Citrus Sinensis ID: 026586

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEEAMLF
cccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHcccEEEEEcccccccEEEEEEEccccccccccEEEEEEEEcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHcccccccccccccccccccc
ccccccccccccHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEHHHcccHHHHHHHcHcHHHHHHHHHccEEEEcccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEEcEEEEcccccccHcccccccccccccccccHccccccccccccccHHHHHHHHHHHHHcccccHHHHcccccccccccccccccc
mvadkgkktkveeENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIrkpvydkrndIIKSIPDFWLTAFishpalgellseEDQKIFRYLSslevedfkdvksgysitfnfspnpyfednkltktftfldddgsmkITATSIKwkegmgipngvnhekkgnkrplaeesfftwfsdtqekdtIDGIQDEVAEIIKedlwpnpltyfnneadeeefegdeeamlf
mvadkgkktkveeenaeqidselvlSIEKLQEIQDELEKINeeasekvleveqkyseirkpvydkrnDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSlevedfkdvKSGYSITfnfspnpyfedNKLTKTftfldddgsmKITATsikwkegmgipngvnhekkgnkrpLAEESFFTWFSDTQEKDTIDGIQDEVAEIIkedlwpnpLTYFNNEADEEEFEGDEEAMLF
MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYfnneadeeefegdeeaMLF
******************************************************YSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGI*****************ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFN*****************
**************************IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGI*****************ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFN***************L*
*****************QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEAD*************
*****************QIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIP*G*************EESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNE***************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVADKGKKTKVEEENxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDEEAMLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query236 2.2.26 [Sep-21-2011]
P53997269 Protein SET OS=Drosophila yes no 0.796 0.698 0.45 4e-45
Q01105290 Protein SET OS=Homo sapie yes no 0.792 0.644 0.448 1e-44
Q9EQU5289 Protein SET OS=Mus muscul yes no 0.792 0.647 0.448 2e-44
Q63945289 Protein SET OS=Rattus nor yes no 0.792 0.647 0.448 2e-44
Q9H2G4 693 Testis-specific Y-encoded no no 0.805 0.274 0.368 5e-33
Q8N831410 Testis-specific Y-encoded no no 0.771 0.443 0.371 7e-33
Q9BE64 695 Testis-specific Y-encoded N/A no 0.805 0.273 0.364 3e-32
Q7TQI8 677 Testis-specific Y-encoded no no 0.805 0.280 0.344 5e-32
Q9H0U9437 Testis-specific Y-encoded no no 0.766 0.414 0.355 7e-32
Q9UJ04414 Testis-specific Y-encoded no no 0.775 0.442 0.357 8e-32
>sp|P53997|SET_DROME Protein SET OS=Drosophila melanogaster GN=Set PE=1 SV=2 Back     alignment and function desciption
 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/200 (45%), Positives = 136/200 (68%), Gaps = 12/200 (6%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           ++E++   Q+E++ +NE+ASE++L+VEQKY+++RKP Y+KR++++K IP+FW+T+FI+HP
Sbjct: 32  ALEQIDACQNEIDALNEKASEEILKVEQKYNKLRKPCYEKRSELVKRIPNFWVTSFINHP 91

Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  +L EE+++    L+ LEVE+F+D+KSGY I F+F  NPYFE+  LTK F       
Sbjct: 92  QVSGILDEEEEECLHALNKLEVEEFEDIKSGYRINFHFDENPYFENKVLTKEFHLNSAAA 151

Query: 146 S-----MKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE--SFFTWFSDTQEKDTIDGI 198
           S        T+T IKWKEG  +   +  +  GNK+    E  +FF WFS     D  D +
Sbjct: 152 SENGDWPASTSTPIKWKEGKNLLKLLLTKPYGNKKKRNSEYKTFFDWFS-----DNTDPV 206

Query: 199 QDEVAEIIKEDLWPNPLTYF 218
            DE+AE+IK+DLWPNPL Y+
Sbjct: 207 NDEIAELIKDDLWPNPLQYY 226

Drosophila melanogaster (taxid: 7227)
>sp|Q01105|SET_HUMAN Protein SET OS=Homo sapiens GN=SET PE=1 SV=3 Back     alignment and function description
>sp|Q9EQU5|SET_MOUSE Protein SET OS=Mus musculus GN=Set PE=1 SV=1 Back     alignment and function description
>sp|Q63945|SET_RAT Protein SET OS=Rattus norvegicus GN=Set PE=1 SV=2 Back     alignment and function description
>sp|Q9H2G4|TSYL2_HUMAN Testis-specific Y-encoded-like protein 2 OS=Homo sapiens GN=TSPYL2 PE=1 SV=1 Back     alignment and function description
>sp|Q8N831|TSYL6_HUMAN Testis-specific Y-encoded-like protein 6 OS=Homo sapiens GN=TSPYL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9BE64|TSYL2_MACFA Testis-specific Y-encoded-like protein 2 OS=Macaca fascicularis GN=TSPYL2 PE=1 SV=1 Back     alignment and function description
>sp|Q7TQI8|TSYL2_MOUSE Testis-specific Y-encoded-like protein 2 OS=Mus musculus GN=Tspyl2 PE=1 SV=1 Back     alignment and function description
>sp|Q9H0U9|TSYL1_HUMAN Testis-specific Y-encoded-like protein 1 OS=Homo sapiens GN=TSPYL1 PE=1 SV=3 Back     alignment and function description
>sp|Q9UJ04|TSYL4_HUMAN Testis-specific Y-encoded-like protein 4 OS=Homo sapiens GN=TSPYL4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
225456743268 PREDICTED: protein SET [Vitis vinifera] 0.974 0.858 0.804 1e-104
26451105228 unknown protein [Arabidopsis thaliana] g 0.957 0.991 0.794 2e-97
356508564261 PREDICTED: protein SET-like [Glycine max 0.927 0.839 0.792 3e-96
356516792263 PREDICTED: protein SET-like isoform 1 [G 0.927 0.832 0.797 4e-96
6730705255 Putative phospatase 2A inhibitor [Arabid 0.927 0.858 0.800 4e-96
225452785255 PREDICTED: protein SET [Vitis vinifera] 0.923 0.854 0.790 6e-96
296082895253 unnamed protein product [Vitis vinifera] 0.923 0.861 0.790 1e-95
255638203263 unknown [Glycine max] 0.927 0.832 0.792 3e-95
224119088242 nucleosome/chromatin assembly factor gro 0.974 0.950 0.764 8e-95
18394656256 template-activating factor I [Arabidopsi 0.927 0.855 0.797 8e-95
>gi|225456743|ref|XP_002275632.1| PREDICTED: protein SET [Vitis vinifera] gi|297733991|emb|CBI15238.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/235 (80%), Positives = 216/235 (91%), Gaps = 5/235 (2%)

Query: 1   MVADKGKKTKV----EEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYS 56
           MVADKGKK K     EE N++ ID +LVLSIEKLQEIQD+LEKINEEAS+KVLEVEQKY+
Sbjct: 1   MVADKGKKLKQSEKEEEVNSDHIDGDLVLSIEKLQEIQDDLEKINEEASDKVLEVEQKYN 60

Query: 57  EIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSG 116
           EIRKP+YDKRNDIIKSIPDFWLTAF+SHPALG+LLSEEDQKIF+YLSSLEVEDFKDVKSG
Sbjct: 61  EIRKPIYDKRNDIIKSIPDFWLTAFLSHPALGDLLSEEDQKIFKYLSSLEVEDFKDVKSG 120

Query: 117 YSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRP 176
           YSITFNF+PNP+FED KL KTFTFL D+G  KI+ TSIKWK+GMGIPNGVNHEKKGNKRP
Sbjct: 121 YSITFNFNPNPFFEDTKLKKTFTFL-DEGITKISVTSIKWKDGMGIPNGVNHEKKGNKRP 179

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEADEEEFEGDE 231
           +A+ SFF+WFS+TQ+KD +D I DE+AEIIKEDLWPNPLTYFN+EADEE+F+G++
Sbjct: 180 IADASFFSWFSETQQKDIMDDIHDEIAEIIKEDLWPNPLTYFNSEADEEDFDGED 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|26451105|dbj|BAC42657.1| unknown protein [Arabidopsis thaliana] gi|28950777|gb|AAO63312.1| At1g18800 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356508564|ref|XP_003523025.1| PREDICTED: protein SET-like [Glycine max] Back     alignment and taxonomy information
>gi|356516792|ref|XP_003527077.1| PREDICTED: protein SET-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|6730705|gb|AAF27100.1|AC011809_9 Putative phospatase 2A inhibitor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225452785|ref|XP_002283325.1| PREDICTED: protein SET [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082895|emb|CBI22196.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255638203|gb|ACU19415.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224119088|ref|XP_002317982.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222858655|gb|EEE96202.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18394656|ref|NP_564063.1| template-activating factor I [Arabidopsis thaliana] gi|21555241|gb|AAM63812.1| putative SET protein, phospatase 2A inhibitor [Arabidopsis thaliana] gi|332191644|gb|AEE29765.1| template-activating factor I [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
TAIR|locus:2034995256 NRP2 "AT1G18800" [Arabidopsis 0.915 0.843 0.794 4.5e-91
TAIR|locus:2019075264 NRP1 "AT1G74560" [Arabidopsis 0.889 0.795 0.760 3.4e-84
ZFIN|ZDB-GENE-030131-433275 setb "SET translocation (myelo 0.830 0.712 0.447 1.8e-46
UNIPROTKB|F1RR69289 SET "Uncharacterized protein" 0.847 0.692 0.435 6.2e-46
UNIPROTKB|F2Z4L4277 SET "Uncharacterized protein" 0.830 0.707 0.437 1.3e-45
FB|FBgn0014879269 Set "Set" [Drosophila melanoga 0.847 0.743 0.439 1.6e-45
UNIPROTKB|Q5VXV2268 SET "Protein SET" [Homo sapien 0.817 0.720 0.440 1.6e-45
MGI|MGI:1860267289 Set "SET nuclear oncogene" [Mu 0.855 0.698 0.427 2.1e-45
RGD|1307467289 Set "SET nuclear oncogene" [Ra 0.855 0.698 0.427 2.1e-45
UNIPROTKB|Q01105290 SET "Protein SET" [Homo sapien 0.788 0.641 0.451 2.7e-45
TAIR|locus:2034995 NRP2 "AT1G18800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 174/219 (79%), Positives = 197/219 (89%)

Query:     1 MVADKGKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRK 60
             MV DK KK K EEEN EQID+ELVLSIEKLQEIQD+LEKINE+AS++VLEVEQKY+ IRK
Sbjct:     1 MVTDKSKKAKTEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60

Query:    61 PVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSIT 120
             PVYDKRN+IIK+IPDFWLTAF+SHPALGELL+EEDQKIF+YLSSL+VED KDVKSGYSIT
Sbjct:    61 PVYDKRNEIIKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSIT 120

Query:   121 FNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPLAEE 180
             F+F+PNP+FED KLTKTFTFL++ G+ KITAT IKWKEG G+ NGVNHEK GNKR L EE
Sbjct:   121 FSFNPNPFFEDGKLTKTFTFLEE-GTTKITATPIKWKEGKGLANGVNHEKNGNKRALPEE 179

Query:   181 SFFTWFSDTQEKDTI-DGIQDE-VAEIIKEDLWPNPLTY 217
             SFFTWFSD Q K+ + D +QDE VA+IIKEDLWPNPLTY
Sbjct:   180 SFFTWFSDAQHKEDVEDEMQDEQVADIIKEDLWPNPLTY 218
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006334 "nucleosome assembly" evidence=IEA;ISS
GO:0003682 "chromatin binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0008283 "cell proliferation" evidence=IGI
GO:0010311 "lateral root formation" evidence=IGI
GO:0030154 "cell differentiation" evidence=IGI
GO:0042393 "histone binding" evidence=IPI
TAIR|locus:2019075 NRP1 "AT1G74560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-433 setb "SET translocation (myeloid leukemia-associated) B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR69 SET "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4L4 SET "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0014879 Set "Set" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VXV2 SET "Protein SET" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1860267 Set "SET nuclear oncogene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307467 Set "SET nuclear oncogene" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q01105 SET "Protein SET" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
pfam00956236 pfam00956, NAP, Nucleosome assembly protein (NAP) 2e-51
PTZ00008185 PTZ00008, PTZ00008, (NAP-S) nucleosome assembly pr 3e-25
PTZ00007337 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr 1e-19
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP) Back     alignment and domain information 
 Score =  166 bits (423), Expect = 2e-51
 Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 37/234 (15%)

Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII--------------- 70
            +E L+ +Q EL+++  +  E+VLE+E+KY ++ +P+YDKR +II               
Sbjct: 3   RVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTEVEEEEPE 62

Query: 71  -KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYF 129
            K IP FWLTA  +HP L E+++E D++  +YL+ + VE  +D K G+ + F+F+PNPYF
Sbjct: 63  EKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHFAPNPYF 122

Query: 130 EDNKLTKTFTFLDDDGS--MKITATSIKWKEGM-----GIPNGVNHEKKGNKRPLAE--- 179
            +  LTKT+   D+     +K   T I+WKEG       +     ++K G  R + +   
Sbjct: 123 TNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQTRTITKTVP 182

Query: 180 -ESFFTWFSDTQEKDTIDG----------IQDEVAEIIKEDLWPNPLTYFNNEA 222
            ESFF +FS  +  D  D           +  E+ EIIK+DL P  L Y+  EA
Sbjct: 183 AESFFNFFSPPKVPDDDDDDDEELEEELELDYEIGEIIKDDLIPRALDYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236
>gnl|CDD|185394 PTZ00008, PTZ00008, (NAP-S) nucleosome assembly protein-S; Provisional Back     alignment and domain information
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 236
PTZ00007337 (NAP-L) nucleosome assembly protein -L; Provisiona 100.0
KOG1507358 consensus Nucleosome assembly protein NAP-1 [Chrom 100.0
PTZ00008185 (NAP-S) nucleosome assembly protein-S; Provisional 100.0
PF00956244 NAP: Nucleosome assembly protein (NAP); InterPro: 100.0
KOG1508260 consensus DNA replication factor/protein phosphata 100.0
PF1162949 Mst1_SARAH: C terminal SARAH domain of Mst1; Inter 95.75
PF07352149 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; I 90.82
COG4396170 Mu-like prophage host-nuclease inhibitor protein G 85.01
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.9e-60  Score=424.07  Aligned_cols=219  Identities=30%  Similarity=0.582  Sum_probs=191.2

Q ss_pred             chhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhc----------cCchhHH
Q 026586            9 TKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIK----------SIPDFWL   78 (236)
Q Consensus         9 ~~~~~e~~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~----------~IP~FW~   78 (236)
                      ..++++.+..||+.+++++.+|+.||.++..|+.++++++++|+++|.++++|+|++|++||+          |||+||+
T Consensus        25 ~~~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~G~~~~e~~~~gIP~FWl  104 (337)
T PTZ00007         25 IELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALVQNGGAEIGTPGLPQFWL  104 (337)
T ss_pred             cccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCcccccccCCcccHHH
Confidence            345567788999999999999999999999999999999999999999999999999999999          6999999


Q ss_pred             HHHhhhhhhhcccCcchHHhhcCcceeEEEEccCCC-cceEEEEEecCCCcccCceEEEEEEeeCCC---CC--eeeeec
Q 026586           79 TAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVK-SGYSITFNFSPNPYFEDNKLTKTFTFLDDD---GS--MKITAT  152 (236)
Q Consensus        79 ~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~-~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~---g~--~~~~~t  152 (236)
                      +||+||+.++.+|+++|++||+||+||+|++..+.. .||+|+|+|++||||+|++|||+|++....   |+  ..+++|
T Consensus       105 ~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p~~~~~~~t  184 (337)
T PTZ00007        105 TAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEPLLSNTVAT  184 (337)
T ss_pred             HHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCceeecceee
Confidence            999999999999999999999999999999887654 899999999999999999999999987423   33  246899


Q ss_pred             cccccCCCCCCCccccccCCCC-----c----cccccccccccccCCCCCcc-----C-----------CchHHHHHHHh
Q 026586          153 SIKWKEGMGIPNGVNHEKKGNK-----R----PLAEESFFTWFSDTQEKDTI-----D-----------GIQDEVAEIIK  207 (236)
Q Consensus       153 ~I~Wk~gk~lt~~~~~~k~~~~-----~----~~~~~SFF~fF~~~~~~~~~-----~-----------~~d~ei~~~i~  207 (236)
                      +|+||+|++||++.+++|++++     |    +.+..|||+||+++..++..     +           +.|++||++|+
T Consensus       185 ~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~~~e~~~e~~~ee~~~~l~~DyeiG~~ik  264 (337)
T PTZ00007        185 EIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDEELEKMSKHEIAELEMIVETDYEIGITIR  264 (337)
T ss_pred             eceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCcccccccccchhHHHHHHHHHHhHHHHHHHH
Confidence            9999999999998776554433     2    34679999999998766321     0           14779999999


Q ss_pred             hccccchhhhhccCCCcccc
Q 026586          208 EDLWPNPLTYFNNEADEEEF  227 (236)
Q Consensus       208 ~~i~p~al~yy~~~~~~~~~  227 (236)
                      ++|||+||.||+|++.+++.
T Consensus       265 d~IIP~AV~yftGea~d~~~  284 (337)
T PTZ00007        265 DKLIPYAVYWFLGEAIDEDS  284 (337)
T ss_pred             HhcccccHHhhCCCcccccc
Confidence            99999999999999665443

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional Back     alignment and domain information
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus Back     alignment and domain information
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair] Back     alignment and domain information
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name Back     alignment and domain information
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo [] Back     alignment and domain information
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
2e50_A225 Crystal Structure Of SetTAF-1betaINHAT Length = 225 7e-46
3kyp_A193 Crystal Structure Of Nucleosome Assembly Protein S 7e-24
3hfd_A276 Nucleosome Assembly Protein 1 From Plasmodium Knowl 3e-13
3gyv_A249 Crystal Structure Of Nucleosome Assembly Protein Fr 7e-12
3fs3_A359 Crystal Structure Of Malaria Parasite Nucleosome As 1e-11
2z2r_A292 Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng 5e-09
2ayu_A417 The Structure Of Nucleosome Assembly Protein Sugges 7e-09
3q33_B232 Structure Of The Rtt109-AccoaVPS75 COMPLEX AND IMPL 3e-04
3c9d_A259 Crystal Structure Of Vps75 Length = 259 4e-04
2zd7_A264 The Structure Of Vps75 (Vacuolar Protein Sorting-As 4e-04
3c9b_A259 Crystal Structure Of Semet Vps75 Length = 259 4e-04
3dm7_A234 Crystal Structure Of The Vps75 Histone Chaperone Le 7e-04
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225 Back     alignment and structure 
Iteration: 1

 Score =  180 bits (456), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 88/195 (45%), Positives = 132/195 (67%), Gaps = 9/195 (4%)
Query: 26  SIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHP 85
           +IE + E+Q+E++++NE+ASE++L+VEQKY+++R+P + KR+++I  IP+FW+T F++HP
Sbjct: 31  AIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHP 90
Query: 86  ALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDG 145
            +  LL EED++   YL+ +EV +F+D+KSGY I F F  NPYFE+  L+K F  +++ G
Sbjct: 91  QVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEF-HMNESG 149
Query: 146 SMKITATSIKWKEG--MGIPNGVNHEKKGNKRPLAE-ESFFTWFSDTQEKDTIDGIQDEV 202
                +T IKWK G  M   +     K   KR   E ESFFTWF+D       D   DE+
Sbjct: 150 DPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHS-----DAGADEL 204
Query: 203 AEIIKEDLWPNPLTY 217
            E+IK+D+WPNPL Y
Sbjct: 205 GEVIKDDIWPNPLQY 219
>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S (Pfnaps) Plasmodium Falciparum Length = 193 Back     alignment and structure
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276 Back     alignment and structure
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249 Back     alignment and structure
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359 Back     alignment and structure
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292 Back     alignment and structure
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417 Back     alignment and structure
>pdb|3Q33|B Chain B, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation Length = 232 Back     alignment and structure
>pdb|3C9D|A Chain A, Crystal Structure Of Vps75 Length = 259 Back     alignment and structure
>pdb|2ZD7|A Chain A, The Structure Of Vps75 (Vacuolar Protein Sorting-Associated Protein 75) Length = 264 Back     alignment and structure
>pdb|3C9B|A Chain A, Crystal Structure Of Semet Vps75 Length = 259 Back     alignment and structure
>pdb|3DM7|A Chain A, Crystal Structure Of The Vps75 Histone Chaperone Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 5e-55
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 1e-49
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 3e-43
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 4e-34
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 7e-33
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225 Back     alignment and structure
 Score =  174 bits (443), Expect = 5e-55
 Identities = 87/226 (38%), Positives = 139/226 (61%), Gaps = 12/226 (5%)

Query: 3   ADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIR 59
           A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY+++R
Sbjct: 5   AAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLR 64

Query: 60  KPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSI 119
           +P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY I
Sbjct: 65  QPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRI 124

Query: 120 TFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKR---P 176
            F F  NPYFE+  L+K F   ++ G     +T IKWK G  +    +  +    R    
Sbjct: 125 DFYFDENPYFENKVLSKEFHM-NESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQH 183

Query: 177 LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNNEA 222
              ESFFTWF+D  +        DE+ E+IK+D+WPNPL Y+    
Sbjct: 184 EEPESFFTWFTDHSDAG-----ADELGEVIKDDIWPNPLQYYLVPD 224
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193 Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264 Back     alignment and structure
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359 Back     alignment and structure
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 100.0
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 100.0
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 100.0
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 100.0
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 100.0
2jo8_A51 Serine/threonine-protein kinase 4; C-terminal doma 94.23
2p2u_A171 HOST-nuclease inhibitor protein GAM, putative; str 89.25
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Back     alignment and structure
Probab=100.00  E-value=3.1e-63  Score=426.50  Aligned_cols=214  Identities=43%  Similarity=0.833  Sum_probs=175.2

Q ss_pred             CCCCccccchhhhhc-----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCch
Q 026586            1 MVADKGKKTKVEEEN-----AEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (236)
Q Consensus         1 ~~~~~~k~~~~~~e~-----~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~   75 (236)
                      |++|++||+|+.+++     ....+++++.+|.+|+.||.+++.++.++++|+++|+++|+++++|+|++|++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP~   80 (225)
T 2e50_A            1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (225)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhcccc
Confidence            888999999999864     356789999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhhhhhcccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCceEEEEEEeeCCCCCeeeeecccc
Q 026586           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (236)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (236)
                      ||++||+||+.++.+|+++|+++|+||+||+|++.++++.||+|+|+|++||||+|++|||+|++.. +|.+++++|+|+
T Consensus        81 FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~-~g~~~s~~t~I~  159 (225)
T 2e50_A           81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (225)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecC-CCCcccCCCcce
Confidence            9999999999999999999999999999999999988789999999999999999999999999998 888889999999


Q ss_pred             ccCCCCCCCcccccc--CCCCcc-ccccccccccccCCCCCccCCchHHHHHHHhhccccchhhhhcc
Q 026586          156 WKEGMGIPNGVNHEK--KGNKRP-LAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN  220 (236)
Q Consensus       156 Wk~gk~lt~~~~~~k--~~~~~~-~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~al~yy~~  220 (236)
                      ||+|+++|++...++  +|++|. .+..|||+||+++..+     .+++||++|+++|||+||+||+.
T Consensus       160 Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~-----~~~eige~ikd~i~P~av~yy~~  222 (225)
T 2e50_A          160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLV  222 (225)
T ss_dssp             BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred             ecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCC-----chhHHHHHHHhCccccHHHHhcC
Confidence            999999998865443  344444 3468999999998765     35899999999999999999985
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Back     alignment and structure
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Back     alignment and structure
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} Back     alignment and structure
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 236
d2e50a1222 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie 4e-59
d2ayua1301 d.305.1.1 (A:70-370) Nucleosome assembly protein, 3e-41
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  184 bits (468), Expect = 4e-59
 Identities = 87/224 (38%), Positives = 140/224 (62%), Gaps = 12/224 (5%)

Query: 1   MVADKGKKTKVEEENAEQIDS---ELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSE 57
             A K  K ++   +    ++   E   +IE + E+Q+E++++NE+ASE++L+VEQKY++
Sbjct: 3   AQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNK 62

Query: 58  IRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGY 117
           +R+P + KR+++I  IP+FW+T F++HP +  LL EED++   YL+ +EV +F+D+KSGY
Sbjct: 63  LRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGY 122

Query: 118 SITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNKRPL 177
            I F F  NPYFE+  L+K F  +++ G     +T IKWK G  +    +  +    R  
Sbjct: 123 RIDFYFDENPYFENKVLSKEF-HMNESGDPSSKSTEIKWKSGKDMTKRSSQTQNKASRKR 181

Query: 178 AE---ESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 218
                ESFFTWF+D  +        DE+ E+IK+D+WPNPL Y+
Sbjct: 182 QHEEPESFFTWFTDHSDAGA-----DELGEVIKDDIWPNPLQYY 220
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
d2e50a1222 Protein SET {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2ayua1301 Nucleosome assembly protein, NAP {Baker's yeast (S 100.0
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-61  Score=412.26  Aligned_cols=214  Identities=42%  Similarity=0.828  Sum_probs=169.4

Q ss_pred             CCCCccccchhh-----hhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHhhhhhhccCch
Q 026586            1 MVADKGKKTKVE-----EENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDIIKSIPD   75 (236)
Q Consensus         1 ~~~~~~k~~~~~-----~e~~~~~~~~~~~~i~~L~~lQ~e~~~le~~~~~e~~~le~k~~~~~~Pl~~kR~eiI~~IP~   75 (236)
                      ||||++|..+.+     +.+.+.++++++.+|.+|+.||.++++++.++++++++|+++|.++++|+|++|++||+|||+
T Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~iQ~e~~~l~~e~~~e~~~le~k~~~~~~ply~~R~~iI~gIP~   80 (222)
T d2e50a1           1 MSAQAAKVSKKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPN   80 (222)
T ss_dssp             CHHHHHHHHHHHTTC-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             CCCccccccchhcccccCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc
Confidence            778666443332     255678999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhhhhhcccCcchHHhhcCcceeEEEEccCCCcceEEEEEecCCCcccCceEEEEEEeeCCCCCeeeeecccc
Q 026586           76 FWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIK  155 (236)
Q Consensus        76 FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~ve~~~d~~~~f~l~F~F~~NpyF~N~~L~K~~~~~~~~g~~~~~~t~I~  155 (236)
                      ||++||+||+.++.+|++.|+++|+||+||+|++.+++..||+|+|+|++||||+|++|+|+|+++. +|.++++||+|+
T Consensus        81 FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~-~~~~~~~~t~I~  159 (222)
T d2e50a1          81 FWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNE-SGDPSSKSTEIK  159 (222)
T ss_dssp             HHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC--------CEEECCCC
T ss_pred             HHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecC-CCCcccccccce
Confidence            9999999999999999999999999999999999988889999999999999999999999999998 888889999999


Q ss_pred             ccCCCCCCCccccccCCC---CccccccccccccccCCCCCccCCchHHHHHHHhhccccchhhhhcc
Q 026586          156 WKEGMGIPNGVNHEKKGN---KRPLAEESFFTWFSDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYFNN  220 (236)
Q Consensus       156 Wk~gk~lt~~~~~~k~~~---~~~~~~~SFF~fF~~~~~~~~~~~~d~ei~~~i~~~i~p~al~yy~~  220 (236)
                      ||+|+++|++..+++++.   .......|||+||+++..+     .+.+||++|+++|||+||.||+.
T Consensus       160 Wk~gkd~t~k~~~~~~~~~~~~~~~~~~SFFnfF~~~~~~-----~~deI~~~i~d~i~p~av~yyL~  222 (222)
T d2e50a1         160 WKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDA-----GADELGEVIKDDIWPNPLQYYLV  222 (222)
T ss_dssp             BCSSCCC----------------------CGGGGC-----------CHHHHHHHHHTTTTCSHHHHCC
T ss_pred             ecCCCccccccccccccCccccccCCCCChhhcCCCCCCC-----CchHHHHHHHhhhchhhhHhhcC
Confidence            999999998765543322   2234668999999998765     45689999999999999999983
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure