Citrus Sinensis ID: 026568

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ
cHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccccEEEEEEEcccccccccEEEEcccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccEEEEEEccccEEEEEEcccccccEEEEccccccccccHHHHHHHHHcccccccEEEEcccEEEEccEEEccccccc
cHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccEEEcccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHccccccccccccEEEEEEEEccEEEEEEcccccEEEEEccccccEEEEEEccccccccHHHHHHHHHHHccccccEEEEEccEEEEEEEEEEHHHccc
MLSRLMNFLRAcwrpssdryvhtsadtagrqegllwykdngqhingEFSMAVVQANNlledqsqiesgplstlesgpygtfigiydghggpetsrYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVtkqwpmkpqiaavgscCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEmhsmhpddsqiVVLKHNVWRVKGLIQVTSMWKQ
MLSRLMNFLRAcwrpssdryvhtsadtagrqEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ
MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ
****LMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLL***************SGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGI***************QIVVLKHNVWRVKGLIQVTSM***
***RLMNFLRACW************************KDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVT*********AAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWK*
MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ
MLSRLMNFLRACWRPS**************QEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query236 2.2.26 [Sep-21-2011]
Q5Z8P0 392 Probable protein phosphat yes no 0.974 0.586 0.791 1e-110
Q9SD12 379 Probable protein phosphat yes no 0.970 0.604 0.792 1e-104
Q9FKX4 385 Probable protein phosphat no no 0.978 0.6 0.728 4e-98
Q10S32 399 Probable protein phosphat no no 0.978 0.578 0.711 6e-98
Q5PNS9 400 Probable protein phosphat no no 0.978 0.577 0.683 4e-95
Q7XCJ7 393 Probable protein phosphat no no 0.978 0.587 0.690 4e-95
Q9LHJ9 385 Probable protein phosphat no no 0.961 0.589 0.612 1e-84
Q94CL8 384 Probable protein phosphat no no 0.932 0.572 0.621 5e-81
Q501F9 370 Probable protein phosphat no no 0.932 0.594 0.549 3e-67
Q6ZHC8 387 Probable protein phosphat no no 0.936 0.571 0.514 3e-61
>sp|Q5Z8P0|P2C60_ORYSJ Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1 Back     alignment and function desciption
 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 182/230 (79%), Positives = 205/230 (89%)

Query: 1   MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLE 60
           M+  LMN LRACWRPSS+++    +D AGRQ+GLLWYKD GQH+NGEFSMAVVQANNLLE
Sbjct: 1   MIVTLMNLLRACWRPSSNQHARAGSDVAGRQDGLLWYKDTGQHVNGEFSMAVVQANNLLE 60

Query: 61  DQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVI 120
           DQ QIESGPLS L+SGPYGTF+G+YDGHGGPET+ YINDHLF HLKRF SEQ S+S DV+
Sbjct: 61  DQCQIESGPLSFLDSGPYGTFVGVYDGHGGPETACYINDHLFHHLKRFASEQNSISADVL 120

Query: 121 KKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKA 180
           KKAY+ATEDGFFS+VTKQWP+KPQIAAVGSCCLVGVI  G LY+AN+GDSR VLGR VKA
Sbjct: 121 KKAYEATEDGFFSVVTKQWPVKPQIAAVGSCCLVGVICGGILYVANVGDSRVVLGRHVKA 180

Query: 181 TGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQV 230
           TGEVLA+QLS+EHNV IESVR+E+ SMHP+D  IVVLKHNVWRVKGLIQV
Sbjct: 181 TGEVLAVQLSAEHNVSIESVRKELQSMHPEDRHIVVLKHNVWRVKGLIQV 230

