~~~~a~e~d~~a~~~~~~N~---~----~~~~~~Di~~~~~~~------~~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNH---S----AKLIKGDISKISSDE------FPKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT--CEEEEEEECCHHHHHHHHHHC---C----SEEEESCTTTSCGGG------SCCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHC---C----CCCccCChhhCCHhH------cccccEEe
Confidence            69999999999988776641  224679999998887777764   2    256778887753321      36789997


Q ss_pred             EeCCCcC-----------------cHHHHHHHHccCCCCeEEEEeCcC
Q 026547          153 VDADKVN-----------------YWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       153 id~~~~~-----------------~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      ...+.+.                 +.++++ +.+.++| -++++.|+.
T Consensus        67 ~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~P-k~~~lENV~  112 (324)
T d1dcta_          67 GGPPCQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKP-IFFLAENVK  112 (324)
T ss_dssp             ECCCCTTTSSSSCCCCSSSHHHHHHHHHHH-HHHHHCC-SEEEEEEEG
T ss_pred             ecccccccccccccccccccccchHHHHHH-HHHhhCC-ceeeccccc
Confidence            6422111                 122333 3367788 578888874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.16  E-value=0.21  Score=38.03  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             cCCCEEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHh
Q 026547           69 VNAKKTIEIGVFTGY---SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLL  139 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~  139 (237)
                      .+++.+|-.|.+.|-   .+..|++   .+.+|+.+|.+++.++.+.+.+...+...++..+++|..+      .+....
T Consensus         2 l~gK~alITGas~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~   78 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAA---EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT   78 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHH
Confidence            357889999987664   2334444   3789999999999998888877766655578888888643      222222


Q ss_pred             hcCCCCCceeEEEEeC
Q 026547          140 KDSENEGSFDYAFVDA  155 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~  155 (237)
                      ++   .+++|+++.++
T Consensus        79 ~~---~G~iDiLVnnA   91 (258)
T d1iy8a_          79 ER---FGRIDGFFNNA   91 (258)
T ss_dssp             HH---HSCCSEEEECC
T ss_pred             HH---hCCCCEEEECC
Confidence            22   37899988664

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.07  E-value=0.05  Score=37.02  Aligned_cols=93  Identities=16%  Similarity=0.041  Sum_probs=53.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~  148 (237)
                      ++++-+|+  |..+..+++.+. .+..|+.+|.+++.++.++.    .+    ..++.+|+.+  .+...     +....
T Consensus         1 k~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a-----~i~~a   65 (134)
T d2hmva1           1 KQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSL-----GIRNF   65 (134)
T ss_dssp             CCEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHH-----TGGGC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC----Ccceeeecccchhhhcc-----CCccc
Confidence            34666766  676776666553 25689999999998876543    22    3567788755  44433     13567


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      |.+++..........+-...+.+.+...++.
T Consensus        66 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          66 EYVIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             cEEEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence            8887765433222333233333344445544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.19  Score=34.79  Aligned_cols=98  Identities=13%  Similarity=0.006  Sum_probs=57.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCc
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGS  147 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~  147 (237)
                      ..+|+-+|+  |..+..+++.+. .+..|+.+|.+++......+....    ..+.++.||+.+  .+...     +.+.
T Consensus         3 knHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a-----~i~~   71 (153)
T d1id1a_           3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKA-----GIDR   71 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHH-----TTTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHh-----cccc
Confidence            346777777  566666655442 256899999998765433333322    247889999766  34433     2467


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVY  179 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~  179 (237)
                      .|.+++........-..-...+.+.|...+++
T Consensus        72 a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          72 CRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             CSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CCEEEEccccHHHHHHHHHHHHHhCCCCceEE
Confidence            88888765432222222233355666665554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.75  E-value=0.63  Score=35.01  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=56.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~  142 (237)
                      .++.+|-.|.+.| .+..+++.+. .+.+|+.++.+++.++.+.+.++..+.  ++.++.+|..+      ......++ 
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~-   84 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTE-   84 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHh-
Confidence            5778888896655 5566665553 367999999999999888888877663  58888888754      22233232 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+++|+++.++
T Consensus        85 --~g~iDilvnna   95 (251)
T d2c07a1          85 --HKNVDILVNNA   95 (251)
T ss_dssp             --CSCCCEEEECC
T ss_pred             --cCCceeeeecc
Confidence              47899888654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.19  Score=38.19  Aligned_cols=83  Identities=17%  Similarity=0.169  Sum_probs=55.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~  142 (237)
                      +++.+|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+.+.....++.++.+|..+      .+....++ 
T Consensus         2 ~GKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   79 (254)
T d2gdza1           2 NGKVALVTGAAQGI-GRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH-   79 (254)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH-
Confidence            57889999976654 44444433 23789999999999888887777554334578888888654      22222222 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+++|+++.++.
T Consensus        80 --~G~iDilVnnAg   91 (254)
T d2gdza1          80 --FGRLDILVNNAG   91 (254)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --cCCcCeeccccc
Confidence              378999887654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.74  E-value=0.079  Score=38.21  Aligned_cols=99  Identities=9%  Similarity=0.026  Sum_probs=60.6

Q ss_pred             cCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           69 VNAKKTIEIGVFTGY--SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~--~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      .++.+||-.|.+.|.  .++.+++..  +++|+++--+++..+.+++    .|-+.-++ ...+..+.....     ..+
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~----lGa~~vi~-~~~~~~~~~~~~-----~~~   97 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLA-REDVMAERIRPL-----DKQ   97 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEE-CC---------C-----CSC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHh----cccceeee-cchhHHHHHHHh-----hcc
Confidence            346789999865554  566778774  6899999998888877765    35332121 111111221111     247


Q ss_pred             ceeEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          147 SFDYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       147 ~~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      .+|+|+-....    ..++...+.|++||.++.-...
T Consensus        98 gvD~vid~vgg----~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          98 RWAAAVDPVGG----RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CEEEEEECSTT----TTHHHHHHTEEEEEEEEECSCC
T ss_pred             CcCEEEEcCCc----hhHHHHHHHhCCCceEEEeecc
Confidence            89987643322    2467788999999999886554

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=92.60  E-value=0.8  Score=30.13  Aligned_cols=78  Identities=6%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCC
Q 026547           96 GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKV  173 (237)
Q Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~  173 (237)
                      .+|..||-++...+..+..++..|+  .+. ...+..+.+..+.+    ..+||+|++|...+.  -.++++.+++.-+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~~----~~~~dliilD~~lp~~~G~el~~~ir~~~~~   75 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGA--EVT-VHPSGSAFFQHRSQ----LSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ   75 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHTGGG----GGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCC--CeE-EECCHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            5899999999999999999999886  233 34455565554432    257999999976544  35677777654333


Q ss_pred             CeEEEEe
Q 026547          174 GGIAVYD  180 (237)
Q Consensus       174 gG~lv~~  180 (237)
                      =.++++.
T Consensus        76 ~pii~lt   82 (118)
T d2b4aa1          76 PSVLILT   82 (118)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            3566664

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.04  E-value=0.27  Score=37.68  Aligned_cols=83  Identities=25%  Similarity=0.284  Sum_probs=57.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchH------HHHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALS------VLDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~~~~~~~  140 (237)
                      .+++++|-.|++.|- +..+++.+. .+.+|+.+|.+++.++.+.+.+...+.. .++..+.+|..+      ......+
T Consensus         2 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGI-GRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            367889999977664 444433331 3679999999999999988888887653 478889988644      2222222


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      +   .+++|+++..+
T Consensus        81 ~---~G~iDilVnnA   92 (274)
T d1xhla_          81 K---FGKIDILVNNA   92 (274)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---cCCceEEEeec
Confidence            2   36899998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.38  Score=36.45  Aligned_cols=81  Identities=19%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.++.+++.++.+.+.++..|  .++.++++|..+.      .....++
T Consensus         9 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           9 LDGKCAIITGAGAGI-GKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CTTCEEEETTTTSHH-HHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367889988876554 44444443 236899999999999998888888766  3588888886542      2222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++..+
T Consensus        86 ---~g~iDilvnnA   96 (255)
T d1fmca_          86 ---LGKVDILVNNA   96 (255)
T ss_dssp             ---HSSCCEEEECC
T ss_pred             ---cCCCCEeeeCC
Confidence               37899888764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=91.93  E-value=0.17  Score=39.60  Aligned_cols=96  Identities=9%  Similarity=-0.030  Sum_probs=63.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCcee
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFD  149 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D  149 (237)
                      .+.+|||+-||.|..++.|-++ + --.+.++|+++.+++..+.++..        ..++|..+.....      ...+|
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~------~~~~D   73 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKT------IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGG------SCCCS
T ss_pred             CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhh------cceee
Confidence            4579999999999998887654 2 23567899999999988888721        1257776653322      36789


Q ss_pred             EEEEeCCC----------------c-CcHHHHHHHHccCCCCeEEEEeCcC
Q 026547          150 YAFVDADK----------------V-NYWNYHERLMKLLKVGGIAVYDNTL  183 (237)
Q Consensus       150 ~i~id~~~----------------~-~~~~~~~~~~~~L~~gG~lv~~~~~  183 (237)
                      +++...+.                . .+..+++. .+.++| -++++.|+.
T Consensus        74 ll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~-i~~~kP-~~~~lENV~  122 (327)
T d2c7pa1          74 ILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARI-VREKKP-KVVFMENVK  122 (327)
T ss_dssp             EEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHH-HHHHCC-SEEEEEEEG
T ss_pred             eeecccccchhhhhhhhcCCcccchhHHHHHHHH-HhccCC-cEEecccch
Confidence            99864221                1 12334433 367788 577888874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.91  E-value=0.34  Score=36.82  Aligned_cols=81  Identities=28%  Similarity=0.393  Sum_probs=55.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.+|.+++.++.+.+.++..|.  ++..+.+|..+      .+....++
T Consensus         3 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            468899999976654 33333332 1368999999999999988888877663  58888888643      22222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+.+|+++..+
T Consensus        80 ---~g~iDilVnna   90 (260)
T d1zema1          80 ---FGKIDFLFNNA   90 (260)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---hCCCCeehhhh
Confidence               37899988654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.74  E-value=0.29  Score=37.46  Aligned_cols=83  Identities=23%  Similarity=0.300  Sum_probs=57.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchH------HHHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALS------VLDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~~~~~~~  140 (237)
                      .+++.+|-.|.+.|- +..+++.+. .+.+|+.++.+++.++.+.+.+++.+.. .++.++.+|..+      .+....+
T Consensus         3 L~gK~alVTGas~GI-G~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGI-GRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            467889999976654 344443331 3679999999999999999988877653 468889988654      2222222


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      +   .+++|+++.++
T Consensus        82 ~---~g~iDilvnnA   93 (272)
T d1xkqa_          82 Q---FGKIDVLVNNA   93 (272)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCceEEEeCC
Confidence            2   37899998763

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.39  E-value=0.15  Score=41.15  Aligned_cols=64  Identities=13%  Similarity=0.133  Sum_probs=42.8

Q ss_pred             cccHHHHHHHHHHHh-----hc--CCCEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCchHHHHHHHHHH
Q 026547           53 STAPDAGQLMAMLLK-----LV--NAKKTIEIGVFTGYSLLLTALTIP------EDGQIMAIDVNRETYEIGLPVIK  116 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~-----~~--~~~~vLeiG~G~G~~~~~la~~~~------~~~~v~~vD~~~~~~~~a~~~~~  116 (237)
                      .+++..++.+.....     ..  ++.+|||+|+|.|..+.-+++.+.      ...+++.+|.++...+.-++.+.
T Consensus        55 ~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          55 EISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            344555555543321     22  234899999999999887766543      24579999999987766666554

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.96  E-value=0.71  Score=34.75  Aligned_cols=79  Identities=18%  Similarity=0.214  Sum_probs=54.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcCC
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDSE  143 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~  143 (237)
                      ++.+|-.|.+.|- +..+++.+. .+.+|+.++.+++.++.+.+.++..+.  ++.++.+|..+      ......++  
T Consensus         2 gKValITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~--   76 (257)
T d2rhca1           2 SEVALVTGATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVER--   76 (257)
T ss_dssp             CCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHH--
Confidence            5667888866554 444444332 367999999999999988888887764  58888888644      22233332  


Q ss_pred             CCCceeEEEEeC
Q 026547          144 NEGSFDYAFVDA  155 (237)
Q Consensus       144 ~~~~~D~i~id~  155 (237)
                       .+++|+++.++
T Consensus        77 -~g~iDilVnnA   87 (257)
T d2rhca1          77 -YGPVDVLVNNA   87 (257)
T ss_dssp             -TCSCSEEEECC
T ss_pred             -hCCCCEEEecc
Confidence             47899988664

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.88  E-value=1.1  Score=33.50  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=51.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHH-HhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVI-KKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      +++.+|-.|.+.|- +..+++.+ ..+.+|+.++.+++.++.+.+.+ +..|  .++.++.+|..+      ......++
T Consensus         4 ~gK~~lITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGL-GFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            57899999977654 33333333 13689999999988876665554 4444  357788888653      22332222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++.++
T Consensus        81 ---~g~iDiLVnnA   91 (251)
T d1vl8a_          81 ---FGKLDTVVNAA   91 (251)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCEEEECC
Confidence               37899998764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.88  E-value=0.51  Score=35.77  Aligned_cols=83  Identities=23%  Similarity=0.242  Sum_probs=56.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCC-CcEEEEeccchH------HHHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVD-HKINFIESEALS------VLDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~------~~~~~~~  140 (237)
                      .+++.+|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. .++.++.+|..+      .+....+
T Consensus         3 l~gKvalVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGI-GRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            367888888876654 34444333 23789999999999999888888877643 468899988743      2222222


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      +   .+++|+++.++
T Consensus        82 ~---~g~iDilvnnA   93 (264)
T d1spxa_          82 K---FGKLDILVNNA   93 (264)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCCCEeeccc
Confidence            2   37899887654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.86  E-value=1.9  Score=32.52  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCC-chHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVN-RETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~  140 (237)
                      .+++.+|-.|+..|. +..+++.+ ..+.+|+..+.+ .+.++.+.+.+++.+.  ++.++++|..+      .+....+
T Consensus        16 L~gK~~lITGas~GI-G~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            467899999987664 34443333 136799999876 4566777777777664  57888888654      2222222


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      .   .+.+|+++...
T Consensus        93 ~---~g~idilV~na  104 (272)
T d1g0oa_          93 I---FGKLDIVCSNS  104 (272)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCCCcccccc
Confidence            2   37889887653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.74  E-value=1.5  Score=32.78  Aligned_cols=81  Identities=14%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEE-eCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAI-DVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~  140 (237)
                      ..++.||-.|.+ +..+..+++.+. .+.+|+.. ..+.+.++.+.+.+...|.  ++.++++|..+      .+....+
T Consensus         4 L~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            467889988855 445555554442 35678764 5677778888888888774  58888888754      2333332


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      +   .+.+|.++..+
T Consensus        81 ~---~g~idilinna   92 (259)
T d1ja9a_          81 H---FGGLDFVMSNS   92 (259)
T ss_dssp             H---HSCEEEEECCC
T ss_pred             H---cCCCcEEEecc
Confidence            2   47899988654

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.68  E-value=1.4  Score=28.86  Aligned_cols=79  Identities=10%  Similarity=0.139  Sum_probs=54.4

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLK  172 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~  172 (237)
                      +-+|..||-++...+..+..++..|+.  +. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+.+.-.
T Consensus         1 nirILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~g~~~~~~lr~~~~   72 (122)
T d1kgsa2           1 NVRVLVVEDERDLADLITEALKKEMFT--VD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRESGV   72 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHTTC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EEcchHHHHHHHH-----hhCccccccccccccchhHHHHHHHHhcCC
Confidence            358999999999999999999998862  43 4566767666553     268999999976544  3456666654322


Q ss_pred             CCeEEEEeC
Q 026547          173 VGGIAVYDN  181 (237)
Q Consensus       173 ~gG~lv~~~  181 (237)
                      .--+|++..
T Consensus        73 ~~piI~lt~   81 (122)
T d1kgsa2          73 NTPVLMLTA   81 (122)
T ss_dssp             CCCEEEEES
T ss_pred             CCcEEEEcC
Confidence            223555543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.46  E-value=0.83  Score=34.36  Aligned_cols=77  Identities=21%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcCCCC
Q 026547           73 KTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDSENE  145 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~~~~  145 (237)
                      .+|-.|.+.|. +..+++.+ ..+.+|+.++.+++.++.+.+.++..+.  ++.++++|..+      ......++   .
T Consensus         3 ValITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~---~   76 (255)
T d1gega_           3 VALVTGAGQGI-GKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKT---L   76 (255)
T ss_dssp             EEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH---T
T ss_pred             EEEEcCCccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH---h
Confidence            45777866554 44444433 2367999999999999988888887763  58888888754      22333332   4


Q ss_pred             CceeEEEEeC
Q 026547          146 GSFDYAFVDA  155 (237)
Q Consensus       146 ~~~D~i~id~  155 (237)
                      +++|+++.++
T Consensus        77 g~iDilVnnA   86 (255)
T d1gega_          77 GGFDVIVNNA   86 (255)
T ss_dssp             TCCCEEEECC
T ss_pred             CCccEEEecc
Confidence            7899998654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.17  E-value=1.4  Score=31.12  Aligned_cols=92  Identities=11%  Similarity=0.116  Sum_probs=49.7

Q ss_pred             EEEEEcccc-cHHHHHHHhhCCCCCEEEEE-eCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           73 KTIEIGVFT-GYSLLLTALTIPEDGQIMAI-DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        73 ~vLeiG~G~-G~~~~~la~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +|.-||||. |..-+......+ +.+++++ |.+++..+   +..++.+......+ ..|..+.+.        ...+|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~---~~~~~~~~~~~~~~-~~~~~~ll~--------~~~iD~   69 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAK---AFATANNYPESTKI-HGSYESLLE--------DPEIDA   69 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHH---HHHHHTTCCTTCEE-ESSHHHHHH--------CTTCCE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCccccc---cchhccccccceee-cCcHHHhhh--------ccccce
Confidence            577899974 433223334444 6788876 77766543   33344555433333 445555544        367999


Q ss_pred             EEEeCCCcCcHHHHHHHHccCCCCeEEEEe
Q 026547          151 AFVDADKVNYWNYHERLMKLLKVGGIAVYD  180 (237)
Q Consensus       151 i~id~~~~~~~~~~~~~~~~L~~gG~lv~~  180 (237)
                      |++..+.....++   +...|+.|=-+++.
T Consensus        70 v~I~tp~~~h~~~---~~~~l~~g~~v~~E   96 (184)
T d1ydwa1          70 LYVPLPTSLHVEW---AIKAAEKGKHILLE   96 (184)
T ss_dssp             EEECCCGGGHHHH---HHHHHTTTCEEEEC
T ss_pred             eeecccchhhcch---hhhhhhccceeecc
Confidence            9987654433333   33344444444443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=1.1  Score=33.38  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=50.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~  142 (237)
                      +++.+|-.|.+.|. +..+++.+ ..+.+|+.++.+++.++...+.+.     .+...+.+|..+      .+....++ 
T Consensus         3 ~gK~alITGas~GI-G~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~-   75 (243)
T d1q7ba_           3 EGKIALVTGASRGI-GRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE-   75 (243)
T ss_dssp             TTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc-
Confidence            57788888876654 44444333 236799999999988877666552     346777877643      22333332 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .++.|+++..+
T Consensus        76 --~g~iDilVnnA   86 (243)
T d1q7ba_          76 --FGEVDILVNNA   86 (243)
T ss_dssp             --TCSCSEEEECC
T ss_pred             --cCCcceehhhh
Confidence              47899988654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.06  E-value=0.39  Score=36.28  Aligned_cols=64  Identities=8%  Similarity=0.020  Sum_probs=45.3

Q ss_pred             CCCEEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           70 NAKKTIEIGVFTGY---SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        70 ~~~~vLeiG~G~G~---~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      .++.+|-.|.+.|.   .+..||+...++.+|+.++.+++.++.+.+.+...+...++.++.+|..+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            45666777776654   22334443344789999999999998888887766555678999998755

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.77  E-value=1.5  Score=32.66  Aligned_cols=77  Identities=12%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             CCCEEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHH
Q 026547           70 NAKKTIEIGVF----TGY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQL  138 (237)
Q Consensus        70 ~~~~vLeiG~G----~G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~  138 (237)
                      +++.+|-.|++    .|. .+..|++   .+.+|+..+.++...+.+.+.....+   +..++++|..+      .+...
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~---~Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~   80 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKE---AGAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAGV   80 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHHH
Confidence            67899999964    344 3334554   36799999999887777776655544   35667777643      22222


Q ss_pred             hhcCCCCCceeEEEEeC
Q 026547          139 LKDSENEGSFDYAFVDA  155 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~  155 (237)
                      .+.   .+++|+++..+
T Consensus        81 ~~~---~g~iDilVnna   94 (256)
T d1ulua_          81 KEA---FGGLDYLVHAI   94 (256)
T ss_dssp             HHH---HSSEEEEEECC
T ss_pred             HHh---cCCceEEEecc
Confidence            222   37899887553

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.70  E-value=0.69  Score=30.44  Aligned_cols=52  Identities=15%  Similarity=0.109  Sum_probs=37.7

Q ss_pred             hhcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC--------CchHHHHHHHHHHhcCC
Q 026547           67 KLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDV--------NRETYEIGLPVIKKAGV  120 (237)
Q Consensus        67 ~~~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~--------~~~~~~~a~~~~~~~~~  120 (237)
                      ....|++|+-+|.  |+.++.+|..+. .+.+|+.++.        ++++.+.+++.+++.|+
T Consensus        18 ~l~~p~~v~IiGg--G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          18 NIKESKKIGIVGS--GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             TCCCCSEEEEECC--SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCEEEEECC--chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            4456899999998  566666655442 2679999996        45667888888888774

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=89.66  E-value=0.51  Score=35.90  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~  141 (237)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.+|.+++.++.+.+.+..   ..++.++.+|..+.      +....++
T Consensus         4 L~gKvalITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGGI-GETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            467899999977664 44444433 2367999999999888776666533   34588888886542      2222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|.++..+
T Consensus        80 ---~g~iD~lVnnA   90 (268)
T d2bgka1          80 ---HGKLDIMFGNV   90 (268)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCcceecccc
Confidence               37899998654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.58  E-value=1.1  Score=33.74  Aligned_cols=81  Identities=11%  Similarity=0.114  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~  142 (237)
                      +++.+|-.|.+.|. +..+++.+. .+.+|+.+|.+++.++.+.+.+...+  .++.++.+|..+      .+....++ 
T Consensus         7 ~GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   82 (259)
T d2ae2a_           7 EGCTALVTGGSRGI-GYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH-   82 (259)
T ss_dssp             TTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH-
Confidence            68899999977654 344443331 36799999999999988888887766  367888888643      22222222 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                       ...+.|+++..+
T Consensus        83 -~~~~idilvnnA   94 (259)
T d2ae2a_          83 -FHGKLNILVNNA   94 (259)
T ss_dssp             -TTTCCCEEEECC
T ss_pred             -hCCCceEEEECC
Confidence             124799998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.56  E-value=0.81  Score=32.75  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccch--HHHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEAL--SVLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~~~~~~  145 (237)
                      .++++||-.|.+.|. +..+++.+ ..+.+|+.++.+++.++...+.+.....   +.+...|..  +.+...      .
T Consensus        21 l~gK~vlItGasgGI-G~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~------~   90 (191)
T d1luaa1          21 VKGKKAVVLAGTGPV-GMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETADDASRAEA------V   90 (191)
T ss_dssp             CTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECCSHHHHHHH------T
T ss_pred             CCCCEEEEECCCHHH-HHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc---hhhhhhhcccHHHHHHH------h
Confidence            378899999965543 33333222 1367999999999998887777765432   233333332  233333      3


Q ss_pred             CceeEEEEeCC
Q 026547          146 GSFDYAFVDAD  156 (237)
Q Consensus       146 ~~~D~i~id~~  156 (237)
                      +..|+++..+.
T Consensus        91 ~~iDilin~Ag  101 (191)
T d1luaa1          91 KGAHFVFTAGA  101 (191)
T ss_dssp             TTCSEEEECCC
T ss_pred             cCcCeeeecCc
Confidence            77899887643

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.43  E-value=0.17  Score=36.03  Aligned_cols=98  Identities=16%  Similarity=0.090  Sum_probs=61.3

Q ss_pred             CCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           71 AKKTIEIGV--FTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        71 ~~~vLeiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      +..||--|.  |.|..++.+|+.+  +++|+++.-+++..+.+++.    |.+   .++..  .+........ ...+.+
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~l----Gad---~vi~~--~~~~~~~~~~-~~~~gv   91 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQL----GAS---EVISR--EDVYDGTLKA-LSKQQW   91 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHH----TCS---EEEEH--HHHCSSCCCS-SCCCCE
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhh----ccc---ceEec--cchhchhhhc-ccCCCc
Confidence            456888775  4455677888875  57999999998887776553    532   12221  1211111000 124679


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCcCC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNTLW  184 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  184 (237)
                      |+|+-...    .+.++...+.|+++|.+++-....
T Consensus        92 d~vid~vg----g~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          92 QGAVDPVG----GKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             EEEEESCC----THHHHHHHTTEEEEEEEEECCCSS
T ss_pred             eEEEecCc----HHHHHHHHHHhccCceEEEeeccC
Confidence            99864332    346788889999999999865543

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.01  E-value=1.4  Score=29.31  Aligned_cols=80  Identities=13%  Similarity=0.244  Sum_probs=52.4

Q ss_pred             CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHH---hhcCCCCCceeEEEEeCCCcCc--HHHHHHHHcc
Q 026547           96 GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQL---LKDSENEGSFDYAFVDADKVNY--WNYHERLMKL  170 (237)
Q Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~~~~~~~~~D~i~id~~~~~~--~~~~~~~~~~  170 (237)
                      .+|..+|-++...+..+..++..|.. .|+. ..|..+.+..+   ...   ..+||+|++|...+..  .+..+.+++.
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~-~v~~-a~~g~eAl~~l~~~~~~---~~~~dlillD~~mP~~dG~el~~~ir~~   76 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIE-NIEL-ACDGQEAFDKVKELTSK---GENYNMIFMDVQMPKVDGLLSTKMIRRD   76 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCC-CEEE-ESSHHHHHHHHHHHHHH---TCCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCe-EEEE-EcChHHHHHHHHhhhhc---cCCCCEEEEEeCCCCCCHHHHHHHHHHc
Confidence            37899999999999999999998864 2443 34554444332   222   4789999999765543  4667777654


Q ss_pred             CCCCe-EEEEe
Q 026547          171 LKVGG-IAVYD  180 (237)
Q Consensus       171 L~~gG-~lv~~  180 (237)
                      ..+.- +|++.
T Consensus        77 ~~~~~piI~lT   87 (128)
T d2r25b1          77 LGYTSPIVALT   87 (128)
T ss_dssp             SCCCSCEEEEE
T ss_pred             cCCCCeEEEEE
Confidence            44444 44443

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=88.97  E-value=2  Score=27.99  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=53.2

Q ss_pred             CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCC
Q 026547           96 GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKV  173 (237)
Q Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~  173 (237)
                      .+|.-+|-++...+..+..++..|+  ++.....+..+.+..+..     ..||+|++|...+.  -.++++.+.+. .+
T Consensus         2 krILivDD~~~~~~~l~~~L~~~g~--~v~~~a~~~~~al~~~~~-----~~~dliilD~~mp~~~G~e~~~~ir~~-~~   73 (118)
T d1u0sy_           2 KRVLIVDDAAFMRMMLKDIITKAGY--EVAGEATNGREAVEKYKE-----LKPDIVTMDITMPEMNGIDAIKEIMKI-DP   73 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHH-----HCCSEEEEECSCGGGCHHHHHHHHHHH-CT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC--ceEEEECCHHHHHHHHHh-----ccCCEEEEecCCCCCCHHHHHHHHHHh-CC
Confidence            4899999999999999999998885  243345677776666542     57999999976543  34666666543 34


Q ss_pred             Ce-EEEEe
Q 026547          174 GG-IAVYD  180 (237)
Q Consensus       174 gG-~lv~~  180 (237)
                      .- ++++.
T Consensus        74 ~~pvi~ls   81 (118)
T d1u0sy_          74 NAKIIVCS   81 (118)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            33 45554

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.94  E-value=0.35  Score=37.92  Aligned_cols=80  Identities=15%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~  145 (237)
                      .++++||-+| |+|+.+.++++.+- .+.+|++++.++.....   .+......++++++.+|..+.  +.....    .
T Consensus         6 ~~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~---~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~----~   77 (356)
T d1rkxa_           6 WQGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS---LFETARVADGMQSEIGDIRDQNKLLESIR----E   77 (356)
T ss_dssp             HTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC---HHHHTTTTTTSEEEECCTTCHHHHHHHHH----H
T ss_pred             hCCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHH---HHhhhhcccCCeEEEeeccChHhhhhhhh----h
Confidence            5789999999 57998888776652 35689999987654322   223333456799999997653  223222    1


Q ss_pred             CceeEEEEeCC
Q 026547          146 GSFDYAFVDAD  156 (237)
Q Consensus       146 ~~~D~i~id~~  156 (237)
                      ..+|.|+..+.
T Consensus        78 ~~~~~v~~~aa   88 (356)
T d1rkxa_          78 FQPEIVFHMAA   88 (356)
T ss_dssp             HCCSEEEECCS
T ss_pred             chhhhhhhhhc
Confidence            45677765543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=88.58  E-value=0.69  Score=32.93  Aligned_cols=93  Identities=13%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             CCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           71 AKKTIEIGVF--TGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        71 ~~~vLeiG~G--~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      +..||-.|..  .|..++.+++.+  +.+|+++.-+++..+.+++.    |.   -.++.-+-.+....+     ....+
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l-----~~~~~   97 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPL-----EKQVW   97 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSS-----CCCCE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHH-----HhhcC
Confidence            3578876643  445677888886  57999999999987766543    43   233332222221111     13568


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeC
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDN  181 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~  181 (237)
                      |.+ +|..-   .+.++...+.|+++|.++.-.
T Consensus        98 ~~v-vD~Vg---g~~~~~~l~~l~~~Griv~~G  126 (177)
T d1o89a2          98 AGA-IDTVG---DKVLAKVLAQMNYGGCVAACG  126 (177)
T ss_dssp             EEE-EESSC---HHHHHHHHHTEEEEEEEEECC
T ss_pred             Cee-EEEcc---hHHHHHHHHHhccccceEeec
Confidence            886 46533   457888999999999998854

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=88.28  E-value=1  Score=34.61  Aligned_cols=76  Identities=16%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEe-CCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCCce
Q 026547           73 KTIEIGVFTGYSLLLTALTI-PEDGQIMAID-VNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEGSF  148 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD-~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~~~  148 (237)
                      +||-.| |+|+.+.++.+.+ ..+.+|+++| ++......-...+..   ..+++++.+|..+  .+....+.    .++
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~----~~~   73 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITK----YMP   73 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHH----HCC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHh----cCC
Confidence            688777 6899998877665 2367999998 333322221222222   2468999999865  33333221    467


Q ss_pred             eEEEEeCC
Q 026547          149 DYAFVDAD  156 (237)
Q Consensus       149 D~i~id~~  156 (237)
                      |.|+.-+.
T Consensus        74 d~Vih~aa   81 (338)
T d1orra_          74 DSCFHLAG   81 (338)
T ss_dssp             SEEEECCC
T ss_pred             ceEEeecc
Confidence            99986543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=0.56  Score=36.63  Aligned_cols=77  Identities=19%  Similarity=0.312  Sum_probs=45.9

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH--HHHHhhcCCCCCcee
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV--LDQLLKDSENEGSFD  149 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~~~D  149 (237)
                      +||-+| |+|+.+.++++.+- .+.+|+++|.............+... ..+++++++|..+.  +....+    ..++|
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~----~~~~d   75 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILH----DHAID   75 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHH----HTTCS
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHh----ccCCC
Confidence            688888 79999998877662 35689999852222111111121111 13689999997663  222221    24789


Q ss_pred             EEEEeC
Q 026547          150 YAFVDA  155 (237)
Q Consensus       150 ~i~id~  155 (237)
                      .|+--+
T Consensus        76 ~ViHlA   81 (338)
T d1udca_          76 TVIHFA   81 (338)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            997544

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.19  E-value=0.67  Score=36.11  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=50.2

Q ss_pred             hcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc----hHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcC
Q 026547           68 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR----ETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDS  142 (237)
Q Consensus        68 ~~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  142 (237)
                      ..++++||-+| |+|+.+.++.+.+. .+-+|+++|...    ..+...+........ .+++++.+|..+.......  
T Consensus        13 ~~~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~~~~~--   88 (341)
T d1sb8a_          13 PAQPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW-SNFKFIQGDIRNLDDCNNA--   88 (341)
T ss_dssp             HHSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHH-TTEEEEECCTTSHHHHHHH--
T ss_pred             CCCCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhccc-CCeeEEeeccccccccccc--
Confidence            34678999998 79999998877662 356999999522    222222222211111 3589999998875543322  


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        ....+.|+..+
T Consensus        89 --~~~~~~v~~~~   99 (341)
T d1sb8a_          89 --CAGVDYVLHQA   99 (341)
T ss_dssp             --HTTCSEEEECC
T ss_pred             --ccccccccccc
Confidence              25566665543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.01  E-value=0.65  Score=36.98  Aligned_cols=78  Identities=17%  Similarity=0.114  Sum_probs=45.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc-----------------hHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR-----------------ETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~-----------------~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      +++||-.| |+|+.+.++++.+- .+-+|+++|.-.                 ...+.....-...+  .+++++.+|..
T Consensus         1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTG--KSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHC--CCCEEEESCTT
T ss_pred             CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcC--CCcEEEEccCC
Confidence            46899888 59999988877662 367999998311                 11111111111112  46899999986


Q ss_pred             H--HHHHHhhcCCCCCceeEEEEeC
Q 026547          133 S--VLDQLLKDSENEGSFDYAFVDA  155 (237)
Q Consensus       133 ~--~~~~~~~~~~~~~~~D~i~id~  155 (237)
                      +  .+....+.    -++|.|+--+
T Consensus        78 d~~~l~~~~~~----~~~d~ViHlA   98 (393)
T d1i24a_          78 DFEFLAESFKS----FEPDSVVHFG   98 (393)
T ss_dssp             SHHHHHHHHHH----HCCSEEEECC
T ss_pred             CHHHHHHHHHh----hcchheeccc
Confidence            5  33333221    3679887544

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=1.4  Score=34.00  Aligned_cols=84  Identities=10%  Similarity=0.097  Sum_probs=54.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcC---CCCcEEEEeccchH------HHHHH
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAG---VDHKINFIESEALS------VLDQL  138 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~------~~~~~  138 (237)
                      .+++.+|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+....   ...++.++.+|..+      .+...
T Consensus        10 L~gKvalITGas~GI-G~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGI-GKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            578899999977664 34444333 236899999999988887777665431   12468888888654      22222


Q ss_pred             hhcCCCCCceeEEEEeCC
Q 026547          139 LKDSENEGSFDYAFVDAD  156 (237)
Q Consensus       139 ~~~~~~~~~~D~i~id~~  156 (237)
                      .+.   .+++|+++.++.
T Consensus        89 ~~~---~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDT---FGKINFLVNNGG  103 (297)
T ss_dssp             HHH---HSCCCEEEECCC
T ss_pred             HHH---hCCeEEEEeecc
Confidence            222   368999887643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.80  E-value=0.99  Score=33.86  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+.   ...++.++.+|..+      ......+.
T Consensus         4 L~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGTLGI-GLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467889998966654 44444333 136899999999988877776653   23568899988754      22222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++..+
T Consensus        80 ---~G~iDiLVnnA   90 (251)
T d1zk4a1          80 ---FGPVSTLVNNA   90 (251)
T ss_dssp             ---HSSCCEEEECC
T ss_pred             ---hCCceEEEecc
Confidence               37899887654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.78  E-value=3.9  Score=30.07  Aligned_cols=77  Identities=14%  Similarity=0.079  Sum_probs=48.0

Q ss_pred             cCCCEEEEEcccc--c--H-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHH
Q 026547           69 VNAKKTIEIGVFT--G--Y-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQ  137 (237)
Q Consensus        69 ~~~~~vLeiG~G~--G--~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~  137 (237)
                      ..+++||-.|+++  |  . .+..|++   .+.+|+..+.+++..+.+.+.....+.   ......|..+      ....
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~---~G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   76 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHR---EGAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDVAEDASIDTMFAE   76 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH---TTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHhhcCC---cceeecccchHHHHHHHHHH
Confidence            4688999998765  4  2 3345554   377999999998888877777666553   3334433322      2222


Q ss_pred             HhhcCCCCCceeEEEEe
Q 026547          138 LLKDSENEGSFDYAFVD  154 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id  154 (237)
                      ...   .....|.++..
T Consensus        77 ~~~---~~~~~d~~v~~   90 (258)
T d1qsga_          77 LGK---VWPKFDGFVHS   90 (258)
T ss_dssp             HHT---TCSSEEEEEEC
T ss_pred             hhh---cccccceEEEe
Confidence            222   25788888755

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=87.77  E-value=0.067  Score=37.54  Aligned_cols=95  Identities=13%  Similarity=0.005  Sum_probs=56.6

Q ss_pred             CEEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCc--EEEEeccchHHHHHHhhcCCCCCc
Q 026547           72 KKTIEIGVFT-GY-SLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHK--INFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        72 ~~vLeiG~G~-G~-~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .+|+-||+|. |. .+..|++.   +..|+.++.+++..+..+    ..+....  ...+..+..+.          .+.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~---G~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~   63 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ---GHEVQGWLRVPQPYCSVN----LVETDGSIFNESLTANDPDF----------LAT   63 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT---TCEEEEECSSCCSEEEEE----EECTTSCEEEEEEEESCHHH----------HHT
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCceEEEEcCHHHhhhhc----cccCCccccccccccchhhh----------hcc
Confidence            3688899966 22 22334442   568999998875332111    1111111  11222222221          267


Q ss_pred             eeEEEEeCCCcCcHHHHHHHHccCCCCeEEEE-eCcC
Q 026547          148 FDYAFVDADKVNYWNYHERLMKLLKVGGIAVY-DNTL  183 (237)
Q Consensus       148 ~D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~-~~~~  183 (237)
                      +|+||+-.......+.++.+.+.+.++..++. .|-+
T Consensus        64 ~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~qNG~  100 (167)
T d1ks9a2          64 SDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGM  100 (167)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEECSSS
T ss_pred             cceEEEeecccchHHHHHhhccccCcccEEeeccCcc
Confidence            99999998888888999999999998876554 4543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=1.2  Score=33.25  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=50.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENE  145 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~  145 (237)
                      ..++++|-.|.+.| .+..+++.+ ..+.+|+.+|.+++.++...+.+   +   .+..++.|..+  .+....++   .
T Consensus         5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~d~~~v~~~~~~---~   74 (244)
T d1pr9a_           5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC---P---GIEPVCVDLGDWEATERALGS---V   74 (244)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHTT---C
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHHH---h
Confidence            46789999997765 344444443 23679999999988776555432   2   36777878654  23333333   4


Q ss_pred             CceeEEEEeC
Q 026547          146 GSFDYAFVDA  155 (237)
Q Consensus       146 ~~~D~i~id~  155 (237)
                      +++|+++..+
T Consensus        75 g~iDilVnnA   84 (244)
T d1pr9a_          75 GPVDLLVNNA   84 (244)
T ss_dssp             CCCCEEEECC
T ss_pred             CCceEEEecc
Confidence            7899887654

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=87.36  E-value=0.48  Score=36.30  Aligned_cols=112  Identities=12%  Similarity=0.143  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHH
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQ  137 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  137 (237)
                      ...++..+...+.. .-+..-+|+-.++..+++   +.-+++.+|+.|+-.+..++++.   -..++.+.+.|..+.+..
T Consensus        71 ~~~yl~~v~~~n~~-~~l~~YPGSP~ia~~llR---~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~a  143 (271)
T d2oo3a1          71 FLEYISVIKQINLN-STLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNA  143 (271)
T ss_dssp             GHHHHHHHHHHSSS-SSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCcCcCCCCHHHHHHhCC---CCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHh
Confidence            34444444444332 234556666666655555   46799999999998887776653   245799999999998877


Q ss_pred             HhhcCCCCCceeEEEEeCCC---cCcHHHHHHHHccCC--CCeEEEE
Q 026547          138 LLKDSENEGSFDYAFVDADK---VNYWNYHERLMKLLK--VGGIAVY  179 (237)
Q Consensus       138 ~~~~~~~~~~~D~i~id~~~---~~~~~~~~~~~~~L~--~gG~lv~  179 (237)
                      +.   ++.++=-+|+||.+-   ..+....+.+.+.++  +.|++++
T Consensus       144 ll---PP~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~i  187 (271)
T d2oo3a1         144 LL---PPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  187 (271)
T ss_dssp             HC---SCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             hC---CCCCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            63   224666799999753   334444444444444  5677665

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.32  E-value=1.4  Score=29.55  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcCc--HHHHHHHHc
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVNY--WNYHERLMK  169 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~--~~~~~~~~~  169 (237)
                      +.+|..||-++......++.++..|.  .+. ...+..+.+..+      ...||+|++|...+..  .+..+.+.+
T Consensus         7 g~rILvVDD~~~~~~~l~~~L~~~G~--~v~-~a~~g~eal~~l------~~~~dlillD~~mP~~dG~el~~~ir~   74 (134)
T d1dcfa_           7 GLKVLVMDENGVSRMVTKGLLVHLGC--EVT-TVSSNEECLRVV------SHEHKVVFMDVCMPGVENYQIALRIHE   74 (134)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHC------CTTCSEEEEECCSSTTTTTHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHh------hcCCCeEEEEeccCCCchHHHHHHHHH
Confidence            56999999999999999999999886  243 456677777654      3579999999765442  355666653

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=87.13  E-value=6.1  Score=31.53  Aligned_cols=127  Identities=10%  Similarity=0.112  Sum_probs=78.5

Q ss_pred             cccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CchHHHHHHHHHHhcCCCCcEEEEec-c
Q 026547           53 STAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDV-NRETYEIGLPVIKKAGVDHKINFIES-E  130 (237)
Q Consensus        53 ~~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~v~~~~~-d  130 (237)
                      ...|....+-..++.+..+..++-..+|..-.+..+...++++.+|++.+. -.......++.+...|+  .+.++.. |
T Consensus        55 ~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi--~~~~~d~~d  132 (391)
T d1cl1a_          55 RGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPLI  132 (391)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTTC
T ss_pred             CCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccc--ccccccCcc
Confidence            356778888888888888888998888777666555555565778777764 33445555666666665  3555543 3


Q ss_pred             chHHHHHHhhcCCCCCceeEEEEeCCC------cCcHHHHHHHHccCCCCeEEEEeCcCCCCcc
Q 026547          131 ALSVLDQLLKDSENEGSFDYAFVDADK------VNYWNYHERLMKLLKVGGIAVYDNTLWGGTV  188 (237)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~D~i~id~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~  188 (237)
                      ..++...+      .+..++|++-...      .+.+.. ..+.+.-++|..+++||.+.....
T Consensus       133 ~~~~~~~i------~~~t~~i~~EtpsNP~l~v~Di~~i-~~~a~~~~~g~~~vVDnT~atP~~  189 (391)
T d1cl1a_         133 GADIVKHL------QPNTKIVFLESPGSITMEVHDVPAI-VAAVRSVVPDAIIMIDNTWAAGVL  189 (391)
T ss_dssp             GGGGGGTC------CTTEEEEEEESSCTTTCCCCCHHHH-HHHHHHHCTTCEEEEECTTTTTTS
T ss_pred             cccccccc------ccccceeeecccCcccccccccHHH-HHHHHhccCCcEEEEeccccchhh
Confidence            33332222      4678899986432      222222 333333456889999998754433

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=86.98  E-value=2.7  Score=27.30  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=53.0

Q ss_pred             CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCC
Q 026547           96 GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKV  173 (237)
Q Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~  173 (237)
                      .+|..||-++......++.++..|+.  +. ...+..+.+..+..     .+||+|++|...+.  -.++++.+.+. .+
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~~~~-----~~~dlillD~~mP~~~G~el~~~lr~~-~~   72 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGYQ--TF-QAANGLQALDIVTK-----ERPDLVLLDMKIPGMDGIEILKRMKVI-DE   72 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHHH-----HCCSEEEEESCCTTCCHHHHHHHHHHH-CT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCE--EE-EeCCHHHHHHHHHh-----CCCCEEEEeccCCCCCHHHHHHHHHHh-CC
Confidence            48999999999999999999988862  32 45566666655532     57999999976544  34677777543 34


Q ss_pred             C-eEEEEe
Q 026547          174 G-GIAVYD  180 (237)
Q Consensus       174 g-G~lv~~  180 (237)
                      + -++++.
T Consensus        73 ~~pvi~lt   80 (119)
T d1peya_          73 NIRVIIMT   80 (119)
T ss_dssp             TCEEEEEE
T ss_pred             CCcEEEEe
Confidence            4 355554

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.71  E-value=1.4  Score=33.17  Aligned_cols=82  Identities=15%  Similarity=0.059  Sum_probs=54.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~  142 (237)
                      +++.+|-.|.+.|- +..+++.+ ..+.+|+.++.+++.++.+.+.+...+.  ++..+.+|..+      .+....++ 
T Consensus         7 kgK~alVTGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~-   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGI-GHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM-   82 (259)
T ss_dssp             TTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH-
Confidence            67899999977664 33333333 1377999999999999888888776653  58888888653      22222211 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                       ..+.+|+++.++.
T Consensus        83 -~~g~idilvnnAG   95 (259)
T d1xq1a_          83 -FGGKLDILINNLG   95 (259)
T ss_dssp             -HTTCCSEEEEECC
T ss_pred             -hCCCccccccccc
Confidence             0257999987643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.47  E-value=2.6  Score=27.59  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc---------hHHHHHHHHHHhcCCCCcEEEE
Q 026547           58 AGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR---------ETYEIGLPVIKKAGVDHKINFI  127 (237)
Q Consensus        58 ~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~---------~~~~~a~~~~~~~~~~~~v~~~  127 (237)
                      .+..+.......++++|+-+|.  |+.++.+|..+. .+.+|+.+|..+         +..+..++.+++.|    ++++
T Consensus        17 da~~i~~~~~~~~~k~vvViGg--G~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~g----v~~~   90 (123)
T d1nhpa2          17 WAIKLKQKTVDPEVNNVVVIGS--GYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANN----ITIA   90 (123)
T ss_dssp             HHHHHHHHHTCTTCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTT----EEEE
T ss_pred             HHHHHHHHhhccCCCEEEEECC--hHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCC----eEEE
Confidence            3444445555556789999977  666666655442 257899998654         33455566666655    5665


Q ss_pred             ecc
Q 026547          128 ESE  130 (237)
Q Consensus       128 ~~d  130 (237)
                      .+.
T Consensus        91 ~~~   93 (123)
T d1nhpa2          91 TGE   93 (123)
T ss_dssp             ESC
T ss_pred             eCc
Confidence            554

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.10  E-value=0.87  Score=35.56  Aligned_cols=81  Identities=5%  Similarity=-0.170  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGS  147 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~  147 (237)
                      .++++||-.| |+|+.+.++++.+ ..+.+|+++..+.......++............++.+|..+...-.    .....
T Consensus         9 ~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~----~~~~~   83 (342)
T d1y1pa1           9 PEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYD----EVIKG   83 (342)
T ss_dssp             CTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTT----TTTTT
T ss_pred             CCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhh----hhccc
Confidence            4578999999 5699998887755 2356899988887777666665555444444566778876532110    01255


Q ss_pred             eeEEEEe
Q 026547          148 FDYAFVD  154 (237)
Q Consensus       148 ~D~i~id  154 (237)
                      .|.|+..
T Consensus        84 ~~~v~~~   90 (342)
T d1y1pa1          84 AAGVAHI   90 (342)
T ss_dssp             CSEEEEC
T ss_pred             chhhhhh
Confidence            6777654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.08  E-value=4.5  Score=29.75  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|++.|- +..+++.+ ..+.+|+.++.+.+.++..   .++.+  .++.++++|..+      ++....++
T Consensus         3 l~gK~alItGas~GI-G~aia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           3 LSGKTILVTGAASGI-GRAALDLFAREGASLVAVDREERLLAEA---VAALE--AEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHH---HHTCC--SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            467899999977654 44444444 2368999999998766443   33444  468888888654      22222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++.++
T Consensus        77 ---~g~iDiLinnA   87 (241)
T d2a4ka1          77 ---FGRLHGVAHFA   87 (241)
T ss_dssp             ---HSCCCEEEEGG
T ss_pred             ---hCCccEecccc
Confidence               37899988753

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.04  E-value=3  Score=27.02  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=53.7

Q ss_pred             CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCC
Q 026547           96 GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKV  173 (237)
Q Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~  173 (237)
                      .+|..||-++...+..+..++..|+.  |. ...++.+.+..+..     .+||+|++|...+.  -.++++.+...-..
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~~-----~~~dlillD~~mp~~~G~~~~~~~r~~~~~   74 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGYD--VI-TASDGEEALKKAET-----EKPDLIVLDVMLPKLDGIEVCKQLRQQKLM   74 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHHH-----HCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHhc-----ccccEEEecccccCCCCchhhhhhhccCCC
Confidence            48999999999999999999998862  33 45566666665532     58999999976544  34566666544333


Q ss_pred             CeEEEEeC
Q 026547          174 GGIAVYDN  181 (237)
Q Consensus       174 gG~lv~~~  181 (237)
                      -.++++..
T Consensus        75 ~~ii~lt~   82 (121)
T d1mvoa_          75 FPILMLTA   82 (121)
T ss_dssp             CCEEEEEC
T ss_pred             CEEEEEEe
Confidence            34555543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.02  E-value=2.8  Score=31.18  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.+|.+++..+.+++    .+    ..++++|..+      .+....++
T Consensus         3 l~GK~alITGas~GI-G~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           3 FAGKGVLVTGGARGI-GRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            578899999976654 44444433 236899999999887654433    22    3566777654      23333222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++.++
T Consensus        74 ---~G~iDiLVnnA   84 (248)
T d2d1ya1          74 ---LGRVDVLVNNA   84 (248)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCeEEEeC
Confidence               37899988654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.86  E-value=1.6  Score=32.51  Aligned_cols=76  Identities=12%  Similarity=0.059  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH--HHHHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS--VLDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~  146 (237)
                      +++++|-.|.+.|. +..+++.+ ..+.+|+.++.+++.++...+.+   +   .+..++.|..+  .+....++   .+
T Consensus         4 ~GK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~~~~~v~~~~~~---~g   73 (242)
T d1cyda_           4 SGLRALVTGAGKGI-GRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---P---GIEPVCVDLGDWDATEKALGG---IG   73 (242)
T ss_dssp             TTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHTT---CC
T ss_pred             CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHHH---cC
Confidence            57899999977664 34333333 23689999999987665544432   2   36777877654  33344333   47


Q ss_pred             ceeEEEEeC
Q 026547          147 SFDYAFVDA  155 (237)
Q Consensus       147 ~~D~i~id~  155 (237)
                      ++|+++..+
T Consensus        74 ~iDilVnnA   82 (242)
T d1cyda_          74 PVDLLVNNA   82 (242)
T ss_dssp             CCSEEEECC
T ss_pred             CCeEEEECC
Confidence            899988664

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=85.66  E-value=1.1  Score=33.72  Aligned_cols=81  Identities=11%  Similarity=0.151  Sum_probs=54.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~~~  142 (237)
                      ++++||-.|+..|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+.  .+.++.+|..+.      .....+. 
T Consensus         5 ~gK~alITGas~GI-G~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~-   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGI-GYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV-   80 (258)
T ss_dssp             TTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH-
Confidence            68899999986553 34444332 2378999999999999888888887764  577888886542      2222222 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                       ..+..|+++..+
T Consensus        81 -~~g~idilinna   92 (258)
T d1ae1a_          81 -FDGKLNILVNNA   92 (258)
T ss_dssp             -TTSCCCEEEECC
T ss_pred             -hCCCcEEEeccc
Confidence             125688887543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.42  E-value=1.3  Score=33.11  Aligned_cols=77  Identities=12%  Similarity=0.079  Sum_probs=49.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|++.|. +..+++.+ ..+.+|+.+|.+++.++...+.+      +++.++.+|..+      ......++
T Consensus         4 l~GK~alITGas~GI-G~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           4 YAGKVVVVTGGGRGI-GAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence            468899999977664 34444333 23689999999988776555432      247788888644      22222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++..+
T Consensus        77 ---~g~iDilVnnA   87 (250)
T d1ydea1          77 ---FGRLDCVVNNA   87 (250)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCEEEecc
Confidence               37899998764

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.15  E-value=3.5  Score=26.87  Aligned_cols=76  Identities=12%  Similarity=0.029  Sum_probs=53.9

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLK  172 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~  172 (237)
                      .++|..||-++...+..+..++..|+  ++. ...+..+.+..+.     ..+||+|++|...+.  -.++++.+.+. .
T Consensus         3 k~~ILIVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~a~~~l~-----~~~~dlii~D~~mp~~~G~el~~~l~~~-~   73 (123)
T d1krwa_           3 RGIVWVVDDDSSIRWVLERALAGAGL--TCT-TFENGNEVLAALA-----SKTPDVLLSDIRMPGMDGLALLKQIKQR-H   73 (123)
T ss_dssp             CCEEEEESSSHHHHHHHHHHHHHTTC--EEE-EESSSHHHHHHHT-----TCCCSEEEECCSSSSSTTHHHHHHHHHH-S
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCCHHHHHHHHH-----hCCCCEEEehhhcCCchHHHHHHHHHHh-C
Confidence            46899999999999999999999886  243 4566767766653     368999999965443  35677777543 4


Q ss_pred             CCeEEEE
Q 026547          173 VGGIAVY  179 (237)
Q Consensus       173 ~gG~lv~  179 (237)
                      |.--+++
T Consensus        74 ~~~piI~   80 (123)
T d1krwa_          74 PMLPVII   80 (123)
T ss_dssp             SSCCEEE
T ss_pred             CCCeEEE
Confidence            4444443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=84.88  E-value=2.2  Score=28.93  Aligned_cols=38  Identities=18%  Similarity=0.003  Sum_probs=28.2

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHH
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYE  109 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~  109 (237)
                      -++|.=|| |.|..+..|++.+.+ +-.|++.|.++....
T Consensus         9 ~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2           9 IHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAVA   47 (152)
T ss_dssp             CCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred             CCeEEEEc-CCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence            35889999 568888888877643 468999999876543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=84.70  E-value=1.9  Score=32.30  Aligned_cols=80  Identities=16%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHH-HhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVI-KKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      +++.+|-.|.+.| .+..+++.+. .+.+|+.++.+++.++.+.+.+ ++.|  .++.++++|..+      ......++
T Consensus         8 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRG-IGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSH-HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            5788999996655 4444444432 3679999999987776555444 4445  358888888654      22233332


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++..+
T Consensus        85 ---~g~iDilVnnA   95 (260)
T d1h5qa_          85 ---LGPISGLIANA   95 (260)
T ss_dssp             ---SCSEEEEEECC
T ss_pred             ---hCCCcEecccc
Confidence               47899987654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.49  E-value=2.2  Score=32.44  Aligned_cols=81  Identities=16%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHH-hcCCCCcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIK-KAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      .+++.+|-.|+..| .+..+++.+ ..+.+|+.+|.+.+.++.+.+.+. ..+  .++.++.+|..+.      .....+
T Consensus        23 l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          23 FQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhhh
Confidence            46789999997665 444444433 236799999999988776665554 334  3577888876542      222222


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      .   .+.+|+++..+
T Consensus       100 ~---~g~iDilvnnA  111 (294)
T d1w6ua_         100 V---AGHPNIVINNA  111 (294)
T ss_dssp             H---TCSCSEEEECC
T ss_pred             h---ccccchhhhhh
Confidence            2   47899887654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.46  E-value=1.3  Score=29.11  Aligned_cols=49  Identities=18%  Similarity=0.192  Sum_probs=36.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------hHHHHHHHHHHhcCC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR--------ETYEIGLPVIKKAGV  120 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~--------~~~~~a~~~~~~~~~  120 (237)
                      .|++++-||.  |+.++.+|..+. .+.+|+-++..+        ++.+.+++.+++.|+
T Consensus        22 ~p~~~vIiG~--G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          22 IPKRLTIIGG--GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             CCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECC--CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            4789999998  566666554442 267999999644        777888999988874

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.38  E-value=0.66  Score=33.31  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=28.9

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCchHHHHHH
Q 026547           73 KTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNRETYEIGL  112 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~  112 (237)
                      +|.-||.  |+.++.+|..+..+.+|+++|++++.++..+
T Consensus         2 kI~ViGl--G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECC--ChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            4666765  7877777666666789999999999887665

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=2.7  Score=27.36  Aligned_cols=77  Identities=9%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             CEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCC
Q 026547           96 GQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKV  173 (237)
Q Consensus        96 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~  173 (237)
                      .+|..||-++...+..+..++..|+  .+. ...+..+.+..+.     ..+||+|++|.....  -.++++.+.+. ..
T Consensus         3 p~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~-----~~~~dlii~D~~mp~~~G~~~~~~~r~~-~~   73 (121)
T d1xhfa1           3 PHILIVEDELVTRNTLKSIFEAEGY--DVF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELREQ-AN   73 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHH-CC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECChHHHHHHHH-----hcCCCEEEeecccCCccCcHHHHHHHhc-CC
Confidence            4899999999999999999999886  233 4456666666654     268999999965443  23555555432 22


Q ss_pred             CeEEEEeC
Q 026547          174 GGIAVYDN  181 (237)
Q Consensus       174 gG~lv~~~  181 (237)
                      =.+|++..
T Consensus        74 ~pii~lt~   81 (121)
T d1xhfa1          74 VALMFLTG   81 (121)
T ss_dssp             CEEEEEES
T ss_pred             CcEEEEEC
Confidence            23555543

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=84.01  E-value=4.3  Score=27.06  Aligned_cols=76  Identities=13%  Similarity=0.123  Sum_probs=53.9

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCC
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVG  174 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~g  174 (237)
                      +|..||-++...+..+..++..|+  .+. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+.+. .|+
T Consensus         2 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~~~~~~~al~~l~-----~~~~dlil~D~~mP~~~G~el~~~lr~~-~~~   72 (140)
T d1qkka_           2 SVFLIDDDRDLRKAMQQTLELAGF--TVS-SFASATEALAGLS-----ADFAGIVISDIRMPGMDGLALFRKILAL-DPD   72 (140)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHTCC-----TTCCSEEEEESCCSSSCHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EeCChHHHHHHHh-----ccCcchHHHhhccCCCCHHHHHHHHHHh-CCC
Confidence            789999999999999999998886  243 3466767666552     478999999976544  35677777654 444


Q ss_pred             e-EEEEeC
Q 026547          175 G-IAVYDN  181 (237)
Q Consensus       175 G-~lv~~~  181 (237)
                      - +|++..
T Consensus        73 ~pvI~lT~   80 (140)
T d1qkka_          73 LPMILVTG   80 (140)
T ss_dssp             SCEEEEEC
T ss_pred             CcEEEEEC
Confidence            3 555543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.92  E-value=1.7  Score=28.13  Aligned_cols=50  Identities=20%  Similarity=0.167  Sum_probs=35.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------hHHHHHHHHHHhcCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR--------ETYEIGLPVIKKAGV  120 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~--------~~~~~a~~~~~~~~~  120 (237)
                      ..|++++-||.  |+.++.+|..+. .+.+|+.++..+        ++.+...+.+++.|+
T Consensus        20 ~~p~~v~IiGg--G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2          20 EVPKSLVVIGG--GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             hcCCeEEEECC--CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCC
Confidence            45789999998  666666655442 267999999655        456777788887774

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.59  E-value=1.6  Score=32.47  Aligned_cols=78  Identities=12%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|++.|. +..+++.+ ..+.+|+.+|.+++.++...+.+   +  +++.++++|..+      .+....++
T Consensus         4 L~gK~alITGas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           4 LTGKVALVSGGARGM-GASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---A--DAARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---G--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---h--CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            467899999987664 34333333 23679999999998776655543   2  467888888644      22233222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+.+|+++..+
T Consensus        78 ---~g~idilinnA   88 (244)
T d1nffa_          78 ---FGGLHVLVNNA   88 (244)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---hCCCeEEEECC
Confidence               36899988664

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.38  E-value=1.6  Score=28.48  Aligned_cols=50  Identities=14%  Similarity=0.143  Sum_probs=37.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC--------CchHHHHHHHHHHhcCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDV--------NRETYEIGLPVIKKAGV  120 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~--------~~~~~~~a~~~~~~~~~  120 (237)
                      ..|++++-||.  |+.++.+|..+. -+.+|+.++.        +++..+..++.+++.|+
T Consensus        20 ~~p~~i~IiG~--G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv   78 (119)
T d3lada2          20 NVPGKLGVIGA--GVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGL   78 (119)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTE
T ss_pred             cCCCeEEEECC--ChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCc
Confidence            35789999988  788887776553 2578999985        45667788888888773

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=83.18  E-value=3.6  Score=27.01  Aligned_cols=68  Identities=6%  Similarity=0.069  Sum_probs=49.0

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHc
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMK  169 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~  169 (237)
                      .-+|..||-++......++.++..|+.. +. ...|..+.+..+.     ..+||+|++|...+.  -.++++.+++
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~~-v~-~a~~~~~al~~l~-----~~~~dlii~D~~mP~~~G~el~~~lr~   75 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFKQ-IT-AAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCSC-EE-CCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCeE-EE-EECCHHHHHHHHH-----hCCCCeEEeeeecCCCChHHHHHHHHh
Confidence            4589999999999999999999888632 22 3456666665553     368999999976544  3466777754

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=82.89  E-value=5.2  Score=27.09  Aligned_cols=74  Identities=15%  Similarity=0.167  Sum_probs=40.1

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHh-cCCCCcEEEEeccchHHHHHHhhcCCCCC
Q 026547           70 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE-IGLPVIKK-AGVDHKINFIESEALSVLDQLLKDSENEG  146 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  146 (237)
                      +..+|.-||+|. |....+.+...+-..+++.+|++++..+ .+.. +.. ........+..+|..+.           .
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D-l~~a~~~~~~~~~~~~d~~~~-----------~   71 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD-LEDAQAFTAPKKIYSGEYSDC-----------K   71 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHGGGGGSCCCEEEECCGGGG-----------T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH-HhccccccCCceEeeccHHHh-----------c
Confidence            456888899855 4333332222122358999999987653 2222 222 11122345556665433           4


Q ss_pred             ceeEEEEeC
Q 026547          147 SFDYAFVDA  155 (237)
Q Consensus       147 ~~D~i~id~  155 (237)
                      .-|+|++-.
T Consensus        72 ~adivvita   80 (146)
T d1ez4a1          72 DADLVVITA   80 (146)
T ss_dssp             TCSEEEECC
T ss_pred             cccEEEEec
Confidence            568888764

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.81  E-value=4.7  Score=26.59  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLK  172 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~  172 (237)
                      +.+|..||-++...+..++.++..|+.  +. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+.+.-+
T Consensus         8 ~~~ILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~g~ea~~~~~-----~~~~dlillD~~mP~~dG~el~~~ir~~~~   79 (133)
T d2ayxa1           8 DMMILVVDDHPINRRLLADQLGSLGYQ--CK-TANDGVDALNVLS-----KNHIDIVLSDVNMPNMDGYRLTQRIRQLGL   79 (133)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHHTSE--EE-EECCSHHHHHHHH-----HSCCSEEEEEESSCSSCCHHHHHHHHHHHC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCE--EE-EECcHHHHHHHHh-----ccCceEEEEeccCCCCCHHHHHHHHHHhCC
Confidence            568999999999999999999999862  33 4556666665553     268999999965433  3466666654322


Q ss_pred             CCeEEEEe
Q 026547          173 VGGIAVYD  180 (237)
Q Consensus       173 ~gG~lv~~  180 (237)
                      .--++++.
T Consensus        80 ~~pii~lt   87 (133)
T d2ayxa1          80 TLPVIGVT   87 (133)
T ss_dssp             CSCEEEEE
T ss_pred             CCCEEEEe
Confidence            22244443

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.79  E-value=5  Score=26.88  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=40.4

Q ss_pred             EEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCchHHH-HHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           73 KTIEIGVFT-GYSLLLTALTIPEDGQIMAIDVNRETYE-IGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        73 ~vLeiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~-~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +|--||+|. |....+.+...+-..++..+|++++.++ .+...........+.....+|..+.           ..-|+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~-----------~~adi   70 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADL-----------KGSDV   70 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGG-----------TTCSE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHh-----------cCCCE
Confidence            566788765 4433332222222458999999987664 3333333233334456666654433           45688


Q ss_pred             EEEeCC
Q 026547          151 AFVDAD  156 (237)
Q Consensus       151 i~id~~  156 (237)
                      |++-+.
T Consensus        71 vvitag   76 (140)
T d1a5za1          71 VIVAAG   76 (140)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            888653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.72  E-value=2.4  Score=31.85  Aligned_cols=81  Identities=19%  Similarity=0.216  Sum_probs=52.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc-hHHHHHHHHHHhcCCCCcEEEEeccchHH------HHHHhh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNR-ETYEIGLPVIKKAGVDHKINFIESEALSV------LDQLLK  140 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~  140 (237)
                      .+++.+|-.|.+.|- +..+++.+. .+.+|+.++.+. +.++.+.+.++..+.  ++.++++|..+.      .....+
T Consensus         5 L~gK~alITGas~GI-G~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           5 LEGKVVVITGSSTGL-GKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             GTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHH
Confidence            467889988877664 444443332 367999999875 466777777776663  678888887542      222222


Q ss_pred             cCCCCCceeEEEEeC
Q 026547          141 DSENEGSFDYAFVDA  155 (237)
Q Consensus       141 ~~~~~~~~D~i~id~  155 (237)
                      +   .+++|+++.++
T Consensus        82 ~---~G~iDiLVnnA   93 (261)
T d1geea_          82 E---FGKLDVMINNA   93 (261)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---hCCCCEeeccc
Confidence            2   36899988664

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.67  E-value=2  Score=32.06  Aligned_cols=78  Identities=22%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~  142 (237)
                      +++++|-.|.+.|. +..+++.+. .+.+|+.+|.+++.++.+.+.+   +  .++.++.+|..+      ......++ 
T Consensus         4 ~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~-   76 (256)
T d1k2wa_           4 DGKTALITGSARGI-GRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDR-   76 (256)
T ss_dssp             TTEEEEEETCSSHH-HHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHH-
Confidence            57889999976654 444443332 3679999999987766555443   4  457888888644      22222222 


Q ss_pred             CCCCceeEEEEeCC
Q 026547          143 ENEGSFDYAFVDAD  156 (237)
Q Consensus       143 ~~~~~~D~i~id~~  156 (237)
                        .+.+|+++.++.
T Consensus        77 --~g~iDilVnnAg   88 (256)
T d1k2wa_          77 --WGSIDILVNNAA   88 (256)
T ss_dssp             --HSCCCEEEECCC
T ss_pred             --hCCccEEEeecc
Confidence              378999887643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.37  E-value=2.4  Score=34.44  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=53.3

Q ss_pred             CCCEEEEEcccc-cHHHH-HHHhhCCCCCEEEEEeCCc-------------------hHHHHHHHHHHhcCCCCcEEEEe
Q 026547           70 NAKKTIEIGVFT-GYSLL-LTALTIPEDGQIMAIDVNR-------------------ETYEIGLPVIKKAGVDHKINFIE  128 (237)
Q Consensus        70 ~~~~vLeiG~G~-G~~~~-~la~~~~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~v~~~~  128 (237)
                      +..+||-+|||. |...+ .|+. .+ -++++.+|.+.                   ...+.|++.+...+..-++..+.
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~-~G-vg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLAL-SG-FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHT-TT-CCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             hcCeEEEECCCHHHHHHHHHHHH-cC-CCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            346799999974 33222 2332 22 45899999633                   23566777777766555677777


Q ss_pred             ccchHHHHHHhhcCCCCCceeEEEEeCCCcCcHHHHHH
Q 026547          129 SEALSVLDQLLKDSENEGSFDYAFVDADKVNYWNYHER  166 (237)
Q Consensus       129 ~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~~~~~~~~  166 (237)
                      .+..+....+      ...||+|+...+......++..
T Consensus       114 ~~i~~~~~~~------~~~~DlVi~~~Dn~~aR~~in~  145 (426)
T d1yovb1         114 NKIQDFNDTF------YRQFHIIVCGLDSIIARRWING  145 (426)
T ss_dssp             SCGGGBCHHH------HTTCSEEEECCSCHHHHHHHHH
T ss_pred             ccccchHHHH------HHhcchheeccCcHHHHHHHHH
Confidence            7766544444      3789999865543333334333

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=82.26  E-value=4.8  Score=26.27  Aligned_cols=76  Identities=13%  Similarity=0.090  Sum_probs=53.1

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCC
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVG  174 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~g  174 (237)
                      +|..||-++...+..+..++..|+  .+. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+.+.-..-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~   75 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGF--EVE-TFDCASTFLEHRR-----PEQHGCLVLDMRMPGMSGIELQEQLTAISDGI   75 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTC--EEE-EESSHHHHHHHCC-----TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC--Ccc-ccccHHHHHHHHH-----hcCCCEeehhhhcccchhHHHHHHHHhhCCCC
Confidence            899999999999999999998886  233 3456666666542     478999999975433  356677776543333


Q ss_pred             eEEEEe
Q 026547          175 GIAVYD  180 (237)
Q Consensus       175 G~lv~~  180 (237)
                      -++++.
T Consensus        76 ~ii~lt   81 (128)
T d1yioa2          76 PIVFIT   81 (128)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            455553

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=82.08  E-value=1.4  Score=30.61  Aligned_cols=80  Identities=15%  Similarity=0.054  Sum_probs=45.1

Q ss_pred             EEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeE
Q 026547           73 KTIEIGVFT-GYS-LLLTALTIPEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDY  150 (237)
Q Consensus        73 ~vLeiG~G~-G~~-~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~  150 (237)
                      +|.-||||. |.. -+......+ +..++.+|.+++..+...+.+   +...    ...|..+.+.         ..+|+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~---~~~~----~~~~~~~ll~---------~~iD~   65 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRY---RVSA----TCTDYRDVLQ---------YGVDA   65 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHT---TCCC----CCSSTTGGGG---------GCCSE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhc---cccc----ccccHHHhcc---------cccce
Confidence            677899964 211 122333344 567888998887766554433   4321    2345555432         45899


Q ss_pred             EEEeCCCcCcHHHHHHHHc
Q 026547          151 AFVDADKVNYWNYHERLMK  169 (237)
Q Consensus       151 i~id~~~~~~~~~~~~~~~  169 (237)
                      |++..+.....++...+.+
T Consensus        66 V~I~tp~~~H~~~~~~al~   84 (167)
T d1xeaa1          66 VMIHAATDVHSTLAAFFLH   84 (167)
T ss_dssp             EEECSCGGGHHHHHHHHHH
T ss_pred             ecccccccccccccccccc
Confidence            9887765555555444443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.06  E-value=6.7  Score=27.81  Aligned_cols=38  Identities=16%  Similarity=0.290  Sum_probs=24.1

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHH
Q 026547           73 KTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGL  112 (237)
Q Consensus        73 ~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~  112 (237)
                      +|--||+  |+.++.+|..+. .+-+|+++|.+++.++..+
T Consensus         2 kI~ViGl--G~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGL--GYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECC--CHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            4666776  454444433332 2569999999998776544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.85  E-value=1.7  Score=32.23  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=47.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhcC
Q 026547           70 NAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKDS  142 (237)
Q Consensus        70 ~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~~  142 (237)
                      +++.+|-.|.+.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+       +++++.+|..+      .+....++ 
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~-   74 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAH-   74 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHh-
Confidence            5788999998766 444444433 23679999999988776655432       35677777643      22222222 


Q ss_pred             CCCCceeEEEEeC
Q 026547          143 ENEGSFDYAFVDA  155 (237)
Q Consensus       143 ~~~~~~D~i~id~  155 (237)
                        .+++|+++.++
T Consensus        75 --~g~iDilVnnA   85 (242)
T d1ulsa_          75 --LGRLDGVVHYA   85 (242)
T ss_dssp             --HSSCCEEEECC
T ss_pred             --cCCceEEEECC
Confidence              36899887654

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.76  E-value=5.3  Score=26.45  Aligned_cols=75  Identities=11%  Similarity=0.118  Sum_probs=51.8

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCC
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVG  174 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~g  174 (237)
                      +|..||-++...+..+..++..|+  .+. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+... .|+
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~eAl~~l~-----~~~~dlvilD~~mp~~~G~e~~~~lr~~-~~~   72 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGI--KVE-SAERGKEAYKLLS-----EKHFNVVLLDLLLPDVNGLEILKWIKER-SPE   72 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHhh-----ccccccchHHHhhhhhhHHHHHHHHHHh-CCC
Confidence            688899999999999999999886  243 3556666666553     268999999965433  35667777543 344


Q ss_pred             e-EEEEe
Q 026547          175 G-IAVYD  180 (237)
Q Consensus       175 G-~lv~~  180 (237)
                      - +|++.
T Consensus        73 ~piI~lT   79 (137)
T d1ny5a1          73 TEVIVIT   79 (137)
T ss_dssp             SEEEEEE
T ss_pred             CCEEEEE
Confidence            3 45543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.73  E-value=0.55  Score=36.15  Aligned_cols=59  Identities=12%  Similarity=0.215  Sum_probs=41.7

Q ss_pred             CEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH
Q 026547           72 KKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS  133 (237)
Q Consensus        72 ~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (237)
                      ++||-.| |+|+.+.++++.+ ..+.+|+++|.......  ..+++..+..++++++.+|..+
T Consensus         1 k~vLItG-~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d   60 (321)
T d1rpna_           1 RSALVTG-ITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELGIEGDIQYEDGDMAD   60 (321)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTTCGGGEEEEECCTTC
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhcccCCcEEEEccccC
Confidence            5788888 6799988887766 33679999997653211  2344555556689999999765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.58  E-value=2.2  Score=31.89  Aligned_cols=79  Identities=16%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.| .+..+++.+ ..+.+|+.+|.+++.++...+.+   +  .+..++++|..+      ......++
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            46788999897655 444444433 23679999999998877665544   3  356777777643      22222222


Q ss_pred             CCCCCceeEEEEeCC
Q 026547          142 SENEGSFDYAFVDAD  156 (237)
Q Consensus       142 ~~~~~~~D~i~id~~  156 (237)
                         .+++|+++.++.
T Consensus        78 ---~g~iDilVnnAG   89 (253)
T d1hxha_          78 ---LGTLNVLVNNAG   89 (253)
T ss_dssp             ---HCSCCEEEECCC
T ss_pred             ---hCCCCeEEeccc
Confidence               378999987643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=81.52  E-value=1.8  Score=32.50  Aligned_cols=78  Identities=18%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.|- +..+++.+. .+.+|+.+|.+++.++...+   +.+  .++.++++|..+      ......++
T Consensus         3 L~gK~alVTGas~GI-G~aia~~la~~Ga~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           3 LSGKTVIITGGARGL-GAEAARQAVAAGARVVLADVLDEEGAATAR---ELG--DAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCCSEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TTG--GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhC--CceEEEEcccCCHHHHHHHHHHHHHH
Confidence            367899999987764 333333331 36799999999876654433   333  468888888653      22222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++.++
T Consensus        77 ---~g~iDilVnnA   87 (254)
T d1hdca_          77 ---FGSVDGLVNNA   87 (254)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCccEEEecC
Confidence               37899887654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=81.36  E-value=5.1  Score=27.87  Aligned_cols=93  Identities=14%  Similarity=0.036  Sum_probs=48.9

Q ss_pred             CEEEEEcccccHHH--HHHHhhCCCCCEEEEE-eCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCce
Q 026547           72 KKTIEIGVFTGYSL--LLTALTIPEDGQIMAI-DVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSF  148 (237)
Q Consensus        72 ~~vLeiG~G~G~~~--~~la~~~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  148 (237)
                      -+|.-||||.=...  +...+..+...+++++ |.+++..+...+.   .+.   . ....|..+.+.        ...+
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~---~~~---~-~~~~~~~ell~--------~~~i   68 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM---VGN---P-AVFDSYEELLE--------SGLV   68 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH---HSS---C-EEESCHHHHHH--------SSCC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcc---ccc---c-ceeeeeecccc--------cccc
Confidence            47888998652221  2233344434577754 7777665544433   342   1 23355555544        3679


Q ss_pred             eEEEEeCCCcCcHHHHHHHHccCCCCeEEEEeCc
Q 026547          149 DYAFVDADKVNYWNYHERLMKLLKVGGIAVYDNT  182 (237)
Q Consensus       149 D~i~id~~~~~~~~~~~~~~~~L~~gG~lv~~~~  182 (237)
                      |+|++..+.....++...   .|+.|=-++++-.
T Consensus        69 d~v~I~tp~~~h~~~~~~---al~~gk~V~~EKP   99 (181)
T d1zh8a1          69 DAVDLTLPVELNLPFIEK---ALRKGVHVICEKP   99 (181)
T ss_dssp             SEEEECCCGGGHHHHHHH---HHHTTCEEEEESS
T ss_pred             ceeecccccccccccccc---ccccchhhhcCCC
Confidence            999987655443344333   3334434555443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.30  E-value=6.4  Score=27.12  Aligned_cols=125  Identities=13%  Similarity=0.032  Sum_probs=66.2

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEE
Q 026547           74 TIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAF  152 (237)
Q Consensus        74 vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~  152 (237)
                      |=-||+  |..+..|++++- .+.+|++.|.+++..+...+........+.... ..+..++....       ...+.++
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~   73 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-------KKPRKAL   73 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-------CSSCEEE
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-------ccceEEE
Confidence            344555  666666665552 256899999999877666554332222222222 22333333332       3334443


Q ss_pred             EeC-CCcCcHHHHHHHHccCCCCeEEEEeCcCCCCcccCCCCCCCccccchHHHHHHHHHHhhcCCCceEEeeecC
Q 026547          153 VDA-DKVNYWNYHERLMKLLKVGGIAVYDNTLWGGTVAMSEEQVPDHLRGGRQATLDLNRSLADDPRIQLSHVPLG  227 (237)
Q Consensus       153 id~-~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~  227 (237)
                      +.. ........+..+...+++|.+++-.....                  ....+++.+.+. ...+.+.--|+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~------------------~~~~~~~~~~l~-~~~~~~ldapv~  130 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH------------------FKDQGRRAQQLE-AAGLRFLGMGIS  130 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC------------------HHHHHHHHHHHH-TTTCEEEEEEEE
T ss_pred             EeecCcchhhhhhhhhhhhccccceecccCccc------------------hhHHHHHHHHHh-hcceeEeccccc
Confidence            332 23334456677778899988776543321                  233555555554 334555555654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.18  E-value=1.7  Score=32.62  Aligned_cols=82  Identities=16%  Similarity=0.194  Sum_probs=51.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCC-chHHHHHHHHHHh-cCCCCcEEEEeccchH------HHHHHh
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQIMAIDVN-RETYEIGLPVIKK-AGVDHKINFIESEALS------VLDQLL  139 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~-~~~~~v~~vD~~-~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~------~~~~~~  139 (237)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.++.+ ++.++.+.+.+.. .+  .++.++.+|..+      .+....
T Consensus         2 L~gK~alITGas~GI-G~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~   78 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGI-GLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAV   78 (260)
T ss_dssp             CTTCEEEETTCSSHH-HHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHH
Confidence            467888988877664 34333333 136799999986 4566666665543 34  358888888754      222222


Q ss_pred             hcCCCCCceeEEEEeCC
Q 026547          140 KDSENEGSFDYAFVDAD  156 (237)
Q Consensus       140 ~~~~~~~~~D~i~id~~  156 (237)
                      +.   .+++|+++.++.
T Consensus        79 ~~---~G~iDiLVnnAG   92 (260)
T d1x1ta1          79 RQ---MGRIDILVNNAG   92 (260)
T ss_dssp             HH---HSCCSEEEECCC
T ss_pred             HH---hCCCcEEEeecc
Confidence            22   378999987643

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=81.13  E-value=2.7  Score=27.30  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=52.9

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHc--cCC
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMK--LLK  172 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~--~L~  172 (237)
                      +|.-||-++...+..+..++..|+.  +. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+.+  ..+
T Consensus         2 kILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlil~D~~mp~~~G~~l~~~lr~~~~~~   73 (121)
T d1zesa1           2 RILVVEDEAPIREMVCFVLEQNGFQ--PV-EAEDYDSAVNQLN-----EPWPDLILLDWMLPGGSGIQFIKHLKRESMTR   73 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EECSHHHHHHHSS-----SSCCSEEEECSSCTTSCHHHHHHHHHHSTTTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECChHHHHHHHH-----ccCCCEEEeecCCCCCCHHHHHHHHHhCccCC
Confidence            6889999999999999999998862  33 4556777766552     478999999975444  3566777753  222


Q ss_pred             CCeEEEEeC
Q 026547          173 VGGIAVYDN  181 (237)
Q Consensus       173 ~gG~lv~~~  181 (237)
                      .--+|++..
T Consensus        74 ~~pvi~lt~   82 (121)
T d1zesa1          74 DIPVVMLTA   82 (121)
T ss_dssp             TSCEEEEES
T ss_pred             CCeEEEEEC
Confidence            223555543

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.10  E-value=5.2  Score=25.90  Aligned_cols=76  Identities=11%  Similarity=0.078  Sum_probs=53.1

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCC
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVG  174 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~g  174 (237)
                      +|..||-++...+..+..++..|+  .+. ...+..+.+..+.     ...||+|++|...+.  -.++++.+.+.-+.=
T Consensus         3 kILiVDD~~~~~~~l~~~L~~~g~--~v~-~a~~~~eal~~~~-----~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~   74 (121)
T d1ys7a2           3 RVLVVDDDSDVLASLERGLRLSGF--EVA-TAVDGAEALRSAT-----ENRPDAIVLDINMPVLDGVSVVTALRAMDNDV   74 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTC--EEE-EESSHHHHHHHHH-----HSCCSEEEEESSCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHH-----hCCCCEEEEEeeccCcccHHHHHHHHhcCCCC
Confidence            899999999999999999999886  233 4556767666654     268999999975444  356777776543322


Q ss_pred             eEEEEe
Q 026547          175 GIAVYD  180 (237)
Q Consensus       175 G~lv~~  180 (237)
                      -+|++.
T Consensus        75 piI~lt   80 (121)
T d1ys7a2          75 PVCVLS   80 (121)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            345544

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=81.07  E-value=5.2  Score=25.94  Aligned_cols=76  Identities=12%  Similarity=0.034  Sum_probs=53.7

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCC
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLK  172 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~  172 (237)
                      +.+|.-||-++...+..+..++..|+  .+. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+.+ ..
T Consensus         3 ~~~ILiVDDd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~~~-----~~~~dlvi~D~~mp~~~G~e~~~~lr~-~~   73 (123)
T d1dbwa_           3 DYTVHIVDDEEPVRKSLAFMLTMNGF--AVK-MHQSAEAFLAFAP-----DVRNGVLVTDLRMPDMSGVELLRNLGD-LK   73 (123)
T ss_dssp             CCEEEEEESSHHHHHHHHHHHHHTTC--EEE-EESCHHHHHHHGG-----GCCSEEEEEECCSTTSCHHHHHHHHHH-TT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC--EEE-EECCHHHHHHHHh-----hcCCcEEEEeccCccccchHHHHHHHh-cC
Confidence            56899999999999999999999886  343 3456666665543     368999999975444  3567777764 34


Q ss_pred             CCeEEEE
Q 026547          173 VGGIAVY  179 (237)
Q Consensus       173 ~gG~lv~  179 (237)
                      |...+++
T Consensus        74 ~~~~iI~   80 (123)
T d1dbwa_          74 INIPSIV   80 (123)
T ss_dssp             CCCCEEE
T ss_pred             CCCeEEE
Confidence            5444433

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=80.75  E-value=4.6  Score=26.10  Aligned_cols=72  Identities=10%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCC
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVG  174 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~g  174 (237)
                      +|..||-++...+..+..++..|   .+. ...++.+.+..       ..+||+|++|...+.  -.++++.+.+. .+.
T Consensus         4 kILiVDDd~~~~~~l~~~L~~~g---~v~-~~~~~~~al~~-------~~~~dlillD~~mP~~~G~~~~~~lr~~-~~~   71 (120)
T d1p2fa2           4 KIAVVDDDKNILKKVSEKLQQLG---RVK-TFLTGEDFLND-------EEAFHVVVLDVMLPDYSGYEICRMIKET-RPE   71 (120)
T ss_dssp             EEEEECSCHHHHHHHHHHHTTTE---EEE-EESSHHHHHHC-------CSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEECCHHHHHHHHHHHHhCC---EEE-EECCHHHHHhc-------CCCCCEEEEeCcccccchhHHHHHHhhc-CCC
Confidence            78999999999999999997766   233 34456665542       368999999975444  34566666533 344


Q ss_pred             e-EEEEe
Q 026547          175 G-IAVYD  180 (237)
Q Consensus       175 G-~lv~~  180 (237)
                      - ++++.
T Consensus        72 ~~ii~it   78 (120)
T d1p2fa2          72 TWVILLT   78 (120)
T ss_dssp             SEEEEEE
T ss_pred             CcEEEEe
Confidence            4 55554

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=80.75  E-value=8.9  Score=30.58  Aligned_cols=126  Identities=12%  Similarity=0.098  Sum_probs=78.8

Q ss_pred             ccHHHHHHHHHHHhhcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-hHHHHHHHHHHhcCCCCcEEEEeccch
Q 026547           54 TAPDAGQLMAMLLKLVNAKKTIEIGVFTGYSLLLTALTIPEDGQIMAIDVNR-ETYEIGLPVIKKAGVDHKINFIESEAL  132 (237)
Q Consensus        54 ~~~~~~~~l~~l~~~~~~~~vLeiG~G~G~~~~~la~~~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~  132 (237)
                      -.|....+-..++.+..+...+-..+|.+-.+..+...++++.+|++.+.-- ......+..+.+.|+  .++++..+-.
T Consensus        61 ~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi--~~~~vd~~d~  138 (397)
T d1y4ia1          61 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI--NVRFVDAGKP  138 (397)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC--EEEEECTTSH
T ss_pred             CCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCce--EeeccCCCCH
Confidence            4677777778888888888888888888877776666666678888877433 444566677777786  3666654433


Q ss_pred             HHHHHHhhcCCCCCceeEEEEeCCCcCc--HHHHHHHHccCC-CCeEEEEeCcCCCC
Q 026547          133 SVLDQLLKDSENEGSFDYAFVDADKVNY--WNYHERLMKLLK-VGGIAVYDNTLWGG  186 (237)
Q Consensus       133 ~~~~~~~~~~~~~~~~D~i~id~~~~~~--~~~~~~~~~~L~-~gG~lv~~~~~~~g  186 (237)
                      +.+....     .++-.+||+-....-.  ...++.+.+.-+ .|..+++||.+...
T Consensus       139 ~~~~~~i-----~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP  190 (397)
T d1y4ia1         139 EEIRAAM-----RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSP  190 (397)
T ss_dssp             HHHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             HHHHHhc-----CCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCc
Confidence            4444331     3678899987542211  111222322223 45677778876443

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=80.71  E-value=5.3  Score=25.75  Aligned_cols=76  Identities=18%  Similarity=0.021  Sum_probs=51.8

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHccCCCC
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMKLLKVG  174 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~~L~~g  174 (237)
                      +|..||-++...+..+..++..|+.  |. ...+..+.+..+.     ...||+|++|...+.  -.++++.+.+.-+.=
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G~~--v~-~a~~g~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~i~~~~~~~   73 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAGHQ--VD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL   73 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hcccceeehhccCCCchhHHHHHHHHhcCccc
Confidence            6889999999999999999998862  33 4556666665553     268999999976544  346677776543222


Q ss_pred             eEEEEe
Q 026547          175 GIAVYD  180 (237)
Q Consensus       175 G~lv~~  180 (237)
                      -++++.
T Consensus        74 pvi~lt   79 (119)
T d2pl1a1          74 PILVLT   79 (119)
T ss_dssp             CEEEEE
T ss_pred             ceEeee
Confidence            345544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.71  E-value=3.6  Score=28.04  Aligned_cols=41  Identities=12%  Similarity=0.073  Sum_probs=29.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCchHHHHHHH
Q 026547           71 AKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNRETYEIGLP  113 (237)
Q Consensus        71 ~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~~~~~~a~~  113 (237)
                      .++||-+|+  |..+..+|+.+.+ +.+|+.+|.+.+.++...+
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence            468898987  6666666665533 4699999999987665444

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=80.50  E-value=3.7  Score=26.66  Aligned_cols=65  Identities=14%  Similarity=0.156  Sum_probs=47.9

Q ss_pred             EEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHc
Q 026547           97 QIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMK  169 (237)
Q Consensus        97 ~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~  169 (237)
                      +|..||-++...+..+..++..|+.  +. ...++.+.+..+.+     .+||+|++|...+.  -.++++.+.+
T Consensus         3 rILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~~~~-----~~~dlil~D~~mp~~dG~el~~~ir~   69 (123)
T d1mb3a_           3 KVLIVEDNELNMKLFHDLLEAQGYE--TL-QTREGLSALSIARE-----NKPDLILMDIQLPEISGLEVTKWLKE   69 (123)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHHHHH-----HCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHh-----CCCCEEEEEeccCCCcHHHHHHHHHh
Confidence            7999999999999999999998862  32 45666666655532     57999999975444  3466777754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=80.20  E-value=3.7  Score=30.33  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=49.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchH------HHHHHhhc
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALS------VLDQLLKD  141 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~~~  141 (237)
                      .+++.+|-.|.+.|- +..+++.+. .+.+|+.+|.++.  +.+.+.++..|  .++.++.+|..+      ......++
T Consensus         3 L~gKvalVTGas~GI-G~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~   77 (247)
T d2ew8a1           3 LKDKLAVITGGANGI-GRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVIST   77 (247)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            467889999976553 344443331 3679999998775  33444555555  468888888654      22222222


Q ss_pred             CCCCCceeEEEEeC
Q 026547          142 SENEGSFDYAFVDA  155 (237)
Q Consensus       142 ~~~~~~~D~i~id~  155 (237)
                         .+++|+++.++
T Consensus        78 ---~G~iDilVnnA   88 (247)
T d2ew8a1          78 ---FGRCDILVNNA   88 (247)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCEEEECC
Confidence               37899888664

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=80.12  E-value=5.8  Score=25.86  Aligned_cols=68  Identities=13%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             CCEEEEEeCCchHHHHHHHHHHhcCCCCcEEEEeccchHHHHHHhhcCCCCCceeEEEEeCCCcC--cHHHHHHHHc
Q 026547           95 DGQIMAIDVNRETYEIGLPVIKKAGVDHKINFIESEALSVLDQLLKDSENEGSFDYAFVDADKVN--YWNYHERLMK  169 (237)
Q Consensus        95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~D~i~id~~~~~--~~~~~~~~~~  169 (237)
                      +.+|..||-++...+..+..++..|... |. ...++.+.+..+.     ..+||+|++|...+.  -.++++.+..
T Consensus         4 ~lriLvVDD~~~~r~~i~~~L~~~g~~~-v~-~a~~g~~a~~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir~   73 (128)
T d1jbea_           4 ELKFLVVDDFSTMRRIVRNLLKELGFNN-VE-EAEDGVDALNKLQ-----AGGYGFVISDWNMPNMDGLELLKTIRA   73 (128)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHTTCCC-EE-EESSHHHHHHHHT-----TCCCCEEEEESCCSSSCHHHHHHHHHC
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCcE-EE-EecCchHHHHHHh-----cCCCCEEEEecccccCCHHHHHHHHHh
Confidence            5689999999999999999999988642 32 3456666665542     378999999976444  4567777754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.06  E-value=1.5  Score=28.39  Aligned_cols=50  Identities=18%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCc--------hHHHHHHHHHHhcCC
Q 026547           69 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQIMAIDVNR--------ETYEIGLPVIKKAGV  120 (237)
Q Consensus        69 ~~~~~vLeiG~G~G~~~~~la~~~~~-~~~v~~vD~~~--------~~~~~a~~~~~~~~~  120 (237)
                      ..|++++-+|.  |..++.+|..+.. +.+|+.++..+        +..+..++.+++.|+
T Consensus        19 ~~p~~vvIiGg--G~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV   77 (115)
T d1lvla2          19 ALPQHLVVVGG--GYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI   77 (115)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCCeEEEECC--CHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcc
Confidence            45789999988  6666666655432 56899999744        456677788887774