Citrus Sinensis ID: 026550

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVPLPEK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccEEEEccEEEEEEEEEEEEEEEEEccccEEEEEccccccccEEEEEcccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccEEEEcccEEEEEEEEEEEEEEEcccccEEEEccHHHccccHHHccccccccHccEEEEEEccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEccccccccccccccc
Coil and Loop (DISEMBL)
MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVthpfdvgdrcvIDGVQMVVEEMHILTTTFLrydnekifypnsvlatkpisnfyrstvDMRDAVEFAIDVFTPIEKISYLKSTIKNYleskprhwspthsVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSAtstvplpek
Flexible Loop (DISEMBL)
MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYpnsvlatkpISNFYRSTVDMRDAVEFAIdvftpiekISYLKSTIKNYleskprhwspthSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSatstvplpek
Low Complexity Region (SEG)
MQELNKLFTGivmvliiivwllivgllttkalllilSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVPLPEK
Disordered region (IsUnstruct)
*****KLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSA*********
Disordered Region (DISOPRED)
MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEV*****************
Disordered Region (DISEMBL)
MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSAT********
Disordered Region (DISPRO)
MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVV***********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVPLPEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q9LYG9	734	Mechanosensitive ion chan	yes	no	0.932	0.301	0.513	7e-64
Q84M97	742	Mechanosensitive ion chan	no	no	0.932	0.297	0.482	2e-56
F4IME2	908	Mechanosensitive ion chan	no	no	0.886	0.231	0.474	9e-51
Q9LPG3	881	Mechanosensitive ion chan	no	no	0.843	0.227	0.487	9e-51
Q9SYM1	856	Mechanosensitive ion chan	no	no	0.873	0.241	0.478	7e-46
Q9LH74	881	Mechanosensitive ion chan	no	no	0.805	0.216	0.477	1e-44
F4IME1	849	Mechanosensitive ion chan	no	no	0.852	0.237	0.458	6e-43
O74839	1011	Uncharacterized MscS fami	yes	no	0.843	0.197	0.276	8e-11
O25170	623	Uncharacterized MscS fami	yes	no	0.776	0.295	0.277	3e-07
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.624	0.237	0.304	5e-07

>sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1

 Score =  243 bits (621), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 168/224 (75%), Gaps = 3/224 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           +++LNKL T I+MV+ +++WLL++ + TTK LL   +Q+V   F+ G+T KN+FE+I+F+
Sbjct: 510 VKQLNKLVTAILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFV 569

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HP+DVGDRCV+DGV M+VEEM++LTT FL+ +NEK++YPN+VLATKPISN++RS  +
Sbjct: 570 FVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSP-N 628

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M + VEF+I   TP+ KI++LK  I  YLE  P+HW+P HSVVVK I++  K+ M LY  
Sbjct: 629 MGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSD 688

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVS 223
           H I F+   E+  RR+EL L +KR+ E+  I  Y +LPQ++ ++
Sbjct: 689 HTITFQENRERNLRRTELSLAIKRMLEDLHID-YTLLPQDINLT 731

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=2 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/224 (48%), Positives = 159/224 (70%), Gaps = 3/224 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           +++L+KL TGI+ V+  IVW++++ + +TK LL+  SQ +   F+ G+T KN+FE+ +F+
Sbjct: 518 VKQLDKLITGILTVITFIVWMVLLDIASTKLLLVFSSQFLGLAFMIGSTCKNIFESFMFV 577

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HP+DVGDRCV+DGV ++VEE+ +LTT FL+ DNEK+FYPNSVL +KPISNFYRS  D
Sbjct: 578 FVMHPYDVGDRCVVDGVMLLVEEIDLLTTVFLKIDNEKVFYPNSVLISKPISNFYRSP-D 636

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D V+F I   TP EKI  LK  I  YL +  +HW P   V+V+ I++  K+++ + + 
Sbjct: 637 MGDYVDFGIAFSTPAEKIGCLKGKIGEYLVANSQHWYPEAQVMVRAIENMNKLVLNILVQ 696

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVS 223
           H I F+ Y EK  RR+ L++ +KRI E+  I  Y +LPQ+V ++
Sbjct: 697 HTINFQVYVEKSLRRTALIIAIKRILEDLEID-YTLLPQDVNLT 739

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2

 Score =  200 bits (508), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 101/213 (47%), Positives = 148/213 (69%), Gaps = 3/213 (1%)

Query: 20  WLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQM 79
           WL+++ + ++K LL + SQVVL  F+FGNT K VFE+IIFLF+ HP+DVGDRC ID VQ+
Sbjct: 686 WLVLLEIASSKVLLFVSSQVVLLAFIFGNTVKTVFESIIFLFIVHPYDVGDRCEIDSVQL 745

Query: 80  VVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKIS 139
           VVEEM+ILTT FLRYDN KI YPNS+L  K I+N+YRS  DM DA+EF + + TP+EKIS
Sbjct: 746 VVEEMNILTTVFLRYDNLKIMYPNSLLWQKSINNYYRSP-DMGDAIEFCVHITTPLEKIS 804

Query: 140 YLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMI-MGLYITHIIIFENYEEKINRRSELV 198
            +K  I NY+++KP +W P   ++VK ++D  ++ + ++  H I  ++  E+  RR+ LV
Sbjct: 805 VIKQRISNYIDNKPEYWYPQAKIIVKDLEDLHIVRLAIWPCHRINHQDMAERWTRRAVLV 864

Query: 199 LELKRIFEEAAIRIYHVLPQEVQVSYVVSATST 231
            E+ +I  E  I+ +   P ++ V  + +  S+
Sbjct: 865 EEVIKILLELDIQ-HRFYPLDINVRTMPTVVSS 896

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1

 Score =  200 bits (508), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 143/203 (70%), Gaps = 3/203 (1%)

Query: 28  TTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHIL 87
           TTK LL+I SQ++L VF+FGN+ K +FEA+IF+FV HPFDVGDRC IDGVQM+VEEM+IL
Sbjct: 664 TTKFLLVISSQLLLVVFVFGNSCKTIFEAVIFVFVMHPFDVGDRCEIDGVQMIVEEMNIL 723

Query: 88  TTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKN 147
           TT FLR+DN+KI YPNS+L TKPI+N+YRS  DM+DA+EF + + TP EK + L+  I +
Sbjct: 724 TTVFLRFDNQKIVYPNSLLGTKPIANYYRSP-DMQDAIEFFVHIATPPEKTTALRQRILS 782

Query: 148 YLESKPRHWSPTHSVVVKHIKD-EKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFE 206
           Y+++K  HW P+  +V + +     + + ++ TH +  +N  E+  RR +L+ E+ R+  
Sbjct: 783 YVDNKKDHWHPSPMIVFRDMCGLNSVKIAMWPTHKMNHQNMGERYVRRGQLLEEIGRLCR 842

Query: 207 EAAIRIYHVLPQEVQVSYVVSAT 229
           E  I  Y + P  + V  + +AT
Sbjct: 843 ELDIE-YRLYPLNINVKSLPAAT 864

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1

 Score =  184 bits (466), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 101/211 (47%), Positives = 145/211 (68%), Gaps = 4/211 (1%)

Query: 28  TTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHIL 87
           +TK L+++ SQVV+  F+FGN  K VFE+II+LFV HPFDVGDRC IDGVQMVVEEM+IL
Sbjct: 636 STKFLVVMSSQVVVVAFIFGNMCKIVFESIIYLFVIHPFDVGDRCEIDGVQMVVEEMNIL 695

Query: 88  TTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKN 147
           TT FLR+DN+K+ YPNS+L TK I N+YRS  DM D +EF+I + TP EKI  +K  I +
Sbjct: 696 TTVFLRFDNQKVVYPNSLLWTKSIGNYYRSP-DMGDGIEFSIHITTPAEKIILIKQRITS 754

Query: 148 YLESKPRHWSPTHSVVVKHIKD-EKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFE 206
           Y+E K  HW P   +V K ++    + + ++ TH +  ++  EK  RRS+LV E+ +I  
Sbjct: 755 YIEGKKDHWYPAPMIVFKDMESLNSVRIAVWPTHRMNHQDMGEKWARRSQLVEEIAKICR 814

Query: 207 EAAIRIYHVLPQEVQVSYVVSATSTVPLPEK 237
           E  I  Y + P ++ V  + ++T+ +P+ ++
Sbjct: 815 ELDIE-YRLYPLDINVRNLPTSTA-LPVSDR 843

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 131/197 (66%), Gaps = 6/197 (3%)

Query: 43  VFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYP 102
            F+FGN+ K +FEAIIFLFV HPFDVGDRC IDGVQ+VVEEM+ILTT FLRYDN+KI YP
Sbjct: 678 AFVFGNSCKTIFEAIIFLFVMHPFDVGDRCEIDGVQLVVEEMNILTTVFLRYDNQKIIYP 737

Query: 103 NSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSV 162
           NSVL TKPI+N+YRS  DM DAVEF + + TP EKI+ +K  I +Y+++K  +W P   +
Sbjct: 738 NSVLGTKPIANYYRSP-DMGDAVEFCVHIATPPEKITAIKQRILSYVDNKKDYWYPAPMI 796

Query: 163 VVKHIKD-EKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQ 221
           V   + D   + + +++TH +  ++  E+  RR  L+ E+ +   E  I  Y + P  + 
Sbjct: 797 VFLSMDDLNSVKIAVWLTHRMNHQDMGERYIRRGLLLEEVGKTCRELDIE-YRLYPLNIN 855

Query: 222 VSYV---VSATSTVPLP 235
           V  +    + TS+  +P
Sbjct: 856 VRSLPPTANPTSSDRIP 872

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/205 (45%), Positives = 135/205 (65%), Gaps = 3/205 (1%)

Query: 28  TTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHIL 87
           T+K LL + SQVVL  F+FGN+ K VFE+IIFLF+ HP+DVGDR +ID V+MVVEEM+IL
Sbjct: 627 TSKYLLFLTSQVVLLAFMFGNSLKTVFESIIFLFIIHPYDVGDRLLIDTVEMVVEEMNIL 686

Query: 88  TTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKN 147
           TT FLR DN KI YPN +L  K I N+ RS  DM D V   + + TP EKI+ +K  I +
Sbjct: 687 TTVFLRADNLKIVYPNILLWQKAIHNYNRSP-DMGDEVTCCVHITTPPEKIAAIKQRISS 745

Query: 148 YLESKPRHWSPTHSVVVKHIKDEKMI-MGLYITHIIIFENYEEKINRRSELVLELKRIFE 206
           Y++SKP +W P   V+VK ++D  ++ + +++ H I  +N  E+  RR+ L+ E+ +I  
Sbjct: 746 YIDSKPEYWYPKADVIVKDVEDLNIVRIAIWLCHKINHQNMGERFTRRALLIEEVIKILL 805

Query: 207 EAAIRIYHVLPQEVQVSYVVSATST 231
           E  I+ Y   P ++ V  + +  S+
Sbjct: 806 ELDIQ-YRFHPLDINVKTMPTVVSS 829

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 103/210 (49%), Gaps = 10/210 (4%)

Query: 10  GIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAV----FLFGNTAKNVFEAIIFLFVTHP 65
           GI M ++ ++ L I   L  +    +L+     +    +LF  +A+ +  +IIF+FV HP
Sbjct: 598 GICMFIVAVITLFIFLYLIARNFSGVLTSAGTTLLGLSWLFSGSAQELLSSIIFVFVKHP 657

Query: 66  FDVGDR--CVIDG--VQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDM 121
           +DVGDR   +I+G     +V+E+ I++T F     + I  PNS+L T  I N  RS   +
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSD-GI 716

Query: 122 RDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYITH 180
            D V   +   T +++I  L+  I ++L+ + R + P     V  + D   M + +   H
Sbjct: 717 ADPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRDYKPDLLTEVTDLPDLYSMSLCVVFFH 776

Query: 181 IIIFENYEEKINRRSELVLELKRIFEEAAI 210
              F++   ++ RR+  +  L    +E  I
Sbjct: 777 KYNFQDEVLRMRRRNMFMCALMTYMQELDI 806

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 14/198 (7%)

Query: 2   QELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFG--------NTAKNV 53
           +E+  L   +V  LI IV LL  G+L  K L   +S ++ ++ + G        +   N 
Sbjct: 359 KEVINLILKVVYFLIFIVALL--GVL--KQLGFNVSAIIASLGIGGLAVALAVKDVLANF 414

Query: 54  FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISN 113
           F ++I L + + F  GD  V   V+  V EM +  TT   +DN  +  PNS LA KPI N
Sbjct: 415 FASVILL-LDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRN 473

Query: 114 FYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMI 173
           + R  V  R  +E  +   +    +      IK  LE+ P+  +   S  ++++ D + +
Sbjct: 474 WSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADS-ALQNVSDYRYM 532

Query: 174 MGLYITHIIIFENYEEKI 191
               I  I  F  Y+  +
Sbjct: 533 FKKDIVSIDDFLGYKNNL 550

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 13/161 (8%)

Query: 2   QELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFG--------NTAKNV 53
           +E+  L   +V  LI IV LL  G+L  K L   +S ++ ++ + G        +   N 
Sbjct: 359 KEVINLILKVVYFLIFIVALL--GVL--KQLGFNVSAIIASLGIGGLAVALAVKDVLANF 414

Query: 54  FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISN 113
           F ++I L + + F  GD  V   V+  V EM +  TT   +DN  +  PNS LA KPI N
Sbjct: 415 FASVILL-LDNSFSQGDWIVCGEVEGTVVEMGLRRTTIRAFDNALLSVPNSELAGKPIRN 473

Query: 114 FYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPR 154
           + R  V  R  +E  +   +    +      IK  LE+ P+
Sbjct: 474 WSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPK 514

Helicobacter pylori (strain J99) (taxid: 85963)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
225444788	772	PREDICTED: uncharacterized protein At5g1	0.974	0.299	0.662	1e-83
297738590	644	unnamed protein product [Vitis vinifera]	0.974	0.358	0.662	2e-83
255546009	753	conserved hypothetical protein [Ricinus	0.962	0.302	0.677	4e-82
449452751	762	PREDICTED: mechanosensitive ion channel	0.966	0.300	0.637	2e-81
449534231	354	PREDICTED: mechanosensitive ion channel	0.936	0.627	0.644	5e-80
356558409	878	PREDICTED: uncharacterized protein At5g1	0.949	0.256	0.671	4e-78
225444790	772	PREDICTED: uncharacterized protein At5g1	0.978	0.300	0.641	1e-76
356532770	789	PREDICTED: uncharacterized protein At5g1	0.936	0.281	0.648	2e-75
224068408	684	predicted protein [Populus trichocarpa]	0.932	0.323	0.660	1e-73
255546013	585	conserved hypothetical protein [Ricinus	0.983	0.398	0.582	4e-71

>gi|225444788|ref|XP_002278293.1| PREDICTED: uncharacterized protein At5g12080-like [Vitis vinifera]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 189/234 (80%), Gaps = 3/234 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ELNK+ +G+++++IIIVWLL++G  TT  L+ I SQ++L  F+FGNT K VFEAIIF+
Sbjct: 537 IEELNKIASGVMLIVIIIVWLLLMGFATTNVLVFISSQLLLVAFMFGNTCKTVFEAIIFV 596

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCVIDGVQMVVEEM+ILTT FLRYDNEKIFYPNSVLATKPISNFYRS  +
Sbjct: 597 FVMHPFDVGDRCVIDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSP-E 655

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D+VEFA+D  T +E I+ LK+ IK YLESKP+HW P HSV+VK I D  +M MGLY+T
Sbjct: 656 MSDSVEFAVDFSTSMETIAALKARIKTYLESKPQHWRPGHSVLVKDIVDVNQMNMGLYVT 715

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVP 233
           H I F+NY +K +RRSELV+ELK+IFEE  I+ YH+LPQEV V  V SA    P
Sbjct: 716 HTINFQNYGDKSSRRSELVIELKKIFEELNIK-YHLLPQEVHVRSVDSAPPVFP 768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738590|emb|CBI27835.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 155/234 (66%), Positives = 189/234 (80%), Gaps = 3/234 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ELNK+ +G+++++IIIVWLL++G  TT  L+ I SQ++L  F+FGNT K VFEAIIF+
Sbjct: 409 IEELNKIASGVMLIVIIIVWLLLMGFATTNVLVFISSQLLLVAFMFGNTCKTVFEAIIFV 468

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCVIDGVQMVVEEM+ILTT FLRYDNEKIFYPNSVLATKPISNFYRS  +
Sbjct: 469 FVMHPFDVGDRCVIDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSP-E 527

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D+VEFA+D  T +E I+ LK+ IK YLESKP+HW P HSV+VK I D  +M MGLY+T
Sbjct: 528 MSDSVEFAVDFSTSMETIAALKARIKTYLESKPQHWRPGHSVLVKDIVDVNQMNMGLYVT 587

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVP 233
           H I F+NY +K +RRSELV+ELK+IFEE  I+ YH+LPQEV V  V SA    P
Sbjct: 588 HTINFQNYGDKSSRRSELVIELKKIFEELNIK-YHLLPQEVHVRSVDSAPPVFP 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546009|ref|XP_002514064.1| conserved hypothetical protein [Ricinus communis] gi|223546520|gb|EEF48018.1| conserved hypothetical protein [Ricinus communis]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 160/236 (67%), Positives = 191/236 (80%), Gaps = 8/236 (3%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ELN+L +G+V+V++IIVWLLI+G LTTK L+ I SQ +L  F+FGNTAK VFEA+IF+
Sbjct: 521 IEELNRLGSGVVVVVVIIVWLLIMGFLTTKVLVFISSQFLLVAFMFGNTAKTVFEAMIFV 580

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCVIDGVQMVVEEM+ILTT FLRYDNEKIFYPNS+LATKPISNFYRS  +
Sbjct: 581 FVMHPFDVGDRCVIDGVQMVVEEMNILTTIFLRYDNEKIFYPNSILATKPISNFYRSP-E 639

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M DAVEFA+DV T IE I  LK+ IK YLESKP+HW P HSV VK I+D  KM M LY+ 
Sbjct: 640 MSDAVEFAVDVSTSIETIGLLKAKIKAYLESKPQHWRPGHSVQVKEIEDVNKMKMALYVN 699

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVPLP 235
           H I F+N  ++ NRRS+LVLE+K+ FEE  IR YH+LPQEV+VSYV S     P+P
Sbjct: 700 HTINFQNAADRGNRRSDLVLEMKKYFEELGIR-YHLLPQEVRVSYVNS-----PIP 749

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452751|ref|XP_004144122.1| PREDICTED: mechanosensitive ion channel protein 10-like [Cucumis sativus]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/232 (63%), Positives = 190/232 (81%), Gaps = 3/232 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ELNKL + +++++III WLL++G LTT+ L+ I SQ++L VF+FGNTA+ VFEAIIF+
Sbjct: 531 IEELNKLSSAVILIVIIIEWLLLMGFLTTQVLVFISSQILLVVFMFGNTARTVFEAIIFV 590

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCV+DGVQMVVEEM+ILTT FLRYDNEKIFYPNSVLATKPISN+YRS  +
Sbjct: 591 FVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSP-E 649

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D+++F++D  T IE I  LK+ IK YLESKP+ W P +SVVVK I++  KM + L + 
Sbjct: 650 MSDSIDFSVDFSTSIESIGALKARIKTYLESKPQFWRPNYSVVVKEIENVNKMKLALCVN 709

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATST 231
           H I F+NY +K NRRS+LVLELK+IFEE  I+ YH+LPQEVQ++YV SA  +
Sbjct: 710 HTINFQNYGDKSNRRSDLVLELKKIFEELGIK-YHLLPQEVQLNYVSSAAPS 760

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449534231|ref|XP_004174069.1| PREDICTED: mechanosensitive ion channel protein 10-like, partial [Cucumis sativus]

 Score =  303 bits (775), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 145/225 (64%), Positives = 186/225 (82%), Gaps = 3/225 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ELNKL + +++++III WLL++G LTT+ L+ I SQ++L VF+FGNTA+ VFEAIIF+
Sbjct: 132 IEELNKLSSAVILIVIIIEWLLLMGFLTTQVLVFISSQILLVVFMFGNTARTVFEAIIFV 191

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCV+DGVQMVVEEM+ILTT FLRYDNEKIFYPNSVLATKPISN+YRS  +
Sbjct: 192 FVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSP-E 250

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D+++F++D  T IE I  LK+ IK YLESKP+ W P +SVVVK I++  KM + L + 
Sbjct: 251 MSDSIDFSVDFSTSIESIGALKARIKTYLESKPQFWRPNYSVVVKEIENVNKMKLALCVN 310

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSY 224
           H I F+NY +K NRRS+LVLELK+IFEE  I+ YH+LPQEVQ++Y
Sbjct: 311 HTINFQNYGDKSNRRSDLVLELKKIFEELGIK-YHLLPQEVQLNY 354

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558409|ref|XP_003547499.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 153/228 (67%), Positives = 186/228 (81%), Gaps = 3/228 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           + +LN L + IV+++I IVWLLI+G L T+ L+ I SQ++L VF+FGNTAK VFEAIIF+
Sbjct: 653 VDDLNMLASVIVLIVITIVWLLIMGFLNTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFV 712

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCVIDGVQMVVEEM+IL+T FLRYDNEKIFYPNSVLATKPISNFYRS  +
Sbjct: 713 FVMHPFDVGDRCVIDGVQMVVEEMNILSTIFLRYDNEKIFYPNSVLATKPISNFYRSP-E 771

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D+VEFA+DV T IE I  LK+ +K YLESKP+HW P HSV+VK I++  KM M  Y+T
Sbjct: 772 MSDSVEFAVDVSTSIESIGALKTKLKAYLESKPQHWRPNHSVLVKDIENVNKMKMAFYVT 831

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVS 227
           H I F+NY +K NRRSELVLELK+I E+  I+ YH+LPQEV +S+V S
Sbjct: 832 HTINFQNYGDKNNRRSELVLELKKILEDLNIK-YHLLPQEVHLSHVRS 878

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444790|ref|XP_002278315.1| PREDICTED: uncharacterized protein At5g12080 [Vitis vinifera] gi|297738591|emb|CBI27836.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/234 (64%), Positives = 187/234 (79%), Gaps = 2/234 (0%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ELNK+ +G+ +++IIIVWLL++GL+TTK L+LI SQ++L+ F+FGNT K VFEA+IF+
Sbjct: 536 IEELNKITSGVTLIVIIIVWLLLMGLVTTKVLILISSQLLLSAFMFGNTCKTVFEAMIFV 595

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCVIDGVQM VEE++ILTT FLRYDNEKIFYPNSVLATKPISNFYRS   
Sbjct: 596 FVMHPFDVGDRCVIDGVQMTVEEVNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEM 655

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
             D+VEFA+D  T +E I+ LK  IK YLE+KP+HW P HSV+VK I    +M M LY+T
Sbjct: 656 GGDSVEFAVDFSTSMETIAALKDGIKTYLENKPQHWRPVHSVLVKDIVHVNQMNMALYVT 715

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVP 233
           H I F+NY +K +RRSELV+ELK+IFEE  I+ YH+LPQEV +  V SA    P
Sbjct: 716 HTINFQNYGDKSSRRSELVIELKKIFEELNIK-YHLLPQEVHLRSVDSAPPLFP 768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532770|ref|XP_003534944.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/225 (64%), Positives = 185/225 (82%), Gaps = 3/225 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           + +LN L + IV+++I +VWLLI+G L T+ L+ I SQ++L VF+FGNTAK VFEAIIF+
Sbjct: 524 VDDLNMLASVIVIIVITVVWLLIMGFLNTQVLVFISSQLLLVVFMFGNTAKAVFEAIIFV 583

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFD+GDRCV+DGVQMVVEEM+ILTT FLRYDNEKIFYPNSVLATKPISNFYRS  +
Sbjct: 584 FVIHPFDIGDRCVVDGVQMVVEEMNILTTVFLRYDNEKIFYPNSVLATKPISNFYRSP-E 642

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M+D+VEF++DV T IE I  LK+ +K YLESKP+HW   H+V+VK I++  KM M L +T
Sbjct: 643 MQDSVEFSVDVSTSIESIGALKAKLKAYLESKPQHWCSNHNVLVKDIENVNKMKMCLNVT 702

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSY 224
           H I F+NY+E+ +RRSELVLELK+I E+  I+ YH+LPQEV +SY
Sbjct: 703 HTINFQNYKERNSRRSELVLELKKILEDLNIK-YHLLPQEVHLSY 746

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068408|ref|XP_002326113.1| predicted protein [Populus trichocarpa] gi|222833306|gb|EEE71783.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/224 (66%), Positives = 182/224 (81%), Gaps = 3/224 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ELNKL +  V+V+I+ VWLL++G LTTK L+ I SQ++L VF+FGN+AK VFEAIIF+
Sbjct: 463 IEELNKLASAAVLVVIVAVWLLVMGYLTTKVLVFISSQLLLVVFIFGNSAKTVFEAIIFV 522

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVGDRCVIDGVQMVVEEM+ILTT FLRYDNEKIFYPN+VLATKPISNFYRS  +
Sbjct: 523 FVMHPFDVGDRCVIDGVQMVVEEMNILTTVFLRYDNEKIFYPNTVLATKPISNFYRSP-E 581

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D+VEFA+D+ T IE I  LK+ IK YLESKP+HW P HSV VK I++  KM M LY  
Sbjct: 582 MSDSVEFAVDISTSIETIGALKARIKTYLESKPQHWRPGHSVQVKEIENVNKMRMALYAN 641

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVS 223
           H I F+N  ++ NRRS+LVLELK+ FE+  I+ YH+LPQ+V +S
Sbjct: 642 HTINFQNSGDRGNRRSDLVLELKKCFEDLGIK-YHLLPQQVHLS 684

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546013|ref|XP_002514066.1| conserved hypothetical protein [Ricinus communis] gi|223546522|gb|EEF48020.1| conserved hypothetical protein [Ricinus communis]

 Score =  273 bits (698), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 180/237 (75%), Gaps = 4/237 (1%)

Query: 1   MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFL 60
           ++ LN+L + +++V+IIIVWLL++G LT + L++ILSQ +L  F+FGNTAK+VFEA+IF+
Sbjct: 343 IENLNRLASLVMLVVIIIVWLLVMGFLTFQVLVVILSQFILVSFMFGNTAKSVFEAVIFV 402

Query: 61  FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
           FV HPFDVG++C IDG QMVVEEM+ILTTTFLRYD EKI+YPNSVLA+KP+ NFYRS   
Sbjct: 403 FVIHPFDVGNQCNIDGEQMVVEEMNILTTTFLRYDGEKIYYPNSVLASKPLGNFYRSP-P 461

Query: 121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
           M D VEFAI + T +E I  L+  IK YLE+ PR W   HSV  K I+D  KM + LY+ 
Sbjct: 462 MMDTVEFAISLGTQMETIEKLQEKIKTYLENNPRRWRHDHSVQFKEIEDVNKMKVALYVN 521

Query: 180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQV-SYVVSATSTVPLP 235
           H I F+N  ++  RRS+L+LE+KRIFEE  I  YH+LPQ+V + SYV   ++ VPLP
Sbjct: 522 HTINFQNISKRGKRRSDLILEMKRIFEELKIE-YHLLPQQVNLTSYVEPTSAQVPLP 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2143069	734	MSL10 "mechanosensitive channe	0.932	0.301	0.464	1.9e-51
TAIR|locus:2180811	742	MSL9 "mechanosensitive channel	0.932	0.297	0.441	1.6e-46
TAIR|locus:2202965	856	MSL6 "mechanosensitive channel	0.835	0.231	0.485	7.9e-45
TAIR|locus:2024927	881	MSL4 "mechanosensitive channel	0.805	0.216	0.479	8.9e-45
TAIR|locus:2099382	881	MSL5 "mechanosensitive channel	0.776	0.208	0.502	1.4e-43
TAIR|locus:2827671	849	AT2G17000 "AT2G17000" [Arabido	0.822	0.229	0.462	9.7e-40
DICTYBASE|DDB_G0277253	870	DDB_G0277253 "mechanosensitive	0.801	0.218	0.292	1.4e-17
UNIPROTKB|G4NH50	952	MGG_03937 "Serine/threonine pr	0.675	0.168	0.331	2.6e-14
ASPGD|ASPL0000007479	943	AN6053 [Emericella nidulans (t	0.704	0.177	0.302	1.1e-13
POMBASE|SPCC1183.11	1011	SPCC1183.11 "MS ion channel pr	0.700	0.164	0.296	1e-11

TAIR|locus:2143069 MSL10 "mechanosensitive channel of small conductance-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 104/224 (46%), Positives = 149/224 (66%)

Query:     1 MQELNKLFTGXXXXXXXXXXXXXXXXXXXXXXXXXXSQVVLAVFLFGNTAKNVFEAIIFL 60
             +++LNKL T                           +Q+V   F+ G+T KN+FE+I+F+
Sbjct:   510 VKQLNKLVTAILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFV 569

Query:    61 FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
             FV HP+DVGDRCV+DGV M+VEEM++LTT FL+ +NEK++YPN+VLATKPISN++RS  +
Sbjct:   570 FVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSP-N 628

Query:   121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
             M + VEF+I   TP+ KI++LK  I  YLE  P+HW+P HSVVVK I++  K+ M LY  
Sbjct:   629 MGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSD 688

Query:   180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVS 223
             H I F+   E+  RR+EL L +KR+ E+  I  Y +LPQ++ ++
Sbjct:   689 HTITFQENRERNLRRTELSLAIKRMLEDLHID-YTLLPQDINLT 731

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0008381 "mechanically-gated ion channel activity" evidence=IDA;IMP

GO:0050982 "detection of mechanical stimulus" evidence=IMP

GO:0006820 "anion transport" evidence=IDA

TAIR|locus:2180811 MSL9 "mechanosensitive channel of small conductance-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 99/224 (44%), Positives = 141/224 (62%)

Query:     1 MQELNKLFTGXXXXXXXXXXXXXXXXXXXXXXXXXXSQVVLAVFLFGNTAKNVFEAIIFL 60
             +++L+KL TG                          SQ +   F+ G+T KN+FE+ +F+
Sbjct:   518 VKQLDKLITGILTVITFIVWMVLLDIASTKLLLVFSSQFLGLAFMIGSTCKNIFESFMFV 577

Query:    61 FVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVD 120
             FV HP+DVGDRCV+DGV ++VEE+ +LTT FL+ DNEK+FYPNSVL +KPISNFYRS  D
Sbjct:   578 FVMHPYDVGDRCVVDGVMLLVEEIDLLTTVFLKIDNEKVFYPNSVLISKPISNFYRSP-D 636

Query:   121 MRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKD-EKMIMGLYIT 179
             M D V+F I   TP EKI  LK  I  YL +  +HW P   V+V+ I++  K+++ + + 
Sbjct:   637 MGDYVDFGIAFSTPAEKIGCLKGKIGEYLVANSQHWYPEAQVMVRAIENMNKLVLNILVQ 696

Query:   180 HIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVS 223
             H I F+ Y EK  RR+ L++ +KRI E+  I  Y +LPQ+V ++
Sbjct:   697 HTINFQVYVEKSLRRTALIIAIKRILEDLEID-YTLLPQDVNLT 739

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008381 "mechanically-gated ion channel activity" evidence=IMP

GO:0050982 "detection of mechanical stimulus" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2202965 MSL6 "mechanosensitive channel of small conductance-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 7.9e-45, P = 7.9e-45
 Identities = 98/202 (48%), Positives = 138/202 (68%)

Query:    37 SQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDN 96
             SQVV+  F+FGN  K VFE+II+LFV HPFDVGDRC IDGVQMVVEEM+ILTT FLR+DN
Sbjct:   645 SQVVVVAFIFGNMCKIVFESIIYLFVIHPFDVGDRCEIDGVQMVVEEMNILTTVFLRFDN 704

Query:    97 EKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW 156
             +K+ YPNS+L TK I N+YRS  DM D +EF+I + TP EKI  +K  I +Y+E K  HW
Sbjct:   705 QKVVYPNSLLWTKSIGNYYRSP-DMGDGIEFSIHITTPAEKIILIKQRITSYIEGKKDHW 763

Query:   157 SPTHSVVVKHIKDEKMI-MGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHV 215
              P   +V K ++    + + ++ TH +  ++  EK  RRS+LV E+ +I  E  I  Y +
Sbjct:   764 YPAPMIVFKDMESLNSVRIAVWPTHRMNHQDMGEKWARRSQLVEEIAKICRELDIE-YRL 822

Query:   216 LPQEVQVSYVVSATSTVPLPEK 237
              P ++ V  + ++T+ +P+ ++
Sbjct:   823 YPLDINVRNLPTSTA-LPVSDR 843

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2024927 MSL4 "mechanosensitive channel of small conductance-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 8.9e-45, P = 8.9e-45
 Identities = 93/194 (47%), Positives = 136/194 (70%)

Query:    37 SQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDN 96
             SQ++L VF+FGN+ K +FEA+IF+FV HPFDVGDRC IDGVQM+VEEM+ILTT FLR+DN
Sbjct:   673 SQLLLVVFVFGNSCKTIFEAVIFVFVMHPFDVGDRCEIDGVQMIVEEMNILTTVFLRFDN 732

Query:    97 EKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW 156
             +KI YPNS+L TKPI+N+YRS  DM+DA+EF + + TP EK + L+  I +Y+++K  HW
Sbjct:   733 QKIVYPNSLLGTKPIANYYRSP-DMQDAIEFFVHIATPPEKTTALRQRILSYVDNKKDHW 791

Query:   157 SPTHSVVVKHIKDEKMI-MGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHV 215
              P+  +V + +     + + ++ TH +  +N  E+  RR +L+ E+ R+  E  I  Y +
Sbjct:   792 HPSPMIVFRDMCGLNSVKIAMWPTHKMNHQNMGERYVRRGQLLEEIGRLCRELDIE-YRL 850