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q9SD12|P2C46_ARATH Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKX4|P2C79_ARATH Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1 Back     alignment and function description
>sp|Q10S32|P2C28_ORYSJ Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1 Back     alignment and function description
>sp|Q5PNS9|P2C64_ARATH Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1 Back     alignment and function description
>sp|Q7XCJ7|P2C72_ORYSJ Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHJ9|P2C38_ARATH Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1 Back     alignment and function description
>sp|Q94CL8|P2C48_ARATH Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1 Back     alignment and function description
>sp|Q501F9|P2C67_ARATH Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1 Back     alignment and function description
>sp|Q6ZHC8|P2C25_ORYSJ Probable protein phosphatase 2C 25 OS=Oryza sativa subsp. japonica GN=Os02g0685600 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
224133996 397 predicted protein [Populus trichocarpa] 0.978 0.581 0.900 1e-123
255579574 395 protein phosphatase 2c, putative [Ricinu 0.978 0.584 0.891 1e-121
255560515 397 protein phosphatase 2c, putative [Ricinu 0.978 0.581 0.857 1e-117
224078369 397 predicted protein [Populus trichocarpa] 0.978 0.581 0.848 1e-115
224105139 397 predicted protein [Populus trichocarpa] 0.978 0.581 0.826 1e-113
359496811 397 PREDICTED: LOW QUALITY PROTEIN: probable 0.978 0.581 0.822 1e-113
4206122 396 protein phosphatase 2C homolog [Mesembry 0.974 0.580 0.835 1e-113
225428074 397 PREDICTED: probable protein phosphatase 0.978 0.581 0.813 1e-111
449458634 397 PREDICTED: probable protein phosphatase 0.978 0.581 0.800 1e-110
449524832 397 PREDICTED: LOW QUALITY PROTEIN: probable 0.978 0.581 0.800 1e-110
>gi|224133996|ref|XP_002327730.1| predicted protein [Populus trichocarpa] gi|118486583|gb|ABK95130.1| unknown [Populus trichocarpa] gi|222836815|gb|EEE75208.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 208/231 (90%), Positives = 221/231 (95%)

Query: 1   MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLE 60
           MLSRL+NFLRACW PSSDRYVHT ++ AGRQ+GLLWYKD GQH+NGEFSMAVVQANNLLE
Sbjct: 1   MLSRLINFLRACWLPSSDRYVHTGSEAAGRQDGLLWYKDTGQHMNGEFSMAVVQANNLLE 60

Query: 61  DQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVI 120
           DQSQIESGPLSTL+SGPYGTF+GIYDGHGGPETSRY+NDHLFQHLKRFTSEQQSMSVDVI
Sbjct: 61  DQSQIESGPLSTLDSGPYGTFVGIYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVI 120

Query: 121 KKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKA 180
           +KAYQATE+GF SLVTKQWPMKPQIAAVGSCCLV VI  G LYIANLGDSRAVLGRLVKA
Sbjct: 121 RKAYQATEEGFLSLVTKQWPMKPQIAAVGSCCLVAVICGGILYIANLGDSRAVLGRLVKA 180

Query: 181 TGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVT 231
           TGEVLAIQLSSEHNV IESVRQEMHS+HPDDSQIVVLKHNVWRVKGLIQ++
Sbjct: 181 TGEVLAIQLSSEHNVAIESVRQEMHSLHPDDSQIVVLKHNVWRVKGLIQIS 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579574|ref|XP_002530628.1| protein phosphatase 2c, putative [Ricinus communis] gi|223529801|gb|EEF31736.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255560515|ref|XP_002521272.1| protein phosphatase 2c, putative [Ricinus communis] gi|223539540|gb|EEF41128.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224078369|ref|XP_002305529.1| predicted protein [Populus trichocarpa] gi|222848493|gb|EEE86040.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224105139|ref|XP_002313699.1| predicted protein [Populus trichocarpa] gi|118485969|gb|ABK94829.1| unknown [Populus trichocarpa] gi|222850107|gb|EEE87654.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359496811|ref|XP_003635344.1| PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 60-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|4206122|gb|AAD11430.1| protein phosphatase 2C homolog [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|225428074|ref|XP_002279993.1| PREDICTED: probable protein phosphatase 2C 60 isoform 1 [Vitis vinifera] gi|359475009|ref|XP_003631567.1| PREDICTED: probable protein phosphatase 2C 60 isoform 2 [Vitis vinifera] gi|297744584|emb|CBI37846.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458634|ref|XP_004147052.1| PREDICTED: probable protein phosphatase 2C 60-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449524832|ref|XP_004169425.1| PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 60-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
TAIR|locus:2081770 379 AT3G51370 [Arabidopsis thalian 0.970 0.604 0.792 4.1e-97
TAIR|locus:2156877 385 AT5G66080 [Arabidopsis thalian 0.978 0.6 0.728 5.5e-93
TAIR|locus:2121234 400 AT4G38520 [Arabidopsis thalian 0.978 0.577 0.683 2.6e-86
TAIR|locus:2091265 385 AT3G12620 [Arabidopsis thalian 0.961 0.589 0.612 5.5e-77
TAIR|locus:2097238 384 AT3G55050 [Arabidopsis thalian 0.932 0.572 0.621 3.1e-74
TAIR|locus:2151256 370 AT5G02760 [Arabidopsis thalian 0.927 0.591 0.551 1.8e-62
TAIR|locus:2086097 384 AT3G17090 [Arabidopsis thalian 0.843 0.518 0.523 3.3e-56
TAIR|locus:2170234 393 AT5G06750 [Arabidopsis thalian 0.885 0.531 0.520 6.8e-56
TAIR|locus:2118899 380 AT4G33920 [Arabidopsis thalian 0.889 0.552 0.508 3e-53
TAIR|locus:2041444 856 POL "poltergeist" [Arabidopsis 0.233 0.064 0.363 4.9e-12
TAIR|locus:2081770 AT3G51370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 183/231 (79%), Positives = 205/231 (88%)

