Citrus Sinensis ID: 026563

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
MRKSFKDSLKALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccccccHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEccccHHHHHHHccHHHHHHHHccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEcccccccccHcHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHccccccccHHHHHHccEEccccccEEccccccHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEccccc
Coil and Loop (DISEMBL)
MRKSFKDSLKALEADiqaseypreydGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAkykkkgrmdkgklseidiEREEECGICLEIcckivlpdcnhsmcmrcyrnwrarsqscpfcrdslrrvnsgdlwiytseddiVDLASISRENLKRLFMYIdklpfitpnptlvsydpryr
Flexible Loop (DISEMBL)
MRKSFKDSLKALEadiqaseypreYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRgitdvedkkqkeicdakykkkgrmdkgklseidiereeECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLrrvnsgdlwiytseddivdLASISRENLKRLFmyidklpfitpnptlvsydpryr
Low Complexity Region (SEG)
MRKSFKDSLKALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCrlagalgllriliYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAkykkkgrmdkgkLSEIDiereeecgicleicckiVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Disordered region (IsUnstruct)
********************YPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVE******IC*****************IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLV*******
Disordered Region (DISOPRED)
*********KALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQR*********************************IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRY*
Disordered Region (DISEMBL)
MRKSFKDSLKALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKY**********LSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Disordered Region (DISPRO)
***SFKDSLKALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKG*****KLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKSFKDSLKALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q5ZM74	230	RING finger protein 141 O	yes	no	0.248	0.256	0.4	1e-06
Q32L15	230	RING finger protein 141 O	yes	no	0.257	0.265	0.358	6e-06
Q2XNS1	231	RING finger protein 141 O	yes	no	0.257	0.264	0.358	6e-06
Q6IV57	230	RING finger protein 141 O	yes	no	0.257	0.265	0.358	7e-06
Q99MB7	230	RING finger protein 141 O	yes	no	0.257	0.265	0.358	7e-06
Q5R7K8	230	RING finger protein 141 O	yes	no	0.257	0.265	0.358	7e-06
Q8WVD5	230	RING finger protein 141 O	yes	no	0.257	0.265	0.358	7e-06
Q6IV56	222	RING finger protein 141 O	no	no	0.270	0.288	0.343	2e-05
Q803C1	485	E3 ubiquitin-protein liga	yes	no	0.392	0.191	0.32	6e-05
Q13064	507	Probable E3 ubiquitin-pro	no	no	0.219	0.102	0.352	9e-05

>sp|Q5ZM74|RN141_CHICK RING finger protein 141 OS=Gallus gallus GN=RNF141 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 194
           E+EC IC++    ++LP C HS C +C   W  R +SCP CR  +    +GD W+ +   
Sbjct: 152 EDECCICMDGRVDLILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAP 208

Query: 195 SEDDI 199
           +EDDI
Sbjct: 209 TEDDI 213

Gallus gallus (taxid: 9031)

>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 194
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 195 SEDDIVD 201
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Bos taurus (taxid: 9913)

>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 194
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 153 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 209

Query: 195 SEDDIVD 201
           +EDD+ +
Sbjct: 210 TEDDMAN 216

May be involved in spermatogenesis.

Canis familiaris (taxid: 9615)

>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 194
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 195 SEDDIVD 201
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 194
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 195 SEDDIVD 201
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Mus musculus (taxid: 10090)

>sp|Q5R7K8|RN141_PONAB RING finger protein 141 OS=Pongo abelii GN=RNF141 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 194
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 195 SEDDIVD 201
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Pongo abelii (taxid: 9601)

>sp|Q8WVD5|RN141_HUMAN RING finger protein 141 OS=Homo sapiens GN=RNF141 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT--- 194
           EEEC IC++    ++LP C HS C +C   W  R ++CP CR  L+   + + W+ +   
Sbjct: 152 EEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICR--LQMTGANESWVVSDAP 208

Query: 195 SEDDIVD 201
           +EDD+ +
Sbjct: 209 TEDDMAN 215

May be involved in spermatogenesis.

Homo sapiens (taxid: 9606)

>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSED 197
           EEEC IC++    ++LP C HS C +C   W  +S++CP CR  +   N  + W+ +   
Sbjct: 144 EEECCICMDGKADLILP-CAHSFCQKCIDKWSGQSRNCPVCRIQVTAAN--ESWVMSDAP 200

Query: 198 DIVDLAS 204
              D+A 
Sbjct: 201 TGEDVAG 207

Danio rerio (taxid: 7955)

>sp|Q803C1|RNF8_DANRE E3 ubiquitin-protein ligase RNF8 OS=Danio rerio GN=rnf8 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 7/100 (7%)

Query: 84  SIKEFYGVIFPSLLQLQRGITDVEDKKQKEI-CDAKYKKKGRMDK----GKLSEIDIERE 138
           ++KE   VI   L    +G  +V   K KE+    + K+K +  K     +++E+ +E E
Sbjct: 332 ALKEHRKVI-EELKHAWQGFKEVLQAKDKELEVTKEEKEKAKAQKEEVVTQMTEV-LESE 389

Query: 139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFC 178
            +C IC E+  + V  +C HS C  C   WR R   CP C
Sbjct: 390 LQCSICSELFIEAVTLNCAHSFCQHCISEWRNRKDKCPMC 429

E3 ubiquitin-protein ligase required for assembly of repair proteins to sites of DNA damage. Catalyzes the 'Lys-63'-linked ubiquitination of histone H2A and H2AX. Following DNA double-strand breaks (DSBs), it is recruited to the sites of damage by ATM-phosphorylated mdc1, mediates the ubiquitination of histones H2A and H2AX, thereby promoting the formation of tp53bp1 and brca1 ionizing radiation-induced foci (IRIF). Promotes the formation of 'Lys-63'-linked polyubiquitin chains and functions with the specific ubiquitin-conjugating ube2n/ubc13. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Ubiquitination of histone H2A requires ube2n but not mms2 (ube2v2). May also ubiquitinate histone H2B.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q13064|MKRN3_HUMAN Probable E3 ubiquitin-protein ligase makorin-3 OS=Homo sapiens GN=MKRN3 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 16/68 (23%)

Query: 141 CGICLEICCK---------IVLPDCNHSMCMRCYRNWRARSQ-------SCPFCRDSLRR 184
           CGIC+E+  +          +L +CNHS C+RC R WR+  Q       SCP CR +   
Sbjct: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSEL 370

Query: 185 VNSGDLWI 192
           V   + W+
Sbjct: 371 VIPSEFWV 378

E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
224140411	241	predicted protein [Populus trichocarpa]	0.995	0.979	0.805	1e-110
225440680	242	PREDICTED: uncharacterized protein LOC10	1.0	0.979	0.785	1e-109
224090988	242	predicted protein [Populus trichocarpa]	0.995	0.975	0.793	1e-108
255574379	278	protein binding protein, putative [Ricin	0.995	0.848	0.785	1e-108
449483479	242	PREDICTED: uncharacterized LOC101207541	0.978	0.958	0.755	1e-103
449467505	242	PREDICTED: uncharacterized protein LOC10	0.978	0.958	0.751	1e-103
312282839	242	unnamed protein product [Thellungiella h	0.987	0.966	0.753	1e-102
15241003	242	RING/U-box domain-containing protein [Ar	0.987	0.966	0.748	1e-100
297810245	242	zinc finger family protein [Arabidopsis	0.987	0.966	0.732	5e-99
225440678	230	PREDICTED: uncharacterized protein LOC10	0.949	0.978	0.735	7e-99

>gi|224140411|ref|XP_002323576.1| predicted protein [Populus trichocarpa] gi|222868206|gb|EEF05337.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/242 (80%), Positives = 215/242 (88%), Gaps = 6/242 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADI      AS+YPREYDGACLQMRLSYS AA+ FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIHFANTLASDYPREYDGACLQMRLSYSPAANFFLFLVQWTDCHLA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYGVIFPSLLQL+RGITDVED+KQKEIC
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIYERKASIREFYGVIFPSLLQLERGITDVEDRKQKEIC 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
            AKYKKK  MDKGKLSEID+EREEECGIC+EI  ++VLP CNH+MCM+CYR+WR RSQSC
Sbjct: 121 -AKYKKKDEMDKGKLSEIDLEREEECGICMEINSRVVLPKCNHAMCMKCYRDWRTRSQSC 179

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 235
           PFCRDSL+RVNSGDLWIYT+ ++I+DL+SI+R+NLKRLFMYIDKLP I P P  VSYDPR
Sbjct: 180 PFCRDSLKRVNSGDLWIYTNNNEIIDLSSITRQNLKRLFMYIDKLPLIVPEPIFVSYDPR 239

Query: 236 YR 237
           YR
Sbjct: 240 YR 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440680|ref|XP_002280008.1| PREDICTED: uncharacterized protein LOC100261401 isoform 1 [Vitis vinifera] gi|297740213|emb|CBI30395.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/242 (78%), Positives = 211/242 (87%), Gaps = 5/242 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     AS Y REYDGAC QMRLSYS AAH FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQYANTLASGYQREYDGACFQMRLSYSPAAHLFLFLVQWTDCHLA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYGVIFPSLLQLQRGITDVE++KQ+EIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSVHERKASIREFYGVIFPSLLQLQRGITDVEERKQREIC 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
            AKYK+K  MDKGKLSE+D+EREEECGIC+EI  K+VLP+CNHS+CM+CYRNWR RSQSC
Sbjct: 121 AAKYKRKDDMDKGKLSEVDVEREEECGICMEISSKVVLPNCNHSLCMKCYRNWRPRSQSC 180

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 235
           PFCRDSL+RV+SGDLWIY +  +I DL+SISRENLKRLFM+IDKLP I P+P  +SYDP 
Sbjct: 181 PFCRDSLKRVSSGDLWIYMNSHEIDDLSSISRENLKRLFMFIDKLPLIVPDPMFMSYDPP 240

Query: 236 YR 237
           +R
Sbjct: 241 FR 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090988|ref|XP_002309135.1| predicted protein [Populus trichocarpa] gi|222855111|gb|EEE92658.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/242 (79%), Positives = 214/242 (88%), Gaps = 6/242 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     AS YPREYDGACLQMRLSYS AAH FLFLVQW    LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASVYPREYDGACLQMRLSYSPAAHLFLFLVQWTGFHLA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM   ERKAS++EFYGVIFPSLLQLQRGITDVED+KQKEIC
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIHERKASVREFYGVIFPSLLQLQRGITDVEDRKQKEIC 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
            AKYKKK  MDKGK+SEID+EREEECGIC+EI  ++VLP CNH+MC++CYR+WRARSQSC
Sbjct: 121 -AKYKKKDEMDKGKISEIDLEREEECGICMEINSRVVLPKCNHAMCLKCYRDWRARSQSC 179

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 235
           PFCRDSL+RVNSGDLWIYTS ++I+DL+SI+R+NLKRLFMYID+LP I P+P LV Y+P 
Sbjct: 180 PFCRDSLKRVNSGDLWIYTSRNEIIDLSSITRQNLKRLFMYIDRLPLIVPDPVLVPYEPC 239

Query: 236 YR 237
           YR
Sbjct: 240 YR 241

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574379|ref|XP_002528103.1| protein binding protein, putative [Ricinus communis] gi|223532492|gb|EEF34282.1| protein binding protein, putative [Ricinus communis]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 190/242 (78%), Positives = 211/242 (87%), Gaps = 6/242 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     AS+YPREYDGACLQMRLSYS AA  FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASDYPREYDGACLQMRLSYSPAAQFFLFLVQWTDCHLA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYGVIFPSLLQLQRGI D++++KQKEIC
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSVHERKASIREFYGVIFPSLLQLQRGINDLDERKQKEIC 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
            ++YKKK  MD+GKLSEID+EREEECGICLEI  K+VLP CNHS+CMRCYRNWR RSQSC
Sbjct: 121 -SRYKKKDEMDRGKLSEIDLEREEECGICLEINTKVVLPKCNHSLCMRCYRNWRVRSQSC 179

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 235
           PFCR+SL+RVNSGDLWIYTS+++IV L+SI+RENL+RLFMYIDKLP I P P   SYD R
Sbjct: 180 PFCRNSLKRVNSGDLWIYTSKNEIVALSSITRENLERLFMYIDKLPLIVPGPKFASYDSR 239

Query: 236 YR 237
           + 
Sbjct: 240 FH 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483479|ref|XP_004156604.1| PREDICTED: uncharacterized LOC101207541 [Cucumis sativus]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/237 (75%), Positives = 209/237 (88%), Gaps = 5/237 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     AS+YP+EYDGACLQMRLSYS AA  FLF VQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASDYPKEYDGACLQMRLSYSPAAQFFLFFVQWTDCHLA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM  +ERKAS+KEFYGVIFPSL+QLQ+GITD+E++KQ+E+ 
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIQERKASLKEFYGVIFPSLVQLQKGITDIEERKQREVY 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
            AK+K+  R++KGK+SEID+EREEECGIC+E+  K+VLP+CNHSMCM+CYR+WR RSQSC
Sbjct: 121 AAKFKRTDRLNKGKISEIDLEREEECGICMELNNKVVLPNCNHSMCMKCYRSWRTRSQSC 180

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSY 232
           PFCRDSL+RVNSGDLWI TS  +IVDL+ ISRENLKRLFM+I+KLP I P+P L+SY
Sbjct: 181 PFCRDSLKRVNSGDLWICTSSSEIVDLSFISRENLKRLFMFINKLPLIVPDPKLISY 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467505|ref|XP_004151463.1| PREDICTED: uncharacterized protein LOC101207541 [Cucumis sativus]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/237 (75%), Positives = 209/237 (88%), Gaps = 5/237 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     AS+YP+EYDGACLQMRLSYS AA  FLF VQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASDYPKEYDGACLQMRLSYSPAAQFFLFFVQWTDCHLA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM  +ERKAS+KEFYGVIFPSL+QLQ+GITD+E++KQ+E+ 
Sbjct: 61  GALGLLRILIYKAYEDGKTTMSIQERKASLKEFYGVIFPSLVQLQKGITDIEERKQREVY 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
            AK+K+  R++KGK+SEID+EREEECGIC+E+  K+VLP+CNHSMCM+CYR+WR RSQSC
Sbjct: 121 AAKFKRTDRLNKGKISEIDLEREEECGICMELNNKVVLPNCNHSMCMKCYRSWRTRSQSC 180

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSY 232
           PFCRDSL+RVNSGDLWI TS  +IVDL+ ISR+NLKRLFM+I+KLP I P+P L+SY
Sbjct: 181 PFCRDSLKRVNSGDLWICTSSSEIVDLSFISRDNLKRLFMFINKLPLIVPDPKLISY 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282839|dbj|BAJ34285.1| unnamed protein product [Thellungiella halophila]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/239 (75%), Positives = 201/239 (84%), Gaps = 5/239 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     ASEYP EYDG C+QMRLSYS AAH FLFL+QW DC  A
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASEYPEEYDGGCVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM   ERKASIKEFY V+FPSLLQL  GITDVE++KQKEIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSLHERKASIKEFYDVLFPSLLQLHGGITDVEERKQKEIC 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
           D +Y KK + +KGK+SEID+EREEECGICLE+  K+VLP CNHSMC+ CYRNWRARSQSC
Sbjct: 121 DKRYLKKDKTEKGKMSEIDLEREEECGICLEVRNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 234
           PFCR SL+RVNSGDLW+YTS  +IV+L +I +ENLKRL MYIDKLP +  +PTLV Y P
Sbjct: 181 PFCRGSLKRVNSGDLWLYTSIKEIVELPAIYKENLKRLLMYIDKLPLVATDPTLVPYAP 239

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241003|ref|NP_195772.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|7327811|emb|CAB82268.1| putative protein [Arabidopsis thaliana] gi|15292803|gb|AAK92770.1| unknown protein [Arabidopsis thaliana] gi|20258865|gb|AAM14104.1| unknown protein [Arabidopsis thaliana] gi|66865962|gb|AAY57615.1| RING finger family protein [Arabidopsis thaliana] gi|332002973|gb|AED90356.1| RING/U-box domain-containing protein [Arabidopsis thaliana]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/239 (74%), Positives = 198/239 (82%), Gaps = 5/239 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     ASEYP EYDG  +QMRLSYS AAH FLFL+QW DC  A
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM   ERK SI+EFY V+FPSLLQL  GITDVE++KQKEIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEIC 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
           D +Y+KK R DKGK+SEID+EREEECGICLEI  K+VLP CNHSMC+ CYRNWRARSQSC
Sbjct: 121 DKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 234
           PFCR SL+RVNSGDLWIYT   +I DL +I +ENLKRL +YIDKLP +T +P LV Y P
Sbjct: 181 PFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVPYAP 239

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810245|ref|XP_002873006.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297318843|gb|EFH49265.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 175/239 (73%), Positives = 197/239 (82%), Gaps = 5/239 (2%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     ASEYP EYDG  +QMRLSYS AAH FLFL+QW DC  A
Sbjct: 1   MRKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           G LGLLRILIYKAY DGKTTM   ERKASI++FY V+FPSLLQL  GITD+E++KQKEIC
Sbjct: 61  GTLGLLRILIYKAYVDGKTTMSLHERKASIRDFYDVLFPSLLQLHGGITDLEERKQKEIC 120

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
           D +Y+KK R +KGK+SEID+EREEECGICLEI  K+VLP CNHSMC+ CYRNWRARSQSC
Sbjct: 121 DKRYRKKDRTEKGKMSEIDLEREEECGICLEIQNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 234
           PFCR SL+RVNSGDLWIYTS  +I DL +I +ENLKRL +YIDKLP +T +  L  Y P
Sbjct: 181 PFCRGSLKRVNSGDLWIYTSSAEIADLPAIYKENLKRLLIYIDKLPLVTSDSNLAPYAP 239

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440678|ref|XP_002280036.1| PREDICTED: uncharacterized protein LOC100261401 isoform 2 [Vitis vinifera]

 Score =  365 bits (938), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 178/242 (73%), Positives = 199/242 (82%), Gaps = 17/242 (7%)

Query: 1   MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLA 55
           MRKSFKDSLKALEADIQ     AS Y REYDGAC QMRLSYS AAH FLFLVQW DC LA
Sbjct: 1   MRKSFKDSLKALEADIQYANTLASGYQREYDGACFQMRLSYSPAAHLFLFLVQWTDCHLA 60

Query: 56  GALGLLRILIYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
           GALGLLRILIYKAY DGKTTM   ERKASI+EFYG            ITDVE++KQ+EIC
Sbjct: 61  GALGLLRILIYKAYVDGKTTMSVHERKASIREFYG------------ITDVEERKQREIC 108

Query: 116 DAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSC 175
            AKYK+K  MDKGKLSE+D+EREEECGIC+EI  K+VLP+CNHS+CM+CYRNWR RSQSC
Sbjct: 109 AAKYKRKDDMDKGKLSEVDVEREEECGICMEISSKVVLPNCNHSLCMKCYRNWRPRSQSC 168

Query: 176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDPR 235
           PFCRDSL+RV+SGDLWIY +  +I DL+SISRENLKRLFM+IDKLP I P+P  +SYDP 
Sbjct: 169 PFCRDSLKRVSSGDLWIYMNSHEIDDLSSISRENLKRLFMFIDKLPLIVPDPMFMSYDPP 228

Query: 236 YR 237
           +R
Sbjct: 229 FR 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
TAIR|locus:2149750	242	AIRP2 "ABA Insensitive RING Pr	0.987	0.966	0.615	2.8e-73
TAIR|locus:505006703	242	AT5G58787 "AT5G58787" [Arabido	0.957	0.938	0.544	1.4e-62
TAIR|locus:505006120	260	AT1G13195 [Arabidopsis thalian	0.341	0.311	0.543	3.2e-39
TAIR|locus:2024026	251	AT1G24440 [Arabidopsis thalian	0.978	0.924	0.369	4.3e-38
UNIPROTKB|Q5ZM74	230	RNF141 "RING finger protein 14	0.189	0.195	0.411	0.00024

TAIR|locus:2149750 AIRP2 "ABA Insensitive RING Protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 147/239 (61%), Positives = 162/239 (67%)

Query:     1 MRKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCXXX 55
             MRKSFKDSLKALEADIQ     ASEYP EYDG  +QMRLSYS AAH FLFL+QW DC   
Sbjct:     1 MRKSFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTDCHFA 60

Query:    56 XXXXXXXXXXYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEIC 115
                       YKAY DGKTTM   ERK SI+EFY V+FPSLLQL  GITDVE++KQKEIC
Sbjct:    61 GALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEIC 120

Query:   116 DAXXXXXXXXXXXXLSEIDXXXXXXXXXXXXXXXXXVLPDCNHSMCMRCYRNWRARSQSC 175
             D             +SEID                 VLP CNHSMC+ CYRNWRARSQSC
Sbjct:   121 DKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQSC 180

Query:   176 PFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSYDP 234
             PFCR SL+RVNSGDLWIYT   +I DL +I +ENLKRL +YIDKLP +T +P LV Y P
Sbjct:   181 PFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLPLVTSDPNLVPYAP 239

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:505006703 AT5G58787 "AT5G58787" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 129/237 (54%), Positives = 155/237 (65%)

Query:     4 SFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCXXXXXX 58
             SFKDSLKALEADIQ     A +YPRE DGA +QMRLSYS  A  FLFLVQW DC      
Sbjct:     5 SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTDCKLAGFL 64

Query:    59 XXXXXXXYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAX 118
                    Y  YADGKTTM   ERKASI+EF  VI PSL QLQRG+TD++D KQKE+C   
Sbjct:    65 GLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQKEVCKMR 124

Query:   119 XXXXXXXXXXXLSEIDXXXXXXXXXXXXXXXXXVLPDCNHSMCMRCYRNWRARSQSCPFC 178
                        +SEI+                 VLP+C HS+C++CYR+WR RSQSCPFC
Sbjct:   125 YRKKDESE---MSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQSCPFC 181

Query:   179 RDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVS--YD 233
             RDSL+RV+SGDLW++  ++D V+L +I+REN KRLFMYI+KLP + P+    S  YD
Sbjct:   182 RDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVYASSPYD 238

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:505006120 AT1G13195 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 44/81 (54%), Positives = 59/81 (72%)

Query:   152 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLK 211
             VLP+C HSMC++CYRNW  +SQSCPFCR S++RVNS DLW+   ++D+VD  + SRE+L 
Sbjct:   173 VLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLF 232

Query:   212 RLFMYIDKLPFITPNPTLVSY 232
             R ++YI+ LP   P    V Y
Sbjct:   233 RFYLYINSLPKDYPEALFVVY 253

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2024026 AT1G24440 [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 89/241 (36%), Positives = 129/241 (53%)

Query:     2 RKSFKDSLKALEADIQ-----ASEYPREYDGACLQMRLSYSQAAHTFLFLVQWID--CXX 54
             + S++DSLK LEADI+     A+E P    G  LQM+L  S  A  F+FL+QW+D  C  
Sbjct:     7 KSSYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSCLL 66

Query:    55 XXXXXXXXXXXYKAYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKK--QK 112
                        YK  ADG+       RKA+I+EFYGVI PSL +L     D+ D+     
Sbjct:    67 PRYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYP 126

Query:   113 EICDAXXXXXXXXXXXXLSEIDXXXXXXXXXXXXXXXXXVLPDCNHSMCMRCYRNWRARS 172
                              ++ ID                 VLP+C H+MC++CYRNW  +S
Sbjct:   127 NPKAITKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTKS 186

Query:   173 QSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMYIDKLPFITPNPTLVSY 232
             +SCPFCR S++RVNS DLW+ T ++D+VD  ++++E+L R +++I+ LP   P    + Y
Sbjct:   187 ESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEAAFLVY 246

Query:   233 D 233
             +
Sbjct:   247 N 247

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZM74 RNF141 "RING finger protein 141" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 0.00024, P = 0.00024
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query:   152 VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYT---SEDDI 199
             +LP C HS C +C   W  R +SCP CR  +    +GD W+ +   +EDDI
Sbjct:   166 ILP-CAHSFCQKCIDKWSDRHRSCPVCRRQV--TGAGDSWVVSDAPTEDDI 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      237       195   0.00078  111 3  11 22  0.40    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.58u 0.11s 14.69t   Elapsed:  00:00:01
  Total cpu time:  14.58u 0.11s 14.69t   Elapsed:  00:00:01
  Start:  Mon May 20 16:28:27 2013   End:  Mon May 20 16:28:28 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVI1059 hypothetical protein (242 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	237
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-07
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	1e-07
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	8e-07
smart00184	40	smart00184, RING, Ring finger	1e-05
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	6e-05
PHA02926	242	PHA02926, PHA02926, zinc finger-like protein; Prov	1e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	1e-04
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	5e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	8e-04
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	8e-04
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	0.002

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 140 ECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQ-SCPFCRDSL 182
           EC ICLE     +VL  C H  C  C   W    + +CP CR  +
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 103 ITDVEDKKQKEICDAKYKKKGRMDKGKLSEI-----------DIEREEECGICLEICCKI 151
           I  +  +K++++  A   KKG+  K  L  I           +  +++EC IC+E     
Sbjct: 128 INYIYMRKEEDMFYAIINKKGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDK 187

Query: 152 --------VLPDCNHSMCMRCYRNWRARSQSCPFCR 179
                   +L +CNH  C+ C   W+    +CP CR
Sbjct: 188 EIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 45.1 bits (107), Expect = 4e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 139 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
           +EC ICL+      ++V+  C H     C   W   S +CP CR
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 44.4 bits (105), Expect = 8e-07
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 138 EEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
           E EC ICL++    +VL  C H  C  C   +  +   CP CR
Sbjct: 2   ELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICR 44

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 141 CGICLEICCK-IVLPDCNHSMCMRCYRNW-RARSQSCPFC 178
           C ICLE   K  V+  C H+ C  C R W  + + +CP C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 13/55 (23%)

Query: 138 EEECGICL----EIC---------CKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
           ++ C IC       C         C +V  +C H+  + C   W     +CP CR
Sbjct: 19  DDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|165237 PHA02926, PHA02926, zinc finger-like protein; Provisional

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 15/72 (20%)

Query: 135 IEREEECGICLEICCKI---------VLPDCNHSMCMRCYRNW-RAR-----SQSCPFCR 179
           + +E+ECGIC E+             +L  CNH  C+ C   W R R     S +CP CR
Sbjct: 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICR 226

Query: 180 DSLRRVNSGDLW 191
              R +     +
Sbjct: 227 TRFRNITMSKFY 238

Length = 242

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 137 REEECGICLEICCKIVLPDCNH-SMCMRCYRNWRARSQSCPFCR 179
            ++ C ICLE    +V   C H  +C  C +  R   + CP CR
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLR-SKKKCPICR 43

Length = 49

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 16/64 (25%)

Query: 134 DIEREEECGIC-------LEIC------CKIVLPDCNHSMCMRCYRNWRARSQS---CPF 177
           D   ++ CGIC          C      C +V   C H+  M C   W A   S   CP 
Sbjct: 17  DTPSDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPM 76

Query: 178 CRDS 181
           CR +
Sbjct: 77  CRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 153 LPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182
           LP C H + + C +NW  R Q+CP CR  +
Sbjct: 316 LP-CGHILHLHCLKNWLERQQTCPICRRPV 344

Length = 491

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCR 179
           E    C IC           C H +C  C    RA    + CP CR
Sbjct: 59  EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCR 104

Length = 493

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 141 CGICLE--ICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFC 178
           C ICLE       +LP C H  C +C  +W  + + +CP C
Sbjct: 1   CPICLEEPKDPVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	99.69
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.46
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.28
PHA02929	238	N1R/p28-like protein; Provisional	99.26
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.24
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.21
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.2
PHA02926	242	zinc finger-like protein; Provisional	99.15
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.13
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.09
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.07
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.07
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.0
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.98
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.98
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.94
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.94
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.9
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.88
PF14634	44	zf-RING_5: zinc-RING finger domain	98.83
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.78
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.76
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.75
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.71
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.69
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.69
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.66
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.62
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.52
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.48
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.44
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.34
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.32
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.29
KOG1002	791	consensus Nucleotide excision repair protein RAD16	98.28
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.05
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.04
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.0
KOG2660	331	consensus Locus-specific chromosome binding protei	97.99
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.94
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.84
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.83
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.8
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.73
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
COG5152	259	Uncharacterized conserved protein, contains RING a	97.71
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.7
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.69
PHA03096	284	p28-like protein; Provisional	97.67
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.64
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.54
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.54
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.5
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.4
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.27
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	97.23
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.13
KOG1001	674	consensus Helicase-like transcription factor HLTF/	97.03
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	97.02
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	96.98
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.91
KOG4739	233	consensus Uncharacterized protein involved in syna	96.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.62
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.62
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.42
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.38
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	96.33
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.96
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.8
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	95.77
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.71
KOG3002	299	consensus Zn finger protein [General function pred	95.69
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.65
PF04641	260	Rtf2: Rtf2 RING-finger	95.61
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.31
KOG4445	368	consensus Uncharacterized conserved protein, conta	95.24
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	95.18
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.03
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.62
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.41
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.94
PHA02862	156	5L protein; Provisional	93.72
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	93.55
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.53
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	93.44
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	93.41
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	93.1
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	92.93
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.71
KOG0298	1394	consensus DEAD box-containing helicase-like transc	92.38
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	92.33
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.92
KOG1940	276	consensus Zn-finger protein [General function pred	91.87
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	91.8
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.66
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	89.85
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	89.38
KOG3039	303	consensus Uncharacterized conserved protein [Funct	89.21
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	87.48
KOG1815	444	consensus Predicted E3 ubiquitin ligase [Posttrans	86.4
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	86.4
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	85.64
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	84.82
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	84.65
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	83.37
KOG3899	381	consensus Uncharacterized conserved protein [Funct	81.04
KOG2113	394	consensus Predicted RNA binding protein, contains	80.23

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.2e-17  Score=150.45  Aligned_cols=214  Identities=29%  Similarity=0.427  Sum_probs=159.7

Q ss_pred             cccCCCCCCCceEEEeeecCCc-hhHHHHHHhhhhhHHHHHhhhhhheeEEEe-cCCccccccccc--cccHHHHHhhhh
Q 026563           18 ASEYPREYDGACLQMRLSYSQA-AHTFLFLVQWIDCRLAGALGLLRILIYKAY-ADGKTTMCTRER--KASIKEFYGVIF   93 (237)
Q Consensus        18 ~~~~~~~~~g~~~qm~ls~~~~-a~~~lfl~~~~~~sia~~l~l~~il~y~v~-~dg~~~~~~~~r--~~si~efy~~I~   93 (237)
                      ...+|+++.+.--+||+++++. .++..+++.|+++.-+. .|..+++++..+ .++..+++...+  ...+++++++.+
T Consensus        11 c~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~s~~~~~   89 (344)
T KOG1039|consen   11 CKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAS-TGLSQSLIWANAVADASATMSVSSRPVLTAIRASSSISE   89 (344)
T ss_pred             hhhcccccccccceeeeeccCchhhccccccccccccccc-cccchhhcccchhhccccccchhcccchhhhhhhhcccc
Confidence            5678999999999999999888 88999999999988776 777888888887 788888777665  678889998888


Q ss_pred             hh---------HHHhhhcCCChHHH----------HhHHHhHHHHhhhcccc--------cCCCccccCCCCCcceeecc
Q 026563           94 PS---------LLQLQRGITDVEDK----------KQKEICDAKYKKKGRMD--------KGKLSEIDIEREEECGICLE  146 (237)
Q Consensus        94 ps---------l~qL~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~C~IC~~  146 (237)
                      ++         +.+.+.+.......          .+...+...+...+...        -++........+..|+||++
T Consensus        90 ~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~s~~k~CGICme  169 (344)
T KOG1039|consen   90 PSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQKSSEKECGICME  169 (344)
T ss_pred             ccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCccccccceehhh
Confidence            87         22222222222111          01112222222222111        11122233356889999999


Q ss_pred             ccCcce--------ecCCCCcccHhHHHHhhc--c-----CCCCccccccccccCCCCccccCCcchhhhhhhhhHHHHH
Q 026563          147 ICCKIV--------LPDCNHSMCMRCYRNWRA--R-----SQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLK  211 (237)
Q Consensus       147 ~~~~~v--------~~~CgH~FC~~Ci~~w~~--~-----~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l~  211 (237)
                      ...+..        +++|.|.||.+||+.|..  +     +..||+||.+...+++...|+.+..++.....+..++...
T Consensus       170 ~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~~k~~li~e~~~~~s~  249 (344)
T KOG1039|consen  170 TINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKEEKQKLIEEYEAEMSA  249 (344)
T ss_pred             hccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecccccccHHHHHHHhhc
Confidence            887543        489999999999999984  4     6899999999999999999999999888888888888888


Q ss_pred             HHHHhhccCCCCCCCcceecc
Q 026563          212 RLFMYIDKLPFITPNPTLVSY  232 (237)
Q Consensus       212 ~l~~~i~~lp~~~p~~~~~~~  232 (237)
                      +...|+++.+...|..-...|
T Consensus       250 ~~c~yf~~~~g~cPf~s~~~y  270 (344)
T KOG1039|consen  250 KDCKYFSQGLGSCPFGSKCFY  270 (344)
T ss_pred             cchhhhcCCCCCCCCCCcccc
Confidence            889999999999998655554

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=2e-14  Score=124.93  Aligned_cols=167  Identities=18%  Similarity=0.243  Sum_probs=97.4

Q ss_pred             HHHHHHhhccccCCCCCCCceEEEeeecCCchhHHHHHHhhhhhHHHHHhhhhhheeEEEecCCccccccc---cccccH
Q 026563            9 LKALEADIQASEYPREYDGACLQMRLSYSQAAHTFLFLVQWIDCRLAGALGLLRILIYKAYADGKTTMCTR---ERKASI   85 (237)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~qm~ls~~~~a~~~lfl~~~~~~sia~~l~l~~il~y~v~~dg~~~~~~~---~r~~si   85 (237)
                      .|.|++++|.+...++..-..+|=+|.+--.+|..+|++.+..++|+..+.-++.+.-........+.+..   -...++
T Consensus       111 ~~~l~q~l~~~~~i~p~~~~~~l~~l~~v~~~h~~lFY~~g~~y~IskRltgI~yv~~~~~~~~~~~~~q~y~iLg~I~L  190 (293)
T KOG0317|consen  111 TKKLMQALQSSSEILPQARRNFLRGLFAVLRAHKALFYINGSFYSISKRLTGIRYVLARTLKGHEANASQPYKILGYILL  190 (293)
T ss_pred             HHHHHHhhccCcccccHHHHHHhhhHHHHHHHhhheEEecCchHHHHHhhccceEEEEecccccccccccceeeechhhH
Confidence            47788888864444445555566688877788899999999999999987777776543211111110000   011122


Q ss_pred             HHHHhhhhhhHHHhhhcCCChHHHH-hHHHhHHHHhhhccccc--CCCc-cccCCCCCcceeeccccCcceecCCCCccc
Q 026563           86 KEFYGVIFPSLLQLQRGITDVEDKK-QKEICDAKYKKKGRMDK--GKLS-EIDIEREEECGICLEICCKIVLPDCNHSMC  161 (237)
Q Consensus        86 ~efy~~I~psl~qL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~C~IC~~~~~~~v~~~CgH~FC  161 (237)
                      .|.-..+-+++.      ....+.+ ......+  .++....+  .+.. ....+....|.+|++....|..++|||.||
T Consensus       191 ~ql~~slg~r~~------~s~~q~~~s~~e~~~--e~~~~~~~~~~s~~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFC  262 (293)
T KOG0317|consen  191 IQLLLSLGSRLY------ASFLQHKRSSTESIE--ESKLNHSKLEDSNSLSSIPEATRKCSLCLENRSNPSATPCGHIFC  262 (293)
T ss_pred             HHHHHhhhhHHH------HHHHhcccccccccc--cccccccchhhccCCccCCCCCCceEEEecCCCCCCcCcCcchHH
Confidence            221111111100      0111000 0000000  00000000  1111 222345589999999999999999999999


Q ss_pred             HhHHHHhhccCCCCcccccccc
Q 026563          162 MRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       162 ~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      +.||.+|......||+||..++
T Consensus       263 WsCI~~w~~ek~eCPlCR~~~~  284 (293)
T KOG0317|consen  263 WSCILEWCSEKAECPLCREKFQ  284 (293)
T ss_pred             HHHHHHHHccccCCCcccccCC
Confidence            9999999999999999999887

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.28  E-value=2.1e-12  Score=107.34  Aligned_cols=58  Identities=24%  Similarity=0.672  Sum_probs=47.9

Q ss_pred             ccccCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc----------------cCCCCccccccccccCCC
Q 026563          131 SEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----------------RSQSCPFCRDSLRRVNSG  188 (237)
Q Consensus       131 ~~~~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----------------~~~~CP~CR~~~~~~~~~  188 (237)
                      ...+...+.+|+||++.+.++++++|||.||..||.+|+.                ....||.||..+......
T Consensus        11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv   84 (193)
T PLN03208         11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV   84 (193)
T ss_pred             eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence            3345567799999999999999999999999999999974                236899999999754433

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.26  E-value=2.6e-12  Score=110.77  Aligned_cols=56  Identities=30%  Similarity=0.905  Sum_probs=47.2

Q ss_pred             CCCCcceeeccccCc--------ceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCcc
Q 026563          136 EREEECGICLEICCK--------IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW  191 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~--------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~  191 (237)
                      ..+.+|+||++.+.+        +++++|||.||..||.+|+..+.+||+||.++..+.....|
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~  235 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKSRFF  235 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence            456899999998764        36689999999999999999999999999999866655544

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.24  E-value=1.8e-12  Score=83.35  Aligned_cols=41  Identities=44%  Similarity=0.996  Sum_probs=35.5

Q ss_pred             CcceeeccccC---cceecCCCCcccHhHHHHhhccCCCCcccc
Q 026563          139 EECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCR  179 (237)
Q Consensus       139 ~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR  179 (237)
                      .+|+||++.+.   .++.++|||.||.+|+.+|+.++.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999985   357788999999999999999999999997

...