Query:   216 LPQEVQVSYVVSAT 229
              P  + V  + +AT
Sbjct:   851 YPLNINVKSLPAAT 864

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2099382 MSL5 "mechanosensitive channel of small conductance-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.4e-43, P = 1.4e-43
 Identities = 94/187 (50%), Positives = 129/187 (68%)

Query:    37 SQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDN 96
             SQ++L  F+FGN+ K +FEAIIFLFV HPFDVGDRC IDGVQ+VVEEM+ILTT FLRYDN
Sbjct:   672 SQLLLVAFVFGNSCKTIFEAIIFLFVMHPFDVGDRCEIDGVQLVVEEMNILTTVFLRYDN 731

Query:    97 EKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW 156
             +KI YPNSVL TKPI+N+YRS  DM DAVEF + + TP EKI+ +K  I +Y+++K  +W
Sbjct:   732 QKIIYPNSVLGTKPIANYYRSP-DMGDAVEFCVHIATPPEKITAIKQRILSYVDNKKDYW 790

Query:   157 SPTHSVVVKHIKDEKMI-MGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHV 215
              P   +V   + D   + + +++TH +  ++  E+  RR  L+ E+ +   E  I  Y +
Sbjct:   791 YPAPMIVFLSMDDLNSVKIAVWLTHRMNHQDMGERYIRRGLLLEEVGKTCRELDIE-YRL 849

Query:   216 LPQEVQV 222
              P  + V
Sbjct:   850 YPLNINV 856

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2827671 AT2G17000 "AT2G17000" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 9.7e-40, P = 9.7e-40
 Identities = 92/199 (46%), Positives = 131/199 (65%)

Query:    37 SQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDN 96
             SQVVL  F+FGN+ K VFE+IIFLF+ HP+DVGDR +ID V+MVVEEM+ILTT FLR DN
Sbjct:   636 SQVVLLAFMFGNSLKTVFESIIFLFIIHPYDVGDRLLIDTVEMVVEEMNILTTVFLRADN 695

Query:    97 EKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW 156
              KI YPN +L  K I N+ RS  DM D V   + + TP EKI+ +K  I +Y++SKP +W
Sbjct:   696 LKIVYPNILLWQKAIHNYNRSP-DMGDEVTCCVHITTPPEKIAAIKQRISSYIDSKPEYW 754

Query:   157 SPTHSVVVKHIKDEKMI-MGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHV 215
              P   V+VK ++D  ++ + +++ H I  +N  E+  RR+ L+ E+ +I  E  I+ Y  
Sbjct:   755 YPKADVIVKDVEDLNIVRIAIWLCHKINHQNMGERFTRRALLIEEVIKILLELDIQ-YRF 813

Query:   216 LPQEVQVSYVVSATST-VP 233
              P ++ V  + +  S+ VP
Sbjct:   814 HPLDINVKTMPTVVSSRVP 832

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

DICTYBASE|DDB_G0277253 DDB_G0277253 "mechanosensitive ion channel domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 226 (84.6 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 58/198 (29%), Positives = 105/198 (53%)

Query:    37 SQVVLAV-FLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQ-MVVEEMHILTTTFLRY 94
             S  +LA+ F FG T +NVFE++I +F   PF+VGD+ VI+ ++ + V+ + I+ T+F   
Sbjct:   662 STTILALSFAFGTTLRNVFESLILIFFVRPFEVGDKVVINQLEGLFVDRIGIVFTSFKSL 721

Query:    95 DNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPR 154
             D + ++ PNS L    I N  RS  +    V+  ++  TP+EK+ +L+S +  +++++P 
Sbjct:   722 DGKAVYLPNSTLVMARIENHQRSE-EASVGVDVTVNFNTPVEKLYFLESKLDKWVKAQPD 780

Query:   155 HWSPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINR-RSELVLELKRIFEEAAIRIY 213
              W P   +    I     I   Y   II      ++I   ++E + ++K    E  +  +
Sbjct:   781 KWRPDIYLAFSAITGTNHITVRYGGSIIASWQDGKRIRIIKNEFLFKMKEWIGEIQLETF 840

Query:   214 HVLPQEVQVSYVVSATST 231
                P + QV  ++S T+T
Sbjct:   841 ---PPKQQVQ-ILSTTNT 854

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4NH50 MGG_03937 "Serine/threonine protein kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 196 (74.1 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 57/172 (33%), Positives = 86/172 (50%)

Query:    44 FLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGV---QMVVEEMHILTTTFLRYDNEKIF 100
             F+F  T +    + IFLFV HPFDVGDR  I G    Q++VE + +L T F R D  ++ 
Sbjct:   502 FVFAVTTQEFLGSCIFLFVKHPFDVGDRVDITGPEKEQLIVERISLLYTVFTRIDKMQVV 561

Query:   101 Y-PNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLE--SKPRHWS 157
               PN VL    I N  RS   M++ ++  +   T  E I  L+  ++ ++      R + 
Sbjct:   562 QVPNIVLNNLWIENVTRSKA-MKETIDVNVSYDTTFEDIELLRMEMEKFVRHPDNARDFM 620

Query:   158 PTHSVVVKHIKD-EKMIMGLYITHIIIFENYEEKINRRSE----LVLELKRI 204
             P  S+ V  + D +KM + + I H   + N   +  RRS+    L L LKR+
Sbjct:   621 PDFSISVGSVGDLDKMTLKVTIKHKSNWHNDAVRATRRSKFMCALALALKRV 672

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000007479 AN6053 [Emericella nidulans (taxid:162425)]

 Score = 190 (71.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 52/172 (30%), Positives = 88/172 (51%)

Query:    44 FLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRY-DNEKIFYP 102
             F+F  TA+ V  + IFLFV HPFD+GDR  ID    +V+ + +L + F    DN     P
Sbjct:   505 FVFATTAQEVLGSCIFLFVKHPFDIGDRVEIDSKPYIVQRISLLYSVFRNVNDNRVTQIP 564

Query:   103 NSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLES--KPRHWSPTH 160
             N VL T  I N+ RS+  M++ +   +++ T  E+I  LK  I+ ++ S    R + P  
Sbjct:   565 NVVLNTVWIDNYSRSSA-MQEKLTIEVNIDTTTEEIQALKDEIETFVRSPDNKRDFHPDV 623

Query:   161 SVVVKHIKD-EKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIR 211
              + V  +   +K+ + + + H   +     +  RRS+ ++ L    ++  IR
Sbjct:   624 DIEVSGVGALDKLELTVGLFHKSNWAIESVRAARRSKFMVALVAAVKKVPIR 675

GO:0005509 "calcium ion binding" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

POMBASE|SPCC1183.11 SPCC1183.11 "MS ion channel protein 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 172 (65.6 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 51/172 (29%), Positives = 88/172 (51%)

Query:    44 FLFGNTAKNVFEAIIFLFVTHPFDVGDRC--VIDGV--QMVVEEMHILTTTFLRYDNEKI 99
             +LF  +A+ +  +IIF+FV HP+DVGDR   +I+G     +V+E+ I++T F     + I
Sbjct:   636 WLFSGSAQELLSSIIFVFVKHPYDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVI 695

Query:   100 FYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPT 159
               PNS+L T  I N  RS   + D V   +   T +++I  L+  I ++L+ + R + P 
Sbjct:   696 QAPNSLLNTLWILNMRRSD-GIADPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRDYKPD 754

Query:   160 HSVVVKHIKD-EKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAI 210
                 V  + D   M + +   H   F++   ++ RR+  +  L    +E  I
Sbjct:   755 LLTEVTDLPDLYSMSLCVVFFHKYNFQDEVLRMRRRNMFMCALMTYMQELDI 806

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISM

GO:0033554 "cellular response to stress" evidence=IEP

GO:0034220 "ion transmembrane transport" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	8e-18
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	3e-10

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 78.0 bits (193), Expect = 8e-18
 Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 18/209 (8%)

Query: 11  IVMVLIIIVWLLIVGLLTTKALLLILSQVVLAV-FLFGNTAKNVFEAIIFLFVTHPFDVG 69
           +++V+ I++ L  +G+  + ALL  L  + LA+ F   +   N+   II LF   PF +G
Sbjct: 5   LIIVVGILIVLSYLGVNVS-ALLAGLGALGLALGFALQDLVSNLVSGIIILF-EKPFKIG 62

Query: 70  DRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAI 129
           D   I  V+  VE++ I +TT   +D   +  PNS + T  I N  RS    R  V   +
Sbjct: 63  DWIEIGDVEGTVEDIGIRSTTIRTFDGRLVTIPNSKILTSNIINLSRSPT-RRVEVSIGV 121

Query: 130 DVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIF----- 184
              +  +K+  +   +K      P         V+K  +   +      + +        
Sbjct: 122 AYSSDPKKLEKVIEILKEAAYEHPL--------VLKDPEPPVVFGEFGDSSLNFEVRVWV 173

Query: 185 -ENYEEKINRRSELVLELKRIFEEAAIRI 212
                E  N RSEL L +K+  EE  I I
Sbjct: 174 KTLPGEYFNVRSELNLRIKKALEENGIEI 202

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 18/211 (8%)

Query: 8   FTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAV-FLFGNTAKNVFEAIIFLFVTHPF 66
              I+++++ ++ +L V  +   +LL  L  + LA+     +   N+  A IFL +  PF
Sbjct: 90  LLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI-AGIFLLLERPF 148

Query: 67  DVGDRCVI-DGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAV 125
            VGD   I  GV+  VE++ + +TT    D   +  PNS L T  + N Y      R  V
Sbjct: 149 KVGDWIEIGSGVEGTVEDIGLRSTTIRTLDGRIVTIPNSKLFTANVVN-YSREPGRRVEV 207

Query: 126 EFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSVVVKHIKDEKMIMGLYITHIIIFE 185
           +  +   + +EK       +K  LE  P         V+        +  L  + I I  
Sbjct: 208 KVGVAYDSDLEKA---LKILKEVLEELPEVLKIEPEPVIG-------VSELGDSGINIRV 257

Query: 186 NY----EEKINRRSELVLELKRIFEEAAIRI 212
            +    E+  + + EL L +K   EEA I I
Sbjct: 258 RFWTNPEDLWSVQRELNLRIKEALEEAGIEI 288

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PRK10334	286	mechanosensitive channel MscS; Provisional	100.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	100.0
PRK11281	1113	hypothetical protein; Provisional	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
PRK11465	741	putative mechanosensitive channel protein; Provisi	100.0
COG3264	835	Small-conductance mechanosensitive channel [Cell e	100.0
COG0668	316	MscS Small-conductance mechanosensitive channel [C	100.0
KOG4629	714	consensus Predicted mechanosensitive ion channel [	99.97
TIGR00739	84	yajC preprotein translocase, YajC subunit. While t	90.18
PRK05585	106	yajC preprotein translocase subunit YajC; Validate	89.9
PF14801	54	GCD14_N: tRNA methyltransferase complex GCD14 subu	88.86
PF09953	57	DUF2187: Uncharacterized protein conserved in bact	87.08
smart00739	28	KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i	86.52
PRK05886	109	yajC preprotein translocase subunit YajC; Validate	84.5
COG4873	81	Uncharacterized protein conserved in bacteria [Fun	82.22

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=100.00  E-value=1.4e-49  Score=337.93  Aligned_cols=216  Identities=19%  Similarity=0.244  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550            3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE   82 (237)
Q Consensus         3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~   82 (237)
                      .+.+++++++++++++.++..+|++.+++++++|++|+++|||+|++++|++ ||++|+++|||++||||+++|..|+|+
T Consensus        68 ~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~-sGi~i~~~rpf~vGD~I~i~~~~G~V~  146 (286)
T PRK10334         68 FLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVL  146 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEECCEEEEEE
Confidence            5678899999999999999999999999999999999999999999999955 889999999999999999999999999


Q ss_pred             EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcE
Q 026550           83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHS  161 (237)
Q Consensus        83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~  161 (237)
                      +|+||+|+++++||+.++|||+++.+++++|||+.+ .++..+.++++|++|+++   +++.+++.++++|.+. +|+|.
T Consensus       147 ~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~-~rr~~~~v~V~y~~d~~~---~~~il~~~~~~~~~vl~~p~p~  222 (286)
T PRK10334        147 SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP-VRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILKDREMT  222 (286)
T ss_pred             EEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCC-eEEEEEEEEecCCCCHHH---HHHHHHHHHHhCCceecCCCCE
Confidence            999999999999999999999999999999999988 788999999999999887   8899999999999998 78999


Q ss_pred             EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecCCC
Q 026550          162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSAT  229 (237)
Q Consensus       162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~~~  229 (237)
                      +.+.+++|+++++++++|++     ..++++.+++++.+++++|+++||+ +|+|+++++..+.++.+
T Consensus       223 v~~~~~~dssi~~~v~~wv~-----~~~~~~~~~~~~~~I~~~f~~~gI~-ip~p~~~v~~~~~~~~~  284 (286)
T PRK10334        223 VRLNELGASSINFVVRVWSN-----SGDLQNVYWDVLERIKREFDAAGIS-FPYPQMDVNFKRVKEDK  284 (286)
T ss_pred             EEEEeeeCceEEEEEEEEEe-----cchhHHHHHHHHHHHHHHHHHCCCc-CCCCCeEEEeccCCccc
Confidence            99999999999999999873     3467889999999999999999999 99999999987666544

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=2.5e-44  Score=346.10  Aligned_cols=216  Identities=16%  Similarity=0.200  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550            3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE   82 (237)
Q Consensus         3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~   82 (237)
                      .+.+++++++++++++.+++.+|++.+++.+.+|++|+++|||+|++++|++ ||++|+++|||++||+|+++|..|+|+
T Consensus       874 ~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNfi-SGIiIL~erPfrVGD~I~I~~~~GtV~  952 (1109)
T PRK10929        874 AITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFI-SGLIILFEKPIRIGDTVTIRDLTGSVT  952 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCCEEEECCEEEEEE
Confidence            4678999999999999999999999999999999999999999999999955 999999999999999999999999999


Q ss_pred             EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcE
Q 026550           83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHS  161 (237)
Q Consensus        83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~  161 (237)
                      +|++|+|+++++||+.++|||+.+.+++|+|||+++..++..+.++|+|++|+++   +++.+.+++++++.+. +|+|.
T Consensus       953 ~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sDie~---v~~iL~eaa~~~~~VL~~P~P~ 1029 (1109)
T PRK10929        953 KINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADANSEE---VTEILLTAARRCSLVLDNPAPE 1029 (1109)
T ss_pred             EEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCCHHH---HHHHHHHHHHhCccccCCCCCE
Confidence            9999999999999999999999999999999999985568999999999999877   9999999999999997 89999


Q ss_pred             EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecC
Q 026550          162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVS  227 (237)
Q Consensus       162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~  227 (237)
                      |.+.+++++++++.+++|+    .++.+++.+++++..+++++|+++||+ +|+|++++|..+.+.
T Consensus      1030 V~~~~fgdssi~~elr~wv----~~~~~~~~v~~el~~~I~~~F~~~GIe-IPfPq~~v~i~~~~~ 1090 (1109)
T PRK10929       1030 VFLVDLQQGIQIFELRIYA----AEMGHRMPLRHEIHQLILAGFREHGID-MPFPPFQMRLESLGG 1090 (1109)
T ss_pred             EEEEecCCCceEEEEEEEE----cChhhHHHHHHHHHHHHHHHHHHCCCc-CCCCCeEEEeecCCC
Confidence            9999999999999999987    456788999999999999999999999 999999999986533

>PRK11281 hypothetical protein; Provisional

Probab=100.00  E-value=3.3e-44  Score=346.40  Aligned_cols=216  Identities=18%  Similarity=0.243  Sum_probs=203.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550            3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE   82 (237)
Q Consensus         3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~   82 (237)
                      .+.+++++++++++++++++.+|++.+++.+.+|++|+++|||+|++++|++ ||++|+++|||++||+|++||..|+|+
T Consensus       877 ~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNfI-SGiiIl~eRPfrIGD~I~I~~~~G~V~  955 (1113)
T PRK11281        877 AITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFV-SGLIILFERPVRIGDTVTIGTFSGTVS  955 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEECCEEEEEE
Confidence            4678899999999999999999999999999999999999999999999955 889999999999999999999999999


Q ss_pred             EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcE
Q 026550           83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHS  161 (237)
Q Consensus        83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~  161 (237)
                      +|++|+|+++++||+.|+|||+.+.++.|+|||.++...+..++++|+|++|+++   +++.+.+++++++.+. +|+|.
T Consensus       956 ~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi~~---v~~iL~eaa~~~p~Vl~~P~P~ 1032 (1113)
T PRK11281        956 KIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDLEK---VRELLLQAATENPRVMKEPEPQ 1032 (1113)
T ss_pred             EEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCHHH---HHHHHHHHHHcCcccccCCCCE
Confidence            9999999999999999999999999999999999985578999999999999887   9999999999999998 89999


Q ss_pred             EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecC
Q 026550          162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVS  227 (237)
Q Consensus       162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~  227 (237)
                      |.+.+++++++++.+++|+    .++.+++.+++++..+|+++|+++||+ +|||+++++..++.+
T Consensus      1033 V~~~~fgdssi~~~lr~wv----~~~~~~~~v~s~L~~~I~~~f~e~GIe-IpfPq~~V~i~~~~~ 1093 (1113)
T PRK11281       1033 VFFLNFGASTLDHELRLYV----RELGDRSPTVDELNRRIDRLFRENDIN-IAFNQLDVFLKNQKG 1093 (1113)
T ss_pred             EEEEeccCceEEEEEEEEE----cCHhhHHHHHHHHHHHHHHHHHHCCCc-CCCCCeeEEecCCCc
Confidence            9999999999999999997    466789999999999999999999999 999999999876543

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=100.00  E-value=1.8e-42  Score=282.75  Aligned_cols=204  Identities=30%  Similarity=0.416  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEEEE
Q 026550            5 NKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEM   84 (237)
Q Consensus         5 ~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I   84 (237)
                      ++++++++++++++.++..+|.+.+++++++|++|+++||++|+.++|++ ||++++++|||++||||+++|..|+|+||
T Consensus         1 ~~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~-~gi~i~~~~pf~vGD~I~i~~~~G~V~~I   79 (206)
T PF00924_consen    1 NKIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFI-SGIIILFERPFKVGDRIEIGGVEGRVEEI   79 (206)
T ss_dssp             --HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHCC-SS-TT-EEESSS-EEEEEEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCccCCCEEEEEEeehHHHhc
Confidence            36889999999999999999999999999999999999999999999976 77899999999999999999999999999


Q ss_pred             EeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcEEE
Q 026550           85 HILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHSVV  163 (237)
Q Consensus        85 ~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~v~  163 (237)
                      +||+|+++++||+.++|||+++.++++.|||+..+..+..+.+.+++++|+++++++.+.+.+.+++++... .++|.+.
T Consensus        80 ~l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  159 (206)
T PF00924_consen   80 GLRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRVV  159 (206)
T ss_dssp             -SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEEE
T ss_pred             CcceeeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeEE
Confidence            999999999999999999999999999999993338899999999999998888999999999999999887 6889999


Q ss_pred             EEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCc
Q 026550          164 VKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIR  211 (237)
Q Consensus       164 ~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~  211 (237)
                      +..++++++.+++++++..  .++.+++..|++++.+++++|+++||+
T Consensus       160 ~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~gI~  205 (206)
T PF00924_consen  160 VDEIGDSSLEFRIRVYVKN--QDPEKYWEIRSEIRKRILEILEEHGIE  205 (206)
T ss_dssp             EEEE-SSSEEEEEEEEEEC-----CCHHHHHHHHHHHHHHHHHHHT--
T ss_pred             EccccCCceEEEEEEEEEe--CchhhHHHHHHHHHHHHHHHHHHccCC
Confidence            9999999999999998753  347889999999999999999999997

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=3.9e-41  Score=312.26  Aligned_cols=213  Identities=15%  Similarity=0.134  Sum_probs=182.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEE
Q 026550            2 QELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVV   81 (237)
Q Consensus         2 ~~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V   81 (237)
                      ..+.+++++++++++++.+++.+|++++++++++|++|+++|||+|++++|++ ||++|+++|||++||||+++|..|+|
T Consensus       511 ~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~i-sGi~Il~e~pf~vGD~I~v~g~~GtV  589 (741)
T PRK11465        511 TLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDII-TGVFIQFENGMNTGDLVTIGPLTGTV  589 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEECCeEEEE
Confidence            35778889999999999999999999999999999999999999999999966 88999999999999999999999999


Q ss_pred             EEEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCC----CCC
Q 026550           82 EEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPR----HWS  157 (237)
Q Consensus        82 ~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~----~~~  157 (237)
                      ++|++|+|++|++||+.++|||+++.+  ++|||+..  .+..+++.|+|++|.+++.++.+.+.+.+.++|.    +.+
T Consensus       590 e~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~~--~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~~~il~  665 (741)
T PRK11465        590 ERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRGI--GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIG  665 (741)
T ss_pred             EEEeeeEEEEEcCCCCEEEEECCccee--eEEeccCc--eEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCccccccccC
Confidence            999999999999999999999999974  99999875  4678899999999998855543333333444554    233


Q ss_pred             CCcEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecC
Q 026550          158 PTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVS  227 (237)
Q Consensus       158 ~~~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~  227 (237)
                      +++.+.+.+++++++.+++++|+     ++.++|.++.+++++++++|+++||+ +|+|+.+  ..+.++
T Consensus       666 ~p~~vgV~~lgdSsi~lrvr~~t-----~p~~qw~v~rel~~~IK~~Fde~GIe-IP~~tv~--v~~~~~  727 (741)
T PRK11465        666 EPNFAGIVGLTNTAFTLRVSFTT-----LPLKQWTVRFALDSQVKKHFDLAGVR-APVQTYQ--VLPAPG  727 (741)
T ss_pred             CCCeEEEEEecCceEEEEEEEEE-----CcchHHHHHHHHHHHHHHHHHHCCCC-CCCCceE--eecCCC
Confidence            44567889999999999999975     67889999999999999999999999 6655544  444433

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=9.4e-42  Score=314.34  Aligned_cols=213  Identities=19%  Similarity=0.250  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550            3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE   82 (237)
Q Consensus         3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~   82 (237)
                      .+.+++.|.+..++.+..++..|++.+++....|++|+++||++|++++| |.||+.|+++|||||||||++++.+|+|.
T Consensus       599 ~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~N-FVSGlIiL~ErpvkvGD~It~g~~~G~V~  677 (835)
T COG3264         599 SITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSN-FVSGLIILFERPVKVGDTVTIGTVSGTVR  677 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHH-hhhhhhhheecCcccCCEEEECCceEEEE
Confidence            46789999999999999999999999999999999999999999999999 56999999999999999999999999999


Q ss_pred             EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcE
Q 026550           83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHS  161 (237)
Q Consensus        83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~  161 (237)
                      +|+.|.|+++++||+.+++||+.|.++.+.|||.++...|..+.++++|++|+++   +++.+.+.++.||.+. +|+|.
T Consensus       678 ~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~~---V~~~Ll~~A~~~p~Vl~~P~P~  754 (835)
T COG3264         678 KISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPEL---VRELLLEAAREHPRVLKDPAPE  754 (835)
T ss_pred             EEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHHH---HHHHHHHHHHhCCCccCCCCCe
Confidence            9999999999999999999999999999999999998889999999999999888   9999999999999998 89999


Q ss_pred             EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEee
Q 026550          162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSY  224 (237)
Q Consensus       162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~  224 (237)
                      |.+.+++++++++++++|+    .+..+...+++++...|.+.|+++||+ +|+|+.++++++
T Consensus       755 v~f~~fg~s~L~fELr~~v----~~~~~~~~~~~~l~~~I~~~fre~gI~-ipfpq~~v~l~~  812 (835)
T COG3264         755 VFFTAFGASSLDFELRVYV----AELGDRMPVRSELNRAILDRFRENGIE-IPFPQREVRLKN  812 (835)
T ss_pred             eEeecccccceeEEEEEEe----eccccccchHHHHHHHHHHHHHHcCCC-CCCchHheEecC
Confidence            9999999999999999997    456666679999999999999999999 999999999997

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.2e-38  Score=275.44  Aligned_cols=212  Identities=26%  Similarity=0.337  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEc-CeeEEE
Q 026550            3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVID-GVQMVV   81 (237)
Q Consensus         3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~-~~~G~V   81 (237)
                      .+.++.++++++++++.++..+|++.+++++++|+.|+++|||+|++++|++ +|++++++|||++||||+++ +..|+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~-~Gi~il~~~~f~vGD~I~i~~~~~G~V  164 (316)
T COG0668          86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI-AGIFLLLERPFKVGDWIEIGSGVEGTV  164 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhHhheecCcCcCCEEEECCCceEEE
Confidence            3678899999999999999999999999999999999999999999999966 88999999999999999999 799999


Q ss_pred             EEEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC--CCC
Q 026550           82 EEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW--SPT  159 (237)
Q Consensus        82 ~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~--~~~  159 (237)
                      ++|++|+|+++++||+.+++||+++.++.+.|||+.+ .++..+.+.++|++|+++   +++.+++.+++.+...  +|+
T Consensus       165 ~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~-~~~~~~~v~v~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~  240 (316)
T COG0668         165 EDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREP-GRRVEVKVGVAYDSDLEK---ALKILKEVLEELPEVLKIEPE  240 (316)
T ss_pred             EEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCC-cEEEEEEEeeccCCCHHH---HHHHHHHHHHhcccccccCCC
Confidence            9999999999999999999999999999999999999 688999999999999888   7788888887777764  788


Q ss_pred             cEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeee
Q 026550          160 HSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYV  225 (237)
Q Consensus       160 ~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~  225 (237)
                      |.+.+.+++++++.+.+++|+     +..+++..++++...++++++++||+ +|+|++.++..+.
T Consensus       241 ~~v~~~~~~~~~~~i~v~~~t-----~~~~~~~~~~~~~~~i~~~~~~~gi~-i~~p~~~~~~~~~  300 (316)
T COG0668         241 PVIGVSELGDSGINIRVRFWT-----NPEDLWSVQRELNLRIKEALEEAGIE-IPYPQQSVLLGEL  300 (316)
T ss_pred             cEEEEeeccCCceEEEEEEEe-----cchhHHHHHHHHHHHHHHHHHHcCCC-CCCCCeeEECcCC
Confidence            999999999999999999975     55568999999999999999999999 9999999994433

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=99.97  E-value=3.1e-31  Score=244.52  Aligned_cols=232  Identities=45%  Similarity=0.769  Sum_probs=220.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEE
Q 026550            1 MQELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMV   80 (237)
Q Consensus         1 i~~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~   80 (237)
                      |+++.+++.+++.++++++.+-.+|++...+++..+...+++.|+++++.++++.|.+|++..+||++||+|.+||+.-.
T Consensus       480 V~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~v  559 (714)
T KOG4629|consen  480 VNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLV  559 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCCCCCc
Q 026550           81 VEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTH  160 (237)
Q Consensus        81 V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~~~~~  160 (237)
                      |+++++++|.+..+||+.+++||+.+.+++|.||.|++ .+...+++.++..++.++++++++.+.+++++.|..+.|.+
T Consensus       560 VeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~N~rRS~-~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~  638 (714)
T KOG4629|consen  560 VEEMNLLSTVFLRVDGRKIFIPNSVLWTKAISNYRRSP-DMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDL  638 (714)
T ss_pred             EEEeccceEEEEEECCeEEEeecHHHHhhhhhhhhcCc-cccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccch
Confidence            99999999999999999999999999999999999999 88999999999999999999999999999999999998899


Q ss_pred             EEEEEeeeC-ceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecCCCCCCCCC
Q 026550          161 SVVVKHIKD-EKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSATSTVPLP  235 (237)
Q Consensus       161 ~v~~~~~~~-~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~~~~~~~~~  235 (237)
                      .+.+.++++ +.+.+.+++.|+.+|||...+|..|.++..++.+.+++.||+ +..+|+++...+.+ +...+.+|
T Consensus       639 ~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~-y~l~p~~in~~~~~-~~~~d~~~  712 (714)
T KOG4629|consen  639 MVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIE-YTLYPLDINLKNLP-PVSSDRSP  712 (714)
T ss_pred             hhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcc-eeecCcchhhhcCC-CcccCCCC
Confidence            999999998 889999999999999999999999999999999999999999 99999999988877 44444444

>TIGR00739 yajC preprotein translocase, YajC subunit

Probab=90.18  E-value=1.3  Score=30.74  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             eCCCCCCcEEEE-cCeeEEEEEEEeEEEEEEEeCCcEEEE
Q 026550           63 THPFDVGDRCVI-DGVQMVVEEMHILTTTFLRYDNEKIFY  101 (237)
Q Consensus        63 ~~pf~vGD~I~i-~~~~G~V~~I~l~~T~i~~~~g~~v~I  101 (237)
                      ....++||+|.. +|..|+|.+++=-+..++..+|..+.+
T Consensus        35 ~~~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~   74 (84)
T TIGR00739        35 IESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITF   74 (84)
T ss_pred             HHhCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence            455789999987 889999999987666666666666554

While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.

>PRK05585 yajC preprotein translocase subunit YajC; Validated

Probab=89.90  E-value=1.1  Score=32.60  Aligned_cols=42  Identities=19%  Similarity=0.144  Sum_probs=32.1

Q ss_pred             eCCCCCCcEEEE-cCeeEEEEEEEeEEEEEEEeCCcEEEEecc
Q 026550           63 THPFDVGDRCVI-DGVQMVVEEMHILTTTFLRYDNEKIFYPNS  104 (237)
Q Consensus        63 ~~pf~vGD~I~i-~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs  104 (237)
                      .+..++||+|.. +|..|+|.+++=-...++..+|..+.+--+
T Consensus        50 ~~~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~~r~   92 (106)
T PRK05585         50 LSSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKIQKS   92 (106)
T ss_pred             HHhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEEEhH
Confidence            456789999965 899999999987666677777766665433

>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A

Probab=88.86  E-value=0.28  Score=30.73  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=12.4

Q ss_pred             eCCCCCCcEEEEcCeeEEEEEEEe
Q 026550           63 THPFDVGDRCVIDGVQMVVEEMHI   86 (237)
Q Consensus        63 ~~pf~vGD~I~i~~~~G~V~~I~l   86 (237)
                      ..||+.||+|++-+..|+-.-+.|
T Consensus         3 ~Gpf~~GdrVQlTD~Kgr~~Ti~L   26 (54)
T PF14801_consen    3 RGPFRAGDRVQLTDPKGRKHTITL   26 (54)
T ss_dssp             --S--TT-EEEEEETT--EEEEE-
T ss_pred             cCCCCCCCEEEEccCCCCeeeEEE
Confidence            579999999999887776544433

>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function

Probab=87.08  E-value=1.3  Score=28.17  Aligned_cols=26  Identities=27%  Similarity=0.289  Sum_probs=20.6

Q ss_pred             CCCCcEEEE-cCeeEEEEEEEeEEEEE
Q 026550           66 FDVGDRCVI-DGVQMVVEEMHILTTTF   91 (237)
Q Consensus        66 f~vGD~I~i-~~~~G~V~~I~l~~T~i   91 (237)
                      -++||+|++ +|..|+|+++.=.|..+
T Consensus         4 a~vGdiIefk~g~~G~V~kv~eNSVIV   30 (57)
T PF09953_consen    4 AKVGDIIEFKDGFTGIVEKVYENSVIV   30 (57)
T ss_pred             cccCcEEEEcCCcEEEEEEEecCcEEE
Confidence            479999999 78999999987555443

It includes the uncharacterised YkvS protein from Bacillus subtilis.

>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif

Probab=86.52  E-value=1.4  Score=23.10  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=15.9

Q ss_pred             CCCCCcEEEE-c----CeeEEEEEEE
Q 026550           65 PFDVGDRCVI-D----GVQMVVEEMH   85 (237)
Q Consensus        65 pf~vGD~I~i-~----~~~G~V~~I~   85 (237)
                      +|++||.|+| +    |..|.|.++.
T Consensus         1 ~~~~G~~V~I~~G~~~g~~g~i~~i~   26 (28)
T smart00739        1 KFEVGDTVRVIAGPFKGKVGKVLEVD   26 (28)
T ss_pred             CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence            5789999998 2    3668887764

Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.

>PRK05886 yajC preprotein translocase subunit YajC; Validated

Probab=84.50  E-value=3.9  Score=29.78  Aligned_cols=38  Identities=16%  Similarity=0.138  Sum_probs=28.5

Q ss_pred             CCCCCCcEEEE-cCeeEEEEEEEeEEEEEEEeCCcEEEE
Q 026550           64 HPFDVGDRCVI-DGVQMVVEEMHILTTTFLRYDNEKIFY  101 (237)
Q Consensus        64 ~pf~vGD~I~i-~~~~G~V~~I~l~~T~i~~~~g~~v~I  101 (237)
                      ...++||.|.. +|..|+|.+|+=-+..++..+|..+.+
T Consensus        37 ~~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~   75 (109)
T PRK05886         37 ESLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW   75 (109)
T ss_pred             HhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence            45789999976 889999999986555555555655554

>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.22  E-value=1.7  Score=28.47  Aligned_cols=44  Identities=18%  Similarity=0.161  Sum_probs=29.9

Q ss_pred             HHHhhHHHHHHHHhhhheeeeCCCCCCcEEEE-cCeeEEEEEEEeEEEE
Q 026550           43 VFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVI-DGVQMVVEEMHILTTT   90 (237)
Q Consensus        43 gla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i-~~~~G~V~~I~l~~T~   90 (237)
                      .+.+|....+ +.+ .  ..-.--+|||.|++ ||..|.|++++=-|..
T Consensus         5 ~~~~~~a~~~-~~~-~--~~m~~a~vgniief~dgl~g~vek~nensvi   49 (81)
T COG4873           5 AKYFQKALLC-LKE-R--KLMKIAKVGNIIEFKDGLTGVVEKVNENSVI   49 (81)
T ss_pred             HHHHHhhhhh-hce-e--eEeeeeeccceEEEcccceeeeeeecCCcEE
Confidence            3455555556 423 3  22345689999999 8999999998866644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 13/211 (6%)

Query: 4   LNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAV-FLFGNTAKNVFEAIIFLFV 62
           L+ L    ++   +I  L  VG+ T  +++ +L    L V      +  N   A + L +
Sbjct: 69  LSALVRYGIIAFTLIAALGRVGVQTA-SVIAVLGAAGLVVGLALQGSLSN-LAAGVLLVM 126

Query: 63  THPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMR 122
             PF  G+   + GV   V  + I +TT    D + I  PN  +    I NF R  V  R
Sbjct: 127 FRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPV-RR 185

Query: 123 DAVEFAIDVFTPIEKISYLKSTIKNYLESKPR-HWSPTHSVVVKHIKDEKMIMGLYITHI 181
           +     +   + I+++   K  + N ++S+ R       +V +  +    +   +     
Sbjct: 186 NEFIIGVAYDSDIDQV---KQILTNIIQSEDRILKDREMTVRLNELGASSINFVVR---- 238

Query: 182 IIFENYEEKINRRSELVLELKRIFEEAAIRI 212
            ++ N  +  N   +++  +KR F+ A I  
Sbjct: 239 -VWSNSGDLQNVYWDVLERIKREFDAAGISF 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 42/254 (16%), Positives = 81/254 (31%), Gaps = 61/254 (24%)

Query: 20  WLLIVGLL----TTKALLLILSQVVLAVFLFG---------NTAKNVFEAIIFLFVTHPF 66
            +LI G+L    T  AL + LS  V     F          N+ + V E +  L   +  
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--YQI 209

Query: 67  DVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNS---------------------V 105
           D       D    +   +H +     R    K  Y N                      +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 106 LAT---KPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHWSPTHSV 162
           L T   K +++F  +      +++      TP E  S L   +    +  PR    T+  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 163 VVKHIKDEKMIMGLYITHIIIFENYE----EKINRRSELVL------ELKRIFEEAAIRI 212
            +       +I       +  ++N++    +K+    E  L      E +++F+  ++  
Sbjct: 329 RL------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-- 380

Query: 213 YHVLPQEVQVSYVV 226
               P    +  ++
Sbjct: 381 ---FPPSAHIPTIL 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	100.0
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	100.0
1nz9_A	58	Transcription antitermination protein NUSG; transc	91.56
2e6z_A	59	Transcription elongation factor SPT5; KOW motif, s	89.67
2do3_A	69	Transcription elongation factor SPT5; KOW motif, s	88.33
3sgr_A	25	Tandem repeat of amyloid-related segment of alpha	84.33

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=100.00  E-value=2.2e-49  Score=337.18  Aligned_cols=216  Identities=19%  Similarity=0.249  Sum_probs=201.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550            3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE   82 (237)
Q Consensus         3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~   82 (237)
                      .+.+++++++++++++.++..+|++++++++++|++|+++|||+|++++|++ ||++|+++|||++||||+++|..|+|+
T Consensus        68 ~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~l~n~~-sGi~i~~~~pf~vGD~I~i~g~~G~V~  146 (286)
T 2vv5_A           68 FLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVL  146 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHTTCSSCTTCEEESSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCCccCCCEEEECCEEEEEE
Confidence            4788999999999999999999999999999999999999999999999966 889999999999999999999999999


Q ss_pred             EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcE
Q 026550           83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHS  161 (237)
Q Consensus        83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~  161 (237)
                      +|++|+|+++++||+.++|||+.+.+++++|||+.+ .++..++++++|++|+++   +++.++++++++|.+. +|+|.
T Consensus       147 ~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~-~~r~~~~v~v~y~~d~~~---v~~~l~~~~~~~~~vl~~p~p~  222 (286)
T 2vv5_A          147 SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP-VRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILKDREMT  222 (286)
T ss_dssp             EECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSS-EEEEEEEEEECTTSCHHH---HHHHHHHHHHHCTTBCTTSCEE
T ss_pred             EEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCC-cEEEEEEEEEcCCCCHHH---HHHHHHHHHHhCcccccCCCCE
Confidence            999999999999999999999999999999999998 788899999999999877   8889999999999987 78899


Q ss_pred             EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecCCC
Q 026550          162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSAT  229 (237)
Q Consensus       162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~~~  229 (237)
                      +.+.+++++++++++++|+.     ..++|..+++++++++++|+++||+ +|+|+++++..++++..
T Consensus       223 v~v~~~~~~~i~~~v~~~~~-----~~~~~~~~~~l~~~i~~~~~~~gI~-ip~P~~~v~~~~~~~~~  284 (286)
T 2vv5_A          223 VRLNELGASSINFVVRVWSN-----SGDLQNVYWDVLERIKREFDAAGIS-FPYPQMDVNFKRVKEDK  284 (286)
T ss_dssp             EEEEEECSSSEEEEEEEEEE-----TTTHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECC----
T ss_pred             EEEEEecCCeEEEEEEEEEc-----cchHHHHHHHHHHHHHHHHHHCCCc-CCCCceEEEeccCCccc
Confidence            99999999999999999873     3578999999999999999999999 99999999998765543

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=100.00  E-value=9.5e-47  Score=320.94  Aligned_cols=216  Identities=18%  Similarity=0.253  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEE
Q 026550            3 ELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFGNTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVE   82 (237)
Q Consensus         3 ~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~   82 (237)
                      .+.+++++++++++++.++..+|++.+++++++|++|+++|||+|++++|++ ||++++++|||++||||+++|..|+|+
T Consensus        67 ~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~-~Gi~i~~~~pf~vGD~I~i~~~~G~V~  145 (285)
T 3udc_A           67 LTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMI-SGFFIIFEDQFSVGDYVTINGISGTVE  145 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHTTSCCTTCEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCccCCCEEEECCEEEEEE
Confidence            3567889999999999999999999999999999999999999999999966 889999999999999999999999999


Q ss_pred             EEEeEEEEEEEeCCcEEEEecccccCCcEEEEEcCCcceeEEEEEEEecCCCHHHHHH-HHHHHHHHHhhCCCCCCCCcE
Q 026550           83 EMHILTTTFLRYDNEKIFYPNSVLATKPISNFYRSTVDMRDAVEFAIDVFTPIEKISY-LKSTIKNYLESKPRHWSPTHS  161 (237)
Q Consensus        83 ~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~~~~~v~~~~~~~~i~~-~~~~i~~~l~~~~~~~~~~~~  161 (237)
                      +|++|+|+++++||+.+++||+++  ++++|||+.+  .+..+++.++|++|++++.+ +++.+++..+.++...++++.
T Consensus       146 ~I~l~~T~i~t~d~~~v~iPN~~l--~~i~N~s~~~--~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~~~~~~~~  221 (285)
T 3udc_A          146 EIGLRVTKIRGFSDGLHIIPNGEI--KMVTNLTKDS--MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDDLIEGPTV  221 (285)
T ss_dssp             EECSSEEEEEETTTEEEEEEGGGC--SCEEECSSSC--EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSSBSSCCEE
T ss_pred             EeeeeEEEEecCCCCEEEeccccc--ccccccCCCC--ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccccccCccc
Confidence            999999999999999999999999  4699999876  45678999999999988544 344455555555555577788


Q ss_pred             EEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHHHHHHHHHHHcCCcccccCCceEEEeeecCCC
Q 026550          162 VVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELVLELKRIFEEAAIRIYHVLPQEVQVSYVVSAT  229 (237)
Q Consensus       162 v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~gI~~~~~p~~~v~~~~~~~~~  229 (237)
                      +.+.+++++++++++++|+     ++.++|..+++++.+++++|+++||+ +|||++++|.++.++..
T Consensus       222 v~~~~~~~s~i~~~v~~~~-----~~~~~~~~~~~l~~~I~~~f~~~gI~-ipfP~~~v~~~~~~e~k  283 (285)
T 3udc_A          222 LGITDMQDSKLVIMVYAKT-----QPMQKWAVERDIRYRVKKMFDQKNIS-FPYPQMDVNFKRVKEDK  283 (285)
T ss_dssp             EEEEEEETTEEEEEEEEEE-----STTCHHHHHHHHHHHHHHHHHHTTCC-CCCCCCEEEEEEC----
T ss_pred             ccccccCCCEEEEEEEEEE-----CcchHHHHHHHHHHHHHHHHHHCCCc-CcCCCEEEEeCcCCCCC
Confidence            9999999999999999975     55678999999999999999999999 99999999998866543

>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4

Probab=91.56  E-value=0.82  Score=28.17  Aligned_cols=42  Identities=14%  Similarity=0.131  Sum_probs=29.4

Q ss_pred             CCCCCCcEEEE-c----CeeEEEEEEEe---EEEEEEEeCCcE--EEEeccc
Q 026550           64 HPFDVGDRCVI-D----GVQMVVEEMHI---LTTTFLRYDNEK--IFYPNSV  105 (237)
Q Consensus        64 ~pf~vGD~I~i-~----~~~G~V~~I~l---~~T~i~~~~g~~--v~IPNs~  105 (237)
                      -+|++||.|+| +    |..|.|.+++.   +.+...+.-|+.  +-+++++
T Consensus         3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~   54 (58)
T 1nz9_A            3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQ   54 (58)
T ss_dssp             CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGG
T ss_pred             cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHH
Confidence            47899999999 2    58899999975   345556666655  4444443

>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.67  E-value=0.37  Score=30.06  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=27.4

Q ss_pred             CCCCCCcEEEE-c----CeeEEEEEEEeEEEEEEEe---CCcEEEEecccc
Q 026550           64 HPFDVGDRCVI-D----GVQMVVEEMHILTTTFLRY---DNEKIFYPNSVL  106 (237)
Q Consensus        64 ~pf~vGD~I~i-~----~~~G~V~~I~l~~T~i~~~---~g~~v~IPNs~l  106 (237)
                      -.|.+||.|+| +    |..|+|++++--..++.-.   -.+.+.+|++++
T Consensus         6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv   56 (59)
T 2e6z_A            6 SGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQEL   56 (59)
T ss_dssp             SSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTE
T ss_pred             ccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHE
Confidence            46999999999 3    4889999987532222210   134566666655

>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5

Probab=88.33  E-value=1.2  Score=28.57  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             eeCCCCCCcEEEE-----cCeeEEEEEEE
Q 026550           62 VTHPFDVGDRCVI-----DGVQMVVEEMH   85 (237)
Q Consensus        62 ~~~pf~vGD~I~i-----~~~~G~V~~I~   85 (237)
                      +.|-|++||.|++     .|..|.|.++.
T Consensus        14 LrK~F~~GDHVkVi~G~~~getGlVV~v~   42 (69)
T 2do3_A           14 LRKYFKMGDHVKVIAGRFEGDTGLIVRVE   42 (69)
T ss_dssp             CCSSCCTTCEEEESSSTTTTCEEEEEEEC
T ss_pred             ceeeccCCCeEEEeccEEcCceEEEEEEe
Confidence            4688999999999     34789999885

>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}

Probab=84.33  E-value=0.71  Score=22.49  Aligned_cols=16  Identities=38%  Similarity=0.368  Sum_probs=12.8

Q ss_pred             CCcEEEEcC---eeEEEEE
Q 026550           68 VGDRCVIDG---VQMVVEE   83 (237)
Q Consensus        68 vGD~I~i~~---~~G~V~~   83 (237)
                      .||.|+++|   +.|.|.+
T Consensus         6 lgdvievggklkvlgdvie   24 (25)
T 3sgr_A            6 LGDVIEVGGKLKVLGDVIE   24 (26)
T ss_dssp             EEEEEEETTEEEEEEEEEE
T ss_pred             eeeeeeeCcEEEEeeeEEe
Confidence            489999988   5588876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	4e-12

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 57.8 bits (140), Expect = 4e-12
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 54  FEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISN 113
             A + L +  PF  G+   + GV   V  + I +TT    D + I  PN  +    I N
Sbjct: 6   LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIIN 65

Query: 114 F 114
           F
Sbjct: 66  F 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.9
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	99.73
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	98.39
d1nz9a_	58	N-utilization substance G protein NusG, C-terminal	92.48
d1nppa2	58	N-utilization substance G protein NusG, C-terminal	91.24
d1t9ha1	67	Probable GTPase EngC (YjeQ), N-terminal domain {Ba	83.57
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	83.28
d1v6ga2	40	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	83.21
d2e3ia1	71	Restin {Human (Homo sapiens) [TaxId: 9606]}	82.73
d2hqha1	72	Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}	82.33

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.9e-25  Score=145.07  Aligned_cols=67  Identities=28%  Similarity=0.409  Sum_probs=64.1

Q ss_pred             HHHHHHHHhhhheeeeCCCCCCcEEEEcCeeEEEEEEEeEEEEEEEeCCcEEEEecccccCCcEEEEE
Q 026550           48 NTAKNVFEAIIFLFVTHPFDVGDRCVIDGVQMVVEEMHILTTTFLRYDNEKIFYPNSVLATKPISNFY  115 (237)
Q Consensus        48 ~~~~n~~~~gi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~i~~~~g~~v~IPNs~l~~~~i~N~s  115 (237)
                      ++++|++ ||++++++|||++||||+++|..|+|++|+||+|++++.||+.+++||+++.++++.|||
T Consensus         1 GtlsN~~-sGi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           1 GSLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHH-HHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             CcHHHHH-HHhhheeeCCccCCCEEEECCEEEEEEEEeceEEEEEccCCCEEEEECHHHcCCccEECc
Confidence            4689966 889999999999999999999999999999999999999999999999999999999997

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=3.5e-17  Score=115.94  Aligned_cols=96  Identities=15%  Similarity=0.186  Sum_probs=88.7

Q ss_pred             ceeEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCC-CCCcEEEEEeeeCceEEEEEEEEEeecccchHHHHHHHHHHH
Q 026550          120 DMRDAVEFAIDVFTPIEKISYLKSTIKNYLESKPRHW-SPTHSVVVKHIKDEKMIMGLYITHIIIFENYEEKINRRSELV  198 (237)
Q Consensus       120 ~~~~~~~~~v~~~~~~~~i~~~~~~i~~~l~~~~~~~-~~~~~v~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~l~  198 (237)
                      .++..+.++|+|++|+++   +++.+++.+++++.+. +|+|.+.+.+++++++++++++|+.     ..++|.++++++
T Consensus         4 ~RR~~~~i~v~y~~d~~~---v~~il~~~~~~~~~v~~~p~p~v~~~~~~~s~i~~~v~~w~~-----~~~~~~~~~~l~   75 (101)
T d2vv5a2           4 VRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSN-----SGDLQNVYWDVL   75 (101)
T ss_dssp             EEEEEEEEEECTTSCHHH---HHHHHHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEE-----TTTHHHHHHHHH
T ss_pred             ceEEEEEEEEccCCCHHH---HHHHHHHHHHhChhhhcccCchhhcccCCCceEEEEEEEEec-----chHHHHHHHHHH
Confidence            778999999999999877   9999999999999998 8999999999999999999999873     346789999999


Q ss_pred             HHHHHHHHHcCCcccccCCceEEEee
Q 026550          199 LELKRIFEEAAIRIYHVLPQEVQVSY  224 (237)
Q Consensus       199 ~~i~~~l~~~gI~~~~~p~~~v~~~~  224 (237)
                      .+++++|+++||+ +|+|++++++.+
T Consensus        76 ~~I~~~l~~~gI~-ip~P~~~v~~~~  100 (101)
T d2vv5a2          76 ERIKREFDAAGIS-FPYPQMDVNFKR  100 (101)
T ss_dssp             HHHHHHHHHHTCC-CCCCEEEEEEEC
T ss_pred             HHHHHHHHHcCCc-CCCCcEEEEEec
Confidence            9999999999999 999999999875

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2.7e-07  Score=61.99  Aligned_cols=46  Identities=15%  Similarity=0.144  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhh
Q 026550            2 QELNKLFTGIVMVLIIIVWLLIVGLLTTKALLLILSQVVLAVFLFG   47 (237)
Q Consensus         2 ~~l~~i~~~~~~~i~~~~~l~~~g~~~~~ll~~~g~~~~~igla~q   47 (237)
                      +.+.+++++++++++++.+++.+|+|.+++++++|+.|+++|||+|
T Consensus        41 ~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGfa~Q   86 (86)
T d2vv5a3          41 DFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQ   86 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3578899999999999999999999999999999999999999998

>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.48  E-value=0.18  Score=29.94  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             CCCCCcEEEE-c----CeeEEEEEEE---eEEEEEEEeCCcE
Q 026550           65 PFDVGDRCVI-D----GVQMVVEEMH---ILTTTFLRYDNEK   98 (237)
Q Consensus        65 pf~vGD~I~i-~----~~~G~V~~I~---l~~T~i~~~~g~~   98 (237)
                      +|++||+|+| +    |..|+|+++.   -|.+.+.+.-|+.
T Consensus         4 ~F~~Gd~V~I~~GpF~g~~g~V~~i~~~k~rv~V~v~ifGr~   45 (58)
T d1nz9a_           4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRE   45 (58)
T ss_dssp             SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSE
T ss_pred             cccCCCEEEEeccCCCCCEEEEEEEcCCCCEEEEEEEecCCC
Confidence            6999999999 3    4889999984   3555555555544

>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.24  E-value=0.47  Score=27.97  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=26.7

Q ss_pred             CCCCCcEEEE-c----CeeEEEEEEEe---EEEEEEEeCCcEE
Q 026550           65 PFDVGDRCVI-D----GVQMVVEEMHI---LTTTFLRYDNEKI   99 (237)
Q Consensus        65 pf~vGD~I~i-~----~~~G~V~~I~l---~~T~i~~~~g~~v   99 (237)
                      .|++||+|+| +    |..|+|+++.-   |.+.+.+.-|+..
T Consensus         4 df~~Gd~V~I~~GpF~g~~g~V~~i~~~~~rv~V~v~~fGr~t   46 (58)
T d1nppa2           4 EFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMT   46 (58)
T ss_dssp             SCCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEEEEETTEEE
T ss_pred             cccCCCEEEEcccCCCCCEEEEEEEcCCCCEEEEEEeecCCCc
Confidence            4899999999 3    48899999853   6666677666653

>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Probable GTPase EngC (YjeQ), N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=83.57  E-value=0.26  Score=30.08  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=17.7

Q ss_pred             CCCCCCcEEEE---cCeeEEEEEEEeE
Q 026550           64 HPFDVGDRCVI---DGVQMVVEEMHIL   87 (237)
Q Consensus        64 ~pf~vGD~I~i---~~~~G~V~~I~l~   87 (237)
                      +|. |||+|++   ++-.|.+++|-=|
T Consensus        41 ~p~-VGD~V~~~~~~~~~g~I~~I~pR   66 (67)
T d1t9ha1          41 TPL-VGDYVVYQAENDKEGYLMEIKER   66 (67)
T ss_dssp             CCC-BTCEEEEECCTTSCEEEEEECCC
T ss_pred             ccC-cCcEEEEEEccCCeEEEEEEecC
Confidence            577 9999999   4467999887543

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.28  E-value=1.4  Score=26.15  Aligned_cols=24  Identities=17%  Similarity=0.373  Sum_probs=19.7

Q ss_pred             eeCCCCCCcEEEE-c----CeeEEEEEEE
Q 026550           62 VTHPFDVGDRCVI-D----GVQMVVEEMH   85 (237)
Q Consensus        62 ~~~pf~vGD~I~i-~----~~~G~V~~I~   85 (237)
                      +.|-|++||.|++ +    |..|.|.++.
T Consensus         7 LrK~F~~GDhVkVi~G~~~g~tGlVV~v~   35 (62)
T d2do3a1           7 LRKYFKMGDHVKVIAGRFEGDTGLIVRVE   35 (62)
T ss_dssp             CCSSCCTTCEEEESSSTTTTCEEEEEEEC
T ss_pred             heeccCCCCeEEEeccEEcCccEEEEEEe
Confidence            5788999999999 3    4789998774

>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Actin-binding LIM protein 2, abLIM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.24  Score=26.29  Aligned_cols=17  Identities=35%  Similarity=0.685  Sum_probs=14.7

Q ss_pred             eCCCCCCcEEEEcCeeE
Q 026550           63 THPFDVGDRCVIDGVQM   79 (237)
Q Consensus        63 ~~pf~vGD~I~i~~~~G   79 (237)
                      .+||-.||+|.++|.+.
T Consensus         7 r~pFP~GDRVTFnGKeC   23 (40)
T d1v6ga2           7 RLPFPPGDRVTFNGKEC   23 (40)
T ss_dssp             CCCCCSSSCEEEETTEE
T ss_pred             CCCCCCCCeEEEcCcee
Confidence            68999999999998654

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=0.71  Score=28.37  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=18.3

Q ss_pred             CCCCcEEEEcC-eeEEEEEEEeE
Q 026550           66 FDVGDRCVIDG-VQMVVEEMHIL   87 (237)
Q Consensus        66 f~vGD~I~i~~-~~G~V~~I~l~   87 (237)
                      |++||+|++++ ..|+|.-++-.
T Consensus         1 f~vG~rV~v~~~~~G~vryvG~~   23 (71)
T d2e3ia1           1 FRVGERVWVNGNKPGFIQFLGET   23 (71)
T ss_dssp             CCTTCEEEETTTEEEEEEEEEEC
T ss_pred             CccCCEEEECCCcEEEEEEEeec
Confidence            79999999965 67999988754

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.33  E-value=0.72  Score=28.44  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=18.5

Q ss_pred             CCCCCcEEEEcC--eeEEEEEEEe
Q 026550           65 PFDVGDRCVIDG--VQMVVEEMHI   86 (237)
Q Consensus        65 pf~vGD~I~i~~--~~G~V~~I~l   86 (237)
                      |+++||+|++.+  ..|+|.-++-
T Consensus         1 pl~vG~rV~v~~~~~~G~vryvG~   24 (72)
T d2hqha1           1 PLRVGSRVEVIGKGHRGTVAYVGA   24 (72)
T ss_dssp             CCSTTCEEEETTTCCEEEEEEEEC
T ss_pred             CcccCCEEEEcCCCEEEEEEEecc
Confidence            889999999953  6799988883