Query:     1 MLSRLMNFLRACWRPSSDRYVHTSADTAGRQEGLLWYKDNGQHINGEFSMAVVQANNLLE 60
             MLS LM  L AC  PSS      S+D+ G+Q+GLLWYKD GQH+ GEFSMAVVQANNLLE
Sbjct:     1 MLSTLMKLLSACLWPSSSS--GKSSDSTGKQDGLLWYKDFGQHLVGEFSMAVVQANNLLE 58

Query:    61 DQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVI 120
             DQSQ+ESGPLSTL+SGPYGTFIGIYDGHGGPETSR++NDHLFQHLKRF +EQ SMSVDVI
Sbjct:    59 DQSQVESGPLSTLDSGPYGTFIGIYDGHGGPETSRFVNDHLFQHLKRFAAEQASMSVDVI 118

Query:   121 KKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKA 180
             KKAY+ATE+GF  +VTKQWP KPQIAAVGSCCLVGVI  G LYIAN+GDSRAVLGR +KA
Sbjct:   119 KKAYEATEEGFLGVVTKQWPTKPQIAAVGSCCLVGVICGGMLYIANVGDSRAVLGRAMKA 178

Query:   181 TGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVT 231
             TGEV+A+QLS+EHNV IESVRQEMHS+HPDDS IV+LKHNVWRVKGLIQ++
Sbjct:   179 TGEVIALQLSAEHNVSIESVRQEMHSLHPDDSHIVMLKHNVWRVKGLIQIS 229
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISS
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0008287 "protein serine/threonine phosphatase complex" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2156877 AT5G66080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121234 AT4G38520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091265 AT3G12620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097238 AT3G55050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151256 AT5G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086097 AT3G17090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170234 AT5G06750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118899 AT4G33920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041444 POL "poltergeist" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SD12P2C46_ARATH3, ., 1, ., 3, ., 1, 60.79220.97030.6042yesno
Q5Z8P0P2C60_ORYSJ3, ., 1, ., 3, ., 1, 60.79130.97450.5867yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_570012
SubName- Full=Putative uncharacterized protein; (397 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 7e-29
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 3e-26
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 2e-14
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 2e-08
PLN03145 365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 5e-08
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 9e-05
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information 
 Score =  109 bits (273), Expect = 7e-29
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 26/165 (15%)

Query: 70  LSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKR---FTSEQQSMSVDVIKKAYQA 126
           + T +    G F G++DGHGG E +++++ +L + L        ++     + ++KA+ +
Sbjct: 28  VITPDLSDSGGFFGVFDGHGGSEAAKFLSKNLPEILAEELIKEKDELEDVEEALRKAFLS 87

Query: 127 TEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLA 186
           T++           ++   A  GS  +V +IS   LY+AN+GDSRAVL R  K      A
Sbjct: 88  TDEEI---------LEELEALSGSTAVVALISGNKLYVANVGDSRAVLCRNGK------A 132

Query: 187 IQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVT 231
           +QL+ +H    E  R  + +                RV G++ ++
Sbjct: 133 VQLTEDHKPSNEDERARIEAAGGFVIN--------GRVNGVLALS 169

The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity. Length = 252
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 236
KOG0700 390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
KOG0698 330 consensus Serine/threonine protein phosphatase [Si 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
PLN03145 365 Protein phosphatase 2c; Provisional 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 99.97
KOG0699 542 consensus Serine/threonine protein phosphatase [Si 99.95
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 99.94
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.91
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.91
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.89
KOG1323 493 consensus Serine/threonine phosphatase [Signal tra 99.82
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.45
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.08
KOG1379330 consensus Serine/threonine protein phosphatase [Si 98.97
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 98.89
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 97.62
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 97.53
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-50  Score=355.75  Aligned_cols=234  Identities=46%  Similarity=0.772  Sum_probs=201.7

Q ss_pred             ChHHHHHHHHHhcCccccCcccc--CCCCC-CCccccccccCCCCCccCceeeeeecCCCCCccceecccCCCCCCCC-C
Q 026568            1 MLSRLMNFLRACWRPSSDRYVHT--SADTA-GRQEGLLWYKDNGQHINGEFSMAVVQANNLLEDQSQIESGPLSTLES-G   76 (236)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~w~~~~~~~~~~~~s~~~~~~r~~~ED~~~i~~~~~~~~~~-~   76 (236)
                      |++..+++.+.||+|..+....+  .+... ...+++.|+++...+..+++++++.+.++.++|...++.+....... .
T Consensus        17 ~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~~~n~~q~a~~~~~edrv~~~~s~~   96 (390)
T KOG0700|consen   17 MKSTPMRLKRSCLRPIRRGESSSRSGSDSSGNSVDGLLWYKDRSEHSFGDFSMAVLQANNLQEAQGKAEEDRVSVAVSEE   96 (390)
T ss_pred             hccccchhhhhccCCCccccccccccccCCCCCcccccccccccccCcccchhhhhhhhhhhhhcCCcccCcceeeeecc
Confidence            56778899999999998732211  12222 36789999999999999999999999998888888877766654433 5


Q ss_pred             CCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhh------------h--------------------h-ccchHHHHHHH
Q 026568           77 PYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTS------------E--------------------Q-QSMSVDVIKKA  123 (236)
Q Consensus        77 ~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~------------~--------------------~-~~~~~~~l~~a  123 (236)
                      +...|+||||||||++|++|++++|+.++...+.            +                    . ...+.++|.+|
T Consensus        97 ~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~A  176 (390)
T KOG0700|consen   97 NGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKA  176 (390)
T ss_pred             CCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHH
Confidence            6779999999999999999999999999983332            1                    1 24578899999


Q ss_pred             HHHHHHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHH
Q 026568          124 YQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQE  203 (236)
Q Consensus       124 f~~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~R  203 (236)
                      |.++|++|++.+.+++...|+.+.+||||++++|.+..|||||+|||||||+...+..+...++|||.||+.++++|++|
T Consensus       177 f~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~R  256 (390)
T KOG0700|consen  177 FEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRR  256 (390)
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999844444479999999999999999999


Q ss_pred             HHhcCCCCCCeEEEeCCeecccCcccccccCCC
Q 026568          204 MHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ  236 (236)
Q Consensus       204 I~~~gp~~~~~vv~~~~~~rv~G~L~vsRaiG~  236 (236)
                      |+.+||+|+.++++++  |||+|+|+|||||||
T Consensus       257 ir~eHPdd~~~vv~~~--~RvkG~L~vsRAfGd  287 (390)
T KOG0700|consen  257 IRSEHPDDPHIVVNKH--WRVKGILQVSRAFGD  287 (390)
T ss_pred             HHHhCCCCcceEeecc--ceeeEEEEeeeeccc
Confidence            9999999999999887  899999999999998

>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
3jrq_A 326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 5e-08
3nmn_B 319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 5e-08
3kdj_B 316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 7e-08
3nmv_B 324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 2e-05
4ds8_B343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 4e-05
3rt0_A340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 4e-05
3ujg_B350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 4e-05
3kb3_B321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 4e-05
3nmt_B341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 4e-05
3qn1_B337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 4e-05
1a6q_A 382 Crystal Structure Of The Protein SerineTHREONINE PH 5e-05
3fxj_A 390 Crystal Structure Of Human Protein Phosphatase 1a ( 5e-05
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 1e-04
2pnq_A 467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 2e-04
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 2e-04
3mq3_A 467 Crystal Structure Of Native Bovine Pdp1c Length = 4 4e-04
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 81  FIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDV---IKKAYQATEDGFFSLVTK 137
           F G+YDGHGG + + Y  + +   L    ++++ M  D    ++K  +A  + F  + ++
Sbjct: 69  FFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSE 128
Query: 138 QWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGR 176
              + P+   VGS  +V V+    +++AN GDSRAVL R
Sbjct: 129 IESVAPE--TVGSTSVVAVVFPSHIFVANCGDSRAVLCR 165
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 3e-38
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 4e-37
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 6e-07
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 2e-23
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 4e-22
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 9e-22
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 1e-21
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 6e-21
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 2e-20
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 2e-20
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 2e-20
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 6e-20
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 2e-11
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 3e-10
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
 Score =  136 bits (343), Expect = 3e-38
 Identities = 35/235 (14%), Positives = 68/235 (28%), Gaps = 55/235 (23%)

Query: 35  LWYKDNGQHINGEFSMAVVQ---------ANNLLEDQSQIESGPLSTLESGPYGTFIGIY 85
            W  D           A  +          ++  ED         +           G++
Sbjct: 16  SWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWLKFRSENNC-------FLYGVF 68

Query: 86  DGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDV---IKKAYQATEDGFFSLVTKQWPMK 142
           +G+ G   + ++   L   L       +    DV   + +A+   E  F   +      K
Sbjct: 69  NGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEK 128

Query: 143 PQIAAV------------------------------GSCCLVGVISCGTLYIANLGDSRA 172
             + +                               G+  +V V+    LY+AN+G +RA
Sbjct: 129 ASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRA 188

Query: 173 VLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVWRVKGL 227
           +L +       +   QL+ +H    E     +  +  D  +I      V  + G 
Sbjct: 189 LLCK--STVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQ----VGIICGQ 237
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 99.98
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 99.98
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 99.98
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 99.97
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 99.97
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 99.97
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 99.97
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 99.97
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 99.97
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.92
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.92
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.92
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.87
3rnr_A211 Stage II sporulation E family protein; structural 99.86
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 98.86
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 98.79
3f79_A255 Probable two-component response regulator; adaptor 98.34
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 97.78
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 95.89
3eq2_A394 Probable two-component response regulator; adaptor 81.51
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
Probab=100.00  E-value=1.1e-34  Score=269.00  Aligned_cols=181  Identities=25%  Similarity=0.349  Sum_probs=140.8

Q ss_pred             ceeeeeecCCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhh------hhh--------
Q 026568           47 EFSMAVVQANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFT------SEQ--------  112 (236)
Q Consensus        47 ~~s~~~~~~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~------~~~--------  112 (236)
                      .|.....+.|.+|||++.+....      .+...||||||||||+.||+|++++|+.+|.+.+      .+.        
T Consensus        40 ~~~s~~g~~R~~nED~~~v~~~~------~~~~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~  113 (467)
T 2pnq_A           40 GFDSNRLPANAPIEDRRSATTCL------QTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGR  113 (467)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEES------SSSCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC---
T ss_pred             EEEeeccCCCCCCCCceeeeecc------CCCcEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccc
Confidence            35556777899999999763211      1245899999999999999999999999986431      100        


Q ss_pred             -------------------------------------------c-cchHHHHHHHHHHHHHHHHHHHhhhCC------CC
Q 026568          113 -------------------------------------------Q-SMSVDVIKKAYQATEDGFFSLVTKQWP------MK  142 (236)
Q Consensus       113 -------------------------------------------~-~~~~~~l~~af~~~d~~~~~~~~~~~~------~~  142 (236)
                                                                 . ..+.++|++||.++|++|.+.......      ..
T Consensus       114 ~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~  193 (467)
T 2pnq_A          114 ALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLV  193 (467)
T ss_dssp             -CCCCEEECCCTTCCCCSTTHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhhhcchhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence                                                       1 146789999999999999876532100      01


Q ss_pred             CCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHhHHHHHHhcCCCCCCeEEEeCCee
Q 026568          143 PQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIESVRQEMHSMHPDDSQIVVLKHNVW  222 (236)
Q Consensus       143 ~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~E~~RI~~~gp~~~~~vv~~~~~~  222 (236)
                      +....+||||++++|.+++|||||+|||||||++. ..+|.+++++||.||+|.++.|++||.++||..+...+..++  
T Consensus       194 ~~~~~~GtTa~v~li~~~~l~vAnvGDSRa~l~r~-~~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~~--  270 (467)
T 2pnq_A          194 LRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQ-EEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQD--  270 (467)
T ss_dssp             HHHHHSEECEEEEEEETTEEEEEEESSCEEEEEEE-CTTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSSS--
T ss_pred             ccCCCCcceEEEEEEECCEEEEEECCCceEEEEEe-cCCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEecC--
Confidence            12356999999999999999999999999999996 234455999999999999999999999999865433333333  