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.21  E-value=5.5e-12  Score=83.30  Aligned_cols=47  Identities=36%  Similarity=0.863  Sum_probs=42.3

Q ss_pred             CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +..|.||++...++++.+|||. ||..|+.+|......||+||++++.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            4689999999999999999999 9999999999999999999999874

...

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.20  E-value=7.4e-12  Score=79.83  Aligned_cols=38  Identities=37%  Similarity=0.837  Sum_probs=30.2

Q ss_pred             ceeeccccCcceecCCCCcccHhHHHHhhccC----CCCccc
Q 026563          141 CGICLEICCKIVLPDCNHSMCMRCYRNWRARS----QSCPFC  178 (237)
Q Consensus       141 C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~----~~CP~C  178 (237)
                      |+||++.+.+|+.++|||+||..||.+|+...    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999999999988732    579987

>PHA02926 zinc finger-like protein; Provisional

Probab=99.15  E-value=1.5e-11  Score=103.66  Aligned_cols=56  Identities=36%  Similarity=0.986  Sum_probs=45.7

Q ss_pred             CCCCcceeeccccCc---------ceecCCCCcccHhHHHHhhcc------CCCCccccccccccCCCCcc
Q 026563          136 EREEECGICLEICCK---------IVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSGDLW  191 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~---------~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~~~~~~~~~~~  191 (237)
                      +.+.+|+||++...+         +++++|+|.||..||..|...      ..+||+||..+..+.++..+
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~  238 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY  238 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence            456899999997532         578899999999999999973      35699999999877776653

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.13  E-value=2.1e-11  Score=76.39  Aligned_cols=38  Identities=34%  Similarity=0.951  Sum_probs=34.1

Q ss_pred             ceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCccc
Q 026563          141 CGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFC  178 (237)
Q Consensus       141 C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~C  178 (237)
                      |+||++.+.++ +.++|||.||.+|+.+|++....||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999 679999999999999999999999998

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=4.3e-11  Score=101.41  Aligned_cols=52  Identities=27%  Similarity=0.701  Sum_probs=46.1

Q ss_pred             CCCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCccccccccccCC
Q 026563          136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRVNS  187 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~~~~  187 (237)
                      ....+|.||++.-.+||++.|||.||+-||.+|+.   .++.||+|+..++....
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v   99 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV   99 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence            45689999999999999999999999999999998   67899999998874433

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.07  E-value=8.8e-11  Score=108.03  Aligned_cols=74  Identities=26%  Similarity=0.588  Sum_probs=56.4

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCccccCCcchhhhhhhhhHHHH
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENL  210 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l  210 (237)
                      .++....|+||.+.+..|++++|||.||..|+..|+.....||.||..+.......++.   ..++++.....+..+
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~---L~~iVe~~~~~R~~L   95 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWL---VSEIVESFKNLRPSL   95 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchH---HHHHHHHHHHhhHHH
Confidence            34567899999999999999999999999999999998889999999987544444433   335555443333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00504 Ubox Modified RING finger domain

Probab=99.07  E-value=9.5e-11  Score=80.50  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=43.4

Q ss_pred             CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +..|+||.+.+.+|+.++|||.||+.||.+|+.....||.|+.+++.
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            36799999999999999999999999999999988999999998853

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.00  E-value=1.8e-10  Score=82.19  Aligned_cols=42  Identities=33%  Similarity=0.923  Sum_probs=35.1

Q ss_pred             CCcceeeccccCc-------------ceecCCCCcccHhHHHHhhccCCCCcccc
Q 026563          138 EEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRARSQSCPFCR  179 (237)
Q Consensus       138 ~~~C~IC~~~~~~-------------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR  179 (237)
                      +..|+||++.+.+             .+..+|||.||..||.+|+..+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            3459999999842             25568999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=5.5e-10  Score=100.23  Aligned_cols=49  Identities=29%  Similarity=0.793  Sum_probs=42.3

Q ss_pred             CCCCCcceeeccccC-------------cceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          135 IEREEECGICLEICC-------------KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~-------------~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+.+..|.||++.+.             .|..++|||.+|.+|++.|.+++++||+||.++-
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            356789999999843             2477899999999999999999999999999953

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2.2e-10  Score=93.46  Aligned_cols=49  Identities=27%  Similarity=0.719  Sum_probs=42.8

Q ss_pred             CCCcceeeccccCc--ceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563          137 REEECGICLEICCK--IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  185 (237)
Q Consensus       137 ~~~~C~IC~~~~~~--~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~  185 (237)
                      ....|+|||+.+.+  ++-++|||.||..||...+.....||+||+.++..
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            34789999999986  45699999999999999999999999999977644

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.94  E-value=2.5e-10  Score=101.32  Aligned_cols=74  Identities=26%  Similarity=0.572  Sum_probs=59.4

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCccccCCcchhhhhhhhhHHHHHHH
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRL  213 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l~~l  213 (237)
                      .-+.|.||.++|..|++++|||.||.-||+.++..+..||.|+.++..-..+.+.+   .+|++.-.+..+..|..+
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~i---l~Eiv~S~~~~R~~Ll~f   95 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRI---LDEIVKSLNFARNHLLQF   95 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhH---HHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999998665555543   346666655555554443

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.94  E-value=3.8e-10  Score=71.16  Aligned_cols=38  Identities=47%  Similarity=1.065  Sum_probs=35.6

Q ss_pred             ceeeccccCcce-ecCCCCcccHhHHHHhhc--cCCCCccc
Q 026563          141 CGICLEICCKIV-LPDCNHSMCMRCYRNWRA--RSQSCPFC  178 (237)
Q Consensus       141 C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~--~~~~CP~C  178 (237)
                      |+||++.+.+++ +++|||.||..|+.+|+.  ....||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999998 899999999999999988  77899988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.90  E-value=9.4e-10  Score=69.44  Aligned_cols=43  Identities=37%  Similarity=0.970  Sum_probs=36.5

Q ss_pred             cceeeccccCccee-cCCCCcccHhHHHHhhcc-CCCCccccccc
Q 026563          140 ECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR-SQSCPFCRDSL  182 (237)
Q Consensus       140 ~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~  182 (237)
                      .|+||++.+.+++. ++|||.||..|+..|... ...||.||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            49999999965544 559999999999999986 88899998753

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.88  E-value=1.1e-09  Score=95.64  Aligned_cols=84  Identities=20%  Similarity=0.394  Sum_probs=63.8

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCccccCCcchhhhhhhhhHHHHHHHHHh
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSEDDIVDLASISRENLKRLFMY  216 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ei~d~~~~~~e~l~~l~~~  216 (237)
                      .-+.|-||.+.+..|+.++|||.||.-||+.++..+.-||.||.+......+..   ....++.+.....+..+......
T Consensus        24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~---s~~~ei~es~~~~r~~l~~~L~~  100 (391)
T COG5432          24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGS---SGSREINESHARNRDLLRKVLES  100 (391)
T ss_pred             hHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccc---hhHHHHHHhhhhccHHHHHHHhc
Confidence            447899999999999999999999999999999999999999998875444333   23345555555556666666555


Q ss_pred             hccCCCC
Q 026563          217 IDKLPFI  223 (237)
Q Consensus       217 i~~lp~~  223 (237)
                      ...+|..
T Consensus       101 ~~~~p~p  107 (391)
T COG5432         101 LCRLPRP  107 (391)
T ss_pred             ccCCCCc
Confidence            5555553

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.83  E-value=2.1e-09  Score=69.05  Aligned_cols=41  Identities=34%  Similarity=0.985  Sum_probs=36.4

Q ss_pred             cceeeccccC---cceecCCCCcccHhHHHHhhccCCCCccccc
Q 026563          140 ECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD  180 (237)
Q Consensus       140 ~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~  180 (237)
                      .|+||.+.+.   .+.+++|||.||..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4899999983   4688999999999999999877899999984

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=5.9e-09  Score=94.06  Aligned_cols=46  Identities=30%  Similarity=0.803  Sum_probs=39.8

Q ss_pred             CcceeeccccCcc---eecCCCCcccHhHHHHhhccC-CCCccccccccc
Q 026563          139 EECGICLEICCKI---VLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR  184 (237)
Q Consensus       139 ~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~  184 (237)
                      ..|+||+|.+.+.   ..+||+|.||..||.+|+... ..||+|+..+.+
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            4999999999863   668999999999999999965 569999987753

>smart00184 RING Ring finger

Probab=98.76  E-value=4.5e-09  Score=64.00  Aligned_cols=38  Identities=39%  Similarity=1.037  Sum_probs=34.9

Q ss_pred             ceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccc
Q 026563          141 CGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFC  178 (237)
Q Consensus       141 C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~C  178 (237)
                      |+||++....++.++|||.||..|+..|+. ....||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789999988889999999999999999998 67789987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.75  E-value=6.2e-09  Score=75.67  Aligned_cols=48  Identities=29%  Similarity=0.807  Sum_probs=39.6

Q ss_pred             CCCCcceeeccccCc-------------ceecCCCCcccHhHHHHhhcc---CCCCcccccccc
Q 026563          136 EREEECGICLEICCK-------------IVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~-------------~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~~~~  183 (237)
                      ..+..|+||...|..             .+.-.|+|.||..||.+|+..   +..||+||++..
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            357889999988871             245679999999999999983   589999999865

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=6.5e-09  Score=96.91  Aligned_cols=49  Identities=31%  Similarity=0.706  Sum_probs=43.1

Q ss_pred             CCcceeeccccCcceecCCCCcccHhHHHHhhc-----cCCCCccccccccccC
Q 026563          138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRRVN  186 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~~~~~~  186 (237)
                      +..||||++...-|+.+.|||.||..||.+++.     .-..||+||..+...+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            789999999999999999999999999998665     3579999999988533

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=8.3e-09  Score=90.59  Aligned_cols=47  Identities=30%  Similarity=0.808  Sum_probs=41.6

Q ss_pred             CCCcceeeccccCc---ceecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563          137 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~  183 (237)
                      ...+|+|||+.+.+   .+.+||.|.||..|+.+|+. .+..||.||.++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            34789999999985   36789999999999999998 7899999999875

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.69  E-value=7e-09  Score=73.84  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=40.5

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCcccccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV  185 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~~  185 (237)
                      +++.|+|+.+.+.+|+++++||.|++.||.+|+.. ...||+|+.++...
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            46889999999999999999999999999999997 99999999988743

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.3e-08  Score=87.86  Aligned_cols=48  Identities=27%  Similarity=0.693  Sum_probs=43.0

Q ss_pred             CCCCcceeeccccCcceecCCCCcccHhHHHH-hhccCCC-Ccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHSMCMRCYRN-WRARSQS-CPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~-w~~~~~~-CP~CR~~~~  183 (237)
                      ..+..|.||++....+..++|||.||..||.. |-.+... ||+||+...
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence            56789999999999999999999999999998 9886555 999998765

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.62  E-value=1.2e-08  Score=65.18  Aligned_cols=35  Identities=29%  Similarity=0.800  Sum_probs=21.9

Q ss_pred             ceeeccccCc----ceecCCCCcccHhHHHHhhcc----CCCCc
Q 026563          141 CGICLEICCK----IVLPDCNHSMCMRCYRNWRAR----SQSCP  176 (237)
Q Consensus       141 C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~----~~~CP  176 (237)
                      |+||.+ +.+    |++++|||.||.+|+.++..+    ..+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 776    888899999999999999873    45666

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3.7e-08  Score=94.83  Aligned_cols=47  Identities=38%  Similarity=0.725  Sum_probs=42.7

Q ss_pred             CCCCcceeeccccCc-----ceecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563          136 EREEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL  182 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~  182 (237)
                      ..+..|.||++.+..     +..++|||.||..|+..|+++..+||+||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            447899999999987     78899999999999999999999999999943

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=3e-08  Score=65.67  Aligned_cols=47  Identities=36%  Similarity=0.785  Sum_probs=41.3

Q ss_pred             CCcceeeccccCcceecCCCCc-ccHhHHHH-hhccCCCCccccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHS-MCMRCYRN-WRARSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~-w~~~~~~CP~CR~~~~~  184 (237)
                      ..+|.||+|...+.++.-|||. +|..|-.+ |...+..||+||.+++.
T Consensus         7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            3789999999999999999996 99999877 55588999999999874

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=6.6e-08  Score=83.56  Aligned_cols=46  Identities=37%  Similarity=0.789  Sum_probs=41.7

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRD  180 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~  180 (237)
                      ...+..|+||++.+.+|.+++|||.||..|+..++.....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence            3567899999999999999999999999999998777789999994

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.34  E-value=9.3e-08  Score=65.71  Aligned_cols=46  Identities=30%  Similarity=0.734  Sum_probs=25.8

Q ss_pred             CCCcceeeccccCcce-ecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +-..|++|.+.+.+|+ +..|.|.||..|+.+-+.  ..||+|+.+-..
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~   52 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI   52 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence            4578999999999996 589999999999988654  459999988653

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.6e-07  Score=91.42  Aligned_cols=47  Identities=23%  Similarity=0.653  Sum_probs=42.8

Q ss_pred             CCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~  184 (237)
                      -..|++|...+.+.+++.|||.||..|+..-.. +...||.|..+|..
T Consensus       643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            368999999999999999999999999988766 89999999999873

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.29  E-value=1.1e-06  Score=78.45  Aligned_cols=51  Identities=27%  Similarity=0.559  Sum_probs=38.4

Q ss_pred             CCcceeeccc--cCcc---eecCCCCcccHhHHHHhh-ccCCCCccccccccccCCC
Q 026563          138 EEECGICLEI--CCKI---VLPDCNHSMCMRCYRNWR-ARSQSCPFCRDSLRRVNSG  188 (237)
Q Consensus       138 ~~~C~IC~~~--~~~~---v~~~CgH~FC~~Ci~~w~-~~~~~CP~CR~~~~~~~~~  188 (237)
                      +..||+|...  +..-   .+.+|||.||..|+...+ .....||.|+.++...+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            4679999984  3321   223799999999999954 5677999999998865544

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=98.28  E-value=2e-07  Score=87.34  Aligned_cols=103  Identities=20%  Similarity=0.441  Sum_probs=76.8

Q ss_pred             EecCCccccccccccccHHHHHhhhhhhHHHhhhcCCChHHHHhHHHhHHHHhhhcccccCCCccccCCCCCcceeeccc
Q 026563           68 AYADGKTTMCTRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEI  147 (237)
Q Consensus        68 v~~dg~~~~~~~~r~~si~efy~~I~psl~qL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~  147 (237)
                      .|.|.+.+..++--.+++.+.|+.||..+.++++.....+--...      -.+.       + ..+...+.+|.+|.+.
T Consensus       480 LY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S------~~~n-------~-~~enk~~~~C~lc~d~  545 (791)
T KOG1002|consen  480 LYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYS------ANAN-------L-PDENKGEVECGLCHDP  545 (791)
T ss_pred             HHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeeh------hhcC-------C-CccccCceeecccCCh
Confidence            355677778888788888999999999999888666554322111      0111       1 1122456799999999


Q ss_pred             cCcceecCCCCcccHhHHHHhhc-----cCCCCccccccccc
Q 026563          148 CCKIVLPDCNHSMCMRCYRNWRA-----RSQSCPFCRDSLRR  184 (237)
Q Consensus       148 ~~~~v~~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~~~~  184 (237)
                      -.+++..+|.|.||+-|+.++..     .+.+||.|...+.-
T Consensus       546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi  587 (791)
T KOG1002|consen  546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI  587 (791)
T ss_pred             hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence            99999999999999999998876     46899999887763

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2.5e-06  Score=76.76  Aligned_cols=49  Identities=33%  Similarity=0.821  Sum_probs=44.3

Q ss_pred             CCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +...+|-||+....+.+++||.|. .|..|.+...-.+..||+||.++..
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            446899999999999999999996 9999999988788999999999873

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.1e-06  Score=79.32  Aligned_cols=51  Identities=33%  Similarity=0.783  Sum_probs=46.8

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      .+..+.+|.||+..+.+|+.++|||.||..|+.+-+.....||.||.++..
T Consensus        80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            346789999999999999999999999999999988899999999999874

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.00  E-value=2.1e-06  Score=78.19  Aligned_cols=50  Identities=32%  Similarity=0.835  Sum_probs=43.8

Q ss_pred             CCcceeeccccCcceecCCCCcccHhHHHHhhc--cCCCCccccccccccCC
Q 026563          138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRRVNS  187 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~~~~~  187 (237)
                      ...|.||-+.-.+..+-+|||..|..|+..|..  ...+||+||..++....
T Consensus       369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~  420 (563)
T KOG1785|consen  369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP  420 (563)
T ss_pred             HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence            357999999999998999999999999999986  47899999999985443

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.99  E-value=2.7e-06  Score=75.83  Aligned_cols=92  Identities=18%  Similarity=0.405  Sum_probs=66.6

Q ss_pred             cCCCCCcceeeccccCcce-ecCCCCcccHhHHHHhhccCCCCccccccccccCCCCcc-ccCCcchhhh--hhhhhHHH
Q 026563          134 DIEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLW-IYTSEDDIVD--LASISREN  209 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~-~~~~~~ei~d--~~~~~~e~  209 (237)
                      +......|.+|-.++.++. ++.|-|.||..||.+++..+..||.|...+....+..+. .....++++-  .......+
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLVPgl~erE   90 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLVPGLQERE   90 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccccccCCcchHHHHHHHHHcchHHHHH
Confidence            4456789999999999984 478999999999999999999999999988765433221 1111223221  12245667


Q ss_pred             HHHHHHhhccCC-CCCC
Q 026563          210 LKRLFMYIDKLP-FITP  225 (237)
Q Consensus       210 l~~l~~~i~~lp-~~~p  225 (237)
                      +++...|..+.| +++|
T Consensus        91 ~k~~rdFy~~~~~~d~~  107 (331)
T KOG2660|consen   91 MKRRRDFYKSRPLVDVP  107 (331)
T ss_pred             HHHHHHHHHhCCCcccC
Confidence            888888888888 5555

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=3.7e-06  Score=78.35  Aligned_cols=48  Identities=29%  Similarity=0.695  Sum_probs=40.3

Q ss_pred             CCCCcceeeccccCc-----------------ceecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563          136 EREEECGICLEICCK-----------------IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~-----------------~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~  183 (237)
                      +....|+|||..+.-                 -+++||.|.||..|+.+|.. .+-.||.||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence            456789999987651                 24579999999999999999 6669999999886

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=7.1e-06  Score=72.31  Aligned_cols=47  Identities=26%  Similarity=0.571  Sum_probs=40.8

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~  183 (237)
                      ...+|+||+....-|+.+.|+|.||.-||..-.. ...+|++||.++.
T Consensus         6 ~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pid   53 (324)
T KOG0824|consen    6 KKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPID   53 (324)
T ss_pred             cCCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCC
Confidence            3468999999999999999999999999987554 4566999999987

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=3.4e-06  Score=59.70  Aligned_cols=46  Identities=30%  Similarity=0.723  Sum_probs=36.8

Q ss_pred             CCcceeeccccCc------------c-eecCCCCcccHhHHHHhhc---cCCCCcccccccc
Q 026563          138 EEECGICLEICCK------------I-VLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLR  183 (237)
Q Consensus       138 ~~~C~IC~~~~~~------------~-v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~  183 (237)
                      ++.|+||.-.|.-            | +.--|.|.||..||.+|+.   +...||+||....
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3489999887762            2 3345999999999999987   5689999998765

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.80  E-value=9.4e-06  Score=57.97  Aligned_cols=30  Identities=27%  Similarity=0.634  Sum_probs=27.5

Q ss_pred             cCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          154 PDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      --|.|.||..||.+|+.....||++|+...
T Consensus        52 G~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          52 GVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             EecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            459999999999999999999999998765

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.73  E-value=6.3e-06  Score=58.21  Aligned_cols=46  Identities=30%  Similarity=0.814  Sum_probs=23.8

Q ss_pred             CCcceeeccccC-c---c--ee--cCCCCcccHhHHHHhhcc-----------CCCCcccccccc
Q 026563          138 EEECGICLEICC-K---I--VL--PDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLR  183 (237)
Q Consensus       138 ~~~C~IC~~~~~-~---~--v~--~~CgH~FC~~Ci~~w~~~-----------~~~CP~CR~~~~  183 (237)
                      +.+|+||+.... .   +  +-  ..|++.||..|+.+|+..           ...||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            468999998765 2   2  22  379999999999999871           147999999886

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=2.7e-06  Score=76.36  Aligned_cols=48  Identities=29%  Similarity=0.679  Sum_probs=40.5

Q ss_pred             CCCCcceeeccccCcc-eecCCCCcccHhHHHHhhc-cCCCCcccccccc
Q 026563          136 EREEECGICLEICCKI-VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~  183 (237)
                      ..+..|+||++.+... ....|+|.||..||..-+. ....||.||+.+.
T Consensus        41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            4568999999999865 4478999999999977555 7899999999875

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.71  E-value=1.1e-05  Score=67.35  Aligned_cols=45  Identities=27%  Similarity=0.584  Sum_probs=40.7

Q ss_pred             CcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      +.|.||...+..|+.+.|||.||..|...-......|-+|.+...
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~  241 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY  241 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence            689999999999999999999999999887778899999976643

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.70  E-value=1.6e-05  Score=73.82  Aligned_cols=49  Identities=29%  Similarity=0.727  Sum_probs=45.0

Q ss_pred             CCCCCcceeeccccCccee-cCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          135 IEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+.+..|++|+..+.+|+. +.|||.||..|+..|...+..||.|+..+.
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~   67 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELT   67 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccc
Confidence            4567899999999999999 499999999999999999999999988876

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.69  E-value=1.2e-05  Score=69.94  Aligned_cols=48  Identities=25%  Similarity=0.699  Sum_probs=39.4

Q ss_pred             CCCCcceeeccccCc----------ceecCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563          136 EREEECGICLEICCK----------IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~----------~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      .++..|.||-..+..          ...++|+|+||..||+.|-.  +.++||.|+..+.
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            356789999887652          34689999999999999976  7899999987664

>PHA03096 p28-like protein; Provisional

Probab=97.67  E-value=8.7e-05  Score=65.96  Aligned_cols=43  Identities=28%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             CcceeeccccCc--------ceecCCCCcccHhHHHHhhc---cCCCCcccccc
Q 026563          139 EECGICLEICCK--------IVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDS  181 (237)
Q Consensus       139 ~~C~IC~~~~~~--------~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~  181 (237)
                      -.|+||++....        ..+.+|.|.||..|+..|..   ...+||.||..
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~  232 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL  232 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence            579999997652        47789999999999999987   23445555443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0002  Score=62.59  Aligned_cols=53  Identities=26%  Similarity=0.552  Sum_probs=42.8

Q ss_pred             ccccCCCCCcceeeccccCccee-cCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563          131 SEIDIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       131 ~~~~~~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      +....+.+.+|++|-+....|.. .+|||.||..|+..-..  .+.+||.|..+..
T Consensus       232 sss~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  232 SSSTGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34445667899999999998865 55999999999987655  5689999987765

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.64  E-value=1.4e-05  Score=79.45  Aligned_cols=50  Identities=28%  Similarity=0.747  Sum_probs=40.7

Q ss_pred             cCCCCCcceeeccccC--cc-----eecCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563          134 DIEREEECGICLEICC--KI-----VLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~--~~-----v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      ..+...+|+||...+.  +.     ....|.|-||..|+-+|+.  .+..||+||..++
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            4566789999998765  22     3345999999999999998  6789999998876

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=3.6e-05  Score=67.78  Aligned_cols=46  Identities=22%  Similarity=0.527  Sum_probs=42.1

Q ss_pred             CCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+.|.||...+..||.+.|||.||..|...-+.....|++|...+.
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhccccccCCcceecccccc
Confidence            3679999999999999999999999999988888999999987765

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.54  E-value=3.8e-05  Score=71.03  Aligned_cols=49  Identities=31%  Similarity=0.658  Sum_probs=39.0

Q ss_pred             ccCCCCCcceeeccccCcc----eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          133 IDIEREEECGICLEICCKI----VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       133 ~~~~~~~~C~IC~~~~~~~----v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      ....+-.+|+||+|.+.+-    +...|.|+||-.|+..|.  ..+||+||-...
T Consensus       170 ~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  170 TGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             CCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence            3344557899999998752    446799999999999995  588999997655

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.50  E-value=6e-05  Score=51.09  Aligned_cols=42  Identities=21%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             CCCCcceeeccccCccee-cCCCCcccHhHHHHhhc--cCCCCcc
Q 026563          136 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRA--RSQSCPF  177 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~--~~~~CP~  177 (237)
                      .....|+|.+..+.+|+. ..|||.|.++.|.+|+.  +...||.
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            345899999999999977 59999999999999994  6789998

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.40  E-value=0.0001  Score=48.40  Aligned_cols=40  Identities=20%  Similarity=0.663  Sum_probs=31.4

Q ss_pred             cceeecc--ccCcceecCCC-----CcccHhHHHHhhc--cCCCCcccc
Q 026563          140 ECGICLE--ICCKIVLPDCN-----HSMCMRCYRNWRA--RSQSCPFCR  179 (237)
Q Consensus       140 ~C~IC~~--~~~~~v~~~Cg-----H~FC~~Ci~~w~~--~~~~CP~CR  179 (237)
                      .|.||++  .-.++...||.     |.+|..|+.+|+.  +..+||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4889997  22345667885     8899999999996  456999995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00015  Score=65.43  Aligned_cols=50  Identities=22%  Similarity=0.569  Sum_probs=45.3

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ..++..|+||..-....+..||+|.-|..||.+.+.+.+.|-+|+..+..
T Consensus       419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             CcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            35678999999998889999999999999999999999999999887764

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00013  Score=66.43  Aligned_cols=41  Identities=27%  Similarity=0.771  Sum_probs=31.1

Q ss_pred             CcceeeccccCc----ceecCCCCcccHhHHHHhhc---cCCCCcccc
Q 026563          139 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRA---RSQSCPFCR  179 (237)
Q Consensus       139 ~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR  179 (237)
                      -.|.||.+.+..    ..+-.|||.||..|+..|++   .+..||.|+
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~   52 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ   52 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence            479999554442    12223999999999999999   336899998

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00038  Score=63.90  Aligned_cols=44  Identities=23%  Similarity=0.564  Sum_probs=34.6

Q ss_pred             CCcceeeccccCc---ceecCCCCcccHhHHHHhhc--------cCCCCcccccc
Q 026563          138 EEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRDS  181 (237)
Q Consensus       138 ~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~--------~~~~CP~CR~~  181 (237)
                      -..|.||++...-   .+.++|+|.||+.|...+..        +...||-+...
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~  238 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG  238 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence            4789999997653   47799999999999999876        34577776543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.13  E-value=9e-05  Score=72.59  Aligned_cols=52  Identities=27%  Similarity=0.629  Sum_probs=41.8

Q ss_pred             CCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCccccccccccCCCC
Q 026563          138 EEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGD  189 (237)
Q Consensus       138 ~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~  189 (237)
                      ...|++|+..+.+.   ....|+|.||..|+..|-....+||+||..+.++...+
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e  177 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE  177 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence            46788888776643   33579999999999999999999999999988655443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=97.03  E-value=0.00029  Score=69.50  Aligned_cols=47  Identities=26%  Similarity=0.786  Sum_probs=39.8

Q ss_pred             CcceeeccccCcceecCCCCcccHhHHHHhhc--cCCCCccccccccccC
Q 026563          139 EECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRRVN  186 (237)
Q Consensus       139 ~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~~~~  186 (237)
                      ..|.+|++ ...++.+.|||.||..|+...+.  ....||.||..+....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            79999999 77788899999999999988766  3457999999887443

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00014  Score=63.96  Aligned_cols=43  Identities=30%  Similarity=0.855  Sum_probs=37.1

Q ss_pred             CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ...|.||++...+-+.++|||. -|.+|-.+    ...||+||.-+.+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHHH
Confidence            6789999999999999999996 79999655    3599999987764

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0003  Score=52.74  Aligned_cols=29  Identities=24%  Similarity=0.694  Sum_probs=26.1

Q ss_pred             cCCCCcccHhHHHHhhccCCCCccccccc
Q 026563          154 PDCNHSMCMRCYRNWRARSQSCPFCRDSL  182 (237)
Q Consensus       154 ~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~  182 (237)
                      -.|.|.||..||.+|++....||+|.+.-
T Consensus        79 G~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   79 GVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            45999999999999999999999997653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.0005  Score=63.07  Aligned_cols=46  Identities=28%  Similarity=0.743  Sum_probs=38.3

Q ss_pred             CCcceeeccccCc-----ceecCCCCcccHhHHHHhhc--cCCCCcccccccc
Q 026563          138 EEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       138 ~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      ...|+||++.+.-     .+.+.|||.|-..||++|+.  ....||.|...-.
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat   56 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT   56 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence            4789999998874     36789999999999999997  3579999966544

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.80  E-value=0.00067  Score=58.34  Aligned_cols=50  Identities=24%  Similarity=0.707  Sum_probs=35.3

Q ss_pred             CcceeeccccC-c-ceecCCCCcccHhHHHHhhccCCCCccccccccccCCCCc
Q 026563          139 EECGICLEICC-K-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL  190 (237)
Q Consensus       139 ~~C~IC~~~~~-~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~  190 (237)
                      ..|..|.-.-. + -.++.|+|+||..|...-.  ...||+|+.++..+.....
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l~~s   55 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRIIQLNRS   55 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCC--ccccccccceeeeeecccc
Confidence            35777765444 2 3678999999999965532  2399999999876555544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=0.00069  Score=67.11  Aligned_cols=67  Identities=22%  Similarity=0.377  Sum_probs=47.9

Q ss_pred             HHHhHHHHhhhcccccCCCccccCC----CCCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCcccccc
Q 026563          112 KEICDAKYKKKGRMDKGKLSEIDIE----REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDS  181 (237)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~  181 (237)
                      .+..++.+.+..++.+.++.....+    ....|..|-..+.-| |...|||+||++|..   .+...||.|+..
T Consensus       810 d~~~Ie~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  810 DEDAIEVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence            3445566666665554444332222    236899999999876 558899999999988   578999999873

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.62  E-value=0.0012  Score=44.10  Aligned_cols=46  Identities=28%  Similarity=0.677  Sum_probs=37.3

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      .+..|-.|...-...++++|||..|..|..-+  +-+.||+|..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence            34678888887778889999999999996554  56899999988764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.0032  Score=57.04  Aligned_cols=46  Identities=28%  Similarity=0.695  Sum_probs=35.1

Q ss_pred             CCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      .....|.||.+...+.+..+|||.-|  |..-.. ...+||+||..+..
T Consensus       303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIRL  348 (355)
T ss_pred             CCCCceEEecCCccceeeecCCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence            34578999999999999999999855  544322 34569999998763

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.38  E-value=0.0026  Score=57.50  Aligned_cols=51  Identities=27%  Similarity=0.602  Sum_probs=42.7

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc--cCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA--RSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~~~~~  184 (237)
                      ..+++..|.||.+.+.-..++||+|..|--|..+...  ..+.||+||.....
T Consensus        57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~  109 (493)
T COG5236          57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA  109 (493)
T ss_pred             cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence            3456678999999998888899999999999977544  88999999987653

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0022  Score=57.03  Aligned_cols=45  Identities=31%  Similarity=0.728  Sum_probs=38.2

Q ss_pred             CCcceeeccccCc------ceecCCCCcccHhHHHHhhc-cCCCCccccccc
Q 026563          138 EEECGICLEICCK------IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSL  182 (237)
Q Consensus       138 ~~~C~IC~~~~~~------~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~  182 (237)
                      ...|.||-+.+..      |..+.|||.+|..|+..... ....||+||.+.
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            3679999998873      67778999999999999877 567899999985

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.96  E-value=0.0032  Score=55.88  Aligned_cols=42  Identities=21%  Similarity=0.558  Sum_probs=36.2

Q ss_pred             CcceeeccccCcceec-CCCCcccHhHHHHh-hccCCCCccccc
Q 026563          139 EECGICLEICCKIVLP-DCNHSMCMRCYRNW-RARSQSCPFCRD  180 (237)
Q Consensus       139 ~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w-~~~~~~CP~CR~  180 (237)
                      +.|+.|...+..++.+ -|||.||.+||..- +.....||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            8899999999988776 68999999999874 457899999944

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.80  E-value=0.0083  Score=44.84  Aligned_cols=36  Identities=19%  Similarity=0.492  Sum_probs=29.0

Q ss_pred             ccccCCCCCcceeeccccCcc--eecCCCCcccHhHHH
Q 026563          131 SEIDIEREEECGICLEICCKI--VLPDCNHSMCMRCYR  166 (237)
Q Consensus       131 ~~~~~~~~~~C~IC~~~~~~~--v~~~CgH~FC~~Ci~  166 (237)
                      ....+..+..|++|...+...  +..||||.||..|+.
T Consensus        71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            345566788899999988753  558999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=95.77  E-value=0.0038  Score=65.09  Aligned_cols=55  Identities=25%  Similarity=0.639  Sum_probs=41.6

Q ss_pred             CCCCcceeeccccC---cceecCCCCcccHhHHHHhhc----------cCCCCccccccccccCCCCc
Q 026563          136 EREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRA----------RSQSCPFCRDSLRRVNSGDL  190 (237)
Q Consensus       136 ~~~~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~----------~~~~CP~CR~~~~~~~~~~~  190 (237)
                      ..+..|-||+..--   ..+.+.|+|.||..|.++.++          +-.+||+|..++++....|+
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDL 3551 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDL 3551 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHH
Confidence            34577889986432   347799999999999976544          23699999999987766665

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.0073  Score=52.26  Aligned_cols=51  Identities=14%  Similarity=0.250  Sum_probs=44.3

Q ss_pred             CCCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563          137 REEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS  187 (237)
Q Consensus       137 ~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~  187 (237)
                      ....|++|.+.+..    .++-+|||.||.+|.++.+.....||+|-.+++..+.
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi  274 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI  274 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence            45689999999885    3778999999999999999999999999999885544

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=95.69  E-value=0.0053  Score=55.02  Aligned_cols=44  Identities=25%  Similarity=0.657  Sum_probs=37.0

Q ss_pred             CCCCcceeeccccCcceecCC--CCcccHhHHHHhhccCCCCcccccccc
Q 026563          136 EREEECGICLEICCKIVLPDC--NHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~C--gH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+-++||||.+.+..|+.. |  ||.-|..|-.+   ....||.||.+++
T Consensus        46 ~~lleCPvC~~~l~~Pi~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPPIFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             hhhccCchhhccCccccee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence            3457999999999988653 6  79999999754   5789999999987

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.65  E-value=0.0055  Score=56.92  Aligned_cols=35  Identities=29%  Similarity=0.686  Sum_probs=31.7

Q ss_pred             CCCCcceeeccccCcceecCCCCcccHhHHHHhhc
Q 026563          136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA  170 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~  170 (237)
                      ++++.|+||...+.+|++++|||..|+.|....+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            46789999999999999999999999999987654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.61  E-value=0.02  Score=50.32  Aligned_cols=49  Identities=16%  Similarity=0.404  Sum_probs=40.2

Q ss_pred             CCCCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563          136 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  185 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~  185 (237)
                      .....|||....+..    ..+-+|||+|+..++.+.. ....||+|-.++...
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence            456889999988863    3557999999999999984 467899999999844

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.41  E-value=0.013  Score=47.44  Aligned_cols=47  Identities=28%  Similarity=0.675  Sum_probs=35.4

Q ss_pred             CCcceeeccccCcceecCCC------------Cc-ccHhHHHHhhcc-------------------------------CC
Q 026563          138 EEECGICLEICCKIVLPDCN------------HS-MCMRCYRNWRAR-------------------------------SQ  173 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~Cg------------H~-FC~~Ci~~w~~~-------------------------------~~  173 (237)
                      +..|+||||..-.+|++-|.            .. -|.+|+.++.+.                               ..
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            46899999999998888653            22 267899887540                               24


Q ss_pred             CCccccccccc
Q 026563          174 SCPFCRDSLRR  184 (237)
Q Consensus       174 ~CP~CR~~~~~  184 (237)
                      .||+||..+..
T Consensus        82 ~CPLCRG~V~G   92 (162)
T PF07800_consen   82 ACPLCRGEVKG   92 (162)
T ss_pred             cCccccCceec
Confidence            79999999874

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.31  E-value=0.0042  Score=56.96  Aligned_cols=45  Identities=33%  Similarity=0.699  Sum_probs=36.1

Q ss_pred             CCCCcceeeccccCc----ceecCCCCcccHhHHHHhhc--cCCCCccccc
Q 026563          136 EREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRA--RSQSCPFCRD  180 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~--~~~~CP~CR~  180 (237)
                      +-++.|..|-+.+-.    ---+||.|+||.+|+.+++.  ...+||.||+
T Consensus       363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            445789999987652    13378999999999999887  4679999984

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=95.24  E-value=0.0091  Score=53.04  Aligned_cols=47  Identities=26%  Similarity=0.707  Sum_probs=37.5

Q ss_pred             CCCcceeeccccCc---ceecCCCCcccHhHHHHhhc-----------------------cCCCCcccccccc
Q 026563          137 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRA-----------------------RSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~-----------------------~~~~CP~CR~~~~  183 (237)
                      ....|.||+--|.+   ...+.|-|.||..|+.+++.                       ....||+||..++
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            45689999988874   36689999999999977654                       1257999999987

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.18  E-value=0.013  Score=58.59  Aligned_cols=37  Identities=19%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             ccCCCCCcceeeccccC-cc-eecCCCCcccHhHHHHhh
Q 026563          133 IDIEREEECGICLEICC-KI-VLPDCNHSMCMRCYRNWR  169 (237)
Q Consensus       133 ~~~~~~~~C~IC~~~~~-~~-v~~~CgH~FC~~Ci~~w~  169 (237)
                      ...+....|.+|.-.+. .| ++.+|||.||.+|+.+..
T Consensus       812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence            44567789999998765 33 668899999999997753

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.03  E-value=0.018  Score=37.56  Aligned_cols=42  Identities=26%  Similarity=0.696  Sum_probs=21.6

Q ss_pred             ceeeccccCcc--ee--cCCCCcccHhHHHHhhc-cCCCCccccccc
Q 026563          141 CGICLEICCKI--VL--PDCNHSMCMRCYRNWRA-RSQSCPFCRDSL  182 (237)
Q Consensus       141 C~IC~~~~~~~--v~--~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~  182 (237)
                      |++|.+.+...  ..  =+||+..|..|+.+... ....||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            67888877421  12  26899999999999886 689999999874

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.62  E-value=0.022  Score=44.83  Aligned_cols=49  Identities=31%  Similarity=0.676  Sum_probs=38.4

Q ss_pred             CCCcceeeccccCcceec----CCCCcccHhHHHHhhc---cCCCCcccccccccc
Q 026563          137 REEECGICLEICCKIVLP----DCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRV  185 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~----~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~~  185 (237)
                      .--+|.||.|...+...+    =||-..|..|....++   ....||.|+.+++..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            457999999987754322    2999999999988554   578999999999843

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.41  E-value=0.043  Score=48.55  Aligned_cols=49  Identities=24%  Similarity=0.583  Sum_probs=36.3

Q ss_pred             cceeeccccC-c----ceecCCCCcccHhHHHHhhc-cCCCCccccccccccCCC
Q 026563          140 ECGICLEICC-K----IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNSG  188 (237)
Q Consensus       140 ~C~IC~~~~~-~----~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~~~  188 (237)
                      .|++|..... .    ..+-+|||..|.+|....+. +...||-|...+...+..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr   56 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR   56 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence            5888886432 1    23348999999999999877 789999998877644433

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.94  E-value=0.063  Score=43.60  Aligned_cols=47  Identities=23%  Similarity=0.585  Sum_probs=35.7

Q ss_pred             CCCCcceeeccccCcceecCCC--Cc---ccHhHHHHhhc--cCCCCcccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCN--HS---MCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~Cg--H~---FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      ..+..|-||.+.-.+ ...||.  ..   -|.+|+++|..  +...|++|+.+..
T Consensus         6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            456789999987543 234555  42   49999999998  6789999988875

>PHA02862 5L protein; Provisional

Probab=93.72  E-value=0.058  Score=43.12  Aligned_cols=44  Identities=20%  Similarity=0.708  Sum_probs=34.6

Q ss_pred             CcceeeccccCcceecCCCC-----cccHhHHHHhhc--cCCCCcccccccc
Q 026563          139 EECGICLEICCKIVLPDCNH-----SMCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       139 ~~C~IC~~~~~~~v~~~CgH-----~FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      ..|-||.+.-.+.+ -||.-     .-|++|+.+|+.  +...||+|+.+..
T Consensus         3 diCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            57999999866553 45653     369999999998  6789999998875

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=93.55  E-value=0.11  Score=47.83  Aligned_cols=50  Identities=28%  Similarity=0.701  Sum_probs=33.8

Q ss_pred             cCCCCCcceeeccccCccee-----------------cCCCCc-----ccHhHHHHhhc-------------cCCCCccc
Q 026563          134 DIEREEECGICLEICCKIVL-----------------PDCNHS-----MCMRCYRNWRA-------------RSQSCPFC  178 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~-----------------~~CgH~-----FC~~Ci~~w~~-------------~~~~CP~C  178 (237)
                      ..++.+.|--|+..-.+..+                 .+|...     -|.+|+-+|+.             ++..||.|
T Consensus       267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC  346 (358)
T PF10272_consen  267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC  346 (358)
T ss_pred             CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence            33456778888875543211                 234443     37899988876             35699999


Q ss_pred             ccccc
Q 026563          179 RDSLR  183 (237)
Q Consensus       179 R~~~~  183 (237)
                      |+.+.
T Consensus       347 Ra~FC  351 (358)
T PF10272_consen  347 RAKFC  351 (358)
T ss_pred             cccce
Confidence            99987

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.53  E-value=0.039  Score=49.64  Aligned_cols=45  Identities=22%  Similarity=0.435  Sum_probs=36.5

Q ss_pred             CCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563          138 EEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL  182 (237)
Q Consensus       138 ~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~  182 (237)
                      ...|++|+..-..| ++.--|-.||..|+-.+....+.||+=..+.
T Consensus       300 ~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  300 REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            46899999988776 4444699999999999999999999754443

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.44  E-value=0.037  Score=35.81  Aligned_cols=37  Identities=30%  Similarity=0.713  Sum_probs=25.1

Q ss_pred             cCcceecCCC-CcccHhHHHHhhccCCCCccccccccc
Q 026563          148 CCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       148 ~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      |.+..+..|. |..|..|+...+..+..||+|..++..
T Consensus        10 f~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   10 FANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             S--SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             hcCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            3444456687 899999999999999999999988864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=0.042  Score=45.44  Aligned_cols=47  Identities=23%  Similarity=0.600  Sum_probs=35.5

Q ss_pred             CCcceeeccccCcc-------eecCCCCcccHhHHHHhhcc-----------CCCCccccccccc
Q 026563          138 EEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRAR-----------SQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~-----------~~~CP~CR~~~~~  184 (237)
                      ...|+||..+--+.       -...||..||+-|+..|+..           -..||.|..++.-
T Consensus       165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            35688888765433       22469999999999999872           1589999998863

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=0.032  Score=49.82  Aligned_cols=46  Identities=26%  Similarity=0.626  Sum_probs=33.4

Q ss_pred             CCcceeeccccCc-ceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563          138 EEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  185 (237)
Q Consensus       138 ~~~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~  185 (237)
                      ...|.-|--.+.. ..+.+|.|.||.+|.+.-  ..+.||.|-..+.++
T Consensus        90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~VqrI  136 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRVQRI  136 (389)
T ss_pred             eEeecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHHHHH
Confidence            4567777655543 456789999999997543  368999998776643

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=0.074  Score=45.57  Aligned_cols=47  Identities=19%  Similarity=0.477  Sum_probs=38.4

Q ss_pred             CCCcceeeccccCc--ceecCCCCcccHhHHHHhhc--------cCCCCcccccccc
Q 026563          137 REEECGICLEICCK--IVLPDCNHSMCMRCYRNWRA--------RSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~--~v~~~CgH~FC~~Ci~~w~~--------~~~~CP~CR~~~~  183 (237)
                      ..-.|..|...+..  .+.+.|-|.||..|+.+|-.        ..-.||.|..++-
T Consensus        49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF  105 (299)
T KOG3970|consen   49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF  105 (299)
T ss_pred             CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence            45679999988874  47788999999999999976        3468999987764

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=92.71  E-value=0.046  Score=43.25  Aligned_cols=34  Identities=26%  Similarity=0.612  Sum_probs=26.4

Q ss_pred             CCcceeeccccCc--ce-ecCCC------CcccHhHHHHhhcc
Q 026563          138 EEECGICLEICCK--IV-LPDCN------HSMCMRCYRNWRAR  171 (237)
Q Consensus       138 ~~~C~IC~~~~~~--~v-~~~Cg------H~FC~~Ci~~w~~~  171 (237)
                      ..+|.||++.+.+  ++ ...||      |.||.+|+.+|...
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            5799999998876  43 34565      67999999999543

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=92.38  E-value=0.029  Score=58.29  Aligned_cols=46  Identities=33%  Similarity=0.747  Sum_probs=40.0

Q ss_pred             CCCcceeeccccC-cceecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563          137 REEECGICLEICC-KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL  182 (237)
Q Consensus       137 ~~~~C~IC~~~~~-~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~  182 (237)
                      ....|.||.+.+. ......|||.+|..|...|...+..||.|....
T Consensus      1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence            3458999999988 567778999999999999999999999997443

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.33  E-value=0.055  Score=46.06  Aligned_cols=40  Identities=30%  Similarity=0.725  Sum_probs=33.2

Q ss_pred             cceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCcccccccc
Q 026563          140 ECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       140 ~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .|-.|.+.-....++||.|. +|..|-..    ...||+|+.+..
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence            39999998888889999995 99999543    467999998765

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.92  E-value=0.092  Score=47.57  Aligned_cols=47  Identities=30%  Similarity=0.658  Sum_probs=35.5

Q ss_pred             CCcceeeccccCc--c--eecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563          138 EEECGICLEICCK--I--VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~--~--v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~  184 (237)
                      +.-|+.|++.+..  -  .--+||-..|+-|+..... -+..||-||.....
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            3459999998763  2  2246899899999877655 57899999998764

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.87  E-value=0.085  Score=46.73  Aligned_cols=43  Identities=30%  Similarity=0.703  Sum_probs=36.3

Q ss_pred             CCcceeeccccC----cceecCCCCcccHhHHHHhhccCCCCccccc
Q 026563          138 EEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCPFCRD  180 (237)
Q Consensus       138 ~~~C~IC~~~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~  180 (237)
                      +..|+||.+.+.    .+..++|||..+..|.++.....-.||+|.+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            345999999765    3567899999999999998776699999987

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=91.80  E-value=0.041  Score=54.08  Aligned_cols=48  Identities=25%  Similarity=0.603  Sum_probs=39.9

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~  184 (237)
                      ...+|+||.....+++.+.|-|.||..|+-.-+.   ....||+|+..+..
T Consensus        20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK   70 (684)
T KOG4362|consen   20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK   70 (684)
T ss_pred             hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence            3578999999999999999999999999865433   46799999877653

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.66  E-value=0.15  Score=32.33  Aligned_cols=38  Identities=29%  Similarity=0.732  Sum_probs=22.2

Q ss_pred             ceeeccccCccee---cCCCCcccHhHHHHhhccCC--CCccc
Q 026563          141 CGICLEICCKIVL---PDCNHSMCMRCYRNWRARSQ--SCPFC  178 (237)
Q Consensus       141 C~IC~~~~~~~v~---~~CgH~FC~~Ci~~w~~~~~--~CP~C  178 (237)
                      |.+|.+.....+.   ..|+=.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            6678887776644   25888999999999888433  79987

; PDB: 3NW0_A 2CT0_A.

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=89.85  E-value=0.17  Score=32.66  Aligned_cols=38  Identities=26%  Similarity=0.714  Sum_probs=24.1

Q ss_pred             ceeeccccCc--ceecCCCC-----cccHhHHHHhhc--cCCCCccc
Q 026563          141 CGICLEICCK--IVLPDCNH-----SMCMRCYRNWRA--RSQSCPFC  178 (237)
Q Consensus       141 C~IC~~~~~~--~v~~~CgH-----~FC~~Ci~~w~~--~~~~CP~C  178 (237)
                      |-||++.-.+  +.+.||+-     ..|.+|+.+|+.  ++.+|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            5677776543  45566653     469999999998  66789887

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=89.38  E-value=0.27  Score=49.39  Aligned_cols=49  Identities=29%  Similarity=0.680  Sum_probs=37.2

Q ss_pred             CCCcceeeccccCc--c--eecCCCCcccHhHHHHhhc-------cCCCCcccccccccc
Q 026563          137 REEECGICLEICCK--I--VLPDCNHSMCMRCYRNWRA-------RSQSCPFCRDSLRRV  185 (237)
Q Consensus       137 ~~~~C~IC~~~~~~--~--v~~~CgH~FC~~Ci~~w~~-------~~~~CP~CR~~~~~~  185 (237)
                      ...+|.||.+.+..  +  .-.+|-|+||..||.+|-.       ..-.||-|+....++
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~  249 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTV  249 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccC
Confidence            44789999998873  2  2356889999999999976       234899998665543

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.21  E-value=0.27  Score=42.74  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=32.1

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA  170 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~  170 (237)
                      .+.....|+.|+.++.+|++.+=||.||++||.+++-
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            3455678999999999999999999999999988754

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=87.48  E-value=0.16  Score=44.03  Aligned_cols=47  Identities=28%  Similarity=0.680  Sum_probs=35.4

Q ss_pred             CCCcceeeccccC-cc-----eecCCCCcccHhHHHHhhc-cCCCCc--ccccccc
Q 026563          137 REEECGICLEICC-KI-----VLPDCNHSMCMRCYRNWRA-RSQSCP--FCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~-~~-----v~~~CgH~FC~~Ci~~w~~-~~~~CP--~CR~~~~  183 (237)
                      .+..||+|...-- .|     +.+.|-|.+|.+|..+.+. +...||  -|.+-+.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            3568999987532 22     3356999999999999887 678999  7866554

>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.40  E-value=0.44  Score=45.07  Aligned_cols=35  Identities=29%  Similarity=0.780  Sum_probs=30.4

Q ss_pred             CCCCcceeeccccCc-ceecCCCCcccHhHHHHhhc
Q 026563          136 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRA  170 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~  170 (237)
                      ....+|.||.+.... ...+.|||.||..|+..++.
T Consensus        68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~  103 (444)
T KOG1815|consen   68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG  103 (444)
T ss_pred             CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence            455899999999884 77789999999999999877

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.40  E-value=0.4  Score=44.55  Aligned_cols=34  Identities=32%  Similarity=0.746  Sum_probs=25.6

Q ss_pred             CCCcceeec-cccCc---ceecCCCCcccHhHHHHhhc
Q 026563          137 REEECGICL-EICCK---IVLPDCNHSMCMRCYRNWRA  170 (237)
Q Consensus       137 ~~~~C~IC~-~~~~~---~v~~~CgH~FC~~Ci~~w~~  170 (237)
                      ...+|.||. +....   .....|+|.||..|..+..+
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie  182 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE  182 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence            457899999 43332   13467999999999998876

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.64  E-value=0.28  Score=47.97  Aligned_cols=38  Identities=32%  Similarity=0.709  Sum_probs=30.5

Q ss_pred             CCCcceeeccccC----cceecCCCCcccHhHHHHhhccCCCCc
Q 026563          137 REEECGICLEICC----KIVLPDCNHSMCMRCYRNWRARSQSCP  176 (237)
Q Consensus       137 ~~~~C~IC~~~~~----~~v~~~CgH~FC~~Ci~~w~~~~~~CP  176 (237)
                      .-..|+||+..|.    .|+.+.|||..|..|.+...  +.+||
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp   51 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP   51 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence            4467999987765    57889999999999998754  46777

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.82  E-value=0.62  Score=43.08  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=34.6

Q ss_pred             CCcceeeccccC---cceecCCCCcccHhHHHHhhcc---CCCCcccccc
Q 026563          138 EEECGICLEICC---KIVLPDCNHSMCMRCYRNWRAR---SQSCPFCRDS  181 (237)
Q Consensus       138 ~~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~---~~~CP~CR~~  181 (237)
                      -+.|||=.+.-.   .|+.+.|||+.+.+-+.+...+   +.+||.|=..
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e  383 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE  383 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence            367998777655   4788999999999999887662   4799999443

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.65  E-value=0.53  Score=30.80  Aligned_cols=42  Identities=19%  Similarity=0.529  Sum_probs=20.6

Q ss_pred             CcceeeccccCccee-cCCCCcccHhHHHHhhc-----cCCCCcccccc
Q 026563          139 EECGICLEICCKIVL-PDCNHSMCMRCYRNWRA-----RSQSCPFCRDS  181 (237)
Q Consensus       139 ~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~-----~~~~CP~CR~~  181 (237)
                      +.|++....+..|+. ..|.|.-|-+ +..|+.     ..-.||+|.++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence            579999998888766 6899986643 233443     34579999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=83.37  E-value=0.71  Score=46.07  Aligned_cols=26  Identities=23%  Similarity=0.585  Sum_probs=23.1

Q ss_pred             eecCCCCcccHhHHHHhhccCCCCcc
Q 026563          152 VLPDCNHSMCMRCYRNWRARSQSCPF  177 (237)
Q Consensus       152 v~~~CgH~FC~~Ci~~w~~~~~~CP~  177 (237)
                      +...|||..|.+|..+|+.....||.
T Consensus      1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhccccccccHHHHHHHHhcCCcCCC
Confidence            44679999999999999998889985

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.04  E-value=0.76  Score=40.99  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=22.3

Q ss_pred             CCCcccHhHHHHhhc-------------cCCCCccccccccc
Q 026563          156 CNHSMCMRCYRNWRA-------------RSQSCPFCRDSLRR  184 (237)
Q Consensus       156 CgH~FC~~Ci~~w~~-------------~~~~CP~CR~~~~~  184 (237)
                      |...-|.+|+.+|+.             ++.+||.||+.+.-
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            344568899988865             46799999999873

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=80.23  E-value=1.4  Score=39.80  Aligned_cols=57  Identities=5%  Similarity=-0.138  Sum_probs=43.3

Q ss_pred             ccccCCCccccCCCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccc
Q 026563          124 RMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSL  182 (237)
Q Consensus       124 ~~~~~~~~~~~~~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~  182 (237)
                      .+.+.+.....+-...+|-.|-+.....+..+|||. ||.+|..  ...+.+||.|....
T Consensus       329 l~~~~~~~~~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~  386 (394)
T KOG2113|consen  329 LEKREESPTNGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND  386 (394)
T ss_pred             chhccccccccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence            344444444555567899999998888888899996 9999977  56789999996544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-21
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-17
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	3e-11
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	3e-09
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-08
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	6e-08
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	9e-08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	5e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	6e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	8e-07
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	9e-07
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-06
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-06
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	5e-06
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	6e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	7e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	1e-05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-05
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	1e-05
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	5e-05
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	7e-05
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	8e-05
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	1e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	2e-04
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	4e-04
2ect_A	78	Ring finger protein 126; metal binding protein, st	6e-04
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	7e-04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	8e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	9e-04

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 85.5 bits (211), Expect = 3e-21
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 20/146 (13%)

Query: 78  TRERKASIKEFYGVIFPSLLQLQRGITDVEDKKQKEICDAKYKKKGRMDKGKLSEIDIER 137
             E   S K+F  +I     +L          +Q +    K + +       +++  +E 
Sbjct: 15  MEELNRSKKDFEAIIQAKNKEL----------EQTKEEKEKMQAQKEEVLSHMND-VLEN 63

Query: 138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIYTSED 197
           E +C IC E   + V  +C HS C  C   W  R   CP CR  ++      +       
Sbjct: 64  ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCINK 123

Query: 198 DIVDLASISRE---------NLKRLF 214
            + +L+S  +E           KRLF
Sbjct: 124 MVNNLSSEVKERRIVLIRERKAKRLF 149

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 73.6 bits (181), Expect = 1e-17
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187
            +  EEEC IC++    ++LP C HS C +C   W  R ++CP CR  +   N 
Sbjct: 11  QLTDEEECCICMDGRADLILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 61.3 bits (148), Expect = 3e-11
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 120 KKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFC 178
             K   ++ +L        + C IC E    + +  C H MC  C  +W  +  Q CPFC
Sbjct: 314 HIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFC 373

Query: 179 RDSLRRVNS 187
           R  ++    
Sbjct: 374 RCEIKGTEP 382

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 105 DVEDKKQKEICDAKYKKKGRMDKGKLSEIDIEREE-ECGICLEICCKIVLPDCNHSMCMR 163
           D  + K      A  K +          +    E  +C  C E+  + +   C H++C  
Sbjct: 18  DKSNAKLWNEVLASLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKD 77

Query: 164 C-YRNWRARSQSCPFCRDSLRR 184
           C  R++RA+  SCP CR  L R
Sbjct: 78  CLDRSFRAQVFSCPACRYDLGR 99

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.0 bits (122), Expect = 3e-09
 Identities = 14/52 (26%), Positives = 19/52 (36%)

Query: 131 SEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182
           +        EC ICL+ C   V   C H  C  C +      + C  CR  +
Sbjct: 8   NTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 107 EDKKQKEICDAKYKKKGRMDKGKLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRC-Y 165
           ED + +++ D   +    + +G      +E+   C  C E+  + V  +C H++C  C  
Sbjct: 50  EDCQNQKLWD---EVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQ 106

Query: 166 RNWRARSQSCPFCRDSLRR 184
           R+++A+  SCP CR  L +
Sbjct: 107 RSFKAQVFSCPACRHDLGQ 125

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 134 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187
           ++     C IC         + +C H+ C  C       S  CP C   + +   
Sbjct: 11  ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 124 RMDKGKLSEIDIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNW-RARSQSCPFCRDS 181
            MD+  +  I       C IC+E      + P C+   C  C R W   +   CP CR  
Sbjct: 10  HMDEQSVESIA--EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAP 67

Query: 182 LR 183
           L+
Sbjct: 68  LQ 69

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 47.8 bits (114), Expect = 9e-08
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 134 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN 186
            I+    CGIC E     +++P C+H+ C  C R + +    CP C  ++   +
Sbjct: 18  TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 131 SEIDIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQSCPFCRDSLR 183
             I    E +CGIC+EI  + V   CNH++C  C        S  CPFCR  + 
Sbjct: 8   DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 134 DIEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS 187
           ++     C +C         + +C HS C  C   +   S+ CP C   + +   
Sbjct: 11  ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRP 65

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 12/49 (24%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 138 EEECGICLEI----CCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182
              C ICLE          +  C H +   CY         CP C    
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSLRR 184
            +E + +C  C  + C     +C H  C  C      + S  C  C++S+ +
Sbjct: 11  TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.1 bits (107), Expect = 5e-07
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 136 EREEECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185
              E C ICLE      +   C H+ C  C   W  ++ +CP C+  +  V
Sbjct: 3   TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 140 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
            C IC +     V+  C H  C  C       +  C  C 
Sbjct: 17  RCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICD 56

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 44.5 bits (105), Expect = 8e-07
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 136 EREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQS--CPFCRDSL 182
           +  + C IC  +  +      C   M + C   +   +    CP C D  
Sbjct: 13  DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 44.1 bits (104), Expect = 9e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 131 SEIDIEREEECGICLE-------ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182
           + +       C IC++           IV  +C H  C +C R+    + +CP CR  +
Sbjct: 8   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 131 SEIDIEREEECGICLEICCKIVLPD-------CNHSMCMRCYRNWRARSQSCPFCRDSLR 183
           + +       C IC++   +IV          C H  C +C R+    + +CP CR  + 
Sbjct: 3   TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62

Query: 184 R 184
            
Sbjct: 63  H 63

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 131 SEIDIEREEECGICLE--ICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 185
           S + +   E C IC        IV     H   C  C +  + R++ CP CR  ++ +
Sbjct: 1   SSLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 134 DIEREEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWI 192
            +E+   C  C  I  + V L  C H  C  C  +       CP C          DL I
Sbjct: 18  RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDC--IGTGCPVCYTPAWI---QDLKI 72

Query: 193 YTSEDDIVDLASISRENLKR 212
               D ++ L S  R  L  
Sbjct: 73  NRQLDSMIQLCSKLRNLLHD 92

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ-----SCPFCRDSLRR 184
            I+ E  C ICLE+  + V  DCNHS C  C   N+ +        +CP CR     
Sbjct: 15  MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 136 EREEECGICLE--ICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV 185
              + C +C +      I+     H   C  C R  +    SCP C+  ++ V
Sbjct: 5   NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLV 57

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 134 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQ--SCPFCR 179
            I  E  C IC +I    +V+P C +S C  C R     S   +CP C 
Sbjct: 11  PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 129 KLSEIDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 182
            L    +E +  C  C  +  +     C H  C  C  +   +  Q+C  C    
Sbjct: 22  TLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ--SCPFCRDSLRR 184
            ++ E  C ICL+I  K V  DC H+ C++C  +          CP C+ S+R+
Sbjct: 16  KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 7/52 (13%)

Query: 140 ECGICLEICCKIVLPD-------CNHSMCMRCYRNWRARSQSCPFCRDSLRR 184
            C IC++   +IV          C H  C +C R+    + +CP CR  +  
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ--SCPFCRDSLRR 184
            +++  EC ICLE+  + V   C+H  C  C  +    +     CP C++ + +
Sbjct: 17  AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 138 EEECGICLEIC----CKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
            + C  C        C +V  +CNHS    C   W  ++  CP C+
Sbjct: 26  MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 134 DIEREEECGICLEICCKIV-LPDCNHSMCMRC-YRNWRARSQSCPFCRDSLRRVNS 187
            +  E  C ICL++    +   +C H  C  C     R+ ++ CP CR  L    S
Sbjct: 50  SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRS 105

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 131 SEIDIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQ--SCPFCR 179
            +  I  E  C IC +I    +V+P C +S C  C R     S   +CP C 
Sbjct: 6   EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 57

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 182
            +E + EC ICL    + V   C H  C  C     R     CP   + L
Sbjct: 14  PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 131 SEIDIEREE-ECGICLE-----ICCKIVLPDCNHSMCMRCYRNWRARSQ---SCPFCR 179
             +D  RE  EC IC+E          +L  C H++C +C     A S     CPFC 
Sbjct: 7   GNLDALREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCS 63

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 14/51 (27%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQSCPFCRDSLR 183
              +   C IC  I    V   C H  C  C  R  +     CP CR    
Sbjct: 19  HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ------SCPFCRDSLRR 184
           +++ E  C ICLE+  + +  DC HS+C  C   + +          SCP C  S   
Sbjct: 8   NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ-----SCPFCRDSLRR 184
           +++ E  C ICLE+  + +  DC HS C  C   N +         SCP CR S + 
Sbjct: 15  NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRA--RSQSCPFC 178
           +++ E  C +CLE   + V+ +C H+ C  C  R W    R   CP C
Sbjct: 11  NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 3/40 (7%)

Query: 140 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
            C  C        L  C H++C  C     A    CP C+
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTLCSGCL---EASGMQCPICQ 44

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQ--SCPFC 178
            ++ E  C ICL+I  K V  DC H+ C++C  +          CP C
Sbjct: 16  KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 182
            +E + EC ICL    + V   C H  C  C     R     CP   + L
Sbjct: 14  PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEIL 63

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 23/73 (31%)

Query: 130 LSEIDIEREEECGICLE------------------ICCKIVLPDCNHSMCMRCYRNWRAR 171
             E+ +  EE+C IC+E                        L  C+H+  + C       
Sbjct: 17  TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76

Query: 172 SQ-----SCPFCR 179
                   CP C+
Sbjct: 77  GNKDGSLQCPSCK 89

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 18/83 (21%)

Query: 136 EREEECGICLEIC----CKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNSGDL 190
           E   EC +C+E             C + +C  C+   R   +  CP CR           
Sbjct: 9   EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY-------- 60

Query: 191 WIYTSEDDIVDLASISRENLKRL 213
                 +D      +S+E L+R+
Sbjct: 61  -----PEDPAVYKPLSQEELQRI 78

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 131 SEIDIEREEECGICLE---ICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182
           +E  +    EC +C E   +   +  LP CNH     C   W  +  SCP CR SL
Sbjct: 8   TEEHVGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 127 KGKLSEIDIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182
            GK+ E++    E C +CLE         + P C H+   +C   W    + CP C   +
Sbjct: 6   SGKVKELN--LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

Query: 183 RRVNS 187
            ++  
Sbjct: 63  LQLAQ 67

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 138 EEECGICLEICCKIVLP-------DCNHSMCMRCYRNWRARSQSCPFCRDSLRR 184
              C IC++   +IV         +C H  C +C R+    + +CP CR  +  
Sbjct: 7   TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 35.7 bits (82), Expect = 9e-04
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 138 EEECGICLEIC-----CKIVLPDCNHSMCMRCY-RNWRARSQSCPFCRDSLRRVN 186
           ++ C  C          K+++  C H++C  C    +   + +CP C   LR+ N
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.46
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.44
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.42
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.41
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.4
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.39
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.39
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.39
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.39
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.38
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.38
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.38
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.38
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.37
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.36
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.36
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.36
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.35
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.35
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.35
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.34
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.33
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.33
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.33
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.32
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.32
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.31
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.3
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.3
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.3
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.3
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.3
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.29
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.27
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.27
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.27
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.27
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.27
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.25
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.23
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.21
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.2
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.19
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.17
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.17
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.17
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.16
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.16
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.12
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.12
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.12
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.09
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.07
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.05
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.01
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.0
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.97
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.97
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.88
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.87
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.86
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.85
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.8
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.73
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.7
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.6
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.38
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.35
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.21
3nw0_A	238	Non-structural maintenance of chromosomes element	97.45
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.19
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.87
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	93.07
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	85.92
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	83.67

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.46  E-value=1.9e-14  Score=100.05  Aligned_cols=56  Identities=25%  Similarity=0.662  Sum_probs=48.6

Q ss_pred             CCCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCCCCc
Q 026563          135 IEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDL  190 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~  190 (237)
                      .+++..|+||++.+.++       +.++|||.||..|+.+|+..+.+||+||.++...+...+
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence            34678999999999877       889999999999999999999999999999986555444

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=6.1e-14  Score=98.15  Aligned_cols=55  Identities=20%  Similarity=0.430  Sum_probs=48.0

Q ss_pred             cCCCCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccccCCC
Q 026563          134 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSG  188 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~  188 (237)
                      ..+++..|+||++.+.+++.+ +|||.||..||.+|+..+..||+||..+...++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            345678999999999999875 9999999999999999899999999999855443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.42  E-value=8.4e-14  Score=109.62  Aligned_cols=48  Identities=35%  Similarity=0.872  Sum_probs=44.9

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ++..|+||++.+.+|+.++|||.||..||..|+..+.+||+||.++..
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            457899999999999999999999999999999999999999999864

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.41  E-value=8.1e-14  Score=98.78  Aligned_cols=50  Identities=18%  Similarity=0.370  Sum_probs=46.0

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  184 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~  184 (237)
                      ..++..|+||++.+.+|+.++|||.||..||.+|+.. ..+||.||.++..
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            4567899999999999999999999999999999986 8899999999874

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.40  E-value=9.2e-14  Score=98.48  Aligned_cols=53  Identities=32%  Similarity=0.676  Sum_probs=46.8

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-------CCCCccccccccccC
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-------SQSCPFCRDSLRRVN  186 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-------~~~CP~CR~~~~~~~  186 (237)
                      ..+++..|+||++.+.+++.++|||.||..|+.+|+..       ...||.||..+....
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~   67 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH   67 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence            34567899999999999999999999999999999985       689999999987543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.39  E-value=5.6e-14  Score=95.45  Aligned_cols=51  Identities=27%  Similarity=0.727  Sum_probs=45.0

Q ss_pred             CCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563          137 REEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS  187 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~  187 (237)
                      ++..|+||++.+.++       +.++|||.||..|+.+|+..+.+||+||.++...+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   59 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY   59 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence            357899999999876       788999999999999999999999999999875443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-13  Score=96.19  Aligned_cols=50  Identities=28%  Similarity=0.692  Sum_probs=45.8

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ...+..|+||++.+.+++.++|||.||..|+.+|+.....||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence            34568899999999999999999999999999999988999999999874

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.8e-13  Score=94.03  Aligned_cols=51  Identities=24%  Similarity=0.663  Sum_probs=45.5

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~  184 (237)
                      ...++..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            3456789999999999999999999999999999994 67899999999874

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.4e-13  Score=94.92  Aligned_cols=52  Identities=35%  Similarity=0.804  Sum_probs=46.0

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCcccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFCRDSLRRV  185 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~CR~~~~~~  185 (237)
                      ..+++..|+||++.+.+++.++|||.||..|+.+|+.   ....||+||..+...
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            3456789999999999999999999999999999996   567999999998743

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.38  E-value=2.2e-13  Score=95.88  Aligned_cols=50  Identities=32%  Similarity=0.607  Sum_probs=44.4

Q ss_pred             cCCCCCcceeeccccCcceecC-CCCcccHhHHHHhhccC--CCCcccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRARS--QSCPFCRDSLR  183 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~-CgH~FC~~Ci~~w~~~~--~~CP~CR~~~~  183 (237)
                      ...++..|+||++.+.+|+.++ |||.||..||.+|+..+  ..||+||.++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            4456789999999999999999 99999999999999854  79999999754

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1.9e-13  Score=97.75  Aligned_cols=49  Identities=22%  Similarity=0.451  Sum_probs=45.5

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+....|+||++.+.++++++|||.||..|+.+|+.....||+||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            3456899999999999999999999999999999999999999999986

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=1e-13  Score=95.51  Aligned_cols=51  Identities=27%  Similarity=0.741  Sum_probs=45.3

Q ss_pred             cCCCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ....+..|+||++.+.++       +.++|||.||..|+.+|+..+..||+||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            345678999999999876       889999999999999999999999999998763

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.38  E-value=3.3e-13  Score=93.39  Aligned_cols=53  Identities=28%  Similarity=0.638  Sum_probs=44.9

Q ss_pred             CCCCCcceeeccccC---cceecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563          135 IEREEECGICLEICC---KIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS  187 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~---~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~  187 (237)
                      .+.+..|+||++.+.   .++.++|||.||..|+.+|+..+.+||+||..+....+
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            345678999999885   35778999999999999999988999999999875443

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.37  E-value=2.5e-13  Score=89.79  Aligned_cols=48  Identities=25%  Similarity=0.681  Sum_probs=41.8

Q ss_pred             CCCCcceeeccccCc---ceecC-CCCcccHhHHHHhhccCCCCcccccccc
Q 026563          136 EREEECGICLEICCK---IVLPD-CNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~---~v~~~-CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      +++.+|+||++.+.+   ++.++ |||.||..|+.+|+..+.+||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            456789999999886   55555 9999999999999999999999998764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.36  E-value=5.3e-14  Score=104.91  Aligned_cols=50  Identities=32%  Similarity=0.770  Sum_probs=45.0

Q ss_pred             CCCCcceeeccccCccee-cCCCCcccHhHHHHhhccC-CCCcccccccccc
Q 026563          136 EREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV  185 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~~  185 (237)
                      +++..|+||++.+.+|+. ++|||.||..||.+|+... ..||.||.++...
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            346789999999999999 9999999999999999976 7999999998643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=2.5e-13  Score=94.29  Aligned_cols=50  Identities=34%  Similarity=0.932  Sum_probs=45.3

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  185 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~  185 (237)
                      ...+..|+||++.+.+ +.++|||.||..|+.+|+.....||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            4567899999999999 8899999999999999999999999999998743

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.36  E-value=4.7e-13  Score=95.66  Aligned_cols=52  Identities=37%  Similarity=0.657  Sum_probs=46.4

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc------CCCCcccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRV  185 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~~~~~  185 (237)
                      ....+..|+||++.+.+++.++|||.||..|+..|+..      ...||.||..+...
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            34567899999999999999999999999999999886      78999999998743

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.35  E-value=1.6e-13  Score=103.38  Aligned_cols=52  Identities=21%  Similarity=0.570  Sum_probs=46.9

Q ss_pred             cCCCCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCcccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRV  185 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~  185 (237)
                      ....+..|+||++.+.+++.+ +|||.||..|+..|+..+..||.||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            345678999999999999886 9999999999999999899999999998754

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=4.5e-13  Score=96.68  Aligned_cols=53  Identities=32%  Similarity=0.685  Sum_probs=46.3

Q ss_pred             ccCCCCCcceeeccccCc----ceecCCCCcccHhHHHHhhccC---CCCcccccccccc
Q 026563          133 IDIEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRV  185 (237)
Q Consensus       133 ~~~~~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~---~~CP~CR~~~~~~  185 (237)
                      ...+++..|+||++.+.+    ++.++|||.||..|+.+|+...   ..||+||..+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            345667899999999998    8999999999999999999865   8999999988643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=5.5e-13  Score=95.30  Aligned_cols=55  Identities=35%  Similarity=0.735  Sum_probs=47.7

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc------CCCCccccccccccCCC
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR------SQSCPFCRDSLRRVNSG  188 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~------~~~CP~CR~~~~~~~~~  188 (237)
                      ....+..|+||++.+.+++.++|||.||..|+..|+..      ...||.||..+......
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~   75 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR   75 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence            34567899999999999999999999999999999876      88999999998854333

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.34  E-value=5e-13  Score=94.67  Aligned_cols=54  Identities=31%  Similarity=0.598  Sum_probs=45.5

Q ss_pred             cCCCCCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563          134 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS  187 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~  187 (237)
                      ....+..|+||++.+..+   ..++|||.||..|+.+|+..+.+||+||..+...+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            345678999999998754   557899999999999999988999999999875443

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.33  E-value=4.1e-13  Score=88.62  Aligned_cols=47  Identities=26%  Similarity=0.592  Sum_probs=42.1

Q ss_pred             CCCcceeeccccCc----ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          137 REEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+..|+||++.+.+    ++.++|||.||..|+.+|+....+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            46789999999865    678999999999999999998899999998864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.33  E-value=6.1e-13  Score=96.44  Aligned_cols=51  Identities=18%  Similarity=0.042  Sum_probs=47.0

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ....++.|+||++.+.+||.++|||+||+.||.+|+....+||+||.++..
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            345689999999999999999999999999999999988999999999874

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.33  E-value=6.8e-13  Score=97.18  Aligned_cols=49  Identities=29%  Similarity=0.621  Sum_probs=43.6

Q ss_pred             CCCCCcceeeccccCc---ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          135 IEREEECGICLEICCK---IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+.+..|+||++.+..   ++.++|||.||..||.+|+..+.+||+||..+.
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~   88 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP   88 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence            3466889999999876   677889999999999999999999999999875

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.32  E-value=6.3e-13  Score=91.60  Aligned_cols=48  Identities=29%  Similarity=0.783  Sum_probs=43.6

Q ss_pred             CCCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      .+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            457899999999885 789999999999999999989999999999873

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.32  E-value=7.1e-13  Score=96.79  Aligned_cols=50  Identities=30%  Similarity=0.594  Sum_probs=44.3

Q ss_pred             cCCCCCcceeeccccCcceecC-CCCcccHhHHHHhhcc--CCCCcccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR--SQSCPFCRDSLR  183 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~-CgH~FC~~Ci~~w~~~--~~~CP~CR~~~~  183 (237)
                      ...++..|+||++.+.+|+.++ |||.||..||.+|+..  ...||.||.++.
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            4567799999999999999999 9999999999999873  469999999873

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.7e-13  Score=94.23  Aligned_cols=48  Identities=23%  Similarity=0.639  Sum_probs=43.0

Q ss_pred             CCCCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          136 EREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      +.+..|+||++.+..+   +.++|||.||..|+.+|+..+.+||+||..+.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~   71 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG   71 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence            4567899999998865   66889999999999999999999999999886

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.30  E-value=1.2e-12  Score=97.83  Aligned_cols=51  Identities=18%  Similarity=0.055  Sum_probs=47.0

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ....++.|+||++.+.+||.++|||+||+.||.+|+....+||+||.++..
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            345679999999999999999999999999999999988999999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.1e-12  Score=91.99  Aligned_cols=51  Identities=24%  Similarity=0.636  Sum_probs=43.5

Q ss_pred             cCCCCCcceeeccccCcc---eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKI---VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~---v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +...+..|+||++.+..+   ..++|||.||..|+.+|+....+||+||.++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            345678999999998764   334899999999999999988899999999864

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.30  E-value=8.3e-13  Score=90.42  Aligned_cols=51  Identities=24%  Similarity=0.554  Sum_probs=42.7

Q ss_pred             CCcceeecc-ccCcc----eecCCCCcccHhHHHHhhc-cCCCCccccccccccCCC
Q 026563          138 EEECGICLE-ICCKI----VLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVNSG  188 (237)
Q Consensus       138 ~~~C~IC~~-~~~~~----v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~~~  188 (237)
                      +..|+||++ .+.++    +.++|||.||..|+.+|+. ....||.||.++...+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~   59 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFR   59 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCE
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccce
Confidence            578999999 78776    4689999999999999965 567899999999755443

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.30  E-value=5e-13  Score=103.11  Aligned_cols=49  Identities=31%  Similarity=0.651  Sum_probs=44.0

Q ss_pred             CCCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~  184 (237)
                      +.+..|+||++.+.+|+.++|||.||..|+..|+. ....||.||.++..
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            45688999999999999999999999999999997 45599999999874

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=88.59  Aligned_cols=45  Identities=36%  Similarity=0.841  Sum_probs=40.7

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhc---cCCCCccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA---RSQSCPFC  178 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~---~~~~CP~C  178 (237)
                      ..+++..|+||++.+.+++.++|||.||..|+.+|+.   ....||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4466789999999999999999999999999999997   56799998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.29  E-value=7.6e-13  Score=98.08  Aligned_cols=48  Identities=27%  Similarity=0.703  Sum_probs=44.3

Q ss_pred             CCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ++..|+||++.+.+++.+ +|||.||..|+.+|+.....||.||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            457899999999999876 899999999999999989999999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.27  E-value=1.8e-12  Score=98.23  Aligned_cols=48  Identities=29%  Similarity=0.626  Sum_probs=41.1

Q ss_pred             CCCcceeeccccCcce------------------ecCCCCcccHhHHHHhh-----ccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIV------------------LPDCNHSMCMRCYRNWR-----ARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v------------------~~~CgH~FC~~Ci~~w~-----~~~~~CP~CR~~~~~  184 (237)
                      .+..|+||++.+.++.                  +++|||.||..||.+|+     ..+.+||+||..+..
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            4568999999986543                  78999999999999999     457899999998863

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.3e-12  Score=93.72  Aligned_cols=48  Identities=27%  Similarity=0.702  Sum_probs=40.8

Q ss_pred             CCCcceeeccccCc--------------c-eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCK--------------I-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~--------------~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ++..|+||++.+.+              + ++++|||.||..||.+|+..+.+||+||.++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            45679999998864              3 445699999999999999999999999998763

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.27  E-value=2.6e-12  Score=95.65  Aligned_cols=51  Identities=20%  Similarity=0.134  Sum_probs=46.9

Q ss_pred             cCCCCCcceeeccccCcceecCCC-CcccHhHHHHhhccCCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ...+++.|+||++.+.+||.++|| |.||+.||.+|+....+||+||.++..
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            345679999999999999999999 999999999999988999999999874

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.9e-12  Score=84.70  Aligned_cols=45  Identities=33%  Similarity=0.959  Sum_probs=39.9

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhh---ccCCCCccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWR---ARSQSCPFC  178 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~---~~~~~CP~C  178 (237)
                      ...++..|+||++.+.+++.++|||.||..|+.+|+   .....||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345678999999999999999999999999999994   467899998

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.27  E-value=4.2e-12  Score=95.66  Aligned_cols=51  Identities=27%  Similarity=0.709  Sum_probs=44.4

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhccC---CCCccccccccccCC
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNS  187 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~---~~CP~CR~~~~~~~~  187 (237)
                      ....|+||++.+.+++.++|||.||..|+.+|+...   ..||.||.++.....
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   73 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence            346899999999999999999999999999999854   489999999875443

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.25  E-value=1.7e-12  Score=100.07  Aligned_cols=58  Identities=26%  Similarity=0.677  Sum_probs=49.7

Q ss_pred             CCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCCCCcccc
Q 026563          136 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSGDLWIY  193 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~~~~~~  193 (237)
                      .++..|+||++.+.++       +.++|||.||..||.+|+....+||+||..+.......++..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~   69 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG   69 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence            3568999999999887       889999999999999999999999999999986555544443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.23  E-value=1.1e-12  Score=99.78  Aligned_cols=50  Identities=38%  Similarity=0.883  Sum_probs=44.9

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  184 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~  184 (237)
                      ..++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||+||..+..
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3456889999999999999999999999999999985 7899999999873

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.21  E-value=2e-12  Score=103.36  Aligned_cols=51  Identities=29%  Similarity=0.637  Sum_probs=45.1

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhccC-CCCcccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRRV  185 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~~  185 (237)
                      ...+..|+||++.+.+|+.++|||.||..||..|+... ..||+||..+...
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            34568999999999999999999999999999999854 4899999998743

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.20  E-value=4.4e-12  Score=97.04  Aligned_cols=51  Identities=27%  Similarity=0.558  Sum_probs=45.4

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccC-CCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~~  184 (237)
                      ..+.+..|+||++.+.+|+.++|||.||..|+.+|+... ..||+||.++..
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            456678999999999999999999999999999999855 499999998863

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.19  E-value=1.7e-11  Score=87.43  Aligned_cols=52  Identities=27%  Similarity=0.593  Sum_probs=42.0

Q ss_pred             CCCCCcceeeccccC--cceecC--CCCcccHhHHHHhhc-cCCCCccccccccccC
Q 026563          135 IEREEECGICLEICC--KIVLPD--CNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN  186 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~--~~v~~~--CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~  186 (237)
                      .+++..|+||++.+.  ++...+  |||.||..|+.+++. ....||.||.++...+
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            456789999999885  344544  999999999999764 5789999999997543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.17  E-value=5e-12  Score=102.12  Aligned_cols=49  Identities=29%  Similarity=0.697  Sum_probs=43.9

Q ss_pred             CCCCCcceeeccccCcceec-CCCCcccHhHHHHhhcc-CCCCcccccccc
Q 026563          135 IEREEECGICLEICCKIVLP-DCNHSMCMRCYRNWRAR-SQSCPFCRDSLR  183 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~  183 (237)
                      ...+..|+||++.+.+++.+ +|||.||..|+..|+.. ...||+||.++.
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            34567999999999999876 99999999999999986 889999999985

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.17  E-value=4.8e-12  Score=96.35  Aligned_cols=49  Identities=27%  Similarity=0.517  Sum_probs=44.6

Q ss_pred             CCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~  184 (237)
                      .++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||.++..
T Consensus        21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            346789999999999999999999999999999985 7899999999874

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=4.8e-12  Score=96.71  Aligned_cols=46  Identities=24%  Similarity=0.575  Sum_probs=42.3

Q ss_pred             CCCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ++..|+||++.+.+|+.+ +|||.||..||..|+.  ..||.||.++..
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence            468899999999999998 9999999999999987  899999999864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=8.7e-12  Score=83.15  Aligned_cols=46  Identities=22%  Similarity=0.464  Sum_probs=40.9

Q ss_pred             CCCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      .++..|+||++.+.+|+.++|||.||..|+..|   ...||+||..+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeec
Confidence            356889999999999999999999999999874   6799999998863

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.16  E-value=1.4e-11  Score=92.91  Aligned_cols=47  Identities=23%  Similarity=0.613  Sum_probs=41.3

Q ss_pred             CCCcceeeccccCcc------------------eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          137 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~------------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+..|+||++.+.++                  +.++|||.||..||.+|+..+.+||+||..+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            457899999998753                  45799999999999999999999999999864

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.15  E-value=8.5e-12  Score=98.72  Aligned_cols=50  Identities=20%  Similarity=0.484  Sum_probs=44.8

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhccC-CCCcccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS-QSCPFCRDSLR  183 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~-~~CP~CR~~~~  183 (237)
                      ..+.+..|+||++.+.+|+.++|||.||..||.+|+... ..||.||.++.
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            456778999999999999999999999999999999854 59999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.12  E-value=3.5e-11  Score=103.74  Aligned_cols=52  Identities=15%  Similarity=0.102  Sum_probs=45.5

Q ss_pred             ccCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563          133 IDIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  184 (237)
Q Consensus       133 ~~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~  184 (237)
                      .+...++.|+||++.+.+||+++|||+||..||.+|+.. ..+||+||.+++.
T Consensus       203 ~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          203 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            344567899999999999999999999999999999985 4559999999863

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.12  E-value=9.9e-12  Score=95.80  Aligned_cols=53  Identities=26%  Similarity=0.702  Sum_probs=46.5

Q ss_pred             CCCCcceeeccccCcc-------eecCCCCcccHhHHHHhhccCCCCccccccccccCCC
Q 026563          136 EREEECGICLEICCKI-------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNSG  188 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~-------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~~  188 (237)
                      +....|+||++.+.++       +.++|||.||..|+.+|+..+.+||+||.++......
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~  129 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH  129 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcce
Confidence            4568899999999876       8889999999999999999999999999998755443

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.12  E-value=1.3e-11  Score=84.62  Aligned_cols=49  Identities=24%  Similarity=0.604  Sum_probs=43.8

Q ss_pred             CCCCcceeeccccCcceec--CCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~--~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +++..|.||++...+++.+  +|||. ||..|+..|...+..||+||.++..
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   57 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM   57 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence            3457899999999999876  99999 8999999999988999999999863

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.09  E-value=1.9e-11  Score=86.04  Aligned_cols=44  Identities=30%  Similarity=0.745  Sum_probs=40.5

Q ss_pred             CCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ++..|+||++.+.+++.++|||. ||..|+..|    ..||+||.++..
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            34689999999999999999999 999999998    899999999874

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.07  E-value=2.9e-11  Score=82.62  Aligned_cols=48  Identities=21%  Similarity=0.542  Sum_probs=42.9

Q ss_pred             CCCcceeeccccCcceec--CCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVLP--DCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~--~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      .+..|.||++...+++++  +|||. ||..|+.+|...+..||+||.++..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence            457899999999988776  99998 9999999999888999999999863

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=4.1e-11  Score=88.25  Aligned_cols=48  Identities=23%  Similarity=0.340  Sum_probs=42.0

Q ss_pred             CCCCcceeeccccCcceecC-CCCcccHhHHHHhhcc------CCCCcc--cccc-cc
Q 026563          136 EREEECGICLEICCKIVLPD-CNHSMCMRCYRNWRAR------SQSCPF--CRDS-LR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~-CgH~FC~~Ci~~w~~~------~~~CP~--CR~~-~~  183 (237)
                      ..++.|+||++.+.+||.++ |||+||..||.+|+..      ..+||+  |+.. +.
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            46789999999999999985 9999999999999974      369999  9876 55

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.05  E-value=6.8e-11  Score=107.52  Aligned_cols=49  Identities=33%  Similarity=0.845  Sum_probs=44.9

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCcccccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  185 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~  185 (237)
                      ....|+||++.+.+++.++|||.||..|+..|.. ....||+||.++...
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            3478999999999999999999999999999998 789999999998753

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.01  E-value=1.1e-10  Score=95.90  Aligned_cols=51  Identities=14%  Similarity=0.097  Sum_probs=45.4

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~  184 (237)
                      ....++.|+||++.+.+||.++|||+||..||..|+.. ..+||+||.++..
T Consensus       102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            44577999999999999999999999999999999985 3579999998874

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.00  E-value=1.1e-10  Score=94.60  Aligned_cols=51  Identities=27%  Similarity=0.553  Sum_probs=45.5

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRR  184 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~  184 (237)
                      ..++++.|+||++.+.+|+.++|||.||..|+.+|+.. ..+||.||.++..
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            45677899999999999999999999999999999974 4599999998864

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=1.1e-10  Score=82.34  Aligned_cols=43  Identities=30%  Similarity=0.760  Sum_probs=38.7

Q ss_pred             CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +..|+||++.+.+++.++|||. ||..|+...    ..||+||.++..
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence            4679999999999999999999 999999653    899999999874

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.97  E-value=6.4e-11  Score=90.83  Aligned_cols=47  Identities=23%  Similarity=0.613  Sum_probs=0.9

Q ss_pred             CCCcceeeccccCcc------------------eecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          137 REEECGICLEICCKI------------------VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~------------------v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+..|+||++.+.++                  +.++|+|.||..||.+|+..+.+||+||.++.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             CC---------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            357899999998752                  23589999999999999999999999999864

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.88  E-value=9.2e-10  Score=76.28  Aligned_cols=45  Identities=31%  Similarity=0.804  Sum_probs=40.3

Q ss_pred             CCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +++..|.||++...++++++|||. ||..|+..    ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            456789999999999999999999 99999985    4899999999874

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.87  E-value=3.8e-10  Score=80.50  Aligned_cols=44  Identities=32%  Similarity=0.709  Sum_probs=39.8

Q ss_pred             CCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCcccccccccc
Q 026563          138 EEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRRV  185 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~~  185 (237)
                      +..|.||++.+.+++.++|||. ||..|+..|    ..||+||.++...
T Consensus        18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            4689999999999999999999 999999987    4999999998753

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.1e-09  Score=78.41  Aligned_cols=48  Identities=21%  Similarity=0.583  Sum_probs=40.4

Q ss_pred             CCCCcceeeccccC--cceecCCC-----CcccHhHHHHhhccC--CCCcccccccc
Q 026563          136 EREEECGICLEICC--KIVLPDCN-----HSMCMRCYRNWRARS--QSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~--~~v~~~Cg-----H~FC~~Ci~~w~~~~--~~CP~CR~~~~  183 (237)
                      ..+..|.||++.+.  ++++++|+     |.||..||.+|+..+  .+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            45678999998774  45678896     999999999999854  69999999886

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.85  E-value=9.3e-10  Score=94.88  Aligned_cols=52  Identities=19%  Similarity=0.337  Sum_probs=44.5

Q ss_pred             cCCCCCcceeeccccCccee-cCCCCcccHhHHHHhhcc--CCCCcc--cccccccc
Q 026563          134 DIEREEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPF--CRDSLRRV  185 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~--~~~CP~--CR~~~~~~  185 (237)
                      ....+..|+||++.|.+||. ..|||+||+.||..|+..  ...||.  ||..+...
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR  233 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence            34566899999999999998 499999999999999874  368999  99987643

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=4.7e-09  Score=73.96  Aligned_cols=48  Identities=21%  Similarity=0.515  Sum_probs=40.4

Q ss_pred             CCCcceeeccccCcce-ecCCCCcccHhHHHHhhccC--CCCccccccccc
Q 026563          137 REEECGICLEICCKIV-LPDCNHSMCMRCYRNWRARS--QSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v-~~~CgH~FC~~Ci~~w~~~~--~~CP~CR~~~~~  184 (237)
                      ....|+||.+.+.... -..|+|.||..||.+|+..+  .+||+||.....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            4478999999988543 35899999999999999966  899999988763

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.73  E-value=2.3e-09  Score=72.74  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=44.3

Q ss_pred             CCcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccccCC
Q 026563          138 EEECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVNS  187 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~~  187 (237)
                      .+.|+||.+.+.+|+.+ +|||.|++.||.+|+..+.+||+++.++...+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L   53 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   53 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence            36799999999999998 999999999999999987889999999875433

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.70  E-value=1.9e-09  Score=96.92  Aligned_cols=45  Identities=27%  Similarity=0.846  Sum_probs=41.2

Q ss_pred             CCCCcceeeccccCcceecCCCCc-ccHhHHHHhhccCCCCccccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCNHS-MCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~CgH~-FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +++..|+||++.+.+++.++|||. ||..|+..|    ..||+||.++..
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            356789999999999999999999 999999988    799999999874

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.60  E-value=1.3e-08  Score=74.38  Aligned_cols=45  Identities=22%  Similarity=0.592  Sum_probs=37.0

Q ss_pred             CCCcceeeccccCccee---cCCCCcccHhHHHHhhcc--------CCCCcc--cccc
Q 026563          137 REEECGICLEICCKIVL---PDCNHSMCMRCYRNWRAR--------SQSCPF--CRDS  181 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~---~~CgH~FC~~Ci~~w~~~--------~~~CP~--CR~~  181 (237)
                      ....|+||++.+..+..   .+|||.||..|+..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            46789999999887643   379999999999998761        358999  9987

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.38  E-value=6.2e-08  Score=86.38  Aligned_cols=48  Identities=25%  Similarity=0.599  Sum_probs=39.0

Q ss_pred             CCCCcceeeccccCc-ce-------ecCCCCcccHhHHHHhhccC-----------CCCcccccccc
Q 026563          136 EREEECGICLEICCK-IV-------LPDCNHSMCMRCYRNWRARS-----------QSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~-~v-------~~~CgH~FC~~Ci~~w~~~~-----------~~CP~CR~~~~  183 (237)
                      +...+|+||++.+.+ ..       .+.|||.||..|+.+|+...           ..||.||.+++
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            355789999998876 21       24799999999999999732           58999999886

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.35  E-value=2.8e-07  Score=62.13  Aligned_cols=48  Identities=23%  Similarity=0.510  Sum_probs=39.4

Q ss_pred             CCCCcceeeccccCcceecCCC--C---cccHhHHHHhhc--cCCCCcccccccc
Q 026563          136 EREEECGICLEICCKIVLPDCN--H---SMCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~Cg--H---~FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      +.+..|.||++...++.+.||.  |   .||..|+.+|+.  ++.+||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            4567899999876666667865  4   799999999987  4789999998875

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.21  E-value=5.1e-07  Score=66.52  Aligned_cols=47  Identities=23%  Similarity=0.494  Sum_probs=39.2

Q ss_pred             cceeeccccCc-ceecCCCCcccHhHHHHhhc-cCCCCccccccccccC
Q 026563          140 ECGICLEICCK-IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN  186 (237)
Q Consensus       140 ~C~IC~~~~~~-~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~  186 (237)
                      .|++|--++.. ....||+|.||.+|+..|.+ ..++||.|+.++.++.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe   51 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE   51 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence            58888877775 46688999999999999975 6799999999987543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.45  E-value=8.4e-05  Score=63.30  Aligned_cols=47  Identities=21%  Similarity=0.521  Sum_probs=39.0

Q ss_pred             CCcceeeccccCccee-cCCCCcccHhHHHHhhcc--CCCCccccccccc
Q 026563          138 EEECGICLEICCKIVL-PDCNHSMCMRCYRNWRAR--SQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~--~~~CP~CR~~~~~  184 (237)
                      -..|.||.+....... .+|+|.||..|+..|+..  +..||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            5689999998886543 569999999999999874  4599999887653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.19  E-value=0.0016  Score=47.40  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=27.0

Q ss_pred             CCCcceeeccc-cCccee--cCCCCcccHhHHHHh
Q 026563          137 REEECGICLEI-CCKIVL--PDCNHSMCMRCYRNW  168 (237)
Q Consensus       137 ~~~~C~IC~~~-~~~~v~--~~CgH~FC~~Ci~~w  168 (237)
                      ++..|+||.+. +.+++.  +.|+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            35789999975 667777  899999999999983

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=93.07  E-value=0.06  Score=53.88  Aligned_cols=52  Identities=15%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             cCCCCCcceeeccccCcceecCCC-CcccHhHHHHhhccCCCCcccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCN-HSMCMRCYRNWRARSQSCPFCRDSLRRV  185 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~Cg-H~FC~~Ci~~w~~~~~~CP~CR~~~~~~  185 (237)
                      +.-++..|||-.+.+.+||+++-| +++-+.+|.+|+..+.+||+=|.+++..
T Consensus       887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~  939 (968)
T 3m62_A          887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE  939 (968)
T ss_dssp             CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence            345678999999999999999998 5899999999999899999999988743

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=85.92  E-value=0.59  Score=32.79  Aligned_cols=43  Identities=26%  Similarity=0.498  Sum_probs=32.1

Q ss_pred             CCCCcceeeccccCcceecCC----CCcccHhHHHHhhc-----cCCCCccc
Q 026563          136 EREEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA-----RSQSCPFC  178 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~C----gH~FC~~Ci~~w~~-----~~~~CP~C  178 (237)
                      ...+.|.+|.+.+++.-...|    +|.||.-|-+..++     ....||.-
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG   64 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   64 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence            456899999999998644444    68999999988876     24455544

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=83.67  E-value=0.95  Score=30.34  Aligned_cols=46  Identities=17%  Similarity=0.408  Sum_probs=32.1

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhc----cCCCCccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA----RSQSCPFCRDSL  182 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~----~~~~CP~CR~~~  182 (237)
                      ....|.||.+.-.-..--.|...||..|+...+.    ..=.||.|+...
T Consensus        11 ~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            4567999986433222246888999999987665    345899997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-09
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	5e-09
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-07
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-06
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	5e-06
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	6e-05
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-04
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	0.002
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	0.004

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 4e-09
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 139 EECGICLEICCKIVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSLRRVNS 187
           + C IC E    + +  C H MC  C  +W  +  Q CPFCR  ++    
Sbjct: 24  QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.2 bits (117), Expect = 5e-09
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 139 EECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRRV 185
           E C ICLE      +   C H+ C  C   W  ++ +CP C+  +  V
Sbjct: 6   ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 47.9 bits (114), Expect = 1e-08
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 135 IEREEECGICLEICCK----IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSL 182
           ++   EC +CL           LP C H     C   W     +CP CR ++
Sbjct: 2   MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 14/52 (26%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRC-YRNWRARSQSCPFCRDSLRR 184
              +   C IC  I    V   C H  C  C  R  +     CP CR     
Sbjct: 19  HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 9e-07
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQ---SCPFCRDSLRR 184
            +++  EC ICLE+  + V   C+H  C  C      + +    CP C++ + +
Sbjct: 17  AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 3/44 (6%)

Query: 140 ECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183
            C  C        L  C H++C  C          CP C+    
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 5e-06
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 138 EEECGICLEIC-----CKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN 186
           ++ C  C          K+++  C H++C  C        + +CP C   LR+ N
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 15/60 (25%), Gaps = 18/60 (30%)

Query: 138 EEECGICLEIC------------------CKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
            + C IC                      C +    CNH+    C   W    Q CP   
Sbjct: 21  VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 6e-05
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 122 KGRMDKGKLSEIDIEREEECGICLE-ICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRD 180
           +G     + +   +E+   C  C   +   + L  C H  C  C  +       CP C  
Sbjct: 6   RGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDC--IGTGCPVCY- 62

Query: 181 SLRRVNSGDLWIYTSEDDIVDLASISRENLK 211
                   DL I    D ++ L S  R  L 
Sbjct: 63  --TPAWIQDLKINRQLDSMIQLCSKLRNLLH 91

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 6/46 (13%), Positives = 11/46 (23%)

Query: 134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
           +      C I LE+    V+     +      + W           
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKS 49

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.9 bits (82), Expect = 2e-04
 Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 141 CGICLEI-CCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR 183
           C I  ++    ++ P             +   + + P   + L 
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 46

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 23/73 (31%)

Query: 130 LSEIDIEREEECGICLEICC------------------KIVLPDCNHSMCMRCYRNWRAR 171
             E+ +  EE+C IC+E                        L  C+H+  + C       
Sbjct: 17  TEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76

Query: 172 SQ-----SCPFCR 179
                   CP C+
Sbjct: 77  GNKDGSLQCPSCK 89

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.002
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)

Query: 140 ECGICLEICCK----IVLPDCNHSMCMRCYRNW-RARSQSCPFCRDSL 182
           EC +C+E             C + +C  C+       +  CP CR   
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 134 DIEREEECGICLEICCK-IVLPDCNHSMCMRCYRNWRARSQSCPFCR 179
           D   E    I   + C  +VLP    ++            Q+ PF R
Sbjct: 18  DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNR 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.45
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.43
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.42
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.38
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.33
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.33
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.32
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.32
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.31
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.29
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.25
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.2
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.18
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.08
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.95
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.4
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	88.84
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	87.05
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	82.54

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.45  E-value=1.7e-14  Score=94.81  Aligned_cols=47  Identities=30%  Similarity=0.811  Sum_probs=40.6

Q ss_pred             CCCCcceeeccccCc---c-eecCCCCcccHhHHHHhhccCCCCccccccc
Q 026563          136 EREEECGICLEICCK---I-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSL  182 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~---~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~  182 (237)
                      +++.+|+||++.+.+   . .+++|||.||..|+.+|+..+.+||+||.++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            456789999999974   2 3457999999999999999999999999876

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.6e-14  Score=100.71  Aligned_cols=49  Identities=33%  Similarity=0.852  Sum_probs=43.9

Q ss_pred             CCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccccC
Q 026563          138 EEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN  186 (237)
Q Consensus       138 ~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~  186 (237)
                      ...|+||++.+.++++++|||.||..|+.+|+. ++.+||+||..+....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            356999999999999999999999999999997 5678999999998543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.43  E-value=2.7e-14  Score=97.77  Aligned_cols=47  Identities=30%  Similarity=0.814  Sum_probs=42.1

Q ss_pred             CCcceeeccccCcc-eecCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          138 EEECGICLEICCKI-VLPDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       138 ~~~C~IC~~~~~~~-v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      ..+|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            46799999999765 558999999999999999999999999998863

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.5e-14  Score=103.59  Aligned_cols=49  Identities=27%  Similarity=0.532  Sum_probs=44.0

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCcccccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRV  185 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~  185 (237)
                      .+..|+||++.+.+|+.++|||.||..||.+|+. +..+||.||.++...
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            4578999999999999999999999999999987 567899999988643

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.5e-14  Score=103.31  Aligned_cols=51  Identities=27%  Similarity=0.709  Sum_probs=44.0

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhccC---CCCccccccccccCC
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARS---QSCPFCRDSLRRVNS  187 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~---~~CP~CR~~~~~~~~  187 (237)
                      +.+.|+||++.+.+|+.++|||.||..|+.+|+...   ..||.||.++.....
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l   73 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL   73 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhC
Confidence            347899999999999999999999999999998743   589999999875443

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.1e-13  Score=91.13  Aligned_cols=48  Identities=13%  Similarity=0.146  Sum_probs=43.1

Q ss_pred             CcceeeccccCcceec-CCCCcccHhHHHHhhccCCCCccccccccccC
Q 026563          139 EECGICLEICCKIVLP-DCNHSMCMRCYRNWRARSQSCPFCRDSLRRVN  186 (237)
Q Consensus       139 ~~C~IC~~~~~~~v~~-~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~~~  186 (237)
                      +.|+||++.+.+|+.+ .|||.||.+||.+|+..+.+||+||.++...+
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~d   49 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   49 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHh
Confidence            3699999999999875 69999999999999999999999999987543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.8e-13  Score=92.83  Aligned_cols=50  Identities=24%  Similarity=0.643  Sum_probs=40.4

Q ss_pred             CCCcceeeccccCc-----ceecCCCCcccHhHHHHhhc-cCCCCccccccccccC
Q 026563          137 REEECGICLEICCK-----IVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRRVN  186 (237)
Q Consensus       137 ~~~~C~IC~~~~~~-----~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~~~  186 (237)
                      ++..|+||++.+..     .++++|||.||..||.+|+. .+.+||+||.+++..+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            35789999986531     35678999999999999986 5678999999987544

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.32  E-value=3e-13  Score=94.73  Aligned_cols=52  Identities=17%  Similarity=0.374  Sum_probs=46.0

Q ss_pred             cCCCCCcceeeccccCcceecCCCCcccHhHHHHhhcc-CCCCcccccccccc
Q 026563          134 DIEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLRRV  185 (237)
Q Consensus       134 ~~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~~~  185 (237)
                      +..+++.|+||++.+.+|+.++|||+||+.||.+|+.. ...||.|+.++...
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            34578999999999999999999999999999999974 57899999988743

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=2.9e-13  Score=95.25  Aligned_cols=50  Identities=12%  Similarity=0.046  Sum_probs=44.8

Q ss_pred             CCCCCcceeeccccCcceecCCCCcccHhHHHHhhc-cCCCCccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNHSMCMRCYRNWRA-RSQSCPFCRDSLRR  184 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~-~~~~CP~CR~~~~~  184 (237)
                      +.+++.|+||++.+.+|+.++|||+||..||.+|+. ....||.||.++..
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            346789999999999999999999999999999987 56789999998763

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-13  Score=87.27  Aligned_cols=45  Identities=27%  Similarity=0.654  Sum_probs=38.2

Q ss_pred             CcceeeccccCc----ceecCCCCcccHhHHHHhhcc-CCCCcccccccc
Q 026563          139 EECGICLEICCK----IVLPDCNHSMCMRCYRNWRAR-SQSCPFCRDSLR  183 (237)
Q Consensus       139 ~~C~IC~~~~~~----~v~~~CgH~FC~~Ci~~w~~~-~~~CP~CR~~~~  183 (237)
                      .+|+||++.+..    +..++|||.||..|+.+|+.. +.+||+||.++.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCC
Confidence            479999998863    345689999999999999984 568999999886

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.1e-13  Score=89.80  Aligned_cols=44  Identities=23%  Similarity=0.531  Sum_probs=40.0

Q ss_pred             CCCcceeeccccCcceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          137 REEECGICLEICCKIVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      +.++|+||++.+.++++++|||.||..|+.+|   +.+||+||.++.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC---CCcCcCCCCccc
Confidence            45799999999999999999999999999876   678999999986

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.6e-13  Score=97.10  Aligned_cols=46  Identities=24%  Similarity=0.580  Sum_probs=40.2

Q ss_pred             CCCcceeeccccCccee-cCCCCcccHhHHHHhhccCCCCccccccccc
Q 026563          137 REEECGICLEICCKIVL-PDCNHSMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~-~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      +.+.|+||++.+.+|+. ++|||.||..||.+|+.  ..||.||.++..
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             hcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh--ccccccCCcCch
Confidence            45789999999999986 58999999999999985  469999988764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.6e-12  Score=91.24  Aligned_cols=47  Identities=23%  Similarity=0.615  Sum_probs=39.8

Q ss_pred             CCCcceeeccccCc------------------ceecCCCCcccHhHHHHhhccCCCCcccccccc
Q 026563          137 REEECGICLEICCK------------------IVLPDCNHSMCMRCYRNWRARSQSCPFCRDSLR  183 (237)
Q Consensus       137 ~~~~C~IC~~~~~~------------------~v~~~CgH~FC~~Ci~~w~~~~~~CP~CR~~~~  183 (237)
                      .+..|+||++.+.+                  ++.++|||.||..||.+|+..+.+||+||.++.
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            34569999887653                  355789999999999999999999999999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=4.6e-12  Score=94.60  Aligned_cols=49  Identities=29%  Similarity=0.596  Sum_probs=39.6

Q ss_pred             CCCCcceeeccccCc------------------ceecCCCCcccHhHHHHhhcc-----CCCCccccccccc
Q 026563          136 EREEECGICLEICCK------------------IVLPDCNHSMCMRCYRNWRAR-----SQSCPFCRDSLRR  184 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~------------------~v~~~CgH~FC~~Ci~~w~~~-----~~~CP~CR~~~~~  184 (237)
                      ..+..|+||++.+..                  ..+++|||.||..||..|+..     +.+||+||..+..
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            346789999998753                  256899999999999999973     3589999998753

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.5e-11  Score=87.71  Aligned_cols=50  Identities=18%  Similarity=0.123  Sum_probs=44.9

Q ss_pred             CCCCCcceeeccccCcceecCCCC-cccHhHHHHhhccCCCCccccccccc
Q 026563          135 IEREEECGICLEICCKIVLPDCNH-SMCMRCYRNWRARSQSCPFCRDSLRR  184 (237)
Q Consensus       135 ~~~~~~C~IC~~~~~~~v~~~CgH-~FC~~Ci~~w~~~~~~CP~CR~~~~~  184 (237)
                      .-+++.|+||.+.+.+||+++||| .||+.||.+|+..+..||+||.++..
T Consensus        19 ~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             CcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            446799999999999999988775 89999999999999999999998864

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.95  E-value=1.8e-10  Score=76.26  Aligned_cols=48  Identities=23%  Similarity=0.499  Sum_probs=39.8

Q ss_pred             CCCCcceeeccccCcceecCC-----CCcccHhHHHHhhc--cCCCCcccccccc
Q 026563          136 EREEECGICLEICCKIVLPDC-----NHSMCMRCYRNWRA--RSQSCPFCRDSLR  183 (237)
Q Consensus       136 ~~~~~C~IC~~~~~~~v~~~C-----gH~FC~~Ci~~w~~--~~~~CP~CR~~~~  183 (237)
                      ++...|.||++.+.++...+|     +|.||..|+.+|+.  ++.+||+||++++
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            456789999998887655555     59999999999986  5679999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.1e-08  Score=70.04  Aligned_cols=45  Identities=20%  Similarity=0.513  Sum_probs=35.2

Q ss_pred             CCCcceeeccccCc---ceecCCCCcccHhHHHHhhcc--------CCCCcccccc
Q 026563          137 REEECGICLEICCK---IVLPDCNHSMCMRCYRNWRAR--------SQSCPFCRDS  181 (237)
Q Consensus       137 ~~~~C~IC~~~~~~---~v~~~CgH~FC~~Ci~~w~~~--------~~~CP~CR~~  181 (237)
                      ....|+||++.+..   +.+++|||.||..|+..|+..        ..+||.|+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            45789999998753   456789999999999999861        2379987543

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.15  Score=33.18  Aligned_cols=42  Identities=26%  Similarity=0.508  Sum_probs=31.4

Q ss_pred             CCCcceeeccccCcceecCC----CCcccHhHHHHhhc-----cCCCCccc
Q 026563          137 REEECGICLEICCKIVLPDC----NHSMCMRCYRNWRA-----RSQSCPFC  178 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v~~~C----gH~FC~~Ci~~w~~-----~~~~CP~C  178 (237)
                      ..+.|.+|.+.+++.-...|    +|.||.-|-+..++     ....||.-
T Consensus         7 ~~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q~~~~evyCPSG   57 (80)
T d2cs3a1           7 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG   57 (80)
T ss_dssp             CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred             CceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhcCCCCcEECCCC
Confidence            45889999999998644444    69999999998876     34455544

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.05  E-value=1.1  Score=30.05  Aligned_cols=51  Identities=25%  Similarity=0.695  Sum_probs=37.8

Q ss_pred             CCCCcceeeccccC-----ccee--cCCCCcccHhHHHH-hhccCCCCccccccccccC
Q 026563          136 EREEECGICLEICC-----KIVL--PDCNHSMCMRCYRN-WRARSQSCPFCRDSLRRVN  186 (237)
Q Consensus       136 ~~~~~C~IC~~~~~-----~~v~--~~CgH~FC~~Ci~~-w~~~~~~CP~CR~~~~~~~  186 (237)
                      .....|.||-+..-     ++.+  -.|+-..|+.|++- ....++.||-|+...++..
T Consensus        14 ~~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Ykr~k   72 (93)
T d1weoa_          14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR   72 (93)
T ss_dssp             CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCT
T ss_pred             cccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhhhhc
Confidence            34578999998765     2222  35777889999964 5558999999999988543

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=0.28  Score=30.75  Aligned_cols=42  Identities=24%  Similarity=0.408  Sum_probs=31.3

Q ss_pred             CCCcceeeccccCcce---ecCCCCcccHhHHHHhhccCCCCccc
Q 026563          137 REEECGICLEICCKIV---LPDCNHSMCMRCYRNWRARSQSCPFC  178 (237)
Q Consensus       137 ~~~~C~IC~~~~~~~v---~~~CgH~FC~~Ci~~w~~~~~~CP~C  178 (237)
                      ....|.-|...+.+..   -+.|++.||.+|=.=..+.-..||-|
T Consensus        14 ~~~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          14 GERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             SCCEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCCccCCCCcCCCCceEECcCCCCccccccchhhhhhhcCCCCC
Confidence            4567988988877542   36899999999954444566789987