Citrus Sinensis ID: 026600

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKDSKSKSE
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHccHHHEccccccHccEEEEEHHHHHHHHHHHHHHHHHccccHHHHcccccccc
MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVlglghapsgevfkCGLSIISMFLFAFLGkvtkggaynpltvlasgisgdfsnflftvgaripaqvigsiTGVRfildtfpqigrgpslnvgihhgaLTEGLLTFAIVTISLGLarkipgsfyMKTWISSVSKLALHIlgsdmtggcmnpasVMGWAYargdhitkEHILVYWLAPIQATVIALWLFKLVVrplaeekkdskskse
MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRplaeekkdskskse
MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAeekkdskskse
***IRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRP*************
**GIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLV****************
MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPL************
MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAE**********
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKDSKSKSE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query236 2.2.26 [Sep-21-2011]
Q9M1K3237 Probable aquaporin SIP2-1 yes no 1.0 0.995 0.645 6e-89
Q10M80250 Aquaporin SIP2-1 OS=Oryza yes no 0.978 0.924 0.506 6e-63
Q9ATM1249 Aquaporin SIP2-1 OS=Zea m N/A no 0.978 0.927 0.516 4e-58
Q5VR89246 Aquaporin SIP1-1 OS=Oryza no no 0.737 0.707 0.371 3e-21
Q9ATM3245 Aquaporin SIP1-1 OS=Zea m N/A no 0.733 0.706 0.379 3e-20
Q9ATM2243 Aquaporin SIP1-2 OS=Zea m N/A no 0.728 0.707 0.376 3e-20
Q9FK43243 Probable aquaporin SIP1-2 no no 0.966 0.938 0.288 5e-20
Q9M8W5240 Aquaporin SIP1-1 OS=Arabi no no 0.915 0.9 0.288 8e-16
P08995271 Nodulin-26 OS=Glycine max no no 0.665 0.579 0.288 8e-06
Q9NHW7249 Aquaporin AQPAe.a OS=Aede N/A no 0.885 0.839 0.264 9e-05
>sp|Q9M1K3|SIP21_ARATH Probable aquaporin SIP2-1 OS=Arabidopsis thaliana GN=SIP2-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  327 bits (837), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 153/237 (64%), Positives = 193/237 (81%), Gaps = 1/237 (0%)

Query: 1   MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHA-PSGEVFKCGLSIISMFLFAFLG 59
           M  I LVV+D +LSFMW+W  VL+ I V+ VLG     PSGE+ +   SIISMF+FA+L 
Sbjct: 1   MGRIGLVVTDLVLSFMWIWAGVLVNILVHGVLGFSRTDPSGEIVRYLFSIISMFIFAYLQ 60

Query: 60  KVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSL 119
           + TKGG YNPLT LA+G+SG FS+F+F+V  RIP +VIGSI  V+ I+  FP+IG+GP L
Sbjct: 61  QATKGGLYNPLTALAAGVSGGFSSFIFSVFVRIPVEVIGSILAVKHIIHVFPEIGKGPKL 120

Query: 120 NVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMN 179
           NV IHHGALTEG+LTF IV +S+GL RKIPGSF+MKTWI S++KL LHILGSD+TGGCMN
Sbjct: 121 NVAIHHGALTEGILTFFIVLLSMGLTRKIPGSFFMKTWIGSLAKLTLHILGSDLTGGCMN 180

Query: 180 PASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKDSKSKSE 236
           PA+VMGWAYARG+HITKEH+LVYWL P++AT++A+W FK+V +PL EE++  K+KSE
Sbjct: 181 PAAVMGWAYARGEHITKEHLLVYWLGPVKATLLAVWFFKVVFKPLTEEQEKPKAKSE 237
Water channel required to facilitate the transport of water across cell membrane. Inactive in yeast cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q10M80|SIP21_ORYSJ Aquaporin SIP2-1 OS=Oryza sativa subsp. japonica GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM1|SIP21_MAIZE Aquaporin SIP2-1 OS=Zea mays GN=SIP2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q5VR89|SIP11_ORYSJ Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9ATM3|SIP11_MAIZE Aquaporin SIP1-1 OS=Zea mays GN=SIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ATM2|SIP12_MAIZE Aquaporin SIP1-2 OS=Zea mays GN=SIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FK43|SIP12_ARATH Probable aquaporin SIP1-2 OS=Arabidopsis thaliana GN=SIP1-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8W5|SIP11_ARATH Aquaporin SIP1-1 OS=Arabidopsis thaliana GN=SIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q9NHW7|AQP_AEDAE Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
224137540238 aquaporin, MIP family, SIP subfamily [Po 0.983 0.974 0.768 1e-101
255565376240 aquaporin sip2.1, putative [Ricinus comm 0.983 0.966 0.751 3e-99
388509678239 unknown [Lotus japonicus] 0.983 0.970 0.724 2e-98
225440240236 PREDICTED: probable aquaporin SIP2-1 [Vi 0.944 0.944 0.766 2e-96
224086703238 aquaporin, MIP family, SIP subfamily [Po 0.961 0.953 0.717 1e-94
356571855236 PREDICTED: probable aquaporin SIP2-1-lik 1.0 1.0 0.703 2e-93
357509129239 hypothetical protein MTR_7g088310 [Medic 0.978 0.966 0.693 3e-91
449437680238 PREDICTED: probable aquaporin SIP2-1-lik 0.991 0.983 0.692 5e-91
334186042260 putative aquaporin SIP2-1 [Arabidopsis t 1.0 0.907 0.645 3e-87
15230175237 putative aquaporin SIP2-1 [Arabidopsis t 1.0 0.995 0.645 4e-87
>gi|224137540|ref|XP_002322583.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] gi|222867213|gb|EEF04344.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/233 (76%), Positives = 205/233 (87%), Gaps = 1/233 (0%)

Query: 5   RLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKG 64
           RL++SDF++S MWVW   LIKIFV+KVLG+GH   GE  K  LSI++MFLFAFLGKVTKG
Sbjct: 6   RLILSDFVVSLMWVWSGSLIKIFVFKVLGMGHDSRGEFLKNSLSIMNMFLFAFLGKVTKG 65

Query: 65  GAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIH 124
           GAYNPLT+L+S ISGDFS FLFT+GARIPAQVIGSITGVR  +DTFP+IG GP L V IH
Sbjct: 66  GAYNPLTILSSAISGDFSQFLFTIGARIPAQVIGSITGVRLFIDTFPEIGLGPRLTVDIH 125

Query: 125 HGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVM 184
            GALTEGLLTFAIVTISLGLARKIPGSF+MKTWISSVSKL+LHILGSD+TGGCMNPASVM
Sbjct: 126 KGALTEGLLTFAIVTISLGLARKIPGSFFMKTWISSVSKLSLHILGSDLTGGCMNPASVM 185

Query: 185 GWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKDS-KSKSE 236
           GWAYARGDHITKEHILVYWLAPI+ T++A+W FKL+ RP  +++K+  K K+E
Sbjct: 186 GWAYARGDHITKEHILVYWLAPIEGTLLAVWTFKLLFRPQKQDEKEKLKGKTE 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255565376|ref|XP_002523679.1| aquaporin sip2.1, putative [Ricinus communis] gi|223537079|gb|EEF38714.1| aquaporin sip2.1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388509678|gb|AFK42905.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225440240|ref|XP_002283874.1| PREDICTED: probable aquaporin SIP2-1 [Vitis vinifera] gi|297741728|emb|CBI32860.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224086703|ref|XP_002307939.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] gi|222853915|gb|EEE91462.1| aquaporin, MIP family, SIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356571855|ref|XP_003554087.1| PREDICTED: probable aquaporin SIP2-1-like [Glycine max] Back     alignment and taxonomy information
>gi|357509129|ref|XP_003624853.1| hypothetical protein MTR_7g088310 [Medicago truncatula] gi|217075650|gb|ACJ86185.1| unknown [Medicago truncatula] gi|355499868|gb|AES81071.1| hypothetical protein MTR_7g088310 [Medicago truncatula] gi|388495752|gb|AFK35942.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449437680|ref|XP_004136619.1| PREDICTED: probable aquaporin SIP2-1-like [Cucumis sativus] gi|449519786|ref|XP_004166915.1| PREDICTED: probable aquaporin SIP2-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334186042|ref|NP_001190113.1| putative aquaporin SIP2-1 [Arabidopsis thaliana] gi|332646071|gb|AEE79592.1| putative aquaporin SIP2-1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15230175|ref|NP_191254.1| putative aquaporin SIP2-1 [Arabidopsis thaliana] gi|32363418|sp|Q9M1K3.1|SIP21_ARATH RecName: Full=Probable aquaporin SIP2-1; AltName: Full=Small basic intrinsic protein 2-1; Short=AtSIP2;1 gi|14423566|gb|AAK62465.1|AF387020_1 putative protein [Arabidopsis thaliana] gi|6911865|emb|CAB72165.1| putative protein [Arabidopsis thaliana] gi|21592762|gb|AAM64711.1| small basic membrane integral protein ZmSIP2-1 [Arabidopsis thaliana] gi|30023710|gb|AAP13388.1| At3g56950 [Arabidopsis thaliana] gi|332646070|gb|AEE79591.1| putative aquaporin SIP2-1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query236
TAIR|locus:2146268243 SIP1;2 [Arabidopsis thaliana ( 0.923 0.897 0.290 4e-26
TAIR|locus:2103010240 SIP1A "small and basic intrins 0.932 0.916 0.303 9.7e-25
TAIR|locus:2168953250 TIP2;3 "tonoplast intrinsic pr 0.872 0.824 0.271 1.2e-07
UNIPROTKB|O77750323 AQP4 "Aquaporin-4" [Bos taurus 0.699 0.510 0.305 6.4e-07
UNIPROTKB|P55087323 AQP4 "Aquaporin-4" [Homo sapie 0.699 0.510 0.3 1.1e-06
FB|FBgn0015872245 Drip "Drip" [Drosophila melano 0.817 0.787 0.264 1.2e-06
TAIR|locus:2130883250 TIP2;2 "tonoplast intrinsic pr 0.868 0.82 0.243 1.3e-06
TIGR_CMR|BA_4742221 BA_4742 "aquaporin Z" [Bacillu 0.877 0.936 0.237 1.9e-06
UNIPROTKB|F1PEB5293 AQP4 "Uncharacterized protein" 0.699 0.563 0.305 2.1e-06
RGD|2143323 Aqp4 "aquaporin 4" [Rattus nor 0.703 0.513 0.312 8.1e-06
TAIR|locus:2146268 SIP1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 67/231 (29%), Positives = 122/231 (52%)

Query:     1 MAGIRLVVSDFILSFMWVWQSVLIKIFVYKVL------GLGHAPSGEVFKCGLSIISMFL 54
             M+ ++  + D +++F+WV  S    I    ++      G+  AP   V    +  +S+ +
Sbjct:     1 MSAVKSALGDMVITFLWVILSATFGIQTAAIVSAVGFHGITWAPL--VISTLVVFVSISI 58

Query:    55 FAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQ-- 112
             F  +G V  G ++NP    A   +G  S+ LF++  R PAQ IG+  G   I++  P+  
Sbjct:    59 FTVIGNVLGGASFNPCGNAAFYTAGVSSDSLFSLAIRSPAQAIGAAGGAITIMEMIPEKY 118

Query:   113 ---IGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHIL 169
                IG  PSL  G H+GA++E +L+F++  + L +  + P     KT++ +++ +++ ++
Sbjct:   119 KTRIGGKPSLQFGAHNGAISEVVLSFSVTFLVLLIILRGPRKLLAKTFLLALATVSVFVV 178

Query:   170 GSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLV 220
             GS  T   MNPA   GWAY    H T +H  VYW++     +++  LF+++
Sbjct:   179 GSKFTRPFMNPAIAFGWAYIYKSHNTWDHFYVYWISSYTGAILSAMLFRII 229
GO:0005215 "transporter activity" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0015250 "water channel activity" evidence=IGI;IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA
TAIR|locus:2103010 SIP1A "small and basic intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168953 TIP2;3 "tonoplast intrinsic protein 2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O77750 AQP4 "Aquaporin-4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P55087 AQP4 "Aquaporin-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0015872 Drip "Drip" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2130883 TIP2;2 "tonoplast intrinsic protein 2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4742 BA_4742 "aquaporin Z" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEB5 AQP4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|2143 Aqp4 "aquaporin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10M80SIP21_ORYSJNo assigned EC number0.50630.97880.924yesno
Q9M1K3SIP21_ARATHNo assigned EC number0.64551.00.9957yesno
Q9ATM1SIP21_MAIZENo assigned EC number0.51690.97880.9277N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-05
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 3e-05
pfam00230218 pfam00230, MIP, Major intrinsic protein 7e-05
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 7e-05
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 0.004
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information 
 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 19/174 (10%)

Query: 64  GGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRG------- 116
           GG  NP   LA  + G F   L  V   I AQ++G+I G   +   +  +          
Sbjct: 57  GGHINPAVTLALAVGGRFP--LIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNI 114

Query: 117 --------PSLNVGIHHGALTEGLLTFAIVTISLGLA--RKIPGSFYMKTWISSVSKLAL 166
                   PS  V   +    E + TF +V +          P    +      +   A+
Sbjct: 115 VAGIFGTYPSPGVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGLLVAAI 174

Query: 167 HILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLV 220
            + G  +TG  MNPA  +G A   G      +  VYW+ P+   +    ++  V
Sbjct: 175 GLAGGPITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228

Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms. Length = 228
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 236
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00026 298 aquaporin NIP; Provisional 99.64
PLN00184 296 aquaporin NIP1; Provisional 99.62
PLN00183 274 putative aquaporin NIP7; Provisional 99.55
PLN00166 250 aquaporin TIP2; Provisional 99.54
cd00333 228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.5
PLN00167 256 aquaporin TIP5; Provisional 99.49
PLN00027 252 aquaporin TIP; Provisional 99.47
PLN00182 283 putative aquaporin NIP4; Provisional 99.46
PTZ00016 294 aquaglyceroporin; Provisional 99.45
PRK05420 231 aquaporin Z; Provisional 99.44
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.35
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.23
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.1
KOG0223 238 consensus Aquaporin (major intrinsic protein famil 99.05
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.0
PRK11562268 nitrite transporter NirC; Provisional 84.74
PF04632 650 FUSC: Fusaric acid resistance protein family; Inte 84.35
PF01384 326 PHO4: Phosphate transporter family; InterPro: IPR0 83.54
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-55  Score=369.27  Aligned_cols=219  Identities=24%  Similarity=0.372  Sum_probs=191.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHHhcccCCcccChHHHHHHHHcCCC
Q 026600            2 AGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDF   81 (236)
Q Consensus         2 ~~~r~~~aEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~iS~Gah~NPavTla~~~~g~~   81 (236)
                      +.+|++++||+||++++|+||++.....+..+.... .++++++|+++.  ..++++|++| |||+|||||+++++.|++
T Consensus         9 ~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l-~~ial~~Gl~v~--v~i~~~g~iS-GaH~NPAVT~a~~~~~~i   84 (238)
T KOG0223|consen    9 SFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGL-LGIALAFGLAVF--VLVYSTGHIS-GAHFNPAVTLAFAVGGKI   84 (238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchh-HHHHHHHHHHHH--HHHhhhcccc-ccccCHHHHHHHHHhCCC
Confidence            568999999999999999999988754331111111 268899999984  4489999999 999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCCCCCCcchHHHHHHHHHHHHHHHHHHHh-hhccCCCCcc
Q 026600           82 SNFLFTVGARIPAQVIGSITGVRFILDTFPQI-------GRGPSLNVGIHHGALTEGLLTFAIVTISLG-LARKIPGSFY  153 (236)
Q Consensus        82 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-------~~~~~~~~~~~~~~~~E~~~T~~Lv~~il~-~~~~~~~~~~  153 (236)
                        ++.+++.|+.+|++|+++|+.+++.+.|++       ...++++.+.+|+++.|++.||.|+++++. .+|+|+  +.
T Consensus        85 --sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~--~~  160 (238)
T KOG0223|consen   85 --SLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRR--SE  160 (238)
T ss_pred             --cHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCC--cc
Confidence              999999999999999999999999999873       236778889999999999999999999999 555443  37


Q ss_pred             chhhHhHHHHHHHHHHhcCCCCCCcchHhHHHHHHhcCCCCCCCcceehhhhhHHHHHHHHHHHHHhcCCcccccccC
Q 026600          154 MKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKDS  231 (236)
Q Consensus       154 ~~p~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~~~~~~~~~~~~~wvy~v~P~lGa~~a~~~y~~l~~~~~~~~~~~  231 (236)
                      +.|+.||+++.+.+++.+++||++|||||+|||+++.+   .|++|||||+||++|+++++++|++++.|+.+|++++
T Consensus       161 ~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~~~~~~~~  235 (238)
T KOG0223|consen  161 LAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPDESEPTKS  235 (238)
T ss_pred             cHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCccccccCc
Confidence            89999999999999999999999999999999999998   6999999999999999999999999999994444433

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate Back     alignment and domain information
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query236
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 2e-10
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 2e-10
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 7e-10
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 7e-10
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-09
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-09
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 4e-09
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 4e-08
2o9g_A234 Aquaporin Z; integral membrane protein, structural 2e-07
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 7e-07
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-06
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 46/240 (19%), Positives = 91/240 (37%), Gaps = 21/240 (8%)

Query: 4   IRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEV------FKCGLSIISMFLFAF 57
            R VV++F+   ++++ S+   +  +  +                   GLSI ++   + 
Sbjct: 11  WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATL-AQSV 69

Query: 58  LGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITG---VRFILDTFPQIG 114
            G ++ G   NP   L   +S   S  +      I AQ +G+I     +  I  + P   
Sbjct: 70  -GHIS-GAHLNPAVTLGLLLSCQIS--VLRAIMYIIAQCVGAIVATAILSGITSSLPDNS 125

Query: 115 RG---PSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLAL-HILG 170
            G    +  V    G   E + T  +V   L    +          ++    +AL H+L 
Sbjct: 126 LGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLA 185

Query: 171 SDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKD 230
            D TG  +NPA   G +    +    +   ++W+ P     +A+ ++  ++ P + +  D
Sbjct: 186 IDYTGCGINPARSFGSSVITHNF---QDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTD 242
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.51
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.42
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.31
3d9s_A 266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.3
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.29
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.27
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.24
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.24
2o9g_A 234 Aquaporin Z; integral membrane protein, structural 99.23
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.22
3gd8_A 223 Aquaporin-4; proton exclusion, structural genomics 99.21
3iyz_A 340 Aquaporin-4; water transport, water channel, two-d 99.19
2w2e_A 279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.17
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.8e-56  Score=374.29  Aligned_cols=214  Identities=24%  Similarity=0.251  Sum_probs=184.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCchhHHHHHHHHHHHHHHHHHhcccCCcccChHHHHHHHHcCC
Q 026600            2 AGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGH-APSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGD   80 (236)
Q Consensus         2 ~~~r~~~aEfigT~~lv~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~i~~~g~iS~Gah~NPavTla~~~~g~   80 (236)
                      +++|++++||+||++|+++|+++++...+..+.+. ....++++||+++.  ..+++++++| |||+|||||+++++.|+
T Consensus         2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~--~~v~~~g~iS-GaHlNPAVTla~~~~g~   78 (223)
T 3gd8_A            2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIA--TMVQCFGHIS-GGHINPAVTVAMVCTRK   78 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHH--HHHHHHHHHH-CCCCSHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHH--HHHheecccc-cceEcHHHHHHHHHcCC
Confidence            57999999999999999999998774322111111 11267888888874  3489999999 99999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCC----C--CCCCCCcchHHHHHHHHHHHHHHHHHHHhhhccCCC-Ccc
Q 026600           81 FSNFLFTVGARIPAQVIGSITGVRFILDTFPQI----G--RGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPG-SFY  153 (236)
Q Consensus        81 ~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~----~--~~~~~~~~~~~~~~~E~~~T~~Lv~~il~~~~~~~~-~~~  153 (236)
                      +  +|+|++.|+++|++||++|+.++|.+++++    +  ..++++.+..++++.|+++|++|+++++.++|++++ ...
T Consensus        79 ~--~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~  156 (223)
T 3gd8_A           79 I--SIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTG  156 (223)
T ss_dssp             S--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCCCS
T ss_pred             C--CHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCccC
Confidence            9  999999999999999999999999999753    2  245667889999999999999999999999886543 235


Q ss_pred             chhhHhHHHHHHHHHHhcCCCCCCcchHhHHHHHHhcCCCCCCCcceehhhhhHHHHHHHHHHHHHhcCC
Q 026600          154 MKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRP  223 (236)
Q Consensus       154 ~~p~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~~~~~~~~~~~~~wvy~v~P~lGa~~a~~~y~~l~~~  223 (236)
                      ..|+.||+++...+..+++.||++||||||||||++.+   +|+|+||||++|++|+++++++|++++.|
T Consensus       157 ~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~---~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p  223 (223)
T 3gd8_A          157 SIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCP  223 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc---CCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence            78999999998888888889999999999999999987   79999999999999999999999999876
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 236
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 6e-09
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 2e-07
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 8e-07
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 4e-04
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 37/234 (15%), Positives = 81/234 (34%), Gaps = 11/234 (4%)