Q ss_pred             cccCcccccccCCC
Q 026568          223 RVKGLIQVTSMWKQ  236 (236)
Q Consensus       223 rv~G~L~vsRaiG~  236 (236)
                      ||+|.|++||||||
T Consensus       271 Rv~G~l~vtRAlGd  284 (467)
T 2pnq_A          271 RLLGLLMPFRAFGD  284 (467)
T ss_dssp             SBTTTBSSSBCEEC
T ss_pred             ccccccccchhcCc
Confidence            99999999999997
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 236
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 2e-11
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 6e-06
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 81  FIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQSMSVDVIKKAYQATEDGFFSLVTKQWP 140
           F  +YDGH G + ++Y  +HL  H+      + S     ++        GF  +      
Sbjct: 54  FFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRV 113

Query: 141 M---KPQIAAVGSCCLVGVISCGTLYIANLGDSRAVL 174
           M   K      GS  +  +IS    Y  N GDSR +L
Sbjct: 114 MSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLL 150
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.92
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=261.84  Aligned_cols=168  Identities=20%  Similarity=0.298  Sum_probs=137.5

Q ss_pred             eeeeeec-CCCCCccceecccCCCCCCCCCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhhhhhhc-------cchHHH
Q 026568           48 FSMAVVQ-ANNLLEDQSQIESGPLSTLESGPYGTFIGIYDGHGGPETSRYINDHLFQHLKRFTSEQQ-------SMSVDV  119 (236)
Q Consensus        48 ~s~~~~~-~r~~~ED~~~i~~~~~~~~~~~~~~~lfgV~DGHGG~~aa~~~~~~l~~~l~~~~~~~~-------~~~~~~  119 (236)
                      |+.+..| .|+.|||++.+..+.   ....++..||||||||||..+|+|++++|++.|.+.+....       ..+.++
T Consensus        23 ~g~~s~~G~R~~~ED~~~~~~~~---~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a   99 (295)
T d1a6qa2          23 YGLSSMQGWRVEMEDAHTAVIGL---PSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNG   99 (295)
T ss_dssp             EEEEEEEETSSSCCEEEEEEEEE---TTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHH
T ss_pred             EEEEeCccCCCcccCeeEEEccc---CCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHH
Confidence            3445444 488999998774322   12223468999999999999999999999999987654332       235778


Q ss_pred             HHHHHHHHHHHHHHHHhhhCCCCCCcccccceEEEEEEECCEEEEEEcCCCcEEEEeeeccCCceEEEeCCCCCCCCCHh
Q 026568          120 IKKAYQATEDGFFSLVTKQWPMKPQIAAVGSCCLVGVISCGTLYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVGIES  199 (236)
Q Consensus       120 l~~af~~~d~~~~~~~~~~~~~~~~~~~~GtTa~v~~i~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~DH~~~~~~  199 (236)
                      |+++|.++++.+.......    +....+|||+++++|.++++||||+||||+|+++.      +++++||.||+|.++.
T Consensus       100 l~~a~~~~~~~~~~~~~~~----~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~------~~~~~lT~dH~~~~~~  169 (295)
T d1a6qa2         100 IRTGFLEIDEHMRVMSEKK----HGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRN------RKVHFFTQDHKPSNPL  169 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHT----TCCCCCEECEEEEEECSSEEEEEEESSCEEEEEET------TEEEEECCCCCTTSHH
T ss_pred             HHHHHHHHHHHHhhhhhhc----cCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeec------ccceeeccccCcccHH
Confidence            9999999999987765442    33467899999999999999999999999999998      8999999999999999


Q ss_pred             HHHHHHhcCCCCCCeEEEeCCeecccCcccccccCCC
Q 026568          200 VRQEMHSMHPDDSQIVVLKHNVWRVKGLIQVTSMWKQ  236 (236)
Q Consensus       200 E~~RI~~~gp~~~~~vv~~~~~~rv~G~L~vsRaiG~  236 (236)
                      |++||++.|+    .+..    +|+.|.|++||+|||
T Consensus       170 E~~Ri~~~gg----~v~~----~r~~g~l~~tRa~Gd  198 (295)
T d1a6qa2         170 EKERIQNAGG----SVMI----QRVNGSLAVSRALGD  198 (295)
T ss_dssp             HHHHHHHTTC----CEET----TEETTTBSCSBCEEC
T ss_pred             HHhhHhhcCC----cccc----cccCCceeeeeccCc
Confidence            9999999994    4432    399999999999997
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure