Citrus Sinensis ID: 026556

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MECKHKINVAIPITNMKNTQFSSPSTFSTSPPSQSSPRFPSPNHQQLSSPESSPSFKASPSQSSPNLAAPLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQFMDTSCFLDDNGIGSAWEPLWT
Secondary Structure (PSIPRED)
cccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccHcccccccccHHcccccccccccHHccccccccccccccc
Coil and Loop (DISEMBL)
meckhkinvaipitnmkntqfsspstfstsppsqssprfpspnhqqlsspesspsfkaspsqsspnlaaplspppivlspcaaCKILRRRCVEkcvlapyfpptepykftiahrVFGASNIIKFLQelpesqradAVSSMVYEASarirdpvygcaGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQFMdtscflddngigsaweplwt
Flexible Loop (DISEMBL)
MECKHKINVaipitnmkntqfssPSTFSTSPPSQSSPRFPSPNHQQLSSPESSPSFKASPSQSSPNLAAPLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQFMDTSCFLDDNGigsaweplwt
Low Complexity Region (SEG)
MECKHKINVAIPITNMKNtqfsspstfstsppsqssprfpspNHQQLsspesspsfkaspsqsspnlaaplspppIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSelqaqlakaqaelVTMESQQRNLITLICMEMAqsqeqvlqqqqqqqqqFMDTSCFLDDNGIGSAWEPLWT
Disordered region (IsUnstruct)
***************************************************************************IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELP*****DAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICM*****************************************
Disordered Region (DISOPRED)
******I*VAIPITNM*****************************************************************AACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELV*********************************************GIGSAWEPLW*
Disordered Region (DISEMBL)
MECKHKINVAIPITNMKNTQ************************************************APLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPE**********VYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQ****************MDTSCFLDDNGIGSAWEPLWT
Disordered Region (DISPRO)
*ECKHKINVAIPITNMKN***********************************************************LSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMA******************DTSCFL******SAW*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MECKHKINVAIPITNMKNTQFSSPSTFSTSPPSQSSPRFPSPNHQQLSSPESSPSFKASPSQSSPNLAAPLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxQRNLITLICMEMAQSQEQVLQQQQQQQQQFMDTSCFLDDNGIGSAWEPLWT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q9LQR0	190	LOB domain-containing pro	yes	no	0.645	0.805	0.676	8e-59
Q9SK08	232	LOB domain-containing pro	no	no	0.679	0.693	0.622	5e-57
Q8LBW3	193	LOB domain-containing pro	no	no	0.535	0.658	0.6	1e-40
Q9SA51	165	LOB domain-containing pro	no	no	0.468	0.672	0.625	3e-37
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.430	0.548	0.617	3e-34
Q9AT61	268	LOB domain-containing pro	no	no	0.628	0.555	0.424	4e-34
O64836	311	LOB domain-containing pro	no	no	0.434	0.331	0.592	6e-34
Q9SHE9	172	LOB domain-containing pro	no	no	0.459	0.633	0.688	1e-33
Q9FKZ3	313	LOB domain-containing pro	no	no	0.438	0.332	0.576	1e-32
Q8L8Q3	159	LOB domain-containing pro	no	no	0.434	0.647	0.601	7e-32

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  226 bits (577), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 130/170 (76%), Gaps = 17/170 (10%)

Query: 76  IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRAD 135
           +VLSPCAACKILRRRC E+CVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR D
Sbjct: 29  VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query: 136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195
           AV+SMVYEA ARIRDPVYGCAGAI HLQ+QVSELQAQLAKAQ E+V M+ Q+ NL+ LI 
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELI- 147

Query: 196 MEMAQSQEQVLQQQQQQQQQFM----DTSCFLDD----NGIGSAWEPLWT 237
                     + QQQ+Q+Q  M    +   FL+D    N     W+PLWT
Sbjct: 148 --------YNMDQQQKQEQDNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  220 bits (561), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 114/183 (62%), Positives = 133/183 (72%), Gaps = 22/183 (12%)

Query: 76  IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRAD 135
           +VLSPCAACKILRRRC +KCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR D
Sbjct: 51  VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 110

Query: 136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195
           AV+SMVYEA AR+RDPVYGCAGAI HLQ+QVSELQAQLAK Q ELV M+ Q+ +L+ LI 
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI- 169

Query: 196 MEMAQSQEQVLQQQQQQ---QQQFMDTSCFL-----DDNGIG-------------SAWEP 234
             M Q++  V +Q QQ+   +  F     F+     + N +G             S W+P
Sbjct: 170 YNMEQTKLSVQEQGQQKMSFESSFESGDEFISSPDEESNDLGFLEDNNNNNNSSMSWWDP 229

Query: 235 LWT 237
           LWT
Sbjct: 230 LWT 232

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 102/135 (75%), Gaps = 8/135 (5%)

Query: 79  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
           SPCA+CK+LRRRC + C+ APYFPP +P+KF I H+VFGASN+ K LQELP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 139 SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEM 198
           S+V+EA+AR+RDPVYGC GAI +LQ QVS+LQ QLA AQAE++ +  Q +N  TL     
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI--QMQNEPTL----- 119

Query: 199 AQSQEQVLQQQQQQQ 213
            QS  QVL+  Q  +
Sbjct: 120 -QSHHQVLELDQDHK 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 86/112 (76%), Gaps = 1/112 (0%)

Query: 78  LSPCAACKILRRRCV-EKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADA 136
           +SPCA CK+LRR+CV + CV APYFP  EPYKF I H++FGASN+ K LQEL E+ R+DA
Sbjct: 12  VSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDA 71

Query: 137 VSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQR 188
           V SMVYEA+ARI+DPVYGC G I  L +Q+  LQ QLA AQAEL+ + +  R
Sbjct: 72  VDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHR 123

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 77/102 (75%)

Query: 79  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
           SPCAACK LRR+C+  C+ APYFPP EP+KF   H++FGASN+ K L EL   QR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 139 SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAEL 180
           S+ YEA AR+RDPVYGC GAI +LQ+QV  LQ +L  A A+L
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9AT61|LBD13_ARATH LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/153 (42%), Positives = 98/153 (64%), Gaps = 4/153 (2%)

Query: 44  HQQLSSPESSPSFKASPSQSSPNLAAPLSPPPIV----LSPCAACKILRRRCVEKCVLAP 99
           ++ +   +  P+F+ +   +   +   ++ PP      ++PCAACK+LRRRC E+C  +P
Sbjct: 12  YETVKKIKKDPAFETTTDHAVMGIRRHVAVPPGTTLNTVTPCAACKLLRRRCAEECPFSP 71

Query: 100 YFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAI 159
           YF P EP+KF   H+VFGASN+ K L E+ ESQR DA +S+VYEA+ R+RDP+YGC GAI
Sbjct: 72  YFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAI 131

Query: 160 CHLQKQVSELQAQLAKAQAELVTMESQQRNLIT 192
             LQ  +  LQ++L   + E++  + Q+   IT
Sbjct: 132 SALQHHIQSLQSELTTVRTEILRHKYQEATTIT 164

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  144 bits (363), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 76/103 (73%)

Query: 79  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
           +PCAACK+LRR+C ++CV APYFPPT P KF   HRVFGASN+ K L +LP  QR D V+
Sbjct: 4   TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVN 63

Query: 139 SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELV 181
           S+ YEA ARIRDP+YGC G I  LQ+ + ++Q  L  A+ ELV
Sbjct: 64  SLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELV 106

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 86/109 (78%)

Query: 79  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
           SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 139 SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQ 187
           SMVYEA+AR+RDPVYGC GAI  LQ+Q+  LQAQLA AQAE+V +  +Q
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%)

Query: 79  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
           SPCAACK LRR+C ++CV APYFPP +P KF   H+VFGASN+ K L EL  +QR DAV+
Sbjct: 6   SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query: 139 SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVT 182
           S+ YEA AR+RDPVYGC G I  LQ ++ ++   L  A+ EL T
Sbjct: 66  SLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELAT 109

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 62/103 (60%), Positives = 75/103 (72%)

Query: 79  SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
           SPCAACK LRR+C   CV APYFPP EP KF   HR+FGASN+ K L E+   QR DAV+
Sbjct: 38  SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query: 139 SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELV 181
           S+ YEA AR++DPVYGC GAI  LQ+QV  LQ +L +  A+L+
Sbjct: 98  SLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224100841	178	predicted protein [Populus trichocarpa]	0.734	0.977	0.770	2e-75
315633204	219	lateral organ boundaries domain 1 [Popul	0.738	0.799	0.759	2e-70
388518463	223	unknown [Lotus japonicus]	0.801	0.852	0.678	5e-70
224109694	213	predicted protein [Populus trichocarpa]	0.645	0.718	0.796	2e-69
356576187	222	PREDICTED: LOB domain-containing protein	0.641	0.684	0.822	1e-68
449451890	203	PREDICTED: LOB domain-containing protein	0.658	0.768	0.771	3e-66
297746206	204	unnamed protein product [Vitis vinifera]	0.683	0.794	0.759	2e-65
225435213	1349	PREDICTED: carbamoyl-phosphate synthase	0.670	0.117	0.766	4e-65
357453757	198	LOB domain protein [Medicago truncatula]	0.763	0.914	0.664	1e-64
225435217	202	PREDICTED: LOB domain-containing protein	0.683	0.801	0.724	4e-64

>gi|224100841|ref|XP_002312035.1| predicted protein [Populus trichocarpa] gi|222851855|gb|EEE89402.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/179 (77%), Positives = 159/179 (88%), Gaps = 5/179 (2%)

Query: 59  SPSQSSPNLAAPLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGA 118
           SP  +SP+ AA L PPP+V++PCAACKILRRRCV+KCVLAPYFPP+EPYKFTIAHRVFGA
Sbjct: 5   SPGLTSPS-AATLPPPPVVITPCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGA 63

Query: 119 SNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQA 178
           SNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAI  LQKQVS+LQAQLAKAQA
Sbjct: 64  SNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAISQLQKQVSDLQAQLAKAQA 123

Query: 179 ELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQFMDTSCFLDDNGIGSAWEPLWT 237
           E+V M+ QQ NL+ L+CMEM QSQ++ +     QQ Q++DTSCFLD+N +G++WEPLWT
Sbjct: 124 EVVNMQCQQANLVALLCMEMKQSQQEPI----LQQHQYIDTSCFLDENNLGASWEPLWT 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315633204|gb|ADU54137.1| lateral organ boundaries domain 1 [Populus tremula x Populus alba]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 139/183 (75%), Positives = 160/183 (87%), Gaps = 8/183 (4%)

Query: 59  SPSQSSPNLA----APLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHR 114
           SP++SSPNL     A   PPP V+SPCAACKILRRRCV+KCVLAPYFPP+EPYKFTIAHR
Sbjct: 41  SPTKSSPNLTLPSAATPPPPPAVVSPCAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHR 100

Query: 115 VFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLA 174
           VFGASNIIKFLQELPESQRADAVSSMVYEA+ARIRDPVYGCAGAI  LQKQVS+LQAQLA
Sbjct: 101 VFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAISQLQKQVSDLQAQLA 160

Query: 175 KAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQFMDTSCFLDDNGIGSAWEP 234
           KAQAE+V+M+ QQ NL+ L+CMEM QSQ++ +     QQ Q++DTSCFLD+N +G++WEP
Sbjct: 161 KAQAEVVSMQCQQANLVALLCMEMTQSQQEPI----LQQHQYVDTSCFLDENNLGTSWEP 216

Query: 235 LWT 237
           LWT
Sbjct: 217 LWT 219

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518463|gb|AFK47293.1| unknown [Lotus japonicus]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 154/202 (76%), Gaps = 12/202 (5%)

Query: 36  SPRFPSPNHQQLSSPESSPSFKASPSQSSPNLAAPLSPPPIVLSPCAACKILRRRCVEKC 95
              FPSP+ +  S+  ++     +  Q            P+V+SPCAACK+LRRRCVEKC
Sbjct: 34  PIPFPSPSQRSPSATAAAAPPPPTSPQ------------PVVVSPCAACKVLRRRCVEKC 81

Query: 96  VLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGC 155
           VLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEA+ARIRDPVYGC
Sbjct: 82  VLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGC 141

Query: 156 AGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQ 215
           AGAIC LQKQVSELQAQLAKAQAE+V M+ Q  NL+ LICMEM Q+Q    QQ   Q Q 
Sbjct: 142 AGAICQLQKQVSELQAQLAKAQAEMVNMQCQHANLLALICMEMTQTQSPEQQQNIIQPQT 201

Query: 216 FMDTSCFLDDNGIGSAWEPLWT 237
            +D SCFL+DN  GSAWEPLWT
Sbjct: 202 HVDMSCFLEDNNFGSAWEPLWT 223

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109694|ref|XP_002315279.1| predicted protein [Populus trichocarpa] gi|222864319|gb|EEF01450.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 125/157 (79%), Positives = 142/157 (90%), Gaps = 4/157 (2%)

Query: 81  CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 140
           CAACKILRRRCV+KCVLAPYFPP+EPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSM
Sbjct: 61  CAACKILRRRCVDKCVLAPYFPPSEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 120

Query: 141 VYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQ 200
           VYEA+ARIRDPVYGCAGAI  LQKQVS+LQAQLAKAQAE+V M+ QQ NL+ L+CMEM Q
Sbjct: 121 VYEANARIRDPVYGCAGAISQLQKQVSDLQAQLAKAQAEVVNMQCQQANLVALLCMEMTQ 180

Query: 201 SQEQVLQQQQQQQQQFMDTSCFLDDNGIGSAWEPLWT 237
           SQ++ +     QQ Q++DTSCFLD+N +G++WEPLWT
Sbjct: 181 SQQEPI----LQQHQYVDTSCFLDENNLGTSWEPLWT 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576187|ref|XP_003556215.1| PREDICTED: LOB domain-containing protein 1-like [Glycine max]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 130/158 (82%), Positives = 140/158 (88%), Gaps = 6/158 (3%)

Query: 81  CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 140
           CAACKILRRRCVEKCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQRADAVSSM
Sbjct: 70  CAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSM 129

Query: 141 VYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQ 200
           VYEA+ARIRDPVYGCAGAIC LQKQVSELQAQLAKAQAE+V M+ QQ NL+ LICMEM+Q
Sbjct: 130 VYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSQ 189

Query: 201 SQEQ-VLQQQQQQQQQFMDTSCFLDDNGIGSAWEPLWT 237
           SQEQ VLQ Q       +D SCF++DN  G+AWEPLWT
Sbjct: 190 SQEQHVLQPQPH-----VDMSCFIEDNSFGTAWEPLWT 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451890|ref|XP_004143693.1| PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus] gi|449530814|ref|XP_004172387.1| PREDICTED: LOB domain-containing protein 1-like [Cucumis sativus]

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/162 (77%), Positives = 136/162 (83%), Gaps = 6/162 (3%)

Query: 76  IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRAD 135
           +VLSPCAACKILRRRCVEKCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPE QR D
Sbjct: 48  VVLSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPECQRTD 107

Query: 136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195
           AVSSMVYEA+AR+RDPVYG AGAIC LQKQVSELQAQLAKA+AE+  M+ QQ NL+ LIC
Sbjct: 108 AVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALIC 167

Query: 196 MEMAQSQEQVLQQQQQQQQQFMDTSCFLDDNGIGSAWEPLWT 237
           MEM QS E V       Q Q +DT+CFLDD  + S WEPLWT
Sbjct: 168 MEMRQSPEPVW------QPQLVDTTCFLDDATLSSPWEPLWT 203

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746206|emb|CBI16262.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 134/166 (80%), Gaps = 4/166 (2%)

Query: 76  IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRAD 135
           +VLSPCAACKILRRRC EKCVLAPYFPPT+P KFT AHRVFGASNIIKFLQELPE QRAD
Sbjct: 36  VVLSPCAACKILRRRCAEKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEYQRAD 95

Query: 136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195
           AVSSMVYEA ARIRDPVYGC GAIC LQKQVSELQAQLAKAQAELV M+ QQ NLI +IC
Sbjct: 96  AVSSMVYEAQARIRDPVYGCTGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLIAIIC 155

Query: 196 MEMAQSQEQVLQQQQQQQ----QQFMDTSCFLDDNGIGSAWEPLWT 237
           MEM+ S +    QQ          +   SCFLDDN  G+AWEPLWT
Sbjct: 156 MEMSGSPQPSSFQQSLDSFISPPSYQSGSCFLDDNITGAAWEPLWT 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435213|ref|XP_002282042.1| PREDICTED: carbamoyl-phosphate synthase large chain-like [Vitis vinifera]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 131/163 (80%), Gaps = 4/163 (2%)

Query: 79   SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
            SPCAACKILRRRC EKCVLAPYFPPT+P KFT AHRVFGASNIIKFLQELPE QRADAVS
Sbjct: 1184 SPCAACKILRRRCAEKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEYQRADAVS 1243

Query: 139  SMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEM 198
            SMVYEA ARIRDPVYGC GAIC LQKQVSELQAQLAKAQAELV M+ QQ NLI +ICMEM
Sbjct: 1244 SMVYEAQARIRDPVYGCTGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLIAIICMEM 1303

Query: 199  AQS-QEQVLQQQQQQQQ---QFMDTSCFLDDNGIGSAWEPLWT 237
            + S Q    QQ          +   SCFLDDN  G+AWEPLWT
Sbjct: 1304 SGSPQPSSFQQSLDSFISPPSYQSGSCFLDDNITGAAWEPLWT 1346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453757|ref|XP_003597159.1| LOB domain protein [Medicago truncatula] gi|355486207|gb|AES67410.1| LOB domain protein [Medicago truncatula]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/194 (66%), Positives = 145/194 (74%), Gaps = 13/194 (6%)

Query: 52  SSPSFKASPSQSSPNLAAPLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTI 111
           SS  F  SP+ S P +A     P +V+SPCAACKILRRRC EKCVLAPYFPPTEP KFT 
Sbjct: 10  SSLPFSQSPTSSQPPMA-----PQVVMSPCAACKILRRRCAEKCVLAPYFPPTEPSKFTT 64

Query: 112 AHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQA 171
           AHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQK+V+ELQA
Sbjct: 65  AHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKEVNELQA 124

Query: 172 QLAKAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQ-------QQQFMDTSCFLD 224
           QLAK+QAEL+ M+ QQ NL+ LICMEM ++  +  QQ              + +   F +
Sbjct: 125 QLAKSQAELINMQLQQSNLLALICMEMKETPNESPQQSMDNFISSPAYSSDYQNNLNFFE 184

Query: 225 DN-GIGSAWEPLWT 237
           DN    S WEPLWT
Sbjct: 185 DNTSQNSLWEPLWT 198

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435217|ref|XP_002282070.1| PREDICTED: LOB domain-containing protein 11 [Vitis vinifera] gi|297746208|emb|CBI16264.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/167 (72%), Positives = 133/167 (79%), Gaps = 5/167 (2%)

Query: 76  IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRAD 135
           +VLSPCAACKILRRRC +KCVLAPYFPPT+P KFT AHRVFGASNIIKFLQELPE QRAD
Sbjct: 36  VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEFQRAD 95

Query: 136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLITLIC 195
           AVSSMVYEA ARIRDPVYGCAGAIC LQKQ+ ELQAQLAK QAELV M+ QQ NL+T+IC
Sbjct: 96  AVSSMVYEAQARIRDPVYGCAGAICQLQKQLDELQAQLAKTQAELVNMQCQQANLVTMIC 155

Query: 196 MEMAQSQEQVLQQQQQQQ-----QQFMDTSCFLDDNGIGSAWEPLWT 237
           MEM  SQ      ++        Q +   S FLDD+ IG+ WEPLWT
Sbjct: 156 MEMEMSQSPQPSSEESLDSLISPQSYQSNSFFLDDSNIGATWEPLWT 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.502	0.512	0.731	1.2e-45
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.675	0.842	0.595	3.4e-45
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.375	0.461	0.696	1.1e-32
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.371	0.511	0.715	2.6e-31
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.375	0.397	0.651	3.8e-30
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.375	0.539	0.655	1e-29
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.371	0.473	0.647	1.6e-29
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.362	0.276	0.639	7.1e-29
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.371	0.553	0.647	1.9e-28
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.375	0.284	0.630	3.1e-28

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 87/119 (73%), Positives = 97/119 (81%)

Query:    76 IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRAD 135
             +VLSPCAACKILRRRC +KCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR D
Sbjct:    51 VVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 110

Query:   136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLI 194
             AV+SMVYEA AR+RDPVYGCAGAI HLQ+QVS             V M+ Q+ +L+ LI
Sbjct:   111 AVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 169

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 97/163 (59%), Positives = 110/163 (67%)

Query:    76 IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRAD 135
             +VLSPCAACKILRRRC E+CVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR D
Sbjct:    29 VVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTD 88

Query:   136 AVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLIC 195
             AV+SMVYEA ARIRDPVYGCAGAI HLQ+QVS             V M+ Q+ NL+ LI 
Sbjct:    89 AVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIY 148

Query:   196 -MEMAXXXXXXXXXXXXXXXXFMDTSCFLDDNGIGSAWEPLWT 237
              M+                  F++     + N     W+PLWT
Sbjct:   149 NMDQQQKQEQDNMSFESNDLGFLEDKS--NTNSSMLWWDPLWT 189

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 62/89 (69%), Positives = 76/89 (85%)

Query:    79 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
             SPCA+CK+LRRRC + C+ APYFPP +P+KF I H+VFGASN+ K LQELP  QRADAV+
Sbjct:     7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query:   139 SMVYEASARIRDPVYGCAGAICHLQKQVS 167
             S+V+EA+AR+RDPVYGC GAI +LQ QVS
Sbjct:    67 SLVFEANARVRDPVYGCVGAISYLQNQVS 95

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 63/88 (71%), Positives = 71/88 (80%)

Query:    79 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
             SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVS
Sbjct:    12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query:   139 SMVYEASARIRDPVYGCAGAICHLQKQV 166
             SMVYEA+AR+RDPVYGC GAI  LQ+Q+
Sbjct:    72 SMVYEANARVRDPVYGCVGAISSLQQQI 99

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query:    78 LSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAV 137
             ++PCAACK+LRRRC ++C  +PYF P EP+KF   H+VFGASN+ K L E+PESQRADA 
Sbjct:    43 ITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAA 102

Query:   138 SSMVYEASARIRDPVYGCAGAICHLQKQV 166
             +S+VYEA+ R+RDPVYGC GAI  LQ+QV
Sbjct:   103 NSLVYEANVRLRDPVYGCMGAISALQQQV 131

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 59/90 (65%), Positives = 72/90 (80%)

Query:    78 LSPCAACKILRRRCV-EKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADA 136
             +SPCA CK+LRR+CV + CV APYFP  EPYKF I H++FGASN+ K LQEL E+ R+DA
Sbjct:    12 VSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDA 71

Query:   137 VSSMVYEASARIRDPVYGCAGAICHLQKQV 166
             V SMVYEA+ARI+DPVYGC G I  L +Q+
Sbjct:    72 VDSMVYEANARIQDPVYGCVGTISSLHRQL 101

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 57/88 (64%), Positives = 69/88 (78%)

Query:    79 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
             SPCAACK LRR+C+  C+ APYFPP EP+KF   H++FGASN+ K L EL   QR DAV+
Sbjct:    10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query:   139 SMVYEASARIRDPVYGCAGAICHLQKQV 166
             S+ YEA AR+RDPVYGC GAI +LQ+QV
Sbjct:    70 SLAYEAEARVRDPVYGCVGAISYLQRQV 97

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query:    79 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
             +PCAACK+LRR+C ++CV APYFPPT P KF   HRVFGASN+ K L +LP  QR D V+
Sbjct:     4 TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVN 63

Query:   139 SMVYEASARIRDPVYGCAGAICHLQK 164
             S+ YEA ARIRDP+YGC G I  LQ+
Sbjct:    64 SLFYEAEARIRDPIYGCVGLISFLQQ 89

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 57/88 (64%), Positives = 66/88 (75%)

Query:    79 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
             SPCAACK LRR+C   CV APYFPP EP KF   HR+FGASN+ K L E+   QR DAV+
Sbjct:    38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVN 97

Query:   139 SMVYEASARIRDPVYGCAGAICHLQKQV 166
             S+ YEA AR++DPVYGC GAI  LQ+QV
Sbjct:    98 SLAYEAEARLKDPVYGCVGAISVLQRQV 125

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/92 (63%), Positives = 69/92 (75%)

Query:    79 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVS 138
             SPCAACK LRR+C ++CV APYFPP +P KF   H+VFGASN+ K L EL  +QR DAV+
Sbjct:     6 SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVN 65

Query:   139 SMVYEASARIRDPVYGCAGAICHLQ---KQVS 167
             S+ YEA AR+RDPVYGC G I  LQ   KQV+
Sbjct:    66 SLFYEAEARLRDPVYGCVGLISILQHRLKQVN 97

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQR0	LBD1_ARATH	No assigned EC number	0.6764	0.6455	0.8052	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VIII.948.1 hypothetical protein (178 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	7e-51
pfam03938	157	pfam03938, OmpH, Outer membrane protein (OmpH-like	0.002
pfam11068	131	pfam11068, DUF2869, Protein of unknown function (D	0.004

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  160 bits (408), Expect = 7e-51
 Identities = 59/101 (58%), Positives = 75/101 (74%)

Query: 80  PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSS 139
           PCAACK LRR+C   CVLAPYFP  +P +F   H++FGASN+ K L+ LP  QR DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 140 MVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAEL 180
           ++YEA AR RDPVYGC G I  LQ+Q+ +LQA+LA  +A+L
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 161 HLQKQVSELQAQLAKAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQFMDTS 220
            L+K+  +LQA+L K + EL   E + +     +  E  ++++Q LQQ+QQ+ QQ    +
Sbjct: 39  QLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAA 98

This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery. Length = 157

>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869)

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 18/51 (35%), Positives = 30/51 (58%)

Query: 168 ELQAQLAKAQAELVTMESQQRNLITLICMEMAQSQEQVLQQQQQQQQQFMD 218
           ELQ QL + + EL  +E Q +  I  I  + AQ  EQ+ QQ +Q++ + ++
Sbjct: 24  ELQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQQIEQIQQQVEQERAKRLE 74

This bacterial family of proteins has no known function. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	83.76

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=1.1e-49  Score=313.77  Aligned_cols=101  Identities=63%  Similarity=1.102  Sum_probs=99.5

Q ss_pred             CChhhHHhhhcCccCCccCcCCCCCCCcchhHhhhhhchhhHHHHhhcCCccchHHHHHHHHHHhhccccCCCcccHHHH
Q 026556           80 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAI  159 (237)
Q Consensus        80 ~CAACK~lRRrC~~dCilAPYFP~~~~~~F~~vhKVFG~SNV~KmLq~lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI  159 (237)
                      +|||||||||||+++|+||||||++++++|.+||||||++||+|||+++|+++|+++|+||+|||++|++||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 026556          160 CHLQKQVSELQAQLAKAQAEL  180 (237)
Q Consensus       160 ~~Lq~qI~~LqaeLa~aqaeL  180 (237)
                      +.|++||+++++||+.+++||
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.76  E-value=3.3  Score=37.93  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=56.3

Q ss_pred             hHHHHhhcCCccchHHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 026556          120 NIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQ  186 (237)
Q Consensus       120 NV~KmLq~lp~~qR~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q  186 (237)
                      |+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|..++.+|+.++.+|+.++.-
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~   77 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG   77 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3444566677779999999999999999999999999999988888888888888888888876553

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1hcia4	114	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	83.22

>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.22  E-value=0.98  Score=31.52  Aligned_cols=59  Identities=12%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhhccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 026556          134 ADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSELQAQLAKAQAELVTMESQQRNLIT  192 (237)
Q Consensus       134 ~dAv~SLvYEA~aR~rDPVyGCvGiI~~Lq~qI~~LqaeLa~aqaeL~~~q~q~a~l~~  192 (237)
                      .+-+.+-+.|+..-+.+|+||-.+.|..+.++...++.+|...+..+..+......|+.
T Consensus        14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~   72 (114)
T d1hcia4          14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQE   72 (114)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778888888899999999999999999999999999999999888777666665