Query: 5   RLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSI---ISMFLFAFLGKV 61
           R VV++F+   ++++ S+   +  +  +              +S+   +S+   A     
Sbjct: 12  RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71

Query: 62  TKGGAYNPLTVLASGISGDF--SNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSL 119
             G   NP   L   +S        +  + A+    ++ +                  +L
Sbjct: 72  ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131

Query: 120 NVGIHHGA--LTEGLLTFAIVTISLGLA-RKIPGSFYMKTWISSVSKLALHILGSDMTGG 176
             G++ G     E + T  +V   L    R+              S    H+L  D TG 
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYTGC 191

Query: 177 CMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKD 230
            +NPA   G +    +    +   ++W+ P     +A+ ++  ++ P + +  D
Sbjct: 192 GINPARSFGSSVITHNF---QDHWIFWVGPFIGAALAVLIYDFILAPRSSDLTD 242
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query236
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.4
d1rc2a_ 231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.23
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.17
d1fx8a_ 254 Glycerol uptake facilitator protein GlpF {Escheric 99.15
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-53  Score=359.92  Aligned_cols=217  Identities=18%  Similarity=0.240  Sum_probs=187.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHHHHHHhcccCCcccChHHHHHHHHcCCC
Q 026600            2 AGIRLVVSDFILSFMWVWQSVLIKIFVYKVLGLGHAPSGEVFKCGLSIISMFLFAFLGKVTKGGAYNPLTVLASGISGDF   81 (236)
Q Consensus         2 ~~~r~~~aEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~g~iS~Gah~NPavTla~~~~g~~   81 (236)
                      ++||++++||+||++++++|+++++...   +.+.....++++||+++  +..++.++++| |||+|||||+++++.|++
T Consensus         3 s~~r~~laEf~GT~~lvf~g~gs~~~~~---~~~~~~~~ial~~G~~v--~~~i~~~g~iS-GaH~NPAVTla~~~~g~i   76 (234)
T d1ymga1           3 SFWRAICAEFFASLFYVFFGLGASLRWA---PGPLHVLQVALAFGLAL--ATLVQAVGHIS-GAHVNPAVTFAFLVGSQM   76 (234)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCSCC----CHHHHHHHHHHHHHHH--HHHHHHHTTTT-CCCCSHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccC---CCCcchHHHHHHHHHHH--HHHHHHHhccc-cCccCchhhHHHHhccCC
Confidence            6899999999999999999999765311   11111125677888877  44589999999 999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CCCCCCcchHHHHHHHHHHHHHHHHHHHhhhccCCC-Cccc
Q 026600           82 SNFLFTVGARIPAQVIGSITGVRFILDTFPQIG------RGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPG-SFYM  154 (236)
Q Consensus        82 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~~E~~~T~~Lv~~il~~~~~~~~-~~~~  154 (236)
                        +|++++.|+++|++||++|+++++.+++++.      ..+.++.+..++++.|++.|++|+++++.+.|++++ ....
T Consensus        77 --~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~  154 (234)
T d1ymga1          77 --SLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGS  154 (234)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCC
T ss_pred             --ChhheeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcc
Confidence              9999999999999999999999999997652      245567789999999999999999999999986543 3346


Q ss_pred             hhhHhHHHHHHHHHHhcCCCCCCcchHhHHHHHHhcCCCCCCCcceehhhhhHHHHHHHHHHHHHhcCCcccccc
Q 026600          155 KTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKK  229 (236)
Q Consensus       155 ~p~~iG~~v~~~~~~~~~~tG~~lNPAr~lg~~~~~~~~~~~~~~wvy~v~P~lGa~~a~~~y~~l~~~~~~~~~  229 (236)
                      .|+.||+.+.+..+..+++||+++||||||||+++++   .|+++|+||++|++|+++++++|++++.|+.|+.+
T Consensus       155 ~~l~ig~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~---~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~~~~  226 (234)
T d1ymga1         155 VALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR---NFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLKSVS  226 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT---CCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCCCHH
T ss_pred             eeEeehHHHHHHHHHhcccccccccchhhhhHHHhcc---CccCeeeeehHHHHHHHHHHHHHHHHHcCCCcchh
Confidence            7899999999999999999999999999999999987   79999999999999999999999999999887554
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure