Citrus Sinensis ID: 026585

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MEEDEEEEVLFEDFEDEALMDDDSNDFEDEYVEEESEAYVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Secondary Structure (PSIPRED)
cccHHHHHHHccccHHHHccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHcccEEEEEEEEccccccccccccccEEEEEEEccccEEEEEEccHHHHHcccccccccccccccEEEEcccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccccccHHccccccccccHHHccccccccccccccccEEEEccccHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEccHHHHHHccccEEEEEEEcccccccccccccEEEEEEEccccccEEEEEEEcHcccccccccccccHHHccHEEcccHHHcEEEEEEEcc
Coil and Loop (DISEMBL)
MEEDEEeevlfedfedealmdddsndfedeyveeeseayvgdggagggislagtwWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKmsnksgspsmEDIEAFCTTYRARLDEAeiaksipentslevsspgvervvriplelerfKDRAMYVKYVGEtvttgspsesdgvFRLISFDmetecctwgladvrinrekagkgrplskkqrEWRLNTTFDSLRLVRLHSDC
Flexible Loop (DISEMBL)
MEEDEEEEVLfedfedealmdddSNDFEDEYVEEESeayvgdggaGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAfrtlpnstikvriekmsnksgspsmedIEAFCTTYRARLDEAEiaksipentslevsspgvervvriplelerfkdraMYVKYVGetvttgspsesdGVFRLISFDMETECCTWgladvrinrekagkgrplskkqrewrlnttfdslrlvrlhsdc
Low Complexity Region (SEG)
MeedeeeevlfedfedeALMDDDSNDFedeyveeeseayvgdggagggislagTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Disordered region (IsUnstruct)
**************************************YVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRI**************IEAFCTTYRARLDEA*****************GVERVVRIPLELERFKDRAMYVKYVGETVTTG****SDGVFRLISFDMETECCTWGLADVRIN****************WRLNTTFDSLRLV******
Disordered Region (DISOPRED)
******E**LFEDFEDEALMDDDSNDFEDE****************GGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGET*T***PSESDGVFRLISFDMETECCTWGLADVR*******************RLNTTFDSLRLVRLHSDC
Disordered Region (DISEMBL)
*********LFEDFEDEALMDDDSNDFEDEYVEEESEAYVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKM********MEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREK*********KQREWRLNTTFDSLRLVRLHSDC
Disordered Region (DISPRO)
************DFEDEALMDDDSNDFEDEYVEEESEAYVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEDEEEEVLFEDFEDEALMDDDSNDFEDEYVEEESEAYVGDGGAGGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q2IPZ0	171	Ribosome maturation facto	yes	no	0.313	0.432	0.341	0.0009

>sp|Q2IPZ0|RIMP_ANADE Ribosome maturation factor RimP OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rimP PE=3 SV=1

 Score = 43.9 bits (102), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 97  NKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDR 156
           +K+G   ++D +A   T    LD   +A  I     LEVSSPG++R +R P + +R+  +
Sbjct: 47  DKAGGVGIDDCQAVSKTVEPILD---VADFIEPAYDLEVSSPGLDRPLRKPRDFDRYAGQ 103

Query: 157 AMYVKYVGETVTT--GSPS 173
            ++VK  G    T  GSP+
Sbjct: 104 RVHVKAYGPVAGTAPGSPA 122

Required for maturation of 30S ribosomal subunits.
Anaeromyxobacter dehalogenans (strain 2CP-C) (taxid: 290397)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
449518382	383	PREDICTED: uncharacterized protein LOC10	1.0	0.616	0.755	3e-97
449462174	312	PREDICTED: uncharacterized protein LOC10	1.0	0.756	0.755	6e-97
224062938	313	predicted protein [Populus trichocarpa]	0.991	0.747	0.740	6e-87
225457765	315	PREDICTED: uncharacterized protein LOC10	0.940	0.704	0.752	3e-86
147801247	231	hypothetical protein VITISV_013332 [Viti	0.805	0.822	0.8	3e-84
255570398	306	conserved hypothetical protein [Ricinus	0.995	0.767	0.736	7e-84
356509322	307	PREDICTED: uncharacterized protein LOC10	0.792	0.609	0.743	5e-77
356518601	304	PREDICTED: uncharacterized protein LOC10	0.792	0.615	0.743	9e-77
297842485	318	hypothetical protein ARALYDRAFT_476875 [	0.779	0.578	0.728	1e-75
30699240	323	uncharacterized protein [Arabidopsis tha	0.779	0.569	0.723	5e-75

>gi|449518382|ref|XP_004166221.1| PREDICTED: uncharacterized protein LOC101228874 [Cucumis sativus]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 179/237 (75%), Positives = 212/237 (89%), Gaps = 1/237 (0%)

Query: 1   MEEDEEEEVLFEDFEDEALMDDDSND-FEDEYVEEESEAYVGDGGAGGGISLAGTWWDKE 59
           + EDEE++VLF++FE + +M+DD  D FE+EY+E+ +E Y+GDGG GGGISLAGTWWDK+
Sbjct: 147 VSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGGEGGGISLAGTWWDKQ 206

Query: 60  ALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLD 119
           ALAIAE+V LSF GDLKIYAF+T+ NST++VRIEK+S KSGSP+MEDIEAF TTYRARLD
Sbjct: 207 ALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNMEDIEAFSTTYRARLD 266

Query: 120 EAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF 179
           +AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK+RAMYVKY  E VT  S SESDGVF
Sbjct: 267 DAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNEVVTASSSSESDGVF 326

Query: 180 RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC 236
           +L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKKQREWRL T FDSLRLVRL+SDC
Sbjct: 327 KLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDC 383

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462174|ref|XP_004148816.1| PREDICTED: uncharacterized protein LOC101204078 [Cucumis sativus]

 Score =  359 bits (921), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 179/237 (75%), Positives = 212/237 (89%), Gaps = 1/237 (0%)

Query: 1   MEEDEEEEVLFEDFEDEALMDDDSND-FEDEYVEEESEAYVGDGGAGGGISLAGTWWDKE 59
           + EDEE++VLF++FE + +M+DD  D FE+EY+E+ +E Y+GDGG GGGISLAGTWWDK+
Sbjct: 76  VSEDEEDDVLFDEFEQDEIMEDDGEDYFEEEYMEDNAEVYLGDGGEGGGISLAGTWWDKQ 135

Query: 60  ALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLD 119
           ALAIAE+V LSF GDLKIYAF+T+ NST++VRIEK+S KSGSP+MEDIEAF TTYRARLD
Sbjct: 136 ALAIAEEVILSFHGDLKIYAFKTVSNSTVQVRIEKLSTKSGSPNMEDIEAFSTTYRARLD 195

Query: 120 EAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF 179
           +AE+AKS+PEN SLEVSSPGVERVVRIP EL+RFK+RAMYVKY  E VT  S SESDGVF
Sbjct: 196 DAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERAMYVKYTNEVVTASSSSESDGVF 255

Query: 180 RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSDC 236
           +L+SFD+E +CCTWG+ADV+INREKAGKGRPLSKKQREWRL T FDSLRLVRL+SDC
Sbjct: 256 KLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDC 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062938|ref|XP_002300938.1| predicted protein [Populus trichocarpa] gi|222842664|gb|EEE80211.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (834), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 174/235 (74%), Positives = 208/235 (88%), Gaps = 1/235 (0%)

Query: 2   EEDEEEEVLFEDFEDEALMDDDSNDFEDEY-VEEESEAYVGDGGAGGGISLAGTWWDKEA 60
           +ED+EE++LF+DFEDEA+MD D + F+DE  +E+E+E YVGDGG GGGI+LAGTWWDKEA
Sbjct: 78  DEDKEEQLLFDDFEDEAVMDGDDDYFDDEEFLEDEAELYVGDGGGGGGIALAGTWWDKEA 137

Query: 61  LAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDE 120
           L IAE+VC +FD +L+IYAF+TL NSTI+VRIE+++NKSGSP+MEDIEAF TTYRARLDE
Sbjct: 138 LKIAEEVCSTFDRELEIYAFKTLSNSTIQVRIERLTNKSGSPNMEDIEAFSTTYRARLDE 197

Query: 121 AEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR 180
           AE+AK+I EN +LEVSSPGVERVVRIP +L+RFKDRAMYVKYV E     S SESDGV R
Sbjct: 198 AELAKTITENITLEVSSPGVERVVRIPEDLDRFKDRAMYVKYVNEADAKDSSSESDGVLR 257

Query: 181 LISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD 235
           L+SFDMET+ CTWGLADVR+NREKAGKGRPLSKKQREWRL+T F SLRLVR++ +
Sbjct: 258 LVSFDMETKYCTWGLADVRVNREKAGKGRPLSKKQREWRLDTPFHSLRLVRVYPE 312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457765|ref|XP_002264003.1| PREDICTED: uncharacterized protein LOC100266148 [Vitis vinifera] gi|302142766|emb|CBI19969.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/226 (75%), Positives = 197/226 (87%), Gaps = 4/226 (1%)

Query: 14  FEDEALMDDDSNDFEDE----YVEEESEAYVGDGGAGGGISLAGTWWDKEALAIAEDVCL 69
           FEDEALMDDD ++ +++    Y+ +++E YVGDGG GGGISLAGTWWDKEAL +AE+V +
Sbjct: 89  FEDEALMDDDDDNDDEDWEDEYLADDAEVYVGDGGEGGGISLAGTWWDKEALLMAEEVSM 148

Query: 70  SFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE 129
           SF+GDLKIYAF+TL NSTI+VRIEK+SNKSGSPSM DIEAF + YRA+LDEAEIA S+PE
Sbjct: 149 SFEGDLKIYAFKTLANSTIQVRIEKLSNKSGSPSMTDIEAFSSIYRAKLDEAEIAGSVPE 208

Query: 130 NTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETE 189
           N SLEVSSPGVERVV+IP EL+RFK+R MYVKYV E V  GS  ESDG+FRL+SFD+ET 
Sbjct: 209 NLSLEVSSPGVERVVQIPQELDRFKERPMYVKYVTEGVAPGSTIESDGIFRLVSFDLETN 268

Query: 190 CCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD 235
           CCTWGLADVRINR KAGKGRPLSKKQREWRLNT FDSL LVRL+S+
Sbjct: 269 CCTWGLADVRINRAKAGKGRPLSKKQREWRLNTPFDSLCLVRLYSE 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801247|emb|CAN61512.1| hypothetical protein VITISV_013332 [Vitis vinifera]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 152/190 (80%), Positives = 170/190 (89%)

Query: 46  GGGISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSME 105
           GGGISLAGTWWDKEAL +AE+V +SF+GDLKIYAF+TL NSTI+VRIEK+SNKSGSPSM 
Sbjct: 41  GGGISLAGTWWDKEALLMAEEVSMSFEGDLKIYAFKTLANSTIQVRIEKLSNKSGSPSMT 100

Query: 106 DIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGE 165
           DIEAF + YRA+LDEAEIA S+PEN SLEVSSPGVERVV+IP EL+RFK+R MYVKYV E
Sbjct: 101 DIEAFSSIYRAKLDEAEIAGSVPENLSLEVSSPGVERVVQIPQELDRFKERPMYVKYVTE 160

Query: 166 TVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFD 225
            V  GS  ESDG+FRL+SFD+ET CCTWGLADVRINR KAGKGRPLSKKQREWRLNT FD
Sbjct: 161 GVAPGSTIESDGIFRLVSFDLETNCCTWGLADVRINRAKAGKGRPLSKKQREWRLNTPFD 220

Query: 226 SLRLVRLHSD 235
           SL LVRL+S+
Sbjct: 221 SLCLVRLYSE 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570398|ref|XP_002526158.1| conserved hypothetical protein [Ricinus communis] gi|223534535|gb|EEF36234.1| conserved hypothetical protein [Ricinus communis]

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 173/235 (73%), Positives = 207/235 (88%)

Query: 1   MEEDEEEEVLFEDFEDEALMDDDSNDFEDEYVEEESEAYVGDGGAGGGISLAGTWWDKEA 60
           M+ ++EE++LF+D  DEAL+D +  DFEDEY+E+E+E YVGDG  GGGI+LAGTWWD E 
Sbjct: 71  MDNEDEEQLLFDDLGDEALIDGEDEDFEDEYLEDEAELYVGDGAGGGGIALAGTWWDIEV 130

Query: 61  LAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDE 120
           L +AE+VC SFDG+LK+YAF+TL NSTI+VRIE+++N+SGSP+MEDIEAF TTYR  LDE
Sbjct: 131 LRLAEEVCKSFDGELKLYAFKTLSNSTIQVRIERLTNRSGSPTMEDIEAFSTTYRTWLDE 190

Query: 121 AEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFR 180
           AE+AK+IP N +LEVSSPGVER+VRIP EL+RFKDR+MYVKY  ET    SPSE+DGVFR
Sbjct: 191 AELAKTIPTNIALEVSSPGVERIVRIPEELDRFKDRSMYVKYASETSGMESPSENDGVFR 250

Query: 181 LISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD 235
           LISFD+ETECCTWGLADVRINREK+GKGRPLSKKQREWRLNT FDSL LVRL+S+
Sbjct: 251 LISFDIETECCTWGLADVRINREKSGKGRPLSKKQREWRLNTRFDSLLLVRLYSE 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509322|ref|XP_003523399.1| PREDICTED: uncharacterized protein LOC100783320 [Glycine max]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 162/187 (86%)

Query: 49  ISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIE 108
           ISLAGTWWDK+ALAIA++V LSFDG+L+IYAFRTL N TI+VRIE +S KSGSPS+EDIE
Sbjct: 120 ISLAGTWWDKKALAIAKEVTLSFDGELQIYAFRTLVNCTIQVRIENLSKKSGSPSLEDIE 179

Query: 109 AFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVT 168
           AF  TYRA+LDEAE+AKS+P+N  LEVSSPGVER+VRIP +L+RFK+R MYVKY      
Sbjct: 180 AFSATYRAKLDEAELAKSVPDNICLEVSSPGVERIVRIPDDLDRFKERPMYVKYAINDDL 239

Query: 169 TGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLR 228
               +E DGVFRL SFDMET+CCTWGLADV++NR+KAGKGRPL+KKQREWRL+T FDSLR
Sbjct: 240 NNPAAEGDGVFRLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKKQREWRLSTPFDSLR 299

Query: 229 LVRLHSD 235
            VRLHSD
Sbjct: 300 FVRLHSD 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518601|ref|XP_003527967.1| PREDICTED: uncharacterized protein LOC100803868 [Glycine max]

 Score =  292 bits (747), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 160/187 (85%)

Query: 49  ISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIE 108
           ISL GTWWDK+ALAIA++V LSFDG+L+IYAFRTL N TI+VRIE +S KSGSPSMEDIE
Sbjct: 117 ISLTGTWWDKKALAIAKEVTLSFDGELQIYAFRTLVNCTIQVRIENLSKKSGSPSMEDIE 176

Query: 109 AFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVT 168
           AF TTYRA+LDEAEIAK +P+N  LEVSSPGVER+VRIP +L+RFKDR MYVKY      
Sbjct: 177 AFSTTYRAKLDEAEIAKVVPDNICLEVSSPGVERIVRIPDDLDRFKDRPMYVKYAINDDQ 236

Query: 169 TGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLR 228
               +E DGVF+L SFDMET+CCTWGLADV++NR+KAGKGRPL+KKQ EWRL+T FDSLR
Sbjct: 237 NNPAAEGDGVFKLESFDMETKCCTWGLADVKVNRQKAGKGRPLNKKQSEWRLSTPFDSLR 296

Query: 229 LVRLHSD 235
            VRLHSD
Sbjct: 297 FVRLHSD 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842485|ref|XP_002889124.1| hypothetical protein ARALYDRAFT_476875 [Arabidopsis lyrata subsp. lyrata] gi|297334965|gb|EFH65383.1| hypothetical protein ARALYDRAFT_476875 [Arabidopsis lyrata subsp. lyrata]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 159/188 (84%), Gaps = 4/188 (2%)

Query: 49  ISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIE 108
           I LAGT WDKEALA+AE VC SFDGDL IYAF+TLPNSTI+VRIE+++NK GSP+MEDIE
Sbjct: 135 IKLAGTLWDKEALALAEKVCESFDGDLGIYAFKTLPNSTIQVRIERLTNKFGSPTMEDIE 194

Query: 109 AFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVT 168
           A+ T YRA+L EA +AKSIP+N SLEVSSPGVERVVRIP +L+R+KDR MYV+Y  E   
Sbjct: 195 AYSTIYRAKLAEAGLAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDRPMYVRYTNEDTE 254

Query: 169 TGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLR 228
           T    E DG+FRLISFD+E + C WG+AD R+NREKAGKGRPLSKKQREWRL T F+SLR
Sbjct: 255 T----EGDGIFRLISFDVEAKSCIWGIADTRVNREKAGKGRPLSKKQREWRLETAFESLR 310

Query: 229 LVRLHSDC 236
           LVRLHS+C
Sbjct: 311 LVRLHSEC 318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30699240|ref|NP_849898.1| uncharacterized protein [Arabidopsis thaliana] gi|62320812|dbj|BAD93751.1| hypothetical protein [Arabidopsis thaliana] gi|110742469|dbj|BAE99153.1| hypothetical protein [Arabidopsis thaliana] gi|114050645|gb|ABI49472.1| At1g77122 [Arabidopsis thaliana] gi|332197817|gb|AEE35938.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 159/188 (84%), Gaps = 4/188 (2%)

Query: 49  ISLAGTWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIE 108
           I LAGT WDK ALA+A  VC SFDGDL IYAF+TLPNSTI+VRIE+++NK GSP+MEDIE
Sbjct: 140 IKLAGTLWDKVALALAVKVCESFDGDLGIYAFKTLPNSTIQVRIERLTNKFGSPTMEDIE 199

Query: 109 AFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVT 168
           AF T YRA+L EAE+AKSIP+N SLEVSSPGVERVVRIP +L+R+KDR MYV+Y  E   
Sbjct: 200 AFSTIYRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDRPMYVRYTNEDTE 259

Query: 169 TGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLR 228
           T    E DG+FRL+SFD+E + C WG+AD+R+NREKAGKGRPLSKKQREWRL T F+SLR
Sbjct: 260 T----EGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKKQREWRLETAFESLR 315

Query: 229 LVRLHSDC 236
           LVRLHS+C
Sbjct: 316 LVRLHSEC 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:1005716723	323	AT1G77122 "AT1G77122" [Arabido	0.758	0.554	0.721	1.3e-68
TAIR|locus:2033263	305	AT1G69210 "AT1G69210" [Arabido	0.754	0.583	0.438	2.1e-36

TAIR|locus:1005716723 AT1G77122 "AT1G77122" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 132/183 (72%), Positives = 155/183 (84%)

Query:    54 TWWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTT 113
             T WDK ALA+A  VC SFDGDL IYAF+TLPNSTI+VRIE+++NK GSP+MEDIEAF T 
Sbjct:   145 TLWDKVALALAVKVCESFDGDLGIYAFKTLPNSTIQVRIERLTNKFGSPTMEDIEAFSTI 204

Query:   114 YRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPS 173
             YRA+L EAE+AKSIP+N SLEVSSPGVERVVRIP +L+R+KDR MYV+Y  E   T    
Sbjct:   205 YRAKLAEAELAKSIPDNISLEVSSPGVERVVRIPQDLDRYKDRPMYVRYTNEDTET---- 260

Query:   174 ESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLH 233
             E DG+FRL+SFD+E + C WG+AD+R+NREKAGKGRPLSKKQREWRL T F+SLRLVRLH
Sbjct:   261 EGDGIFRLVSFDVEAKICIWGIADIRVNREKAGKGRPLSKKQREWRLETAFESLRLVRLH 320

Query:   234 SDC 236
             S+C
Sbjct:   321 SEC 323

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2033263 AT1G69210 "AT1G69210" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 79/180 (43%), Positives = 114/180 (63%)

Query:    56 WDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYR 115
             W +  L+IA  V    + DL+++AF+T P   I VR++K+S + G P+M+++E F   ++
Sbjct:   128 WGERVLSIAAQVLKQSEKDLELFAFKTSPRGYIYVRLDKLSTEYGCPTMDELEEFSREFK 187

Query:   116 ARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSES 175
              RLD+A   K IPE+ +LEVSSPG ER++R+P +L RFKD  M V YV ET      +  
Sbjct:   188 KRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMTVSYVEET--NSRKAVK 245

Query:   176 DGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD 235
              GVF L S D E++ C W LADVR NR+   KGRPLS+KQ++ R+   F   + + L+ D
Sbjct:   246 SGVFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLRITLPFADHKKINLYLD 305


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       194   0.00076  111 3  11 22  0.47    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  19.77u 0.08s 19.85t   Elapsed:  00:00:02
  Total cpu time:  19.78u 0.08s 19.86t   Elapsed:  00:00:03
  Start:  Mon May 20 16:45:21 2013   End:  Mon May 20 16:45:24 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
pfam02576	140	pfam02576, DUF150, Uncharacterized BCR, YhbC famil	5e-09
PRK14635	162	PRK14635, PRK14635, hypothetical protein; Provisio	3e-06
COG0779	153	COG0779, COG0779, Uncharacterized protein conserve	2e-05
PRK00092	154	PRK00092, PRK00092, ribosome maturation protein Ri	8e-05

>gnl|CDD|217116 pfam02576, DUF150, Uncharacterized BCR, YhbC family COG0779

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 84  PNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 143
               +++ I+K     G  +++D E       A LD  +    IPE   LEVSSPG+ER 
Sbjct: 23  RGWVLRIYIDK----DGGVTLDDCEEVSRAISALLDVEDP---IPEAYFLEVSSPGLERP 75

Query: 144 VRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINR 202
           ++      RF  +   VK     V+   P +    F     +++ +  T  + D    R
Sbjct: 76  LKTERHFARFIGK--LVK-----VSLKEPIDGRKNFTGKLLEVDGDTVTIEVDDKERKR 127

Length = 140

>gnl|CDD|184774 PRK14635, PRK14635, hypothetical protein; Provisional

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 13/115 (11%)

Query: 75  LKIYAFRT--LPN-STIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPE-N 130
           +K+Y+ +    PN S I+V ++ + +  GS S+ +    C     +L E E+ +  P+ +
Sbjct: 20  VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLE----CEQVSRKLKE-ELERISPDLD 74

Query: 131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFD 185
            +L+VSS G ER +R+P +L+RF  R + V+ V  +  +      +G+FRL++ D
Sbjct: 75  FTLKVSSAGAERKLRLPEDLDRF--RGIPVRLVFRSEESE--KWQEGIFRLVNRD 125

Length = 162

>gnl|CDD|223850 COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 84  PNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERV 143
            +S +++ I+K     G  +++D         A LD  +    I     LEVSSPG++R 
Sbjct: 35  RDSVLRIYIDK----EGGVTLDDCADVSRAISALLDVED---PIEGAYFLEVSSPGLDRP 87

Query: 144 VRIPLELERFKDRAMYVK 161
           ++      RF    + VK
Sbjct: 88  LKTAEHFARFIGEKVKVK 105

Length = 153

>gnl|CDD|234627 PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 20/108 (18%)

Query: 85  NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVV 144
           +ST+++ I+K     G   ++D E       A LD  +    IP   +LEVSSPG++R  
Sbjct: 35  DSTLRIYIDK----EGGIDLDDCEEVSRQISAVLDVEDP---IPGAYTLEVSSPGLDR-- 85

Query: 145 RIPLELERFKDRAMYVKYVGETV--TTGSPSESDGVF--RLISFDMET 188
             PL     K R  + +++G  V      P +    F   L++ D ET
Sbjct: 86  --PL----KKARD-FRRFIGREVKVKLYEPIDGRKKFQGILLAVDGET 126

Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
PRK14633	150	hypothetical protein; Provisional	100.0
PRK14640	152	hypothetical protein; Provisional	100.0
PRK14634	155	hypothetical protein; Provisional	100.0
PRK14647	159	hypothetical protein; Provisional	100.0
PRK14643	164	hypothetical protein; Provisional	100.0
PRK14632	172	hypothetical protein; Provisional	100.0
COG0779	153	Uncharacterized protein conserved in bacteria [Fun	100.0
PRK14646	155	hypothetical protein; Provisional	100.0
PRK14636	176	hypothetical protein; Provisional	100.0
PRK14631	174	hypothetical protein; Provisional	100.0
PRK14638	150	hypothetical protein; Provisional	100.0
PRK00092	154	ribosome maturation protein RimP; Reviewed	100.0
PRK14639	140	hypothetical protein; Provisional	100.0
PRK14635	162	hypothetical protein; Provisional	100.0
PRK14641	173	hypothetical protein; Provisional	100.0
PF02576	141	DUF150: Uncharacterised BCR, YhbC family COG0779;	100.0
PRK14630	143	hypothetical protein; Provisional	100.0
PRK02001	152	hypothetical protein; Validated	100.0
PRK14642	197	hypothetical protein; Provisional	100.0
PRK14637	151	hypothetical protein; Provisional	100.0
PRK14645	154	hypothetical protein; Provisional	100.0
PRK14644	136	hypothetical protein; Provisional	99.97
cd01734	83	YlxS_C YxlS is a Bacillus subtilis gene of unknown	99.85

>PRK14633 hypothetical protein; Provisional

Probab=100.00  E-value=2.5e-37  Score=257.54  Aligned_cols=143  Identities=20%  Similarity=0.247  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEec
Q 026585           58 KEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSS  137 (236)
Q Consensus        58 ~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVSS  137 (236)
                      +++.++++|+++++|++|+.++|...++++|||+||+    ++||||+||+.+||+|+++||+.+   +|+++|+|||||
T Consensus         4 ~~i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~ID~----~~Gv~lddC~~vSr~i~~~LD~~d---~i~~~Y~LEVSS   76 (150)
T PRK14633          4 DDLYEIVEPITADLGYILWGIEVVGSGKLTIRIFIDH----ENGVSVDDCQIVSKEISAVFDVED---PVSGKYILEVSS   76 (150)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEEEeC----CCCCCHHHHHHHHHHHHHHhccCc---CCCCCeEEEEeC
Confidence            6789999999999999999999987766899999998    789999999999999999999988   999999999999


Q ss_pred             CCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCccccc
Q 026585          138 PGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQ  215 (236)
Q Consensus       138 PGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~  215 (236)
                      ||++|||++++||+||+|++|+|+++       .++++++.|  +|.+++++++++.+.            .|+      
T Consensus        77 PGldRpL~~~~~f~r~~G~~v~V~~~-------~~~~~~~~~~G~L~~v~~~~i~l~~~------------~~~------  131 (150)
T PRK14633         77 PGMNRQIFNIIQAQALVGFNVKAVTL-------APVGSQTKFKGVLERVEGNNVILNLE------------DGK------  131 (150)
T ss_pred             CCCCCCCCCHHHHHHhCCCeEEEEEe-------cccCCcEEEEEEEEEEeCCEEEEEEc------------CCc------
Confidence            99999999999999999999999999       677889999  999999987766331            111      


Q ss_pred             cceeeeeccccccceEEEec
Q 026585          216 REWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       216 ~~~~l~ipf~~I~karL~~e  235 (236)
                         .+.|||++|++|||+++
T Consensus       132 ---~~~i~~~~I~ka~l~~~  148 (150)
T PRK14633        132 ---EISFDFDELKKLRVSPD  148 (150)
T ss_pred             ---EEEEEhHHeeeEEEecc
Confidence               36899999999999875

>PRK14640 hypothetical protein; Provisional

Probab=100.00  E-value=4.4e-37  Score=256.48  Aligned_cols=143  Identities=19%  Similarity=0.245  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEE
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV  135 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEV  135 (236)
                      -+++.++++|+++++|++|+.+++...+ +++|||+||+    ++|||++||+.+||+|+++||+.+   +|+++|+|||
T Consensus         5 ~~~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~----~~gv~lddC~~vSr~is~~LD~~d---~i~~~Y~LEV   77 (152)
T PRK14640          5 EQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG----ENGVSVENCAEVSHQVGAIMDVED---PITEEYYLEV   77 (152)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhcccc---cCCCCeEEEE
Confidence            3578899999999999999999987765 7999999998    788999999999999999999988   9999999999


Q ss_pred             ecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCccc
Q 026585          136 SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSK  213 (236)
Q Consensus       136 SSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~k  213 (236)
                      ||||++|||++++||+||+|++|+|+++       .++++++.|  +|.+++++++++.+             +|+    
T Consensus        78 SSPGl~RpL~~~~~f~r~~G~~v~V~l~-------~~~~~~k~~~G~L~~v~~~~v~l~~-------------~~~----  133 (152)
T PRK14640         78 SSPGLDRPLFKVAQFEKYVGQEAAVTLR-------MATNNRRKFKGVIKAVQGDMITLTV-------------DGK----  133 (152)
T ss_pred             eCCCCCCcCCCHHHHHHhCCCeEEEEEe-------cccCCceEEEEEEEEEeCCEEEEEE-------------CCe----
Confidence            9999999999999999999999999999       677889999  99999998776632             122    


Q ss_pred             cccceeeeeccccccceEEEec
Q 026585          214 KQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       214 k~~~~~l~ipf~~I~karL~~e  235 (236)
                           .+.|||++|++|||.++
T Consensus       134 -----~~~i~~~~I~ka~l~~~  150 (152)
T PRK14640        134 -----DEVLAFTNIQKANIVPN  150 (152)
T ss_pred             -----EEEEEhHHeeeEEEecc
Confidence                 25799999999999864

>PRK14634 hypothetical protein; Provisional

Probab=100.00  E-value=7e-37  Score=256.13  Aligned_cols=143  Identities=20%  Similarity=0.213  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCC--CChhHHHHHHHHHHHhhhhhhccCCCCCCeEE
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGS--PSMEDIEAFCTTYRARLDEAEIAKSIPENTSL  133 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~gg--vsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~L  133 (236)
                      .+++.++++|+++++|++|+.++|...+ +++|||+||+    ++|  ||||||+.+||+|++.||+.+   +|+++|+|
T Consensus         6 ~~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~----~~g~~v~lddC~~vSr~is~~LD~~d---~i~~~Y~L   78 (155)
T PRK14634          6 LPDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRR----SSGSDVSLDDCAGFSGPMGEALEASQ---LLTEAYVL   78 (155)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEEC----CCCCcccHHHHHHHHHHHHHHhcccc---cCCCCeEE
Confidence            4689999999999999999999998765 7999999999    566  999999999999999999988   99999999


Q ss_pred             EEecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCc
Q 026585          134 EVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPL  211 (236)
Q Consensus       134 EVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~  211 (236)
                      ||||||++|||++++||+||+|++|+|+++       .+.++++.|  +|.+++++.+++.+             +|+  
T Consensus        79 EVSSPGldRpL~~~~~f~r~~G~~V~V~l~-------~~~~~~k~~~G~L~~~~~~~v~l~~-------------~~~--  136 (155)
T PRK14634         79 EISSPGIGDQLSSDRDFQTFRGFPVEVSHR-------DDDGSEQRLEGLLLERNEDHLQINI-------------RGR--  136 (155)
T ss_pred             EEeCCCCCCcCCCHHHHHHhCCCeEEEEEe-------cCCCCeEEEEEEEEEEeCCEEEEEE-------------CCE--
Confidence            999999999999999999999999999999       677888999  99999998876632             111  


Q ss_pred             cccccceeeeeccccccceEEEec
Q 026585          212 SKKQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       212 ~kk~~~~~l~ipf~~I~karL~~e  235 (236)
                             .++|||++|++|||..+
T Consensus       137 -------~~~i~~~~I~ka~l~~~  153 (155)
T PRK14634        137 -------IKRIPRDSVISVRLTNP  153 (155)
T ss_pred             -------EEEEEHHHeeeEEeCCC
Confidence                   36899999999999875

>PRK14647 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=255.48  Aligned_cols=149  Identities=21%  Similarity=0.313  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEE
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV  135 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEV  135 (236)
                      .+++.++++|+++++|++|+.+.|...+ .++|||+||+    ++||||+||+.+||+|+++||+.+   +|+++|+|||
T Consensus         7 ~~~i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~----~~gvslddC~~vSr~is~~LD~~d---~i~~~Y~LEV   79 (159)
T PRK14647          7 VDRVTELAEQVLSSLGLELVELEYKREGREMVLRLFIDK----EGGVNLDDCAEVSRELSEILDVED---FIPERYTLEV   79 (159)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeC----CCCCCHHHHHHHHHHHHHHHcccc---cCCCCeEEEE
Confidence            4679999999999999999999998766 6899999998    789999999999999999999988   9999999999


Q ss_pred             ecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCccc
Q 026585          136 SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSK  213 (236)
Q Consensus       136 SSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~k  213 (236)
                      ||||++|||++++||+||+|++|+|+++.+....  .-++++.|  +|.+++++.+++.+.            +|+    
T Consensus        80 SSPG~~RpL~~~~~f~r~~G~~v~V~l~~~~~~~--~~~~~~~~~G~L~~~~~~~v~l~~~------------~~~----  141 (159)
T PRK14647         80 SSPGLDRPLKKEADYERYAGRLVKVRTFELLADE--AGNKRKTFLGELEGLADGVVTIALK------------EGQ----  141 (159)
T ss_pred             cCCCCCCcCCCHHHHHHhCCcEEEEEEecccccc--ccCCceEEEEEEEeecCCEEEEEEc------------CCc----
Confidence            9999999999999999999999999999322100  00267888  999999887765321            111    


Q ss_pred             cccceeeeeccccccceEEEec
Q 026585          214 KQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       214 k~~~~~l~ipf~~I~karL~~e  235 (236)
                           .++|||++|++|+|.++
T Consensus       142 -----~~~i~~~~I~ka~l~~e  158 (159)
T PRK14647        142 -----QARIPLDKIAKANLEFE  158 (159)
T ss_pred             -----EEEEEHHHCCEEEEeee
Confidence                 36899999999999875

>PRK14643 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-36  Score=256.44  Aligned_cols=152  Identities=14%  Similarity=0.226  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEe
Q 026585           58 KEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS  136 (236)
Q Consensus        58 ~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVS  136 (236)
                      +++.++++|+++++|++|+.++|...+ +++|||+||+...+.||||||||+.+||+|+++||+.+   +|++.|+||||
T Consensus         9 ~~l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d---~i~~~Y~LEVS   85 (164)
T PRK14643          9 FQINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQFI---KTSEKYLLEIS   85 (164)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCccC---CCCCCeEEEec
Confidence            578999999999999999999998776 78999999852112478999999999999999999999   99999999999


Q ss_pred             cCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccc
Q 026585          137 SPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKK  214 (236)
Q Consensus       137 SPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk  214 (236)
                      |||++|||++++||.||+|++|+|+++       .+++|++.|  .|.+++++.++++..+. ++      ..|+     
T Consensus        86 SPGleRpL~~~~df~r~~G~~V~V~l~-------~~~~g~k~~~G~L~~~~~~~~~l~l~~~-~~------~~~~-----  146 (164)
T PRK14643         86 SSGIEKQIRSQEELVKALNQWVYVQLN-------NEIKKVKEFEGYVTKYNVNTNTFRFTFF-IK------GQKK-----  146 (164)
T ss_pred             CCCCCCCCCCHHHHHHhcCCeEEEEEe-------cccCCceEEEEEEEEEeCCcEEEEEEee-cc------CcCc-----
Confidence            999999999999999999999999999       778899999  99999988776643321 00      1121     


Q ss_pred             ccceeeeeccccccceEEEec
Q 026585          215 QREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       215 ~~~~~l~ipf~~I~karL~~e  235 (236)
                          .++|||++|++|||+++
T Consensus       147 ----~~~ip~~~I~karl~~~  163 (164)
T PRK14643        147 ----KLDVKYEQIKFIRYAVR  163 (164)
T ss_pred             ----EEEEeHHHhhheEeccc
Confidence                36899999999999875

>PRK14632 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=257.16  Aligned_cols=153  Identities=16%  Similarity=0.192  Sum_probs=130.2

Q ss_pred             cHHHHHHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEE
Q 026585           55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLE  134 (236)
Q Consensus        55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LE  134 (236)
                      .-.+++..+++|+++++|++|+.+++...++++|||+||+    ++||||+||+.+||+|+++||+.+   +|+++|+||
T Consensus         5 ~~~~~i~~li~pv~~~~G~eLvdve~~~~~~~~lrV~ID~----~~GV~ldDC~~vSr~is~~LD~~d---~i~~~Y~LE   77 (172)
T PRK14632          5 ALDATIADMAGPFLASLGLELWGIELSYGGRTVVRLFVDG----PEGVTIDQCAEVSRHVGLALEVED---VISSAYVLE   77 (172)
T ss_pred             hHHHHHHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhcccc---cCCCCeEEE
Confidence            3457899999999999999999999986568999999998    789999999999999999999988   999999999


Q ss_pred             EecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCC---CCCceE--EEEEEeCCceEEEEeecceehhhcccCCCC
Q 026585          135 VSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPS---ESDGVF--RLISFDMETECCTWGLADVRINREKAGKGR  209 (236)
Q Consensus       135 VSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~---eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr  209 (236)
                      |||||++|||++++||+||+|+.|+|+++       .++   +|++.|  +|.+++++++++...      +    .+++
T Consensus        78 VSSPGldRpL~~~~~f~r~iG~~V~V~l~-------~~~~~~~g~k~~~G~L~~v~~~~i~l~~~------~----~~~~  140 (172)
T PRK14632         78 VSSPGLERPFFRAEQMSPYVGRQIELTLI-------DPTPEWPGRRKFRGELLAVEGDTVVLRPE------G----APAP  140 (172)
T ss_pred             EeCCCCCCcCCCHHHHHHhCCCEEEEEEe-------ccccccCCceEEEEEEEEEeCCEEEEEEc------C----cccc
Confidence            99999999999999999999999999999       444   478888  999999987765431      0    1111


Q ss_pred             CccccccceeeeeccccccceEEEec
Q 026585          210 PLSKKQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       210 ~~~kk~~~~~l~ipf~~I~karL~~e  235 (236)
                      +    .....++|||++|++|||.++
T Consensus       141 ~----~~~~~~~i~~~~I~ka~l~~~  162 (172)
T PRK14632        141 E----AEEAVLRTSWQGVRKANLIHV  162 (172)
T ss_pred             c----CCceeEEEEhHHccEEEEEEE
Confidence            1    011247899999999999874

>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=100.00  E-value=1.3e-36  Score=254.05  Aligned_cols=145  Identities=25%  Similarity=0.349  Sum_probs=131.7

Q ss_pred             cHHHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEE
Q 026585           55 WWDKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSL  133 (236)
Q Consensus        55 ~w~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~L  133 (236)
                      .-.+++..+++|+++++|++|+.++|...+ .++|||+||+    .|++|+|||+++||+|+++||..+   ||++.|+|
T Consensus         5 ~~~~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~----~g~v~lddC~~vSr~is~~LD~ed---pi~~~Y~L   77 (153)
T COG0779           5 PITEKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDK----EGGVTLDDCADVSRAISALLDVED---PIEGAYFL   77 (153)
T ss_pred             chHHHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCC----CCCCCHHHHHHHHHHHHHHhccCC---cccccEEE
Confidence            345789999999999999999999998877 7999999999    699999999999999999999988   99999999


Q ss_pred             EEecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCc
Q 026585          134 EVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPL  211 (236)
Q Consensus       134 EVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~  211 (236)
                      ||||||++|||++++||.||+|+.|+|+++       .++++++.|  .|.+++++++++..             .|+  
T Consensus        78 EVSSPGldRpL~~~~~f~r~~G~~Vkv~l~-------~~~~~~k~~~G~i~~~d~~~v~~~~-------------~~k--  135 (153)
T COG0779          78 EVSSPGLDRPLKTAEHFARFIGEKVKVKLR-------LPIEGRKKFEGKIVAVDGETVTLEV-------------DGK--  135 (153)
T ss_pred             EeeCCCCCCCcCCHHHHHHhcCcEEEEEEe-------cccCCceEEEEEEEEEcCCeEEEEE-------------CCE--
Confidence            999999999999999999999999999999       788999999  99999999866532             122  


Q ss_pred             cccccceeeeeccccccceEEEec
Q 026585          212 SKKQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       212 ~kk~~~~~l~ipf~~I~karL~~e  235 (236)
                             .+.|||++|+||||++.
T Consensus       136 -------~v~Ip~~~i~kArl~~~  152 (153)
T COG0779         136 -------EVEIPFSDIAKARLVPE  152 (153)
T ss_pred             -------EEEEEcccchhheeccc
Confidence                   37999999999999863

>PRK14646 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=255.02  Aligned_cols=143  Identities=19%  Similarity=0.213  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEE
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV  135 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEV  135 (236)
                      .+++.++++|+++++|++|+.++|...+ .++|||+||+..  .++||+|||+.+||+|+++||+.+   +|+++|+|||
T Consensus         6 ~~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~--g~gVtldDC~~vSr~is~~LD~~D---~i~~~Y~LEV   80 (155)
T PRK14646          6 KSKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTN--GDDISLDDCALFNTPASEEIENSN---LLNCSYVLEI   80 (155)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCC--CCCccHHHHHHHHHHHHHHhCcCC---CCCCCeEEEE
Confidence            3679999999999999999999998765 789999999831  146999999999999999999999   9999999999


Q ss_pred             ecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCccc
Q 026585          136 SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSK  213 (236)
Q Consensus       136 SSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~k  213 (236)
                      ||||++|||++++||+||+|++|+|+++       .+.++++.|  +|.+++++.+++..             +|+    
T Consensus        81 SSPGldRpL~~~~df~r~~G~~v~V~l~-------~~~~~~~~~~G~L~~~~~~~v~l~~-------------~g~----  136 (155)
T PRK14646         81 SSQGVSDELTSERDFKTFKGFPVNVELN-------QKNSKIKFLNGLLYEKSKDYLAINI-------------KGK----  136 (155)
T ss_pred             cCCCCCCcCCCHHHHHHhCCCEEEEEEe-------cCcCCeEEEEEEEEEEeCCEEEEEE-------------CCE----
Confidence            9999999999999999999999999999       677888998  99999998776521             222    


Q ss_pred             cccceeeeeccccccceEEE
Q 026585          214 KQREWRLNTTFDSLRLVRLH  233 (236)
Q Consensus       214 k~~~~~l~ipf~~I~karL~  233 (236)
                           .+.|||++|++|||+
T Consensus       137 -----~~~i~~~~I~ka~L~  151 (155)
T PRK14646        137 -----IKKIPFNEVLKISLC  151 (155)
T ss_pred             -----EEEEEHHHeeeEEeC
Confidence                 368999999999996

>PRK14636 hypothetical protein; Provisional

Probab=100.00  E-value=5e-36  Score=255.69  Aligned_cols=145  Identities=21%  Similarity=0.266  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEe
Q 026585           58 KEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS  136 (236)
Q Consensus        58 ~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVS  136 (236)
                      +++.++++|+++++|++|+.++|...+ +++|||+||+..  .++|||+||+.+||+|++.||+.+   +|+++|+||||
T Consensus         5 ~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~--~ggV~lDDC~~vSr~Is~~LD~~d---~i~~~Y~LEVS   79 (176)
T PRK14636          5 AALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPD--TRQLVIEDCAALSRRLSDVFDELD---PIEDAYRLEVS   79 (176)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCC--CCCcCHHHHHHHHHHHHHHhccCc---CCCCCeEEEEe
Confidence            568999999999999999999998765 789999999841  246999999999999999999988   99999999999


Q ss_pred             cCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccc
Q 026585          137 SPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKK  214 (236)
Q Consensus       137 SPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk  214 (236)
                      |||++|||++++||+||+|++|+|+++       .+++|++.|  +|.+++++.+++.+.            +++     
T Consensus        80 SPGldRpL~~~~df~r~~G~~V~V~l~-------~~~~g~k~~~G~L~~v~~~~v~l~~~------------~~~-----  135 (176)
T PRK14636         80 SPGIDRPLTRPKDFADWAGHEARIALS-------EPLDGRKQFRGELKGIDGDTVTIADN------------KAG-----  135 (176)
T ss_pred             CCCCCCCCCCHHHHHHhCCCeEEEEEe-------cccCCeEEEEEEEEEEeCCEEEEEEc------------CCc-----
Confidence            999999999999999999999999999       777888999  999999987765431            111     


Q ss_pred             ccceeeeeccccccceEEEec
Q 026585          215 QREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       215 ~~~~~l~ipf~~I~karL~~e  235 (236)
                          .++|||++|++|||.++
T Consensus       136 ----~~~i~~~~I~kA~l~~~  152 (176)
T PRK14636        136 ----EVILPFAAIESAKLILT  152 (176)
T ss_pred             ----EEEEEhHHcceEEEecc
Confidence                35899999999999874

>PRK14631 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=251.80  Aligned_cols=148  Identities=20%  Similarity=0.246  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCC--------------CCCCCChhHHHHHHHHHHHhhhhh
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSN--------------KSGSPSMEDIEAFCTTYRARLDEA  121 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~--------------~~ggvsldDCe~vSr~i~~~LD~~  121 (236)
                      -+++.++++|+++++|++|+.++|...+ +++|||+||+...              ..++|||+||+.+||+|+++||..
T Consensus         7 ~~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~~   86 (174)
T PRK14631          7 SQALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDVH   86 (174)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhccc
Confidence            4678899999999999999999998765 7899999997311              136899999999999999999998


Q ss_pred             hccCCCCCCeEEEEecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEe--CCceEEEEeecc
Q 026585          122 EIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFD--METECCTWGLAD  197 (236)
Q Consensus       122 d~~~~i~~~Y~LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd--~e~~~~~~~la~  197 (236)
                      +   +|++.|+|||||||++|||++++||+||+|+.|+|+++       .+.++++.|  +|.+++  ++.+++.+.   
T Consensus        87 d---~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~-------~~~~~~k~~~G~L~~v~~~~~~v~l~~~---  153 (174)
T PRK14631         87 D---PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQVALRLI-------AAVENRRKFQAKLLAVDLENEEIQVEVE---  153 (174)
T ss_pred             c---cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeEEEEEe-------cccCCceEEEEEEEEeecCCCEEEEEEc---
Confidence            8   99999999999999999999999999999999999999       677889999  999999  766554221   


Q ss_pred             eehhhcccCCCCCccccccceeeeeccccccceEEEec
Q 026585          198 VRINREKAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       198 vk~nr~~~~KGr~~~kk~~~~~l~ipf~~I~karL~~e  235 (236)
                                ++    +    .+.|||++|+||||...
T Consensus       154 ----------~~----~----~~~i~~~~I~ka~L~~~  173 (174)
T PRK14631        154 ----------GK----H----VLDIDSNNIDKANLIYQ  173 (174)
T ss_pred             ----------CC----c----EEEEEhHHcceEEEeec
Confidence                      11    0    36899999999999863

>PRK14638 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-35  Score=245.69  Aligned_cols=139  Identities=22%  Similarity=0.288  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEe
Q 026585           58 KEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS  136 (236)
Q Consensus        58 ~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVS  136 (236)
                      +++.++++|+++++|++|+.++|...+ +++|||+||+.   .|+|||+||+.+||+|+++||+.+   +|+++|+||||
T Consensus         8 ~~i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~---~G~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LEVS   81 (150)
T PRK14638          8 EKVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNP---VGYVSVRDCELFSREIERFLDRED---LIEHSYTLEVS   81 (150)
T ss_pred             HHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECC---CCCcCHHHHHHHHHHHHHHhcccc---ccCCceEEEEe
Confidence            578899999999999999999998865 79999999982   345999999999999999999988   99999999999


Q ss_pred             cCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccc
Q 026585          137 SPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKK  214 (236)
Q Consensus       137 SPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk  214 (236)
                      |||++|||++++||.||+|++|+|++.           +.+.|  +|.+++++++++..             +|+     
T Consensus        82 SPGldRpL~~~~~f~r~~G~~v~V~~~-----------~~k~~~G~L~~~~~~~i~l~~-------------~~~-----  132 (150)
T PRK14638         82 SPGLDRPLRGPKDYVRFTGKLAKIVTK-----------DGKTFIGRIESFVDGTITISD-------------EKE-----  132 (150)
T ss_pred             CCCCCCCCCCHHHHHHhCCCEEEEEEC-----------CCcEEEEEEEEEeCCEEEEEE-------------CCc-----
Confidence            999999999999999999999999997           25667  99999988766520             111     


Q ss_pred             ccceeeeeccccccceEEEec
Q 026585          215 QREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       215 ~~~~~l~ipf~~I~karL~~e  235 (236)
                          .+.|||++|++|||.++
T Consensus       133 ----~~~i~~~~I~~a~l~~e  149 (150)
T PRK14638        133 ----KYEINIDDVKRANLEVE  149 (150)
T ss_pred             ----EEEEEhHHcceEEEeee
Confidence                36899999999999875

>PRK00092 ribosome maturation protein RimP; Reviewed

Probab=100.00  E-value=4.4e-35  Score=244.30  Aligned_cols=145  Identities=27%  Similarity=0.412  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEE
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV  135 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEV  135 (236)
                      .+++.++++|+++++|++|+.+.+...+ +++|+|+||+    ++|+|+++|+.+||+|+++||+.+   +++++|+|||
T Consensus         6 ~~~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~----~~gv~iddc~~~Sr~is~~LD~~d---~i~~~Y~LEV   78 (154)
T PRK00092          6 EEQLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDK----EGGIDLDDCEEVSRQISAVLDVED---PIPGAYTLEV   78 (154)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhcccc---CCCCCeEEEE
Confidence            3568999999999999999999988765 7999999998    788999999999999999999888   9999999999


Q ss_pred             ecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCccc
Q 026585          136 SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSK  213 (236)
Q Consensus       136 SSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~k  213 (236)
                      ||||++|||++++||+||+|+.|+|+++       .+.++.+.|  +|.+++++++++.+.             |++   
T Consensus        79 SSPGi~RpL~~~~~f~r~~G~~v~V~~~-------~~~~~~~~~~G~L~~~~~~~i~l~~~-------------~~~---  135 (154)
T PRK00092         79 SSPGLDRPLKKARDFRRFIGREVKVKLY-------EPIDGRKKFQGILLAVDGETVTLEVE-------------GKE---  135 (154)
T ss_pred             eCCCCCCcCCCHHHHHHhCCCeEEEEEE-------cccCCceEEEEEEEEeeCCEEEEEEC-------------CCe---
Confidence            9999999999999999999999999999       666778888  999999987765321             211   


Q ss_pred             cccceeeeeccccccceEEEec
Q 026585          214 KQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       214 k~~~~~l~ipf~~I~karL~~e  235 (236)
                      +    .++|||++|++|||.++
T Consensus       136 ~----~~~i~~~~I~~a~l~~e  153 (154)
T PRK00092        136 K----EVEIPLDNIAKARLVVE  153 (154)
T ss_pred             E----EEEEEHHHcceEEEeee
Confidence            1    36899999999999875

>PRK14639 hypothetical protein; Provisional

Probab=100.00  E-value=6.4e-35  Score=240.65  Aligned_cols=135  Identities=17%  Similarity=0.209  Sum_probs=118.2

Q ss_pred             HHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEecCCCC
Q 026585           63 IAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE  141 (236)
Q Consensus        63 lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGle  141 (236)
                      .++|+++++|++|+.+++...+ +++|||+||+    ++||||+||+.+||+|+++||+.+   +|+++|+|||||||++
T Consensus         2 ~~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~----~~gv~iddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGl~   74 (140)
T PRK14639          2 NLEALCKECGVSFYDDELVSENGRKIYRVYITK----EGGVNLDDCERLSELLSPIFDVEP---PVSGEYFLEVSSPGLE   74 (140)
T ss_pred             chhHhHHhCCCEEEEEEEEecCCCcEEEEEEeC----CCCCCHHHHHHHHHHHHHHhcccc---ccCCCeEEEEeCCCCC
Confidence            3689999999999999998765 7899999998    788999999999999999999998   9999999999999999


Q ss_pred             CCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccccccee
Q 026585          142 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR  219 (236)
Q Consensus       142 RpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~~~~~  219 (236)
                      |||++++||+||+|++|+|++.           +.+.|  +|.++++++++++..           .+++         .
T Consensus        75 RpL~~~~~f~r~~G~~v~v~l~-----------~~~~~~G~L~~~~~~~i~l~~~-----------~~~~---------~  123 (140)
T PRK14639         75 RKLSKIEHFAKSIGELVKITTN-----------EKEKFEGKIVSVDDENITLENL-----------ENKE---------K  123 (140)
T ss_pred             CcCCCHHHHHHhCCCEEEEEEC-----------CCcEEEEEEEEEeCCEEEEEEc-----------cCCc---------E
Confidence            9999999999999999999986           24666  999999987765321           0111         3


Q ss_pred             eeeccccccceEEEec
Q 026585          220 LNTTFDSLRLVRLHSD  235 (236)
Q Consensus       220 l~ipf~~I~karL~~e  235 (236)
                      ++|||++|++|||+++
T Consensus       124 ~~i~~~~I~ka~l~~~  139 (140)
T PRK14639        124 TTINFNDIKKAKTYVE  139 (140)
T ss_pred             EEEEhHHeeeEEEEEe
Confidence            6899999999999975

>PRK14635 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-34  Score=241.32  Aligned_cols=156  Identities=22%  Similarity=0.303  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEE
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV  135 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEV  135 (236)
                      .+++.++++|+++ .|++|+.++|...+ +++|||+||+.+++++||||+||+++||+|+++||+.+   ++ .+|+|||
T Consensus         5 ~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~~d---~~-~~Y~LEV   79 (162)
T PRK14635          5 EEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS---PD-LDFTLKV   79 (162)
T ss_pred             HHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCCCC---CC-CCeEEEE
Confidence            4679999999996 69999999997766 68999999986555689999999999999999999877   65 8999999


Q ss_pred             ecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceEEEEEEeCCceEEEEeecceehhhcccCCCCCccccc
Q 026585          136 SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQ  215 (236)
Q Consensus       136 SSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~  215 (236)
                      ||||++|||++++||.||+|++|+|++..+++   ....| .+++|.+++++++++.+..           |+++.  + 
T Consensus        80 SSPGldRpL~~~~~~~r~~G~~v~v~~~~~~~---~~~~g-~~g~L~~~~~~~v~l~~~~-----------k~~~~--~-  141 (162)
T PRK14635         80 SSAGAERKLRLPEDLDRFRGIPVRLVFRSEES---EKWQE-GIFRLVNRDGDQVELEKFQ-----------KGKKS--K-  141 (162)
T ss_pred             cCCCCCCcCCCHHHHHHhCCCEEEEEEecCCC---cEEEe-cceEEEEEcCCEEEEEEec-----------ccccc--c-
Confidence            99999999999999999999999999863211   00000 1126999999887764321           12211  1 


Q ss_pred             cceeeeeccccccceEEEec
Q 026585          216 REWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       216 ~~~~l~ipf~~I~karL~~e  235 (236)
                      ....++|||++|++|||+++
T Consensus       142 ~~~~~~ip~~~I~ka~l~~e  161 (162)
T PRK14635        142 VKKQTTLNLKDILKGNLYVE  161 (162)
T ss_pred             CCeEEEEEhHHeeeeEEEEe
Confidence            11247899999999999976

>PRK14641 hypothetical protein; Provisional

Probab=100.00  E-value=4.9e-34  Score=242.86  Aligned_cols=152  Identities=19%  Similarity=0.235  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHH--hhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCC----CC
Q 026585           58 KEALAIAEDVC--LSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIP----EN  130 (236)
Q Consensus        58 ~~v~~lae~vl--~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~----~~  130 (236)
                      +.++++++|++  .++|++|+.+.+..++ +++|||+||+    ++|||||||+++||+|++.||+.+   +++    ++
T Consensus         7 ~~~~~~~~~~~~~~~~G~eLvdve~~~~~~~~~lrV~ID~----~~gv~lDdC~~vSr~Is~~LD~~d---~i~~~~~~~   79 (173)
T PRK14641          7 NCVLQVLEASAGTKGEGVYLVSMTVKGSGKGRKIEVLLDA----DTGIRIDQCAFFSRRIRERLEEDE---ELLGLVGED   79 (173)
T ss_pred             HHHHHHHHhhhccccCCeEEEEEEEEeCCCCcEEEEEEeC----CCCCCHHHHHHHHHHHHHHhCccc---ccccCCCCC
Confidence            45778888877  6888888888887765 7899999998    789999999999999999999887   554    79


Q ss_pred             eEEEEecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEe-----CCceEEEEeecceehhhc
Q 026585          131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFD-----METECCTWGLADVRINRE  203 (236)
Q Consensus       131 Y~LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd-----~e~~~~~~~la~vk~nr~  203 (236)
                      |+|||||||++|||++++||+||+|+.|+|+++       .+.++++.|  +|.+++     +..+++  ...      .
T Consensus        80 Y~LEVSSPGldRpL~~~~~f~r~~G~~V~V~l~-------~~~~~~~~~~G~L~~~~~~~~~~~~v~~--~~~------~  144 (173)
T PRK14641         80 FDLMVSSPGLGEPIILPRQYGRHVGRLLRVTYR-------DEEGSEHEVTGHLQEVSLTEGEGASIVL--KPE------Q  144 (173)
T ss_pred             eEEEEeCCCCCCcCCCHHHHHHhCCCEEEEEEe-------cccCCeEEEEEEEEeeecccCCCCcEEE--Eec------c
Confidence            999999999999999999999999999999999       667788888  999996     333333  211      1


Q ss_pred             ccCCCCCccccccceeeeeccccccceEEEec
Q 026585          204 KAGKGRPLSKKQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       204 ~~~KGr~~~kk~~~~~l~ipf~~I~karL~~e  235 (236)
                      +.+|++    +.....+++||++|++|+++++
T Consensus       145 ~~~~~~----~~~~~~~~v~~~~v~~A~vevE  172 (173)
T PRK14641        145 KKKKGK----QEETENITLELDAVIRAVPEAE  172 (173)
T ss_pred             cccccc----CCCCceEEEEhHHccceeeeee
Confidence            112222    2223467999999999999886

>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes []

Probab=100.00  E-value=1.7e-34  Score=236.95  Aligned_cols=138  Identities=30%  Similarity=0.463  Sum_probs=100.3

Q ss_pred             HHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEecCCCC
Q 026585           63 IAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE  141 (236)
Q Consensus        63 lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGle  141 (236)
                      ||+|+++++|++|+.+.+...+ +++|+|+||+    +++||+++|+++||+|++.||..+   +++++|+|||||||++
T Consensus         1 li~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~----~~gv~lddc~~~sr~i~~~LD~~d---~i~~~y~LEVSSPG~~   73 (141)
T PF02576_consen    1 LIEPLLEELGLELVDVEVVKEGGNRILRVFIDK----DGGVSLDDCEKVSRAISALLDAED---PIPEDYTLEVSSPGID   73 (141)
T ss_dssp             -HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE-----SS---HHHHHHHHHHHGGGTTTS-------S-EEEEEE--SSS
T ss_pred             CcccchhhcCCEEEEEEEEECCCCEEEEEEEEe----CCCCCHHHHHHHHHHHHHHHcccc---ccCcceEEEEeCCCCC
Confidence            6899999999999999998877 6799999998    678999999999999999999988   9999999999999999


Q ss_pred             CCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccccccee
Q 026585          142 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR  219 (236)
Q Consensus       142 RpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~~~~~  219 (236)
                      |||++++||.||+|++|+|+++       .+.++++.|  .|.+++++++++.+.           .|+++       ..
T Consensus        74 r~L~~~~~~~~~iG~~v~v~~~-------~~~~~~~~~~G~L~~~~~~~i~l~~~-----------~~~~~-------~~  128 (141)
T PF02576_consen   74 RPLKSPRDFERFIGRKVKVKLK-------QPVNGRKEFEGKLLEVDEDEITLEVE-----------GKGKK-------KE  128 (141)
T ss_dssp             S--SSHHHHHHH-SEEEEEE-S-------S-SSS-SEEEEEEEEEETTEEEEEEE------------SS-E-------EE
T ss_pred             CcCCCHHHHHHhcCCeEEEEEe-------ccCCCcEEEEEEEEEEeCCEEEEEEC-----------Cccce-------EE
Confidence            9999999999999999999998       667788888  999999988777543           23322       14


Q ss_pred             eeeccccccceEE
Q 026585          220 LNTTFDSLRLVRL  232 (236)
Q Consensus       220 l~ipf~~I~karL  232 (236)
                      ++|||++|++|||
T Consensus       129 ~~I~~~~I~ka~L  141 (141)
T PF02576_consen  129 VEIPFSDIKKARL  141 (141)
T ss_dssp             EEE-SS--SS-EE
T ss_pred             EEEEHHHCceEeC
Confidence            7999999999997

; PDB: 1IB8_A.

>PRK14630 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-33  Score=232.36  Aligned_cols=136  Identities=14%  Similarity=0.189  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEE
Q 026585           57 DKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEV  135 (236)
Q Consensus        57 ~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEV  135 (236)
                      ..++.++++|+++++|++|+.+++...+ +++|||+||+    ++|||++||+.+||+|+..||  +   +|+++|+|||
T Consensus         7 ~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~----~~gV~idDC~~vSr~i~~~ld--~---~i~~~Y~LEV   77 (143)
T PRK14630          7 NSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYK----KDSFGVDTLCDLHKMILLILE--A---VLKYNFSLEI   77 (143)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhc--c---cCCCCeEEEE
Confidence            3578999999999999999999998765 7999999998    789999999999999999996  4   8899999999


Q ss_pred             ecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceEEEEEEeCCceEEEEeecceehhhcccCCCCCccccc
Q 026585          136 SSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVFRLISFDMETECCTWGLADVRINREKAGKGRPLSKKQ  215 (236)
Q Consensus       136 SSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~  215 (236)
                      ||||++|||++++||+||+|++|+|++.       .+..   .-.|.+++++++++..             .|+      
T Consensus        78 SSPGldRpL~~~~df~r~~G~~v~V~l~-------~~~~---~G~L~~~~d~~i~l~~-------------~~~------  128 (143)
T PRK14630         78 STPGINRKIKSDREFKIFEGKKIKLMLD-------NDFE---EGFILEAKADSFIFKT-------------DSK------  128 (143)
T ss_pred             eCCCCCCcCCCHHHHHHhCCCEEEEEEc-------Ccce---EEEEEEEeCCEEEEEE-------------CCE------
Confidence            9999999999999999999999999997       3322   2279999998776521             111      


Q ss_pred             cceeeeeccccccceEEE
Q 026585          216 REWRLNTTFDSLRLVRLH  233 (236)
Q Consensus       216 ~~~~l~ipf~~I~karL~  233 (236)
                         .+.|||++|++|||.
T Consensus       129 ---~~~i~~~~I~ka~lv  143 (143)
T PRK14630        129 ---EVNVLYSDVKKAKLS  143 (143)
T ss_pred             ---EEEEEhHhcceEEEC
Confidence               368999999999984

>PRK02001 hypothetical protein; Validated

Probab=100.00  E-value=5.7e-33  Score=232.03  Aligned_cols=146  Identities=21%  Similarity=0.249  Sum_probs=117.0

Q ss_pred             HHHHHH-HHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEe
Q 026585           58 KEALAI-AEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVS  136 (236)
Q Consensus        58 ~~v~~l-ae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVS  136 (236)
                      ++|.+| ++|+++++|++|+.+.+.  +++.|||+||+    ++|||++||+.+||+|+++||+.+      ++|+||||
T Consensus         4 ~~~~~~~~e~~~~~~g~eLvdv~~~--~~~~lrV~ID~----~~Gv~lddC~~vSr~is~~LD~~d------~~Y~LEVS   71 (152)
T PRK02001          4 KKVVELLVEELLEGPELFLVDLTIS--PDNKIVVEIDG----DEGVWIEDCVELSRAIEHNLDREE------EDFELEVG   71 (152)
T ss_pred             HHHHHHHHHhhhhhcCcEEEEEEEE--cCCEEEEEEEC----CCCCCHHHHHHHHHHHHHHhcCCC------CCeEEEEe
Confidence            455566 999999999888877776  45679999998    789999999999999999999654      79999999


Q ss_pred             cCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccc
Q 026585          137 SPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKK  214 (236)
Q Consensus       137 SPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk  214 (236)
                      |||++|||++++||+||+|++|+|++.           +.+.|  +|.+++++++++...-.    ...+.+||+..   
T Consensus        72 SPGldRpL~~~~~f~r~~G~~v~V~l~-----------~~~~~~G~L~~~~~~~i~l~~~~~----~~~~~~k~~~~---  133 (152)
T PRK02001         72 SAGLTSPLKVPRQYKKNIGRELEVLTK-----------NGKKIEGELKSADENDITLEVKAR----EPKEGGKGKVT---  133 (152)
T ss_pred             CCCCCCcCCCHHHHHHhCCCEEEEEEC-----------CCCEEEEEEEEEeCCEEEEEEccc----ccccccccccc---
Confidence            999999999999999999999999996           25667  99999998877643210    00112233321   


Q ss_pred             ccceeeeeccccccceEEEe
Q 026585          215 QREWRLNTTFDSLRLVRLHS  234 (236)
Q Consensus       215 ~~~~~l~ipf~~I~karL~~  234 (236)
                       +...++|||++|++|+|.+
T Consensus       134 -~~~~~~i~~~~I~ka~l~~  152 (152)
T PRK02001        134 -VEKEETITYDDIKEAKVII  152 (152)
T ss_pred             -cceeEEEEhHheeeEEEeC
Confidence             2235799999999999975

>PRK14642 hypothetical protein; Provisional

Probab=100.00  E-value=1e-32  Score=238.73  Aligned_cols=165  Identities=22%  Similarity=0.219  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhhcCCcEEEEEEEEcCCceEEEEEeccCC---------CCCCCChhHHHHHHHHHHHhhhhhhccCCCCCC
Q 026585           60 ALAIAEDVCLSFDGDLKIYAFRTLPNSTIKVRIEKMSN---------KSGSPSMEDIEAFCTTYRARLDEAEIAKSIPEN  130 (236)
Q Consensus        60 v~~lae~vl~~~g~el~lv~~~~~~~~~lrV~IDk~~~---------~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~  130 (236)
                      +.++++++++++|++|+.+++.  ++++|||+||+.+.         +.++|||+||+.+||+|+.+||..+   .  ..
T Consensus         3 l~~liepvv~~lG~eLvdve~~--~~~~LrV~ID~~~~~~~~~~~~~~~~gVtidDC~~vSR~Is~~LDve~---~--~y   75 (197)
T PRK14642          3 LQQIVEQTVTGLGYDLVEIERS--AGGLLRVTIDLPWVPPTEGAPVGPEQFVTVEDCEKVTRQLQFALEVDG---V--DY   75 (197)
T ss_pred             HHHHHHHHHHHcCCEEEEEEEe--cCCEEEEEEecCccccccccccccCCCccHHHHHHHHHHHHHHhcccC---c--cc
Confidence            5689999999999777777654  45699999998421         1367999999999999999999765   2  33


Q ss_pred             eEEEEecCCCCCCCCChHHHhhcCCCeEEEEEeecccc--CCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccC
Q 026585          131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVT--TGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAG  206 (236)
Q Consensus       131 Y~LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~--~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~  206 (236)
                      |+||||||||+|||++++||.||+|+.|+|+++.+.+.  .+....++++|  +|.++++++++++|.-++.+..-+..+
T Consensus        76 ~~LEVSSPGldRPLk~~~df~rfiG~~V~V~l~~pi~~~~~~~~~~~rk~f~G~L~~~~~~~i~l~~~~~~~~k~g~~~~  155 (197)
T PRK14642         76 KRLEVSSPGIDRPLRHEQDFERFAGEVIDITLKAPIGAAAGGQVSANRKKFRGTLERAESGGWQIVWSDEPPVKPGQRVS  155 (197)
T ss_pred             cEEEEeCCCCCCCCCCHHHHHHhCCCeEEEEEeccccccccccccCCceEEEEEEEEEcCCEEEEEEeecccCCCccccc
Confidence            47999999999999999999999999999999943321  01122268888  999999999999997532111101113


Q ss_pred             CCCCccccccceeeeeccccccceEEEe
Q 026585          207 KGRPLSKKQREWRLNTTFDSLRLVRLHS  234 (236)
Q Consensus       207 KGr~~~kk~~~~~l~ipf~~I~karL~~  234 (236)
                      |||.+..   ...+.|+|++|++|||.+
T Consensus       156 k~~~~~~---~~~~~~~~~eik~a~l~p  180 (197)
T PRK14642        156 KKRVPAP---LQALGFTLDELREARLAP  180 (197)
T ss_pred             ccccccc---ceeEEeehhheeeEEEEE
Confidence            4443211   235899999999999986

>PRK14637 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-32  Score=228.10  Aligned_cols=135  Identities=21%  Similarity=0.281  Sum_probs=114.5

Q ss_pred             HHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEecC
Q 026585           60 ALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSP  138 (236)
Q Consensus        60 v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSP  138 (236)
                      -.++++|+++++|++|+.+.+...+ +++|||+||+    ++||||+||+++||+|+++||...   + +.+|+||||||
T Consensus        10 ~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~----~~gV~iddC~~vSr~Is~~LD~~~---~-~~~y~LEVSSP   81 (151)
T PRK14637         10 YFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYS----AGGVGLDDCARVHRILVPRLEALG---G-VRDVFLEVSSP   81 (151)
T ss_pred             HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhcccc---c-ccCcEEEEeCC
Confidence            3489999999999999999998766 7899999998    789999999999999999999643   2 57899999999


Q ss_pred             CCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE---EEEEEeCCceEEEEeecceehhhcccCCCCCccccc
Q 026585          139 GVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF---RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQ  215 (236)
Q Consensus       139 GleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f---~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~  215 (236)
                      |++|||++++||.||+|++|+|++.           +++.|   +|.+++++++++..             +|+      
T Consensus        82 GldRpL~~~~~f~r~~G~~V~V~l~-----------~~~~~~~G~L~~~~d~~v~l~~-------------~~~------  131 (151)
T PRK14637         82 GIERVIKNAAEFSIFVGETVKVWFE-----------CTGQWQVGTIAEADETCLVLTS-------------DGV------  131 (151)
T ss_pred             CCCCCCCCHHHHHHhCCCEEEEEEC-----------CCCcEEEEEEEEEeCCEEEEEE-------------CCE------
Confidence            9999999999999999999999983           12222   89999998766521             111      


Q ss_pred             cceeeeeccccccceEEEec
Q 026585          216 REWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       216 ~~~~l~ipf~~I~karL~~e  235 (236)
                         .+.|||++|++|||++.
T Consensus       132 ---~~~i~~~~I~ka~L~~~  148 (151)
T PRK14637        132 ---PVTIPYVQITKAQLHPA  148 (151)
T ss_pred             ---EEEEEHHHeeeEEEEEE
Confidence               36899999999999875

>PRK14645 hypothetical protein; Provisional

Probab=100.00  E-value=4.3e-32  Score=227.15  Aligned_cols=136  Identities=19%  Similarity=0.231  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEE
Q 026585           56 WDKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLE  134 (236)
Q Consensus        56 w~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LE  134 (236)
                      =-+++.++++|+++++|++|+.+.+...+ +++|||+||+.+  .++|+|+||+++||+|+++||+.+   +|+++|+||
T Consensus         7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~--~~~v~lddC~~vSr~is~~LD~~d---~i~~~Y~LE   81 (154)
T PRK14645          7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKD--EQPVTVEDLERASRALEAELDRLD---PIEGEYRLE   81 (154)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCC--CCCcCHHHHHHHHHHHHHHhcccc---cCCCceEEE
Confidence            34678999999999999999999998765 789999999731  246999999999999999999998   999999999


Q ss_pred             EecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcc
Q 026585          135 VSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLS  212 (236)
Q Consensus       135 VSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~  212 (236)
                      |||||++|||++++||.||+|++|+|++            +.+.|  +|.+++++.+++.+             +|+   
T Consensus        82 VSSPGldRpL~~~~df~r~~G~~v~v~~------------~~k~~~G~L~~~~d~~i~l~~-------------~~~---  133 (154)
T PRK14645         82 VESPGPKRPLFTARHFERFAGLKAKVRG------------PGENFTGRIKAVSGDQVTFDV-------------GGE---  133 (154)
T ss_pred             EeCCCCCCCCCCHHHHHHhCCCEEEEEc------------CCeEEEEEEEEEeCCEEEEEE-------------CCe---
Confidence            9999999999999999999999999974            25666  99999998766532             121   


Q ss_pred             ccccceeeeeccccccce
Q 026585          213 KKQREWRLNTTFDSLRLV  230 (236)
Q Consensus       213 kk~~~~~l~ipf~~I~ka  230 (236)
                            .++|||++|+++
T Consensus       134 ------~~~i~~~~I~~~  145 (154)
T PRK14645        134 ------DRTLRIGTFQAN  145 (154)
T ss_pred             ------EEEEEHHHhhhh
Confidence                  368999999755

>PRK14644 hypothetical protein; Provisional

Probab=99.97  E-value=2.6e-31  Score=218.40  Aligned_cols=131  Identities=18%  Similarity=0.233  Sum_probs=114.8

Q ss_pred             HHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhhhhccCCCCCCeEEEEecCCCC
Q 026585           63 IAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVE  141 (236)
Q Consensus        63 lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~~d~~~~i~~~Y~LEVSSPGle  141 (236)
                      +.+|+++++|++|+.++|...+ +++|||+||+    .   +|+||+.+||+|+++||+.+   +++++|+|||||||++
T Consensus         3 ~~e~~~~~~g~el~dve~~~~~~~~~LrV~Idk----~---~iddC~~vSr~is~~LD~~d---~i~~~Y~LEVSSPGld   72 (136)
T PRK14644          3 WKEKLLEKFGNKINEIKIVKEDGDLFLEVILNS----R---DLKDIEELTKEISDFIDNLS---VEFDFDSLDISSPGFD   72 (136)
T ss_pred             chhhhHHhcCCEEEEEEEEeCCCCEEEEEEECC----C---CHHHHHHHHHHHHHHhcccc---CCCCCeEEEEECCCCC
Confidence            4689999999999999987765 7899999997    3   79999999999999999988   9999999999999999


Q ss_pred             CCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccccccee
Q 026585          142 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR  219 (236)
Q Consensus       142 RpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~~~~~  219 (236)
                      |||++ +||.||+|+.|+|+++       .+++|++.|  .|.+++++++++.|..           ||+.       ..
T Consensus        73 RpL~~-~~f~r~~G~~v~V~l~-------~~~~~~~~~~G~L~~v~~~~i~l~~~~-----------k~~~-------~~  126 (136)
T PRK14644         73 MDYET-DELENHIGEIIDVSLN-------KEVNKTDFITGELLENNPETITLKWNC-----------KGQF-------RK  126 (136)
T ss_pred             CCCCH-HHHHHhCCCeEEEEEc-------cCcCCeEEEEEEEEEEeCCEEEEEEec-----------CCcE-------EE
Confidence            99998 5999999999999999       777889999  9999999988776542           3432       24


Q ss_pred             eeeccccccc
Q 026585          220 LNTTFDSLRL  229 (236)
Q Consensus       220 l~ipf~~I~k  229 (236)
                      +++|+++|++
T Consensus       127 i~~~~~~i~~  136 (136)
T PRK14644        127 VEINKENIKK  136 (136)
T ss_pred             EEECHHHhcC
Confidence            7899999874

>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold

Probab=99.85  E-value=6.5e-21  Score=143.98  Aligned_cols=80  Identities=29%  Similarity=0.361  Sum_probs=67.7

Q ss_pred             eEEEEecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCC
Q 026585          131 TSLEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKG  208 (236)
Q Consensus       131 Y~LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KG  208 (236)
                      |+|||||||++|||++++||.||+|+.|+|++.       .+++|++.|  +|.+++++++++.+.           .|+
T Consensus         1 Y~LEVSSPGl~RpL~~~~~~~r~~G~~v~v~~~-------~~~~~~~~~~G~L~~~~~~~v~l~~~-----------~~~   62 (83)
T cd01734           1 YFLEVSSPGAERPLKKEADFERAVGKYVHVKLY-------QPIDGQKEFEGTLLGVDDDTVTLEVD-----------IKT   62 (83)
T ss_pred             CEEEEcCCCCCCcCCCHHHHHHhCCCEEEEEEE-------cccCCeEEEEEEEEeEeCCEEEEEEe-----------cCC
Confidence            899999999999999999999999999999999       667788888  999999988766432           122


Q ss_pred             CCccccccceeeeeccccccceEEEec
Q 026585          209 RPLSKKQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       209 r~~~kk~~~~~l~ipf~~I~karL~~e  235 (236)
                      +       ...++|||++|++|||+++
T Consensus        63 ~-------~~~~~i~~~~I~ka~l~~~   82 (83)
T cd01734          63 R-------GKTVEIPLDKIAKARLAPE   82 (83)
T ss_pred             C-------CeEEEEEhHHeeEEEEEEE
Confidence            1       1257999999999999875

The N-terminal domain is composed of two alpha-helices and a three-stranded beta-sheet, while the C-terminal domain is composed of one alpha-helix and a five-stranded beta-sheet. This CD represents the C-terminal domain which has a fold similar to the Sm fold of proteins like Sm-D3.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1ib8_A	164	Conserved protein SP14.3; nucleic acid binding pro	3e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Length = 164

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 103 SMEDIEAFCTTYRARLDEAEIAKSIPENTSLEVSSPGVERVVRIPLELERFKDRAMYVK 161
           ++ D           LD  +     PE   LE++SPG+ER ++    +     + ++V 
Sbjct: 53  TLNDTADLTEMISPVLDTIKPD-PFPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHVG 110

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 15/41 (36%)

Query: 57 DKEALAIAEDVCLSFDGDLKIYAFRTLPNS----TIKVRIE 93
          +K+AL             LK+YA     +S     IK  +E
Sbjct: 18 EKQALK-------KLQASLKLYA----DDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1ib8_A	164	Conserved protein SP14.3; nucleic acid binding pro	100.0

>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1

Probab=100.00  E-value=7.8e-38  Score=262.53  Aligned_cols=147  Identities=17%  Similarity=0.252  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhh--hhhccCCCCCCeE
Q 026585           56 WDKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLD--EAEIAKSIPENTS  132 (236)
Q Consensus        56 w~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD--~~d~~~~i~~~Y~  132 (236)
                      ..+++.++++|++++ |++|+.+++...+ +++|||+||+    ++|||||||+.+||+|+++||  +.+   ||+++|+
T Consensus        10 ~~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~----~~gi~lddC~~vSr~is~~LD~~~~d---~i~~~Y~   81 (164)
T 1ib8_A           10 IVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDK----PEGITLNDTADLTEMISPVLDTIKPD---PFPEQYF   81 (164)
T ss_dssp             HHHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEEC----SSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEE
T ss_pred             HHHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEEC----CCCCCHHHHHHHHHHHHHHhcccccc---CCCCCeE
Confidence            357899999999999 9999999987654 7899999999    789999999999999999999  888   9999999


Q ss_pred             EEEecCCCCCCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCC
Q 026585          133 LEVSSPGVERVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRP  210 (236)
Q Consensus       133 LEVSSPGleRpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~  210 (236)
                      |||||||++|||++++||.||+|+.|+|+++       .+++|++.|  +|.+++++++++.|..           |++ 
T Consensus        82 LEVSSPGldRpL~~~~df~r~~G~~V~V~l~-------~~~~g~k~~~G~L~~~~~~~v~l~~~~-----------k~~-  142 (164)
T 1ib8_A           82 LEITSPGLERPLKTKDAVAGAVGKYIHVGLY-------QAIDKQKVFEGTLLAFEEDELTMEYMD-----------KTR-  142 (164)
T ss_dssp             EEEECCSSSSCCSSHHHHHHHCSEEEEEECS-------SCSSSCSEEEEEEEEEETTEEEEEEEC-----------SSC-
T ss_pred             EEEeCCCCCCCCCCHHHHHHhCCcEEEEEEe-------cccCCceEEEEEEEEEeCCEEEEEEec-----------ccC-
Confidence            9999999999999999999999999999999       788899999  9999999988776531           111 


Q ss_pred             ccccccceeeeeccccccceEEEec
Q 026585          211 LSKKQREWRLNTTFDSLRLVRLHSD  235 (236)
Q Consensus       211 ~~kk~~~~~l~ipf~~I~karL~~e  235 (236)
                            ...++|||++|++|||+++
T Consensus       143 ------~~~~~i~~~~I~ka~l~~e  161 (164)
T 1ib8_A          143 ------KKTVQIPYSLVSKARLAVK  161 (164)
T ss_dssp             ------EEEEEECSSCCSSCEEECS
T ss_pred             ------CeEEEEEHHHCcEEEEEEE
Confidence                  1146899999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1ib8a2	90	Hypothetical protein SP14.3 (SP0552) {Streptococcu	99.86
d1ib8a1	74	Hypothetical protein SP14.3 (SP0552) {Streptococcu	99.39

>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: YhbC-like, N-terminal domain
family: YhbC-like, N-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.86  E-value=4.7e-22  Score=150.22  Aligned_cols=78  Identities=19%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEEEEcC-CceEEEEEeccCCCCCCCChhHHHHHHHHHHHhhhh--hhccCCCCCCeE
Q 026585           56 WDKEALAIAEDVCLSFDGDLKIYAFRTLP-NSTIKVRIEKMSNKSGSPSMEDIEAFCTTYRARLDE--AEIAKSIPENTS  132 (236)
Q Consensus        56 w~~~v~~lae~vl~~~g~el~lv~~~~~~-~~~lrV~IDk~~~~~ggvsldDCe~vSr~i~~~LD~--~d~~~~i~~~Y~  132 (236)
                      --+++.++++|+++ +|++|+.++|...+ +++|||+||+    ++||+++||+.+||.|+++||.  .+   +++++|+
T Consensus        10 i~e~i~~li~pvv~-~G~eL~~ve~~~~~~~~~l~I~ID~----~~gv~iddC~~vSr~is~~LD~~e~d---~i~~~Y~   81 (90)
T d1ib8a2          10 IVELVREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDK----PEGITLNDTADLTEMISPVLDTIKPD---PFPEQYF   81 (90)
T ss_dssp             HHHHHHHHHHHHHC-SSSEEEEEEEEEETTEEEEEEEEEC----SSCCCHHHHHHHHHHHGGGTTTCCSC---CCCSCEE
T ss_pred             HHHHHHHHHHHHHh-CCCEEEEEEEEeCCCCEEEEEEEEC----CCCcCHHHHHHHHHHHHHHhcccccc---CCCCCeE
Confidence            34789999999995 79999999987654 7899999999    7889999999999999999995  45   8999999


Q ss_pred             EEEecCCCC
Q 026585          133 LEVSSPGVE  141 (236)
Q Consensus       133 LEVSSPGle  141 (236)
                      |||||||++
T Consensus        82 LEVSSPGld   90 (90)
T d1ib8a2          82 LEITSPGLE   90 (90)
T ss_dssp             EEEECCSSS
T ss_pred             EEeeCCCCC
Confidence            999999996

>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}

class: All beta proteins
fold: Sm-like fold
superfamily: YhbC-like, C-terminal domain
family: YhbC-like, C-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.39  E-value=4.1e-13  Score=96.55  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             CCCCChHHHhhcCCCeEEEEEeeccccCCCCCCCCceE--EEEEEeCCceEEEEeecceehhhcccCCCCCcccccccee
Q 026585          142 RVVRIPLELERFKDRAMYVKYVGETVTTGSPSESDGVF--RLISFDMETECCTWGLADVRINREKAGKGRPLSKKQREWR  219 (236)
Q Consensus       142 RpL~~~~df~rf~G~~V~V~~~~~~~~~~~~~eg~k~f--~L~~vd~e~~~~~~~la~vk~nr~~~~KGr~~~kk~~~~~  219 (236)
                      |||++++||.||+|+.|+|+++       .|++|+++|  .|.+++++++++.+..           ++++       ..
T Consensus         1 RpL~~~~~f~r~~G~~v~v~l~-------~p~~g~k~f~G~L~~~~~~~i~l~~~~-----------~~~~-------~~   55 (74)
T d1ib8a1           1 RPLKTKDAVAGAVGKYIHVGLY-------QAIDKQKVFEGTLLAFEEDELTMEYMD-----------KTRK-------KT   55 (74)
T ss_dssp             SCCSSHHHHHHHCSEEEEEECS-------SCSSSCSEEEEEEEEEETTEEEEEEEC-----------SSCE-------EE
T ss_pred             CCcCCHHHHHHhCCCEEEEEEe-------cccCCceEEEEEEEeecCCeEEEEEec-----------Cccc-------EE
Confidence            8999999999999999999999       888999999  9999999988775531           1111       24


Q ss_pred             eeeccccccceEEEec
Q 026585          220 LNTTFDSLRLVRLHSD  235 (236)
Q Consensus       220 l~ipf~~I~karL~~e  235 (236)
                      ++|||++|++|||.++
T Consensus        56 ~~i~~~~I~kArL~ve   71 (74)
T d1ib8a1          56 VQIPYSLVSKARLAVK   71 (74)
T ss_dssp             EEECSSCCSSCEEECS
T ss_pred             EEEcHHHheeEEEEEE
Confidence            7999999999999986