Citrus Sinensis ID: 026572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHccccccccHHHHHccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEEEccccccccccEEEEEEEEEEEEEEEEEcccccEEEcccccEEEEEEEEEEEEEcccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHccccccccccccHHHccHHHHHcccEEEEEEccccEEcccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEEEccccccccEEEEEEEEEEEEEEEEEEcccccEEEcccccHHHHHHEEEEEcccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
mtlrsslapkslLYLNEKRfataqpkapaqARQMGAlkvsisspgfiyepyapreaipfwrrwftrdgwrrtKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFeaydskgvtvagdktkEVLVRDIWVFekslfhpgaywrlcgriki
Flexible Loop (DISEMBL)
mtlrsslapksLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEpyapreaipfwrrwftrdgwrRTKDDIILELKSAYAIAKlrksgyskqkfYTEAVDLYKEINTlmangdktslRKAVTEKMYSALKNeikqresmwssVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQkfeaydskgvtvagdktkeVLVRDIWVfekslfhpgaywrlcgriki
Low Complexity Region (SEG)
MTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered region (IsUnstruct)
************************************LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI**
Disordered Region (DISOPRED)
*****************************************SSPGFIYEPYAPR*************GWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered Region (DISEMBL)
MTLRSSLAPKSLLYLNEKRFAT**************LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Disordered Region (DISPRO)
*****SLAPKSLLYLNE**FATAQPKAPA*ARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q9VCX3	361	Probable 39S ribosomal pr	yes	no	0.775	0.506	0.271	1e-11
Q4QQQ4	309	39S ribosomal protein L45	yes	no	0.783	0.598	0.235	2e-08
P59480	309	39S ribosomal protein L45	N/A	no	0.783	0.598	0.235	3e-08
Q9D0Q7	306	39S ribosomal protein L45	yes	no	0.788	0.607	0.23	5e-08
Q3T142	306	39S ribosomal protein L45	yes	no	0.694	0.535	0.219	2e-06
Q9BRJ2	306	39S ribosomal protein L45	yes	no	0.567	0.437	0.255	8e-06
Q95Y71	357	Probable 39S ribosomal pr	yes	no	0.588	0.389	0.263	9e-06
Q616T6	361	Probable 39S ribosomal pr	N/A	no	0.588	0.385	0.25	2e-05

>sp|Q9VCX3|RM45_DROME Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila melanogaster GN=mRpL45 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 16/199 (8%)

Query: 41  ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQK 98
           IS  G I+E Y P E     +   +  G ++  + +  + KS  A+ K+R     +S   
Sbjct: 109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167

Query: 99  FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 158
           F  EA D+Y + +T MA  DK  +R+ V+E+ Y  + + +K +     ++ W+ ++ +  
Sbjct: 168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222

Query: 159 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIW--- 215
            R + AR+  V   +    F Q+T+ F ++Q    YD  G  + G    E++ +D+    
Sbjct: 223 PRVVHARVTEVITKE--NQFAQVTVRFHSQQMLAIYDRFGRLMHGS---EIITKDVLEYV 277

Query: 216 VFEKSLFHPGAYWRLCGRI 234
           VFEK + +    WRL  +I
Sbjct: 278 VFEKHISNEYGKWRLHDKI 296

Drosophila melanogaster (taxid: 7227)

>sp|Q4QQQ4|RM45_XENTR 39S ribosomal protein L45, mitochondrial OS=Xenopus tropicalis GN=mrpl45 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 39  VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 96
           ++I+    I++PY P E         +++G ++    +     S  AI K+++  S ++ 
Sbjct: 76  INIACTAGIFDPYIPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134

Query: 97  QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 156
           + F  +A +L+   +  +   D+  L   VTE+ Y  +      R + + ++ W  +E I
Sbjct: 135 KTFPEKAQELFIAAHQCLTKFDRHELHTLVTERCYPEMV-----RGNRYRTIQWSFVESI 189

Query: 157 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 214
              R ++ R    V + +L   + Q+T+    KQ    YD  G  + G ++ ++VL  + 
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQSLTIYDRFGRVMCGSEEPRDVL--EY 244

Query: 215 WVFEKSLFHPGAYWRLCGRI 234
            VFE+ + +P   WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264

Xenopus tropicalis (taxid: 8364)

>sp|P59480|RM45_XENLA 39S ribosomal protein L45, mitochondrial OS=Xenopus laevis GN=mrpl45 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 95/200 (47%), Gaps = 15/200 (7%)

Query: 39  VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 96
           ++I+    I +PY P E         +++G ++    +     S  AI K+++  S ++ 
Sbjct: 76  INIACTAGILDPYVPPEGDARLSS-LSKEGLKQRTQQLKQTAASQLAIRKVKEYDSEFTT 134

Query: 97  QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 156
           + F  +A +++   +  + N D+  L   VTE+ Y  +      R + + ++ W  +E I
Sbjct: 135 KTFPEKAQEIFITAHKYLTNFDRHKLHTLVTERCYPEMV-----RGNRYRTIRWSFVESI 189

Query: 157 IKMRTLRARLIG-VDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG-DKTKEVLVRDI 214
              R ++ R    V + +L   + Q+T+    KQ    YD  G  + G ++ ++VL  + 
Sbjct: 190 EAPRVVQVRCPEMVSKGNL---YAQVTVRMHNKQTLIVYDRFGRVMCGSEEPRDVL--EY 244

Query: 215 WVFEKSLFHPGAYWRLCGRI 234
            VFE+ + +P   WR+ G+I
Sbjct: 245 VVFERHMVNPYGTWRMHGKI 264

Xenopus laevis (taxid: 8355)

>sp|Q9D0Q7|RM45_MOUSE 39S ribosomal protein L45, mitochondrial OS=Mus musculus GN=Mrpl45 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 14/200 (7%)

Query: 39  VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSK 96
           + ++    I++PY P E         +++G  +  + +     S  AI K+R+  + +  
Sbjct: 76  IHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQRTERLRKNAASQLAIRKIREFDANFKT 134

Query: 97  QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 156
           + F  +A D++ E +  + N D   L   VTE  +  +  ++K     + +V W  +E +
Sbjct: 135 KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLK-----YKTVRWGFVESL 189

Query: 157 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDI 214
              + +  R  G+   + + ++ Q+T+    +Q    YD  G  + G  D  K+VL  + 
Sbjct: 190 EPAQVVHVRCSGL--VNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPKDVL--EY 245

Query: 215 WVFEKSLFHPGAYWRLCGRI 234
            VFE+ L +P   WR+  +I
Sbjct: 246 VVFERHLMNPYGSWRMHAKI 265

Mus musculus (taxid: 10090)

>sp|Q3T142|RM45_BOVIN 39S ribosomal protein L45, mitochondrial OS=Bos taurus GN=MRPL45 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 64  FTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTS 121
            +++G  +  + +   + S  +I ++++S   +  + F  +A D++ E +  + N D   
Sbjct: 100 LSKEGLAQRTERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDR 159

Query: 122 LRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQL 181
           L   VTE  +  +  +IK     + +V+W  +E +   + ++ R   +     +  + Q+
Sbjct: 160 LHTLVTENCFPDMVWDIK-----YKTVSWSFVESLEPPQVVQVRCSSLVTK--SNTYGQV 212

Query: 182 TLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
           T+    +Q    YD  G  + G +     V +  VFEK L +P   WR+ G+I
Sbjct: 213 TVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLANPYGSWRMHGKI 265

Bos taurus (taxid: 9913)

>sp|Q9BRJ2|RM45_HUMAN 39S ribosomal protein L45, mitochondrial OS=Homo sapiens GN=MRPL45 PE=1 SV=2

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 92  SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWE 151
           + +  + F  +A D++ E +  + N D   L   VTE  +  +  +IK     + +V W 
Sbjct: 130 ANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIK-----YKTVRWS 184

Query: 152 LIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEV 209
            +E +     ++ R   +   +   V+ Q+T+    +Q    YD  G  + G  D  K+V
Sbjct: 185 FVESLEPSHVVQVRCSSM--MNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPKDV 242

Query: 210 LVRDIWVFEKSLFHPGAYWRLCGRI 234
           L  +  VFEK L +P   WR+  +I
Sbjct: 243 L--EYVVFEKQLTNPYGSWRMHTKI 265

Homo sapiens (taxid: 9606)

>sp|Q95Y71|RM45_CAEEL Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis elegans GN=Y119D3B.16 PE=3 SV=3

 Score = 50.4 bits (119), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 90  RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 146
           +K G+ K   + F  +A D+Y + +  +   DKT++ K +TE  ++ +  +++       
Sbjct: 164 KKQGFEKFDIKTFCAKAEDIYVQAHRALEQRDKTAMYKYITEYAFAKMWPDVEN-----G 218

Query: 147 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 206
           SV +ELI  +   R +  R         N +  Q+T+    +QK   YD  G  + G + 
Sbjct: 219 SVRFELISVLEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLAVYDRFGGLLLGSED 277

Query: 207 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
           +E  V +  VFE  +      WRL G+I
Sbjct: 278 EEKDVVEYVVFENHIAVVDGEWRLHGKI 305

Caenorhabditis elegans (taxid: 6239)

>sp|Q616T6|RM45_CAEBR Probable 39S ribosomal protein L45, mitochondrial OS=Caenorhabditis briggsae GN=CBG15146 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 90  RKSGYSK---QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWS 146
           +K G+ K   + F  +A D+Y+  +  M   DK  + + +TE  ++ +  +++       
Sbjct: 167 KKQGFEKFDVKTFCAKAEDIYERAHKAMEARDKKEMYRCITEYAFAKMWPDVEN-----G 221

Query: 147 SVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 206
           SV +EL+  +   R +  R         N +  Q+T+    +QK   YD  G  + G + 
Sbjct: 222 SVRFELVSIVEPSRVVAVRCFDNPPKSGNDI-AQITVRMHTRQKLALYDRFGGLILGSED 280

Query: 207 KEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
           +E  V +  VFE  +      WRL G+I
Sbjct: 281 EEKDVVEYVVFENHIAVVDGEWRLHGKI 308

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
356576761	309	PREDICTED: probable 39S ribosomal protei	0.987	0.754	0.730	1e-100
224123246	233	predicted protein [Populus trichocarpa]	0.944	0.957	0.771	3e-99
388499100	305	unknown [Lotus japonicus]	0.987	0.763	0.735	3e-99
449485732	302	PREDICTED: probable 39S ribosomal protei	0.991	0.774	0.741	5e-98
449435699	302	PREDICTED: uncharacterized protein LOC10	0.915	0.715	0.791	6e-98
297808779	314	protein translocase [Arabidopsis lyrata	0.991	0.745	0.709	3e-96
186526131	296	Mitochondrial inner membrane translocase	0.991	0.790	0.700	3e-95
145334561	313	Mitochondrial inner membrane translocase	0.991	0.747	0.700	4e-95
359487996	379	PREDICTED: 39S ribosomal protein L45, mi	0.855	0.532	0.787	2e-92
298205045	196	unnamed protein product [Vitis vinifera]	0.830	1.0	0.780	2e-90

>gi|356576761|ref|XP_003556498.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like [Glycine max]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/234 (73%), Positives = 203/234 (86%), Gaps = 1/234 (0%)

Query: 1   MTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFW 60
           +TLRS++A +  +++N +R  + Q KA AQARQ+G  ++S+SSPGFIYEPY PR+ IPFW
Sbjct: 68  LTLRSTMAAELSIFMNNRRMLSTQVKASAQARQVGQ-QISLSSPGFIYEPYEPRDKIPFW 126

Query: 61  RRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKT 120
           +RWFTR G RRTK+DIILELKSAYAIAKLRK+GYSK +FY EA ++YKEINTL+A GDK 
Sbjct: 127 KRWFTRSGLRRTKNDIILELKSAYAIAKLRKTGYSKNQFYNEAANMYKEINTLIAKGDKR 186

Query: 121 SLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ 180
           +LRKAVTE M+SALKNEIKQRE+ WS V WE++EP++K+RTLRARLIGVDR DLNK F+Q
Sbjct: 187 TLRKAVTENMFSALKNEIKQRETAWSRVYWEMVEPVVKIRTLRARLIGVDRKDLNKTFIQ 246

Query: 181 LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
           LTLE LAKQKFEAYDSKG  VAGDK+KEVLVRDIWVFEKS+FH GA WRLCGRI
Sbjct: 247 LTLEILAKQKFEAYDSKGSVVAGDKSKEVLVRDIWVFEKSMFHAGATWRLCGRI 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123246|ref|XP_002319031.1| predicted protein [Populus trichocarpa] gi|222857407|gb|EEE94954.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 199/228 (87%), Gaps = 5/228 (2%)

Query: 13  LYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 72
           ++LN+KR AT +  AP QARQMG+LKVSISSPGFIYEPYAPR+ I FWRRWFT+ GWRRT
Sbjct: 5   IFLNDKRSATTKVNAPPQARQMGSLKVSISSPGFIYEPYAPRDTISFWRRWFTKSGWRRT 64

Query: 73  KDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYS 132
           K+DIILELK+AYAI KLRK+GYSK KFY EA+ LYKEINTL+ANGDKT+LRKAVTEKMYS
Sbjct: 65  KNDIILELKNAYAIVKLRKTGYSKHKFYVEAIKLYKEINTLLANGDKTALRKAVTEKMYS 124

Query: 133 ALKNEIKQRESMW--SSVNWELIEPIIKMRTLRARL---IGVDRNDLNKVFVQLTLEFLA 187
            LKNEIKQR+S W  S + WE+IEP + +RTLRARL   IGVD++DLNKVF+QLTLE   
Sbjct: 125 ELKNEIKQRQSAWNMSKLYWEMIEPAVLIRTLRARLATEIGVDKSDLNKVFIQLTLEIKT 184

Query: 188 KQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK 235
           KQKFEAYDSKG  VAGDK KE+LVR+IWVFEKSLFHPGAYWRLCGRIK
Sbjct: 185 KQKFEAYDSKGARVAGDKNKEILVREIWVFEKSLFHPGAYWRLCGRIK 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499100|gb|AFK37616.1| unknown [Lotus japonicus]

 Score =  366 bits (940), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 172/234 (73%), Positives = 200/234 (85%), Gaps = 1/234 (0%)

Query: 1   MTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFW 60
           +TLRS++A +  +++N+KR  + Q K  + +R +G  ++S+SSPGFIYEPY PRE IPFW
Sbjct: 68  LTLRSTMAAELSIFMNDKRMLSTQLKGSSLSRAVGT-QISVSSPGFIYEPYEPREKIPFW 126

Query: 61  RRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKT 120
           +RWFTR GW+RTK D+ILELKSAYAI KLRKSGYSK +FY EA  +YKEIN L+ANGDK 
Sbjct: 127 QRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEINALIANGDKK 186

Query: 121 SLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ 180
           SLRKAVTEKMYSALKNEIKQRE+ W+ V WELIEP+I++RTLRARLIGVD  DLNKVFVQ
Sbjct: 187 SLRKAVTEKMYSALKNEIKQRETTWNKVYWELIEPVIRVRTLRARLIGVDPKDLNKVFVQ 246

Query: 181 LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
           LTLE  AKQKFEAYDSKG  VAGDK KEVLVRDIWVFEKS+FHPGAYWRLCGR+
Sbjct: 247 LTLEITAKQKFEAYDSKGSVVAGDKNKEVLVRDIWVFEKSMFHPGAYWRLCGRL 300

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485732|ref|XP_004157259.1| PREDICTED: probable 39S ribosomal protein L45, mitochondrial-like [Cucumis sativus]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 175/236 (74%), Positives = 202/236 (85%), Gaps = 2/236 (0%)

Query: 1   MTLRSSLAPKSLLYLNEK--RFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIP 58
           M + S++A + L++ +    R  T Q KAP QARQ   LKV++ SPGFIYEPY+PR+ +P
Sbjct: 65  MIICSAVAAEFLVFSHGIGIRLVTTQVKAPPQARQKIGLKVTMLSPGFIYEPYSPRQQLP 124

Query: 59  FWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGD 118
           FW+RWFTR GW+RTKDDIILELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+ANGD
Sbjct: 125 FWQRWFTRSGWKRTKDDIILELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIANGD 184

Query: 119 KTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVF 178
           KTSLRKAVTE MYSALKNEIK RES WS V WE+I P++K+RTLRARLIGVDR+DL KVF
Sbjct: 185 KTSLRKAVTENMYSALKNEIKLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLEKVF 244

Query: 179 VQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
           VQLTLE LAKQKFEAY+S+G  VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 245 VQLTLEILAKQKFEAYNSEGAVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435699|ref|XP_004135632.1| PREDICTED: uncharacterized protein LOC101211143 [Cucumis sativus]

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 171/216 (79%), Positives = 191/216 (88%)

Query: 19  RFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIIL 78
           R  T Q KAP QARQ   LKV++ SPGFIYEPY+PR+ +PFW+RWFTR GW+RTKDDIIL
Sbjct: 85  RLVTTQVKAPPQARQKIGLKVTMLSPGFIYEPYSPRQQLPFWQRWFTRSGWKRTKDDIIL 144

Query: 79  ELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEI 138
           ELKSAYAIAKLRK GYSK+KFY EA +LY+EINTL+ANGDKTSLRKAVTE MYSALKNEI
Sbjct: 145 ELKSAYAIAKLRKKGYSKKKFYEEAANLYREINTLIANGDKTSLRKAVTENMYSALKNEI 204

Query: 139 KQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG 198
           K RES WS V WE+I P++K+RTLRARLIGVDR+DL KVFVQLTLE LAKQKFEAY+S+G
Sbjct: 205 KLRESKWSKVYWEMIVPVVKIRTLRARLIGVDRSDLEKVFVQLTLEILAKQKFEAYNSEG 264

Query: 199 VTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
             VAGDK+KEVLVRDIWVFEKSLFH GA+WRLCGRI
Sbjct: 265 AVVAGDKSKEVLVRDIWVFEKSLFHEGAFWRLCGRI 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808779|ref|XP_002872273.1| protein translocase [Arabidopsis lyrata subsp. lyrata] gi|297318110|gb|EFH48532.1| protein translocase [Arabidopsis lyrata subsp. lyrata]

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 166/234 (70%), Positives = 198/234 (84%)

Query: 3   LRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRR 62
           LRS++  +SL + N+KR AT Q KAP Q ++ GA++VS+ SPGF+YEPYA +E I  WRR
Sbjct: 81  LRSTMIAESLPFTNDKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALQEKISIWRR 140

Query: 63  WFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSL 122
            FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK  FY EA++LYK+IN LMANGDK ++
Sbjct: 141 CFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINILMANGDKKTI 200

Query: 123 RKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLT 182
           RK VTE+MYSALKNEIKQRE+MW  V WE+IEP++K+RTL+ARLIG+DR DL K F+QLT
Sbjct: 201 RKNVTERMYSALKNEIKQREAMWDGVYWEMIEPVVKIRTLQARLIGIDRTDLKKAFIQLT 260

Query: 183 LEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 236
           LEFL KQKFEAYD+KG  VAGD+ KEVLVRDIWVFEKSLFH GAYWRLCGRIK+
Sbjct: 261 LEFLTKQKFEAYDAKGNVVAGDRNKEVLVRDIWVFEKSLFHTGAYWRLCGRIKL 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186526131|ref|NP_001119286.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] gi|332006297|gb|AED93680.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 164/234 (70%), Positives = 196/234 (83%)

Query: 3   LRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRR 62
           LRS++  + L ++NEKR AT Q KAP Q ++ GA++VS+ SPGF+YEPYA RE I  WRR
Sbjct: 63  LRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALREKISIWRR 122

Query: 63  WFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSL 122
            FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK  FY EA++LYK+IN  MANG+K ++
Sbjct: 123 CFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTI 182

Query: 123 RKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLT 182
           RK VTE+MYSALKNEIKQRE+MW  V WE++EP++K+RTL+ARLIG+DR DL K F+QLT
Sbjct: 183 RKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKAFIQLT 242

Query: 183 LEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 236
           LEFL KQKFEAYD+KG   AGDK KEVLVRDIWVFEKSLFH GAYWRLCGRIK+
Sbjct: 243 LEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCGRIKL 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334561|ref|NP_001078626.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana] gi|26451284|dbj|BAC42743.1| unknown protein [Arabidopsis thaliana] gi|332006296|gb|AED93679.1| Mitochondrial inner membrane translocase complex, subunit Tim44-related protein [Arabidopsis thaliana]

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 164/234 (70%), Positives = 196/234 (83%)

Query: 3   LRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRR 62
           LRS++  + L ++NEKR AT Q KAP Q ++ GA++VS+ SPGF+YEPYA RE I  WRR
Sbjct: 80  LRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALREKISIWRR 139

Query: 63  WFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSL 122
            FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK  FY EA++LYK+IN  MANG+K ++
Sbjct: 140 CFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTI 199

Query: 123 RKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLT 182
           RK VTE+MYSALKNEIKQRE+MW  V WE++EP++K+RTL+ARLIG+DR DL K F+QLT
Sbjct: 200 RKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKAFIQLT 259

Query: 183 LEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 236
           LEFL KQKFEAYD+KG   AGDK KEVLVRDIWVFEKSLFH GAYWRLCGRIK+
Sbjct: 260 LEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCGRIKL 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487996|ref|XP_002284948.2| PREDICTED: 39S ribosomal protein L45, mitochondrial-like [Vitis vinifera]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/202 (78%), Positives = 181/202 (89%)

Query: 35  GALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGY 94
           GALKVS+ SPG IYEPYAPRE I FW+RWFTR+GWRRTK+DI+LELKSAYA+AKLRK GY
Sbjct: 178 GALKVSMQSPGIIYEPYAPREPISFWKRWFTRNGWRRTKEDIVLELKSAYAVAKLRKIGY 237

Query: 95  SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 154
           S+QKFYTEAVDLYKEIN+ +AN  K SLRK+VTE MYSALKNEIKQRES W  V WE++E
Sbjct: 238 SRQKFYTEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEMVE 297

Query: 155 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 214
           P++K+RTLRAR+I +DRND+NK F+QLTLEFL KQKFEAYDSKG  VAGDK KEVLVRD+
Sbjct: 298 PVVKIRTLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVRDV 357

Query: 215 WVFEKSLFHPGAYWRLCGRIKI 236
           WVFE+SLFHPGAYWRLCGRI +
Sbjct: 358 WVFERSLFHPGAYWRLCGRISL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205045|emb|CBI34352.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 153/196 (78%), Positives = 175/196 (89%)

Query: 41  ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFY 100
           + SPG IYEPYAPRE I FW+RWFTR+GWRRTK+DI+LELKSAYA+AKLRK GYS+QKFY
Sbjct: 1   MQSPGIIYEPYAPREPISFWKRWFTRNGWRRTKEDIVLELKSAYAVAKLRKIGYSRQKFY 60

Query: 101 TEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMR 160
           TEAVDLYKEIN+ +AN  K SLRK+VTE MYSALKNEIKQRES W  V WE++EP++K+R
Sbjct: 61  TEAVDLYKEINSQIANSAKASLRKSVTENMYSALKNEIKQRESKWHKVYWEMVEPVVKIR 120

Query: 161 TLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKS 220
           TLRAR+I +DRND+NK F+QLTLEFL KQKFEAYDSKG  VAGDK KEVLVRD+WVFE+S
Sbjct: 121 TLRARMISIDRNDMNKAFIQLTLEFLTKQKFEAYDSKGCVVAGDKDKEVLVRDVWVFERS 180

Query: 221 LFHPGAYWRLCGRIKI 236
           LFHPGAYWRLCGRI +
Sbjct: 181 LFHPGAYWRLCGRISL 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:4010713974	313	AT5G27395 [Arabidopsis thalian	0.991	0.747	0.700	9.6e-89
FB|FBgn0263863	361	mRpL45 "mitochondrial ribosoma	0.779	0.509	0.287	3.6e-14
RGD|1304913	306	Mrpl45 "mitochondrial ribosoma	0.894	0.689	0.256	2.8e-09
ZFIN|ZDB-GENE-040426-1041	317	mrpl45 "mitochondrial ribosoma	0.800	0.596	0.24	4.1e-09
MGI|MGI:1914286	306	Mrpl45 "mitochondrial ribosoma	0.894	0.689	0.243	9.2e-09
UNIPROTKB|E1BTZ8	261	MRPL45 "Uncharacterized protei	0.754	0.681	0.260	1.3e-08
UNIPROTKB|F6XHK1	302	MRPL45 "Uncharacterized protei	0.745	0.582	0.262	9.3e-08
UNIPROTKB|E2R6H1	303	MRPL45 "Uncharacterized protei	0.745	0.580	0.262	9.4e-08
UNIPROTKB|F1MEP0	306	MRPL45 "39S ribosomal protein	0.885	0.683	0.241	1.7e-07
UNIPROTKB|Q3T142	306	MRPL45 "39S ribosomal protein	0.885	0.683	0.241	1.7e-07

TAIR|locus:4010713974 AT5G27395 [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 164/234 (70%), Positives = 196/234 (83%)

Query:     3 LRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRR 62
             LRS++  + L ++NEKR AT Q KAP Q ++ GA++VS+ SPGF+YEPYA RE I  WRR
Sbjct:    80 LRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALREKISIWRR 139

Query:    63 WFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSL 122
              FTR GWRRTK+D I EL+SAYAIAKLRK+GYSK  FY EA++LYK+IN  MANG+K ++
Sbjct:   140 CFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQMANGEKKTI 199

Query:   123 RKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLT 182
             RK VTE+MYSALKNEIKQRE+MW  V WE++EP++K+RTL+ARLIG+DR DL K F+QLT
Sbjct:   200 RKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTDLKKAFIQLT 259

Query:   183 LEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 236
             LEFL KQKFEAYD+KG   AGDK KEVLVRDIWVFEKSLFH GAYWRLCGRIK+
Sbjct:   260 LEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCGRIKL 313

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

FB|FBgn0263863 mRpL45 "mitochondrial ribosomal protein L45" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 57/198 (28%), Positives = 100/198 (50%)

Query:    41 ISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGYSKQK 98
             IS  G I+E Y P E     +   +  G ++  + +  + KS  A+ K+R     +S   
Sbjct:   109 ISCTGGIFEAYVPPEG-DGKKSIISTSGAKQKLEFLEKKSKSLMAVRKIRSYDENFSSDD 167

Query:    99 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIK 158
             F  EA D+Y + +T MA  DK  +R+ V+E+ Y  + + +K +     ++ W+ ++ +  
Sbjct:   168 FGAEAQDIYIQAHTHMAAKDKYKIREFVSERCYPEMMHNVKDK-----TIRWKFLQSLEP 222

Query:   159 MRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDK--TKEVLVRDIWV 216
              R + AR+  V   + N+ F Q+T+ F ++Q    YD  G  + G +  TK+VL  +  V
Sbjct:   223 PRVVHARVTEVITKE-NQ-FAQVTVRFHSQQMLAIYDRFGRLMHGSEIITKDVL--EYVV 278

Query:   217 FEKSLFHPGAYWRLCGRI 234
             FEK + +    WRL  +I
Sbjct:   279 FEKHISNEYGKWRLHDKI 296

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

RGD|1304913 Mrpl45 "mitochondrial ribosomal protein L45" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 58/226 (25%), Positives = 102/226 (45%)

Query:    14 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 72
             Y  EK F     KA     Q    + + ++    I++PY P E         +++G  + 
Sbjct:    50 YKTEKEFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQR 108

Query:    73 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 130
              + +   + S  AI K+++  + +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLRKNVASQLAIRKIKEFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHC 168

Query:   131 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 190
             +  +  E+K +   WS V  E +EP    + +  R  G+  N  N ++ Q+T+    +Q 
Sbjct:   169 FPDMVWELKYKTVRWSFV--ESLEPA---QVVHVRSSGLV-NQSN-MYGQVTVRLHTRQT 221

Query:   191 FEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
                YD  G  + G  D  K+VL  +  VFE+ L +P   WR+  +I
Sbjct:   222 LAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLMNPYGSWRMHAKI 265

GO:0005739 "mitochondrion" evidence=ISO

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1041 mrpl45 "mitochondrial ribosomal protein L45" [Danio rerio (taxid:7955)]

 Score = 153 (58.9 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 48/200 (24%), Positives = 92/200 (46%)

Query:    37 LKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK--SGY 94
             + +S +  G IY+PY P E         T++G ++  + +     S  AI K++   S +
Sbjct:    82 INISCTVAG-IYDPYVPPEGDARLST-LTKEGLKQRTEQLRQTAASQLAIRKIKDYDSTF 139

Query:    95 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE 154
             + ++F      ++ + +  +   +K  L   VTE+ Y  +      R + + ++ W  IE
Sbjct:   140 TSKEFPGIGQQIFIDAHAALTEFNKEKLHSLVTERCYPEMV-----RGNRYKTLRWRFIE 194

Query:   155 PIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDI 214
              +   R ++AR    D      ++ Q+T+   ++Q    YD  G  + GD+ +   V + 
Sbjct:   195 SLEPPRLVQARC--PDMISKGNLYGQVTVRMHSRQTLAIYDRFGRLMLGDEEEPRDVLEY 252

Query:   215 WVFEKSLFHPGAYWRLCGRI 234
              V E+ L +P   WRL G+I
Sbjct:   253 LVMERHLVNPYGRWRLHGKI 272

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

MGI|MGI:1914286 Mrpl45 "mitochondrial ribosomal protein L45" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 55/226 (24%), Positives = 100/226 (44%)

Query:    14 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 72
             Y  EK F     KA     Q    + + ++    I++PY P E         +++G  + 
Sbjct:    50 YKTEKEFLEYARKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSS-LSKEGLTQR 108

Query:    73 KDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 130
              + +     S  AI K+R+  + +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLRKNAASQLAIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHC 168

Query:   131 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 190
             +  +  ++K     + +V W  +E +   + +  R  G+  N  N ++ Q+T+    +Q 
Sbjct:   169 FPDMVWDLK-----YKTVRWGFVESLEPAQVVHVRCSGLV-NQSN-MYGQVTVRLHTRQT 221

Query:   191 FEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
                YD  G  + G  D  K+VL  +  VFE+ L +P   WR+  +I
Sbjct:   222 LAIYDRFGRLMYGQEDVPKDVL--EYVVFERHLMNPYGSWRMHAKI 265

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E1BTZ8 MRPL45 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 50/192 (26%), Positives = 89/192 (46%)

Query:    47 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAV 104
             I +PY P E         +++G ++  + +     S  A+ K++     +S + F   A 
Sbjct:    67 IIDPYVPPEGDARVTS-LSKEGLKQRMEKLKQTAASQLALRKVKDHDPNFSTKTFPEVAQ 125

Query:   105 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRA 164
             ++Y E +  +AN +K  L   VTE+ Y  +      R + + ++ W  +E +   R    
Sbjct:   126 EIYVEAHNSLANFNKQKLHSLVTERCYPDMV-----RGNRYKTIRWSFVESLEPPRVAHV 180

Query:   165 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKG-VTVAGDKT-KEVLVRDIWVFEKSLF 222
             R   V  N  N ++ Q+T+    +Q    YD  G +   G+K  K+VL  +  VFE+ L 
Sbjct:   181 RCTSVV-NQGN-LYGQVTVRMHTRQTLAIYDRFGRLMYGGEKLPKDVL--EYVVFERYLV 236

Query:   223 HPGAYWRLCGRI 234
             +P   WR+ G+I
Sbjct:   237 NPYGTWRMHGKI 248

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

UNIPROTKB|F6XHK1 MRPL45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 51/194 (26%), Positives = 93/194 (47%)

Query:    47 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAV 104
             I++ Y P E          ++G  +  + +  ++ S  +I K+R+    +  + F  +A 
Sbjct:    84 IFDAYVPPEGDARLSS-LAKEGLAQRSEQLKKKVASQLSIRKIREHDPNFKIKDFPEKAK 142

Query:   105 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP--IIKMRTL 162
             D++ E +  + N D   L   VTE  +  +  +IK +   WS V  E +EP  ++++R  
Sbjct:   143 DIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWSFV--ESLEPPQVVQVRC- 199

Query:   163 RARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKS 220
              + L+    N  N ++ Q+T+    +Q    YD  G  + G  D  ++VL  +  VFEK 
Sbjct:   200 -SNLL----NQGN-IYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKH 251

Query:   221 LFHPGAYWRLCGRI 234
             L +P   WR+ G+I
Sbjct:   252 LVNPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|E2R6H1 MRPL45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 9.4e-08, P = 9.4e-08
 Identities = 51/194 (26%), Positives = 93/194 (47%)

Query:    47 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKS--GYSKQKFYTEAV 104
             I++ Y P E          ++G  +  + +  ++ S  +I K+R+    +  + F  +A 
Sbjct:    84 IFDAYVPPEGDARLSS-LAKEGLAQRSEQLKKKVASQLSIRKIREHDPNFKIKDFPEKAK 142

Query:   105 DLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP--IIKMRTL 162
             D++ E +  + N D   L   VTE  +  +  +IK +   WS V  E +EP  ++++R  
Sbjct:   143 DIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKTVRWSFV--ESLEPPQVVQVRC- 199

Query:   163 RARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKS 220
              + L+    N  N ++ Q+T+    +Q    YD  G  + G  D  ++VL  +  VFEK 
Sbjct:   200 -SNLL----NQGN-IYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKH 251

Query:   221 LFHPGAYWRLCGRI 234
             L +P   WR+ G+I
Sbjct:   252 LVNPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|F1MEP0 MRPL45 "39S ribosomal protein L45, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 55/228 (24%), Positives = 103/228 (45%)

Query:    14 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 72
             Y  EK F     KA     Q    + + ++    I++ Y P E         +++G  + 
Sbjct:    50 YKTEKEFTEYARKAGLVIPQESLERPIHLACTASIFDAYVPPEGDARVSS-LSKEGLAQR 108

Query:    73 KDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 130
              + +   + S  +I ++++S   +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENC 168

Query:   131 YSALKNEIKQRESMWSSVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 188
             +  +  +IK +   WS V  E +EP  ++++R   + L+       +  + Q+T+    +
Sbjct:   169 FPDMVWDIKYKTVRWSFV--ESLEPPQVVQVRC--SSLV-----TKSNAYGQVTVRMHTR 219

Query:   189 QKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
             Q    YD  G  + G  D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   220 QTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKHLANPYGSWRMHGKI 265

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

UNIPROTKB|Q3T142 MRPL45 "39S ribosomal protein L45, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 55/228 (24%), Positives = 103/228 (45%)

Query:    14 YLNEKRFATAQPKAPAQARQMGALK-VSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRT 72
             Y  EK F     KA     Q    + + ++    I++ Y P E         +++G  + 
Sbjct:    50 YKTEKEFTEYARKAGLVIPQESLERPIHLACTASIFDAYVPPEGDARVSS-LSKEGLAQR 108

Query:    73 KDDIILELKSAYAIAKLRKS--GYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 130
              + +   + S  +I ++++S   +  + F  +A D++ E +  + N D   L   VTE  
Sbjct:   109 TERLKKNVASQLSIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENC 168

Query:   131 YSALKNEIKQRESMWSSVNWELIEP--IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAK 188
             +  +  +IK +   WS V  E +EP  ++++R   + L+       +  + Q+T+    +
Sbjct:   169 FPDMVWDIKYKTVSWSFV--ESLEPPQVVQVRC--SSLV-----TKSNTYGQVTVRMHTR 219

Query:   189 QKFEAYDSKGVTVAG--DKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 234
             Q    YD  G  + G  D  ++VL  +  VFEK L +P   WR+ G+I
Sbjct:   220 QTLAIYDRFGRLMYGQEDVPRDVL--EYVVFEKHLANPYGSWRMHGKI 265

GO:0005840 "ribosome" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130252 hypothetical protein (234 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
smart00978	147	smart00978, Tim44, Tim44 is an essential component	1e-23
pfam04280	146	pfam04280, Tim44, Tim44-like domain	9e-23
COG4395	281	COG4395, COG4395, Uncharacterized protein conserve	3e-04

>gnl|CDD|214950 smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane

 Score = 92.4 bits (230), Expect = 1e-23
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 82  SAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 141
            A    K    G+  ++F   A D +  I      GD  +LR+ +T +MY+ L  +I +R
Sbjct: 2   KALREIKRIDPGFDTERFLEGAKDAFPMIQEAWDRGDLETLRELLTPEMYNELAAQIAER 61

Query: 142 ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTV 201
           E+    V  + +  I  +    A L      D       +T+ F  +Q     D+KG  V
Sbjct: 62  EARGLFVENK-LLDIDVVVLDAALLEAWQEGD----GAVITVRFHGQQIDVTRDAKGGVV 116

Query: 202 AGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 232
            G + K     ++W F + L +    WRL G
Sbjct: 117 VGGEDKPKEFTEVWTFTRDL-NGDPNWRLSG 146

Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. Length = 147

>gnl|CDD|202957 pfam04280, Tim44, Tim44-like domain

 Score = 89.6 bits (223), Expect = 9e-23
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 9/151 (5%)

Query: 82  SAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 141
           +A    K     +  ++F   A + Y+ I    A GD  +LR+ +T ++Y      I +R
Sbjct: 2   AALRAIKAADPSFDVEEFLEGAREAYEMIQEAWARGDLETLRELLTPEVYEEFAAAIAER 61

Query: 142 ESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTV 201
           E+   + +  ++          A L+             +T+ F+A+      D+ G  V
Sbjct: 62  EAQGLTNDSTIV------GIRDAELLEAKMEGD---EAVVTVRFVAQLISVTDDASGEVV 112

Query: 202 AGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 232
            GD  + V V ++W FE+ L  P   WRL G
Sbjct: 113 EGDPDEPVEVTEVWTFERDLGSPDPNWRLVG 143

Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane. Length = 146

>gnl|CDD|226830 COG4395, COG4395, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 97  QKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI 156
            +F   A   Y+ I      GD+ +LR+ +T ++   L+ EI +RES             
Sbjct: 150 ARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERES------------- 196

Query: 157 IKMRTLRARLIGVDRNDLNKVFV-----QLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLV 211
            K  T ++  + + + D+ +  V       T+    +      D  G  V GD  K    
Sbjct: 197 -KGETNQSSFVTILQADIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEF 255

Query: 212 RDIWVFEKSLFHPGAYWRLCG 232
            ++W F +        W+L  
Sbjct: 256 AELWTFTRDTGSRDPNWKLAA 276

Length = 281

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
KOG4599	379	consensus Putative mitochondrial/chloroplast ribos	100.0
PF04280	147	Tim44: Tim44-like domain; InterPro: IPR007379 Tim4	100.0
PF07961	235	MBA1: MBA1-like protein; InterPro: IPR024621 Mba1	99.96
TIGR00984	378	3a0801s03tim44 mitochondrial import inner membrane	99.93
COG4395	281	Uncharacterized protein conserved in bacteria [Fun	99.9
KOG2580	459	consensus Mitochondrial import inner membrane tran	99.83
KOG4599	379	consensus Putative mitochondrial/chloroplast ribos	97.69
PF13355	117	DUF4101: Protein of unknown function (DUF4101)	95.84
PF12893	116	Lumazine_bd_2: Putative lumazine-binding; PDB: 3BL	94.53
PF12870	111	Lumazine_bd: Lumazine-binding domain; InterPro: IP	91.35

>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-37  Score=274.27  Aligned_cols=198  Identities=19%  Similarity=0.334  Sum_probs=183.7

Q ss_pred             HhhcCceeEeecccccccccccCCCCCCcccccccchhhHhhHHHHHHHHhhHHHHHHHHh----CCCChHhHHHHHHHH
Q 026572           31 ARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK----SGYSKQKFYTEAVDL  106 (236)
Q Consensus        31 ~~~~~~~~~~~~s~g~i~e~yvpp~~~~~~~~~~t~~g~~~~~~~l~~~~~s~~~l~~ir~----~~F~~~~F~~~A~~~  106 (236)
                      .|+-..++|+++|+|+|||+||||++++. .+.+++.|++++.+.+.+...+.++++.+++    .+|+.++|-+.|+++
T Consensus        99 Pr~~ne~~i~f~~~~gIfD~yVPPegdg~-~~~l~skg~~~~~~~~~k~~~~q~sir~i~~k~~~~~F~ik~f~~kakDi  177 (379)
T KOG4599|consen   99 PRKWNERPIHFSCTGGIFDAYVPPEGDGK-KSILSSKGLIQKTEILEKTVASQMSIRRIRDKDEIENFEIKDFGAKAKDI  177 (379)
T ss_pred             CccccccceEEEeecccccccCCCCCCcc-cchhcCcchhHHHHHHHHHHHHHhhhhhhccCCcccceeccccchHhHHH
Confidence            34455568999999999999999999998 7889999999999999999999999999998    489999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHhhhH---------------HHHHHHHHHHHHhhcCCCceeeeeecccccceEEEEEEeeeec
Q 026572          107 YKEINTLMANGDKTSLRKAVTE---------------KMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDR  171 (236)
Q Consensus       107 y~~i~~A~a~gD~~~L~~l~Te---------------~~y~~l~~~ik~r~~~g~~~~W~lv~~~~~~rvv~~r~i~i~~  171 (236)
                      |+++|.|+++.|...+..+++|               .||+.|....+.     .+++|+|+.+++++++|++||.+...
T Consensus       178 fIqaH~~l~~~de~kays~l~e~~fvhl~~~~~t~~~~flp~m~~k~K~-----~~vR~~~vs~leP~~vv~~rc~d~~~  252 (379)
T KOG4599|consen  178 FIQAHLCLNNSDEMKAYSFLTESEFVHLKCPSITNLLHFLPVMQEKVKK-----GTVRWSFVSVLEPSRVVYVRCDDDND  252 (379)
T ss_pred             HHHHHHHHhcChHHHHHHHhhccccccccCCCccchhhhccccchhhcc-----CceeEEEEeecccceeEEEEecCCcc
Confidence            9999999999999999999999               999999988653     68999999999999999999987654


Q ss_pred             ccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 026572          172 NDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK  235 (236)
Q Consensus       172 ~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~i~  235 (236)
                      . ..+.++|||||+|++|.+++||++|+++.|+++..+||+||+||+.|+.+.++.||++++|.
T Consensus       253 ~-s~n~~aqitvRkh~~q~Lavydrfg~lm~g~E~i~KDv~eyvvfe~hi~~~~g~wr~h~kiv  315 (379)
T KOG4599|consen  253 K-SGNFIAQITVRKHTRQCLAVYDRFGRLMFGSEDIKKDVLEYVVFENHIQNAYGRWRLHKKIV  315 (379)
T ss_pred             c-ccccceeeehHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHhhhhhhhhhhhccccc
Confidence            3 25799999999999999999999999999999999999999999999999999999999984

>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []

Probab=100.00  E-value=1.5e-31  Score=215.70  Aligned_cols=143  Identities=29%  Similarity=0.457  Sum_probs=121.5

Q ss_pred             HHHHHHHh--CCCChHhHHHHHHHHHHHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeecccccceE
Q 026572           84 YAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRT  161 (236)
Q Consensus        84 ~~l~~ir~--~~F~~~~F~~~A~~~y~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~~~~~rv  161 (236)
                      -+++.|++  |+|++..|+++|+++|..|++||++||++.|+++||+.+|+.|..+++.+...|.+      +..+.+.+
T Consensus         3 ~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~------~~~~~v~i   76 (147)
T PF04280_consen    3 SAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPLLTEELYERLQAEIKARRSRGEV------NDPEIVRI   76 (147)
T ss_dssp             HHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTTEE------EEEEEEEE
T ss_pred             hHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCHHHHHHHHHHHHHHHHcCCc------ccceEEEE
Confidence            35667776  99999999999999999999999999999999999999999999999999877653      44566777


Q ss_pred             EEEEEeeeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 026572          162 LRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK  235 (236)
Q Consensus       162 v~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~i~  235 (236)
                      ++++++++...   +.+++|||+|+++|+++++|++|++++|+++.++.+.|||+|+|++++++++|+|+|+.+
T Consensus        77 ~~~~i~~~~~~---~~~~~vtv~f~~~~~~~~~d~~G~ii~G~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i~q  147 (147)
T PF04280_consen   77 DNAEIVEAEQE---GNFDQVTVRFRSQQIDYVDDKDGEIIEGDPDKIQEFTEYWTFERDLGSPNPNWRLAGIQQ  147 (147)
T ss_dssp             EEEEEEEEEEE---TTEEEEEEEEEEEEEEEEETTTCTCCCCSTTS-EEEEEEEEEEE--TTCCCTEEEEEEE-
T ss_pred             EEEEeeeceee---CCEEEEEEEEEEEEEEEEECCCCcEeeCCCCCceEEEEEEEEEEeCCCCCCCEEEEEEeC
Confidence            77887776543   699999999999999999999999999999999999999999999999999999999853

Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.

>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]

Probab=99.96  E-value=1.2e-27  Score=206.63  Aligned_cols=188  Identities=25%  Similarity=0.385  Sum_probs=161.7

Q ss_pred             ceeEeecccccccccccCCCCCCccccccc--chhhHhhHHHHHHHHhhHHHHHHHHh-CCCCh--HhHHHHHHHHHHHH
Q 026572           36 ALKVSISSPGFIYEPYAPREAIPFWRRWFT--RDGWRRTKDDIILELKSAYAIAKLRK-SGYSK--QKFYTEAVDLYKEI  110 (236)
Q Consensus        36 ~~~~~~~s~g~i~e~yvpp~~~~~~~~~~t--~~g~~~~~~~l~~~~~s~~~l~~ir~-~~F~~--~~F~~~A~~~y~~i  110 (236)
                      +.+|.+.+.|...|+||||..   ++++|+  +..|+..+.++.....|++.|.++|. ++..+  ..|.+.|.|.|+.+
T Consensus         7 ~~~~~~~~iGv~~~~yipps~---~ps~~~~P~~~~~~l~rr~~~~~~Nt~~i~~fr~~~g~k~~f~~wk~~AiE~yv~~   83 (235)
T PF07961_consen    7 ISQFPIRHIGVMADTYIPPSF---LPSPFTSPKVWWKLLIRRLYMFALNTVSIAKFRRQTGKKPRFNEWKNKAIELYVQM   83 (235)
T ss_pred             cccCCcccceeccccccChhh---ccCcccChhHHHHHHHHHHHHHhhhhheeeehhhhcCCCCchhHHHHHHHHHHHHH
Confidence            347999999999999999996   234443  34577788888888899999998887 54443  57999999999999


Q ss_pred             HHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeecccccceEEEEEEeeeecccCCCceEEEEEEEEEEEE
Q 026572          111 NTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK  190 (236)
Q Consensus       111 ~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~~~~~rvv~~r~i~i~~~~~~~~~~qvtVrf~s~Q~  190 (236)
                      ++|||+||.+.|++.|+.++++.|.+++++++.. .+++|+|++..+.|++++.+.++++...  ..+.|++|+|+|+|+
T Consensus        84 NkaFA~~~~~~L~~~c~~~v~~sL~~R~~~~P~~-~kl~W~L~k~~~~PKvvs~~~~~~p~~~--~~~vQ~Vvk~~TkQ~  160 (235)
T PF07961_consen   84 NKAFAAGDLDKLRKICSSWVYESLAARIKQRPKN-SKLDWKLVKYNKNPKVVSFQAIPIPGGP--LEIVQFVVKFDTKQR  160 (235)
T ss_pred             HHHHHhccHHHHHHHhhHHHHHHHHHHHHhCCCC-CeeeEEEEEecCCCeEEEEeeeecCCCC--CeEEEEEEEEeeeEE
Confidence            9999999999999999999999999999999964 6899999999999999999999887653  469999999999999


Q ss_pred             EEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 026572          191 FEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  234 (236)
Q Consensus       191 l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~i  234 (236)
                      +...|+.+..+++   ..+||+||+||.++..  .+.|+|+|++
T Consensus       161 li~~~k~~~~~~~---~e~dvveyiV~~~d~~--t~e~~l~Gsv  199 (235)
T PF07961_consen  161 LIKVDKGSEKVEK---KERDVVEYIVFQCDPW--TNEWVLWGSV  199 (235)
T ss_pred             EEEeccccccCCc---cccceeeeEEEEEeCC--CCcEEEEEEe
Confidence            9989987776553   3579999999999865  4499999987

It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit

Probab=99.93  E-value=3.1e-24  Score=196.32  Aligned_cols=144  Identities=22%  Similarity=0.297  Sum_probs=123.3

Q ss_pred             HHhhHHHHHHHHh--CCCChHhHHHHHHHH-HHHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeecc
Q 026572           79 ELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP  155 (236)
Q Consensus        79 ~~~s~~~l~~ir~--~~F~~~~F~~~A~~~-y~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~  155 (236)
                      +...+.+|++|+.  |+|++..|+.+|++. |++|.+||++||.+.|++||++.+|+.|...|++|..+|.+++-     
T Consensus       224 ete~a~~l~eIk~~DPsFd~~~Fl~gar~aI~p~ILeAf~kGD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~-----  298 (378)
T TIGR00984       224 ETEVSEVLTEFKKIDPTFDKEHFLRFLREYIVPEILEAYVKGDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKG-----  298 (378)
T ss_pred             CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeee-----
Confidence            4455677888887  999999999999998 89999999999999999999999999999999999999886543     


Q ss_pred             cccceEEEEEEeeeecccCC--CceEEEEEEEEEEEEEEEEcCC-CceecCCCCCeeeeeEEEEEEEeCCC----CCCCe
Q 026572          156 IIKMRTLRARLIGVDRNDLN--KVFVQLTLEFLAKQKFEAYDSK-GVTVAGDKTKEVLVRDIWVFEKSLFH----PGAYW  228 (236)
Q Consensus       156 ~~~~rvv~~r~i~i~~~~~~--~~~~qvtVrf~s~Q~l~v~Dk~-G~lv~G~~~~~~dv~EywvFeR~l~~----~~~~W  228 (236)
                          ++|+++-++|..+.+.  ++.+.|+|+|.++|+.|++|++ |++|+|+++.++.+.|.|+|+|++..    +++.|
T Consensus       299 ----~iL~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGeVVeGd~d~I~~v~yvWtF~Rd~~~~~~~~~~~W  374 (378)
T TIGR00984       299 ----RILDIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGEVVAGDPDNIQRINYAWVFTRDVEELDNPETLGW  374 (378)
T ss_pred             ----EEeeecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCceeeCCCCceeEEEEEEEEEEcccccCCCCCCce
Confidence                3444444444433331  4689999999999999999998 99999999999999999999999863    67889


Q ss_pred             EEE
Q 026572          229 RLC  231 (236)
Q Consensus       229 rL~  231 (236)
                      ||.
T Consensus       375 rl~  377 (378)
T TIGR00984       375 KIL  377 (378)
T ss_pred             eec
Confidence            985

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.

>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.90  E-value=3e-23  Score=182.02  Aligned_cols=140  Identities=20%  Similarity=0.281  Sum_probs=121.7

Q ss_pred             HHHHHHh--CCCChHhHHHHHHHHHHHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeecccccceEE
Q 026572           85 AIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTL  162 (236)
Q Consensus        85 ~l~~ir~--~~F~~~~F~~~A~~~y~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~~~~~rvv  162 (236)
                      +++.+.+  |.|++..|++.|+.+|.+|++||.++|.++|++|+|+++|+.|++++.++...|.+..=      .   .|
T Consensus       136 g~~~v~~~~~~f~p~~fl~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev~~~~~~e~~e~~~~G~~~~s------s---fv  206 (281)
T COG4395         136 GARAVHNADPSFDPARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERESKGETNQS------S---FV  206 (281)
T ss_pred             chhhhhcCCcccchhHHHHHHHHHHHHHHHHhhhccHHHHHHhcCHHHHHHHHHHHhhhhhcCccccc------e---ec
Confidence            3455555  99999999999999999999999999999999999999999999999999888775332      2   22


Q ss_pred             EEEEeeeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEE
Q 026572          163 RARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGR  233 (236)
Q Consensus       163 ~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~  233 (236)
                      ..-..+|...+..++..++||+|.++-+...+|+.|++|+||++.+.++.|.|+|+|+.++.+++|.|.+.
T Consensus       207 ~~~~~di~~a~~~~~~~~atv~~~~~~i~~~~dr~G~vVdGd~~~~~e~~ElWTFtR~~~s~~p~W~LaaI  277 (281)
T COG4395         207 TILQADIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEFAELWTFTRDTGSRDPNWKLAAI  277 (281)
T ss_pred             chhhhhhhhccccCCceEEEEEEEeeeeeeeccccCceecCCCCcchhhhhheeeeccCCCCCCCceEEee
Confidence            22234445555567899999999999999999999999999999999999999999999999999999986

>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4e-20  Score=168.79  Aligned_cols=144  Identities=23%  Similarity=0.331  Sum_probs=124.1

Q ss_pred             HHhhHHHHHHHHh--CCCChHhHHHHHHHHH-HHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeecc
Q 026572           79 ELKSAYAIAKLRK--SGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEP  155 (236)
Q Consensus        79 ~~~s~~~l~~ir~--~~F~~~~F~~~A~~~y-~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~  155 (236)
                      +....-.+.+|++  |+||..+|+..+++.. ++|.+||-+||++.|+.||++..|+.+.+.+++++..|-         
T Consensus       298 ktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv---------  368 (459)
T KOG2580|consen  298 KTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGV---------  368 (459)
T ss_pred             hhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCe---------
Confidence            4444456777887  9999999999998765 679999999999999999999999999999999998765         


Q ss_pred             cccceEEEEEEeeeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCC--CC--CCCeEEE
Q 026572          156 IIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLF--HP--GAYWRLC  231 (236)
Q Consensus       156 ~~~~rvv~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~--~~--~~~WrL~  231 (236)
                      .-+-++++++-++|....+-.+.+.++|.|.+++++|++|.+|++++|++|.+..|.+.|||+|+..  +|  ++.|||.
T Consensus       369 ~~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQeI~~vRd~~GevveGd~d~i~~v~y~wvl~rd~~El~~d~~~~WRLl  448 (459)
T KOG2580|consen  369 YFDSKILDIRGVDIASGKMMEDGPVLIITFQAQEIMCVRDAKGEVVEGDPDKILRVYYAWVLCRDQDELNPDEYAAWRLL  448 (459)
T ss_pred             eecceeeeeccchhHHhhhhccCCEEEEEEeeEEEEEEEcCCCceecCCCCceeeEEeeeeeeccHhhcCcchhhhHHHH
Confidence            2356777777777766555568999999999999999999999999999999999999999999764  45  7789974

>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]

Probab=97.69  E-value=1e-05  Score=73.41  Aligned_cols=172  Identities=22%  Similarity=0.250  Sum_probs=124.3

Q ss_pred             ccccccchhhhhccccccccCCCCchHHHhhcCceeEeecccccccccccCCCCCCcccccccchhhHhhHHHHHHHHhh
Q 026572            3 LRSSLAPKSLLYLNEKRFATAQPKAPAQARQMGALKVSISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKS   82 (236)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~i~e~yvpp~~~~~~~~~~t~~g~~~~~~~l~~~~~s   82 (236)
                      .++||.+++.-+|+++             -+.|.++..+-|   ..|||.-.     +.+.+.          .-.++.|
T Consensus       208 ~~~t~~~~flp~m~~k-------------~K~~~vR~~~vs---~leP~~vv-----~~rc~d----------~~~~s~n  256 (379)
T KOG4599|consen  208 PSITNLLHFLPVMQEK-------------VKKGTVRWSFVS---VLEPSRVV-----YVRCDD----------DNDKSGN  256 (379)
T ss_pred             CCccchhhhccccchh-------------hccCceeEEEEe---ecccceeE-----EEEecC----------Ccccccc
Confidence            5789999999999998             456777877666   44554321     111110          0112255


Q ss_pred             HHHHHHHHhCCCChHhHHHHHHHHHHHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeecccccceEE
Q 026572           83 AYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTL  162 (236)
Q Consensus        83 ~~~l~~ir~~~F~~~~F~~~A~~~y~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~~~~~rvv  162 (236)
                      ++|+...|.-      +. ++.++|..++.++..+.  .+++=++|  |..|..+|+++..+|. ++|+++++..+++  
T Consensus       257 ~~aqitvRkh------~~-q~Lavydrfg~lm~g~E--~i~KDv~e--yvvfe~hi~~~~g~wr-~h~kivp~wi~~k--  322 (379)
T KOG4599|consen  257 FIAQITVRKH------TR-QCLAVYDRFGRLMFGSE--DIKKDVLE--YVVFENHIQNAYGRWR-LHKKIVPPWIPAK--  322 (379)
T ss_pred             cceeeehHHH------HH-HHHHHHHHHHHHhccCc--ccccchhH--HHHHHHhhhhhhhhhh-hcccccCcccccc--
Confidence            6666665541      11 88899999999999988  66777777  9999999999998885 8998876643333  


Q ss_pred             EEEEeeeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEeeC
Q 026572          163 RARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIKI  236 (236)
Q Consensus       163 ~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~i~~  236 (236)
                                  ...+.++++-+.+.+....|+..+.+..|+.     ..|..++|.++......|+|++.+.+
T Consensus       323 ------------qk~~~tl~l~~lt~~~~~~~~~~~~~~~tek-----~ke~~~~e~~~~~t~~~~~lk~~~kI  379 (379)
T KOG4599|consen  323 ------------QKAYKTLMLFILTMEKSEAYPAGPKEAVTEK-----FKECILKENDVEITILKGILKPQLKI  379 (379)
T ss_pred             ------------ccchheEEeehhccCchhhcccCCccchhhh-----hhhhhhhcccccccchhcccchhhcC
Confidence                        2578999999999999999998887776653     45555688888878889999987754

>PF13355 DUF4101: Protein of unknown function (DUF4101)

Probab=95.84  E-value=0.4  Score=37.37  Aligned_cols=96  Identities=17%  Similarity=0.213  Sum_probs=57.9

Q ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeecccccceEEEEEEeeeecccCCCceEEEEEEEEEEEEEEEEcC
Q 026572          117 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS  196 (236)
Q Consensus       117 gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~~~~~rvv~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk  196 (236)
                      .+.+.|.+++++.|++........-...|  .+|++.        +.+++..|....  ..-.+++|.-.-.-....|| 
T Consensus        20 ~~~~~L~~vl~g~ll~~w~~~a~~~~~~g--~y~~y~--------~~~~I~sv~~~~--~~~~ra~v~a~v~E~~~l~~-   86 (117)
T PF13355_consen   20 HDIDSLSEVLTGPLLSQWQDRAQWLKANG--WYWEYD--------HKLKIDSVEVFS--DSPNRATVEATVTESAQLYD-   86 (117)
T ss_pred             cchhHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEe--------eeeEEEEEEEcC--CCCCeEEEEEEEEEEEEEEe-
Confidence            45779999999999999998887776654  456652        122222222111  12334444444445566788 


Q ss_pred             CCceecC-CCCCeeeeeEEEEEEEeCCCCCCCeEEE
Q 026572          197 KGVTVAG-DKTKEVLVRDIWVFEKSLFHPGAYWRLC  231 (236)
Q Consensus       197 ~G~lv~G-~~~~~~dv~EywvFeR~l~~~~~~WrL~  231 (236)
                      .|++..+ +......|.+.  |.|.    ++.|+|+
T Consensus        87 ~g~~~~~~s~~~~~~vrY~--L~r~----~~~WkI~  116 (117)
T PF13355_consen   87 NGQPDNNPSYDSTLRVRYE--LVRQ----NGQWKIT  116 (117)
T ss_pred             CCccccCCCCCCcEEEEEE--EEEc----CCEEEec
Confidence            8888876 44444455543  3444    5779996

>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C

Probab=94.53  E-value=0.69  Score=35.27  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhhHHH--------------HHHHHHHHHHhh---cCCCceeeeeecccccceEEEE
Q 026572          102 EAVDLYKEINTLMANGDKTSLRKAVTEKM--------------YSALKNEIKQRE---SMWSSVNWELIEPIIKMRTLRA  164 (236)
Q Consensus       102 ~A~~~y~~i~~A~a~gD~~~L~~l~Te~~--------------y~~l~~~ik~r~---~~g~~~~W~lv~~~~~~rvv~~  164 (236)
                      ..++....-.+++.+||.+.|++.+.+++              .+++...++.+.   ..+.            ++....
T Consensus         5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------~~~~~i   72 (116)
T PF12893_consen    5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQ------------ERKESI   72 (116)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SST------------T-EEEE
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCC------------CceeEE
Confidence            34555666778889999999999998887              356667777652   1211            112222


Q ss_pred             EEeeeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 026572          165 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  234 (236)
Q Consensus       165 r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~i  234 (236)
                      ..+++.     ++.+.+.|.+...                   .....||++|.|.    ++.|+|..|+
T Consensus        73 ~~i~i~-----g~~A~a~v~~~~~-------------------~~~~~d~~~L~K~----dg~WkIv~k~  114 (116)
T PF12893_consen   73 LSIDID-----GDVASAKVEYEFP-------------------GFWFVDYFTLVKT----DGGWKIVSKV  114 (116)
T ss_dssp             EEEEEE-----TTEEEEEEEEEEE-------------------TEEEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EEEEEE-----CCEEEEEEEEEEC-------------------CCceEEEEEEEEE----CCEEEEEEEe
Confidence            223333     4677777776531                   1257999999997    8999999986

>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria

Probab=91.35  E-value=3  Score=30.51  Aligned_cols=31  Identities=13%  Similarity=0.145  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhhHHHHH
Q 026572          102 EAVDLYKEINTLMANGDKTSLRKAVTEKMYS  132 (236)
Q Consensus       102 ~A~~~y~~i~~A~a~gD~~~L~~l~Te~~y~  132 (236)
                      ..+++-.....|+.+||.+....++++..-.
T Consensus         8 ~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~   38 (111)
T PF12870_consen    8 TPEEVVKNFFDALKNGDYEKAYAYLSPESRE   38 (111)
T ss_dssp             -HHHHHHHHHHHHCTT-HHHHHHTB--TT--
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHhhCccccc
Confidence            3456677788899999999999999988774

Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	2e-16
3qk9_A	222	Mitochondrial import inner membrane translocase S	3e-09

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Length = 194

 Score = 74.1 bits (181), Expect = 2e-16
 Identities = 29/162 (17%), Positives = 63/162 (38%), Gaps = 14/162 (8%)

Query: 74  DDIILELKSAYAIAKLRK--SGYSKQKFYTEAV-DLYKEINTLMANGDKTSLRKAVTEKM 130
             +  + + +  + ++ +    + K +F  +   D+   +   M +G+   L+    E  
Sbjct: 30  GGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEAT 89

Query: 131 YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQK 190
           YS L + I+Q +++    +   I  I  +     +++             L + F A+  
Sbjct: 90  YSQLAHPIQQAKALGLQFHSR-ILDIDNVDLAMGKMVEQ--------GPVLIITFQAQLV 140

Query: 191 FEAYDSKGVTVAGDKTKEVLVRDIWVFEKSL--FHPGAYWRL 230
               + KG  V GD  K + +  +W   +     +P A WRL
Sbjct: 141 MVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL 182

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Length = 222

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%)

Query: 79  ELKSAYAIAKLRKSGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNE 137
           E    Y+  KL    +S + F     +    EI      GD   L+K  +E  ++    +
Sbjct: 60  ESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQ 119

Query: 138 IKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSK 197
            K  +      +  +++ I  +  + A+L+             L +   A++       K
Sbjct: 120 QKIFKEQDVYADGRILD-IRGVEIVSAKLLAPQDI------PVLVVGCRAQEINLYRKKK 172

Query: 198 -GVTVAGDKTKEVLVRDIWVFEKSL----FHPGAYWRL 230
            G   AGD+   ++     VF +            W++
Sbjct: 173 TGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKI 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	99.98
3qk9_A	222	Mitochondrial import inner membrane translocase S	99.95
3fka_A	120	Uncharacterized NTF-2 like protein; structural gen	88.57
3duk_A	125	NTF2-like protein of unknown function; structural	87.65
3blz_A	128	NTF2-like protein of unknown function; structural	84.79

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13

Probab=99.98  E-value=1.3e-31  Score=225.81  Aligned_cols=148  Identities=18%  Similarity=0.271  Sum_probs=128.1

Q ss_pred             HHHHhhHHHHHHHHh--CCCChHhHHHHHHHH-HHHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeee
Q 026572           77 ILELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELI  153 (236)
Q Consensus        77 ~~~~~s~~~l~~ir~--~~F~~~~F~~~A~~~-y~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv  153 (236)
                      ..+...+.++++|++  |+|+++.|+++|+++ |.+|++||++||++.|++||||+||+.|.+++++|..+|.+.+++++
T Consensus        33 f~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr~~~t~~~~~~~~~~i~~r~~~g~~~~~~~v  112 (194)
T 2cw9_A           33 FSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRIL  112 (194)
T ss_dssp             THHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEEE
T ss_pred             cCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhcCHHHHHHHHHHHHHHHHCCCccccEEE
Confidence            356677889999998  999999999999998 89999999999999999999999999999999999999887766554


Q ss_pred             cccccceEEEEEEeeeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCC--eEEE
Q 026572          154 EPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAY--WRLC  231 (236)
Q Consensus       154 ~~~~~~rvv~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~--WrL~  231 (236)
                      .      +.+++++++.   ..+..+++||+|+++|+.|++|++|++|+|+++.+.+|.|+|+|+|+++.++++  |+|+
T Consensus       113 ~------i~~~el~~a~---~~~~~~~itV~f~~~~i~~~rd~~G~vveG~~~~~~~v~e~W~f~R~~~~~~p~~~W~L~  183 (194)
T 2cw9_A          113 D------IDNVDLAMGK---MVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLL  183 (194)
T ss_dssp             E------EEEEEEEEEE---EETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEEE
T ss_pred             E------ecccEEEEEE---EeCCeeEEEEEEEEEEEEEEECCCCCEecCCCCCceEEEEEEEEEEeCCCCCCCCCEEEE
Confidence            2      2233333332   223679999999999999999999999999999999999999999999876654  9999


Q ss_pred             EE
Q 026572          232 GR  233 (236)
Q Consensus       232 g~  233 (236)
                      |.
T Consensus       184 ~i  185 (194)
T 2cw9_A          184 DI  185 (194)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A

Probab=99.95  E-value=1.5e-27  Score=204.47  Aligned_cols=147  Identities=17%  Similarity=0.163  Sum_probs=120.2

Q ss_pred             HHHhhHHHHHHHHh--CCCChHhHHHHHHHH-HHHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeec
Q 026572           78 LELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIE  154 (236)
Q Consensus        78 ~~~~s~~~l~~ir~--~~F~~~~F~~~A~~~-y~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~  154 (236)
                      .....+.+|++|++  |+|++.+|+++|++. |.+|++||++||.+.|++|||+.+|+.|.+.|++|..+|.++      
T Consensus        57 ~~te~a~~l~~Ik~~DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~------  130 (222)
T 3qk9_A           57 AETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYA------  130 (222)
T ss_dssp             ---CCHHHHTTCC-----CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEE------
T ss_pred             CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEe------
Confidence            34455677888887  999999999999998 578999999999999999999999999999999999988754      


Q ss_pred             ccccceEEEEEEeeeecccCC--CceEEEEEEEEEEEEEEEEc-CCCceecCCCCCeeeeeEEEEEEEeCCCCC----CC
Q 026572          155 PIIKMRTLRARLIGVDRNDLN--KVFVQLTLEFLAKQKFEAYD-SKGVTVAGDKTKEVLVRDIWVFEKSLFHPG----AY  227 (236)
Q Consensus       155 ~~~~~rvv~~r~i~i~~~~~~--~~~~qvtVrf~s~Q~l~v~D-k~G~lv~G~~~~~~dv~EywvFeR~l~~~~----~~  227 (236)
                         +.++++++-++|..+.+.  +..++|||+|.++|+.|++| ++|++|+|+++.+..+.|+|+|+|+.+..+    ++
T Consensus       131 ---d~~il~I~~vdI~~a~~~~~~~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R~~~~~d~~~tp~  207 (222)
T 3qk9_A          131 ---DGRILDIRGVEIVSAKLLAPQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEG  207 (222)
T ss_dssp             ---CCEEEEEEEEEEEEEEECSSSCCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEECCC--------C
T ss_pred             ---eeeEeeecceEEEEEEEecCCCceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEEcCccCCCCCCCC
Confidence               344555555555544443  48899999999999999999 899999999999999999999999997544    78


Q ss_pred             eEEEEE
Q 026572          228 WRLCGR  233 (236)
Q Consensus       228 WrL~g~  233 (236)
                      |+|.+.
T Consensus       208 WkL~ei  213 (222)
T 3qk9_A          208 WKILEF  213 (222)
T ss_dssp             EEEEEE
T ss_pred             cEEehh
Confidence            999875

>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}

Probab=88.57  E-value=5.9  Score=29.25  Aligned_cols=91  Identities=15%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhhHHH--------------HHHHHHHHHHhhcC-CCceeeeeecccccceEEEEEEe
Q 026572          103 AVDLYKEINTLMANGDKTSLRKAVTEKM--------------YSALKNEIKQRESM-WSSVNWELIEPIIKMRTLRARLI  167 (236)
Q Consensus       103 A~~~y~~i~~A~a~gD~~~L~~l~Te~~--------------y~~l~~~ik~r~~~-g~~~~W~lv~~~~~~rvv~~r~i  167 (236)
                      .+++...-.+++.++|.+.|+...+|.+              .+++.. +...+.. +..         ..-+++.   +
T Consensus        11 I~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~~~~g~~~~~~~~~~~~-v~~~p~~~~~~---------~~~~i~~---I   77 (120)
T 3fka_A           11 LTALVETYVMAMTRGDRPALERIFFGKASEVGHYEGELLWNSRDAFIA-MCEDAADAETD---------PFWAISS---V   77 (120)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEEEETTEEEEEEHHHHHH-HHHHHCCSSCC---------CCEEEEE---E
T ss_pred             HHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEEecCCcEEEcCHHHHHh-hcCCccCCCCC---------ceEEEEE---E
Confidence            3445556677889999999999988887              456666 6533321 110         0112222   2


Q ss_pred             eeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 026572          168 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  234 (236)
Q Consensus       168 ~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~i  234 (236)
                      +|.     ++.+.+.|.+.       +       .     ...++||.+|.|.    ++.|+|..|+
T Consensus        78 ~i~-----gd~A~a~v~~~-------~-------~-----~~~f~D~~~L~k~----dg~WkIv~K~  116 (120)
T 3fka_A           78 SVQ-----GDIAMLHVEND-------W-------A-----GMRFDDFLTVLLH----EGSWRIVSKV  116 (120)
T ss_dssp             EEE-----TTEEEEEEEEE-------E-------T-----TEEEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EEE-----CCEEEEEEEEE-------c-------C-----CCceEEEEEEEEe----CCEEEEEEEE
Confidence            232     34555555531       1       1     2368999999999    8999999986

>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0

Probab=87.65  E-value=5.8  Score=29.54  Aligned_cols=92  Identities=11%  Similarity=0.183  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHhhhHHH---------------HHHHHHHHHHhhcCCCceeeeeecccccceEEEEEEe
Q 026572          103 AVDLYKEINTLMANGDKTSLRKAVTEKM---------------YSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLI  167 (236)
Q Consensus       103 A~~~y~~i~~A~a~gD~~~L~~l~Te~~---------------y~~l~~~ik~r~~~g~~~~W~lv~~~~~~rvv~~r~i  167 (236)
                      .+++......++.++|.+.|+..++|.+               ++++...+..+... ...         ..+++.   +
T Consensus        14 I~~~l~~y~~g~~~~D~~~l~~~f~pda~~~~~~~G~~l~~~~~~e~~~~v~~~~p~-~~~---------~~~I~~---I   80 (125)
T 3duk_A           14 ITEVLNVYMNAAESGTGEEMSAAFHKDATIFGYVGDKLAFNGPIKDLYDWHNSNGPA-KNV---------QSRITN---I   80 (125)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHGGGEEEEEEEEEEETTEEEEEEETHHHHHHHHHHCCC-TTC---------EEEEEE---E
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHhCCCCcEEEEEcCCCEEeeCCHHHHHHHHhccCCC-Ccc---------cceEEE---E
Confidence            4556667778889999999999988876               25555555544211 110         111221   2


Q ss_pred             eeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 026572          168 GVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI  234 (236)
Q Consensus       168 ~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~~~~~WrL~g~i  234 (236)
                      ++.     ++.+.+.|++.  .           ..|     ..++||.+|.|.    ++.|+|..|+
T Consensus        81 ~i~-----gd~A~a~v~~~--~-----------~~~-----~~f~D~l~L~k~----dg~WkIv~K~  120 (125)
T 3duk_A           81 DIV-----GTVAHARVEAE--N-----------WTN-----FKFSDLFLLLKL----DGKWTIVNKV  120 (125)
T ss_dssp             EEE-----TTEEEEEEEEE--C-----------SSS-----CCEEEEEEEEEE----TTEEEEEEEE
T ss_pred             EEE-----CCEEEEEEEEE--E-----------cCC-----CeEEEEEEEEEe----CCEEEEEEEE
Confidence            222     34555555431  0           011     357999999999    7899999986

>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14

Probab=84.79  E-value=9  Score=28.15  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhhHHHH
Q 026572          102 EAVDLYKEINTLMANGDKTSLRKAVTEKMY  131 (236)
Q Consensus       102 ~A~~~y~~i~~A~a~gD~~~L~~l~Te~~y  131 (236)
                      ..+++......|+..+|.+.|+...+|.+.
T Consensus        13 aI~~~~~~y~~a~~~~D~~~l~~~f~~da~   42 (128)
T 3blz_A           13 AIVEVLSKYNEGGKKADSTIMRPAFSSQAT   42 (128)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHGGGEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHhhCCCcE
Confidence            445677788899999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d2cw9a1	182	d.17.4.13 (A:270-451) Translocase of inner mitocho	2e-20
d2fxta1	192	d.17.4.13 (A:234-425) Translocase of inner mitocho	9e-18

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 2e-20
 Identities = 27/157 (17%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 81  KSAYAIAKLRK--SGYSKQKFYTEAV-DLYKEINTLMANGDKTSLRKAVTEKMYSALKNE 137
           + +  + ++ +    + K +F  +   D+   +   M +G+   L+    E  YS L + 
Sbjct: 26  EMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHP 85

Query: 138 IKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSK 197
           I+Q +++    +  +++            + +    + +    L + F A+      + K
Sbjct: 86  IQQAKALGLQFHSRILDIDN---------VDLAMGKMVEQGPVLIITFQAQLVMVVRNPK 136

Query: 198 GVTVAGDKTKEVLVRDIWVFEKSL--FHPGAYWRLCG 232
           G  V GD  K + +  +W   +     +P A WRL  
Sbjct: 137 GEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRLLD 173

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.1 bits (187), Expect = 9e-18
 Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 15/160 (9%)

Query: 79  ELKSAYAIAKLRK--SGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALK 135
           E +S+   ++ +     +S + F     +    EI      GD   L+K  +E  ++   
Sbjct: 34  ETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYA 93

Query: 136 NEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD 195
            + K  +      +  +++ I  +  + A+L+             L +   A++      
Sbjct: 94  AQQKIFKEQDVYADGRILD-IRGVEIVSAKLLAPQD------IPVLVVGCRAQEINLYRK 146

Query: 196 SK-GVTVAGDKTKEVLVRDIWVFEKSLF----HPGAYWRL 230
            K G   AGD+   ++     VF +            W++
Sbjct: 147 KKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKI 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d2cw9a1	182	Translocase of inner mitochondrial membrane TIMM44	100.0
d2fxta1	192	Translocase of inner mitochondrial membrane TIMM44	99.97
d2rcda1	127	Uncharacterized protein ECA3500 {Pectobacterium at	89.39
d3bb9a1	121	Uncharacterized protein Sfri1973 {Shewanella frigi	86.14
d2r4ia1	122	Uncharacterized protein CHU142 {Cytophaga hutchins	84.3
d2gxfa1	128	Hypothetical protein YybH {Bacillus subtilis [TaxI	84.26

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-32  Score=224.86  Aligned_cols=149  Identities=18%  Similarity=0.298  Sum_probs=129.2

Q ss_pred             HHHHHhhHHHHHHHHh--CCCChHhHHHHHHH-HHHHHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeee
Q 026572           76 IILELKSAYAIAKLRK--SGYSKQKFYTEAVD-LYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL  152 (236)
Q Consensus        76 l~~~~~s~~~l~~ir~--~~F~~~~F~~~A~~-~y~~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~l  152 (236)
                      +..+.....++++|++  |+|+.+.|+++|+. +|.+|++||++||++.|++|||+.+|+.|.++|++|...|.++.+++
T Consensus        21 ~~~~~~~~~~l~~i~~~Dp~F~~~~Fl~gAk~~~~~~i~~A~~~gD~~~L~~llt~~~~~~f~~~i~~r~~~g~~~~~~~  100 (182)
T d2cw9a1          21 LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRI  100 (182)
T ss_dssp             TTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHHTTCEECCEE
T ss_pred             CCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHhhHHHHHHHHHHHHHHHHCCCeeeeee
Confidence            3455667788999998  99999999999985 89999999999999999999999999999999999999988766554


Q ss_pred             ecccccceEEEEEEeeeecccCCCceEEEEEEEEEEEEEEEEcCCCceecCCCCCeeeeeEEEEEEEeCCC--CCCCeEE
Q 026572          153 IEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFH--PGAYWRL  230 (236)
Q Consensus       153 v~~~~~~rvv~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~Dk~G~lv~G~~~~~~dv~EywvFeR~l~~--~~~~WrL  230 (236)
                               ++++.+.|....+.+..+++||+|+++|+.++||++|++|+|+++.++++.|+|+|+|+++.  |+++|+|
T Consensus       101 ---------i~i~~~ei~~a~~~~~~~~itV~F~~~qi~~~~D~~G~iveG~~d~i~~v~e~W~F~R~~~s~~Pn~~W~L  171 (182)
T d2cw9a1         101 ---------LDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWALCRDQDELNPYAAWRL  171 (182)
T ss_dssp             ---------EEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEEEEEEEEECTTCSCGGGCEEE
T ss_pred             ---------cccccceeEEEEeeCCceEEEEEEEEEehhheecCCCCEecCCCCCceEEEEEEEEEEcCcCCCCCCCEEE
Confidence                     44444444433344678999999999999999999999999999999999999999999975  5566999


Q ss_pred             EEE
Q 026572          231 CGR  233 (236)
Q Consensus       231 ~g~  233 (236)
                      .+.
T Consensus       172 ~~i  174 (182)
T d2cw9a1         172 LDI  174 (182)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            986

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.5e-30  Score=214.03  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=127.7

Q ss_pred             HhhHHHHHHHHh--CCCChHhHHHHHHHHHH-HHHHHHHcCCHHHHHHhhhHHHHHHHHHHHHHhhcCCCceeeeeeccc
Q 026572           80 LKSAYAIAKLRK--SGYSKQKFYTEAVDLYK-EINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPI  156 (236)
Q Consensus        80 ~~s~~~l~~ir~--~~F~~~~F~~~A~~~y~-~i~~A~a~gD~~~L~~l~Te~~y~~l~~~ik~r~~~g~~~~W~lv~~~  156 (236)
                      ...+.++++||+  |+|+..+|+.+|++.|. +|++||++||++.|++||++.+|+.|.+.|++|..+|.+++++++ .+
T Consensus        35 te~~~~l~~ik~~Dp~F~~~~Fl~gak~~~~p~Il~Af~~GD~~~Lk~lls~~vy~~f~~~I~~r~~~g~~~~~~ii-~I  113 (192)
T d2fxta1          35 TESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRIL-DI  113 (192)
T ss_dssp             CCSHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHBCHHHHHHHHHHHHHHHHTTEECCEEEC-CC
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhHHHHHHHHHHHHHHHHcCCeeeEEEe-cc
Confidence            345567899998  99999999999999885 899999999999999999999999999999999999999888876 34


Q ss_pred             ccceEEEEEEeeeecccCCCceEEEEEEEEEEEEEEEEc-CCCceecCCCCCeeeeeEEEEEEEeCCCCC----CCeEEE
Q 026572          157 IKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYD-SKGVTVAGDKTKEVLVRDIWVFEKSLFHPG----AYWRLC  231 (236)
Q Consensus       157 ~~~rvv~~r~i~i~~~~~~~~~~qvtVrf~s~Q~l~v~D-k~G~lv~G~~~~~~dv~EywvFeR~l~~~~----~~WrL~  231 (236)
                      ..+.++++++..      .+.++++||+|+|+|+.|++| ++|++|+|+++.++.|.|+|+|+|++...+    +.|+|.
T Consensus       114 ~~~~I~~a~~~~------~~~~~~itV~F~t~qi~~~~d~k~G~IieGd~d~i~~v~d~WtF~R~~~~~~pn~~~~W~Li  187 (192)
T d2fxta1         114 RGVEIVSAKLLA------PQDIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQIDDDETEGWKIL  187 (192)
T ss_dssp             EEEEEEEEEEET------TTTEEEEEEEEEECEEECCEETTTBTTSSCSCCCCCCEEEEEEEECCSSSCTTSSSTTCEEE
T ss_pred             ceeEEEEEEEec------CCCeEEEEEEEEEEEEEEEEecCCCcEecCCCCccEEEEEEEEEEEcCccCCCCCCCCEEEE
Confidence            555555554321      357999999999999999987 589999999999999999999999998544    459998


Q ss_pred             EEe
Q 026572          232 GRI  234 (236)
Q Consensus       232 g~i  234 (236)
                      .-.
T Consensus       188 E~~  190 (192)
T d2fxta1         188 EFV  190 (192)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            753

>d2rcda1 d.17.4.18 (A:1-127) Uncharacterized protein ECA3500 {Pectobacterium atrosepticum [TaxId: 29471]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: BxeB1374-like
domain: Uncharacterized protein ECA3500
species: Pectobacterium atrosepticum [TaxId: 29471]

Probab=89.39  E-value=2.3  Score=29.34  Aligned_cols=35  Identities=6%  Similarity=0.147  Sum_probs=30.4

Q ss_pred             ChHhHHHHHHHHHHHHHHHHHcCCHHHHHHhhhHH
Q 026572           95 SKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEK  129 (236)
Q Consensus        95 ~~~~F~~~A~~~y~~i~~A~a~gD~~~L~~l~Te~  129 (236)
                      +..+..++..+++....+||.+||.+.|..+.++.
T Consensus         7 ~~~~~~aeI~a~~~~~~~A~~~~D~~~l~~l~a~D   41 (127)
T d2rcda1           7 NQADVLADVTAAFYRYEKALTGNDVAVLDELFWHD   41 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHBCCS
T ss_pred             CChhHHHHHHHHHHHHHHHHHcCCHHHHHHhhcCC
Confidence            34567788889999999999999999999998765

>d3bb9a1 d.17.4.16 (A:27-147) Uncharacterized protein Sfri1973 {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: SO0125-like
domain: Uncharacterized protein Sfri1973
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.14  E-value=3.1  Score=27.94  Aligned_cols=28  Identities=14%  Similarity=0.359  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhhHH
Q 026572          102 EAVDLYKEINTLMANGDKTSLRKAVTEK  129 (236)
Q Consensus       102 ~A~~~y~~i~~A~a~gD~~~L~~l~Te~  129 (236)
                      .+.++..+.++|+.+||.+.+..+++|+
T Consensus         4 a~~~v~~~~~~A~~~~D~~~~~~l~a~D   31 (121)
T d3bb9a1           4 AAGNVVKQFHAALQMGNEAIVRQSLAAN   31 (121)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHEEEE
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhCCC
Confidence            3567889999999999999999999876

>d2r4ia1 d.17.4.15 (A:1-122) Uncharacterized protein CHU142 {Cytophaga hutchinsonii [TaxId: 985]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: CHU142-like
domain: Uncharacterized protein CHU142
species: Cytophaga hutchinsonii [TaxId: 985]

Probab=84.30  E-value=4.3  Score=27.26  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHhhhHHH
Q 026572          102 EAVDLYKEINTLMANGDKTSLRKAVTEKM  130 (236)
Q Consensus       102 ~A~~~y~~i~~A~a~gD~~~L~~l~Te~~  130 (236)
                      +-.++...+.+|+.++|.+.|..++++.+
T Consensus         6 ~I~~~~~~~~~A~~~~D~~~l~~l~~~d~   34 (122)
T d2r4ia1           6 VILDCEKKLLTAIQNNDVESLEVLLHDDL   34 (122)
T ss_dssp             HHTHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHhhhcccE
Confidence            45678899999999999999999998875

>d2gxfa1 d.17.4.22 (A:1-128) Hypothetical protein YybH {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: YybH-like
domain: Hypothetical protein YybH
species: Bacillus subtilis [TaxId: 1423]

Probab=84.26  E-value=3.2  Score=28.63  Aligned_cols=30  Identities=17%  Similarity=0.193  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhhHHH
Q 026572          101 TEAVDLYKEINTLMANGDKTSLRKAVTEKM  130 (236)
Q Consensus       101 ~~A~~~y~~i~~A~a~gD~~~L~~l~Te~~  130 (236)
                      ++.++++....+||+++|.+.|..+.++.+
T Consensus         3 ~~I~~l~~~~~~A~~~~D~d~~~~l~~~Da   32 (128)
T d2gxfa1           3 QQLKDIISACDLAIQNEDFDTLMNYYSEDA   32 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHhhccCC
Confidence            456788999999999999999999988653