Citrus Sinensis ID: 026632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHcccEEcccHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEEcccccccccccHHHHHHccccccccccccEEEEcccccEEEEcccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEEccccHHHHHHHHHHccccEcccccHHHHHHHcccccccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEEccccccccEEEEcccccccccccccccEccccEEEEEcccccccccccccEEEEEEcccccccccccHHHHHHHHcccccEEcccEEEEccccEEEEEccHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mvtmdqetageLDYVFLCVLPLFHVFGLAvitcgqlqkgsciILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKhglvkkfdlsslklvgsgaaplGKELMEECaknvpsatviqgygltetsgiatmensfagsrnigsagalaPGVEALIVSvdtqkplppnqlgeiwlrgpnmmrgyynneqatkltidkkgwvhtgdlgyfdgdgqLYVVDRIKELIKykgfqvtsnw
Flexible Loop (DISEMBL)
mvtmdqetAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVdtqkplppnqLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELikykgfqvtsnw
Low Complexity Region (SEG)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Disordered region (IsUnstruct)
**********ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV****
Disordered Region (DISOPRED)
********AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN*
Disordered Region (DISEMBL)
********AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Disordered Region (DISPRO)
**T*DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q9M0X9	544	4-coumarate--CoA ligase-l	yes	no	0.982	0.424	0.705	6e-96
Q0DV32	552	4-coumarate--CoA ligase-l	yes	no	0.978	0.416	0.607	2e-81
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.919	0.395	0.458	3e-55
Q84P23	562	4-coumarate--CoA ligase-l	no	no	0.919	0.384	0.479	8e-55
Q10S72	552	4-coumarate--CoA ligase-l	no	no	0.910	0.387	0.462	9e-55
Q9S725	556	4-coumarate--CoA ligase 2	no	no	0.931	0.393	0.468	4e-54
O24145	547	4-coumarate--CoA ligase 1	N/A	no	0.919	0.394	0.484	5e-54
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	0.931	0.398	0.457	8e-54
Q9S777	561	4-coumarate--CoA ligase 3	no	no	0.923	0.386	0.459	2e-53
Q6ZAC1	539	Probable 4-coumarate--CoA	no	no	0.931	0.406	0.459	3e-53

>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1

 Score =  350 bits (897), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 192/231 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY NN QATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct: 401 KGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2

 Score =  301 bits (771), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 141/232 (60%), Positives = 181/232 (78%), Gaps = 2/232 (0%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVT DQ+   E   VFLC LP+FH+FGL+VIT  QL +G+ II M++FD+   + A+++H
Sbjct: 228 MVTSDQDERREGPNVFLCFLPMFHIFGLSVITYAQLHRGNAIIAMSRFDINSLMEAVQRH 287

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH++ VPP+I+ALAKHG   K+DLSSLK +GSGAAPLGK++ME  AK  P + ++QGY
Sbjct: 288 RVTHLFCVPPVIIALAKHGKAGKYDLSSLKFIGSGAAPLGKDVMEVVAKKFPDSEIVQGY 347

Query: 121 GLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNM 179
           G+TET GI ++E    G +R  GS G L  GVEA IV + T K LPPNQ+GEI +RGPN+
Sbjct: 348 GMTETCGIISLEYPEKGQAREFGSTGTLVSGVEAKIVDIKTLKHLPPNQVGEICVRGPNV 407

Query: 180 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           M+GY+NN QAT+ TI K+GW+HTGDLGYFDG GQL+VVDR+KELIKYKGFQ+
Sbjct: 408 MQGYFNNVQATEFTI-KQGWLHTGDLGYFDGGGQLFVVDRLKELIKYKGFQI 458

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/218 (45%), Positives = 150/218 (68%), Gaps = 2/218 (0%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct: 234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query: 76  AKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                 +  K+DLSS+  V  G APL KE+ E  A+  P+  ++QGYGLTE++GI    +
Sbjct: 294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
           +   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+GY++NE+AT  T
Sbjct: 354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSST 413

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +D +GW+ TGDL Y D DG ++VVDR+KELIKYKG+QV
Sbjct: 414 LDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQV 451

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score =  213 bits (543), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/221 (47%), Positives = 149/221 (67%), Gaps = 5/221 (2%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct: 248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++QGYGLTE+SG A   
Sbjct: 307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAA-- 364

Query: 133 NSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
           ++F     +  GS G ++  +EA IV   T + LPP + GE+WLRGP +M+GY  NE+A+
Sbjct: 365 STFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKAS 424

Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             T+DK+GW+ TGDL YFD +  LY+VDR+KELIKYK +QV
Sbjct: 425 AETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQV 465

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score =  213 bits (542), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 100/216 (46%), Positives = 146/216 (67%), Gaps = 2/216 (0%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           FLC +P+FHV+GL     G L  G+ +++++K++L   LR+I  + VT++ +VPP+++A+
Sbjct: 246 FLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGVTYLPLVPPILVAM 305

Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF 135
             H   K   L  ++ V SG APLGKEL+E   +  P   ++QGYGLTE++ I    +S 
Sbjct: 306 VAHP--KPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGLTESTAIGASTDSA 363

Query: 136 AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID 195
             SR  G+AG L+P  EA IV  D+ + LP N+ GE+W+RGP +M+GY+ N +AT+ T+ 
Sbjct: 364 EESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKGYFKNAEATQSTLT 423

Query: 196 KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct: 424 PDGWLKTGDLCYIDEDGYLFVVDRLKELIKYKGYQV 459

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 146/222 (65%), Gaps = 3/222 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct: 240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + QGYG+TE   +  M 
Sbjct: 300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMS 359

Query: 133 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 189
             FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+GY N+  A
Sbjct: 360 LGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLA 419

Query: 190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           T  TIDK GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct: 420 TASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQV 461

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  211 bits (536), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/221 (48%), Positives = 150/221 (67%), Gaps = 5/221 (2%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +CVLPLFH++ L +++ CG L+ G+ I++M KFD+  FL  I+K++V+    VPP++L
Sbjct: 233 VLMCVLPLFHIYSLNSILLCG-LRVGAAILIMQKFDIAPFLELIQKYKVSIGPFVPPIVL 291

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           A+AK  +V  +DLSS++ V SGAAPLGKEL +      P+A + QGYG+TE   +  M  
Sbjct: 292 AIAKSPIVDSYDLSSVRTVMSGAAPLGKELEDAVRTKFPNAKLGQGYGMTEAGPVLAMCL 351

Query: 134 SFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
           +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY N+ +AT
Sbjct: 352 AFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIMKGYLNDPEAT 411

Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             TIDK+GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct: 412 TRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQV 452

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 147/221 (66%), Gaps = 2/221 (0%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct: 237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query: 73  LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++QGY LTE++G   
Sbjct: 297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGA 356

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
             NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +GY+ N++AT
Sbjct: 357 FTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEAT 416

Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             TI+ +GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct: 417 NETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQV 457

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9S777|4CL3_ARATH 4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1

 Score =  208 bits (530), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/220 (45%), Positives = 147/220 (66%), Gaps = 3/220 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct: 252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + QGYG+TE   + +M   
Sbjct: 312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLG 371

Query: 135 FAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
           FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+ Y N+ +AT 
Sbjct: 372 FAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATS 431

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TID++GW+HTGD+GY D D ++++VDR+KE+IK+KGFQV
Sbjct: 432 ATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQV 471

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6ZAC1|4CL5_ORYSJ Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1

 Score =  208 bits (529), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 151/224 (67%), Gaps = 5/224 (2%)

Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FHV+ L +++ CG ++ G+ I++M +FD    L+ +E+H VT   +VPP+
Sbjct: 222 DDVVLCVLPMFHVYSLHSILLCG-MRAGAAIVVMKRFDTVKMLQLVERHGVTIAPLVPPI 280

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           ++ +AK   + + DLSS+++V SGAAP+GKEL +     +P+A + QGYG+TE   + +M
Sbjct: 281 VVEMAKSDALDRHDLSSIRMVISGAAPMGKELQDIVHAKLPNAVLGQGYGMTEAGPVLSM 340

Query: 132 ENSFAGSRN---IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 188
             +FA        G+ G +    E  IV  DT   LP NQ GEI +RG  +M+GY NN +
Sbjct: 341 CMAFAKEPTPVKSGACGTVVRNAELKIVDPDTGLSLPRNQPGEICIRGKQIMKGYLNNPE 400

Query: 189 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 232
           AT+ TIDK GW+HTGD+G+ D D ++++VDR+KELIKYKGFQV 
Sbjct: 401 ATEKTIDKDGWLHTGDIGFVDDDDEIFIVDRLKELIKYKGFQVA 444

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
255565415	542	AMP dependent CoA ligase, putative [Rici	0.982	0.426	0.735	1e-100
380042366	543	acyl-activating enzyme 3 [Cannabis sativ	0.982	0.425	0.731	5e-99
224127622	543	4-coumarate-coa ligase [Populus trichoca	0.982	0.425	0.722	6e-98
224077516	543	4-coumarate-coa ligase [Populus trichoca	0.982	0.425	0.714	2e-96
373432591	540	4-coumarate--CoA ligase-like 7-like [Gly	0.982	0.427	0.709	4e-95
15234634	544	4-coumarate--CoA ligase-like 7 [Arabidop	0.982	0.424	0.705	3e-94
297809709	544	hypothetical protein ARALYDRAFT_490166 [	0.982	0.424	0.701	3e-94
312281669	543	unnamed protein product [Thellungiella h	0.982	0.425	0.692	5e-93
356539342	548	PREDICTED: 4-coumarate--CoA ligase-like	0.982	0.421	0.679	7e-93
449459112	543	PREDICTED: 4-coumarate--CoA ligase-like	0.982	0.425	0.714	3e-92

>gi|255565415|ref|XP_002523698.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223537002|gb|EEF38638.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 170/231 (73%), Positives = 197/231 (85%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQE AGEL  VFLC LP+FHVFGLAVI   QLQ G+ ++ M KFD E+ L+A+EK+
Sbjct: 219 MITMDQEIAGELHNVFLCFLPMFHVFGLAVIAYSQLQTGNAVVSMGKFDFELVLKAVEKY 278

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           R+TH+WVVPP+ILALAK  LVKK+DLSSL+ VGSGAAPL KELMEECAK +P A + QGY
Sbjct: 279 RITHLWVVPPVILALAKQSLVKKYDLSSLQHVGSGAAPLSKELMEECAKTIPHAAIAQGY 338

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET+GI ++EN   G R+ GSAG LA G+EA I+SVDT KPLPPNQLGEIW+RGPNMM
Sbjct: 339 GMTETTGIVSVENPRIGVRHSGSAGTLAAGIEAQIISVDTLKPLPPNQLGEIWVRGPNMM 398

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           RGY+NN QATK TIDKKGW+HTGDLGYFD DG+LYVVDRIKELIKYKGFQV
Sbjct: 399 RGYFNNPQATKQTIDKKGWLHTGDLGYFDEDGKLYVVDRIKELIKYKGFQV 449

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380042366|gb|AFD33347.1| acyl-activating enzyme 3 [Cannabis sativa]

 Score =  366 bits (939), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 169/231 (73%), Positives = 199/231 (86%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTM+Q+  GE+D VFLC LP+FHVFGLA+IT  QLQ+G+ +I MA+FDLE  L+ +EK+
Sbjct: 220 MVTMEQDLVGEMDNVFLCFLPMFHVFGLAIITYAQLQRGNTVISMARFDLEKMLKDVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+WVVPP+ILAL+K+ +VKKF+LSS+K +GSGAAPLGK+LMEEC+K VP   V QGY
Sbjct: 280 KVTHLWVVPPVILALSKNSMVKKFNLSSIKYIGSGAAPLGKDLMEECSKVVPYGIVAQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI +ME+   G RN GSAG LA GVEA IVSVDT KPLPPNQLGEIW++GPNMM
Sbjct: 340 GMTETCGIVSMEDIRGGKRNSGSAGMLASGVEAQIVSVDTLKPLPPNQLGEIWVKGPNMM 399

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY+NN QATKLTIDKKGWVHTGDLGYFD DG LYVVDRIKELIKYKGFQV
Sbjct: 400 QGYFNNPQATKLTIDKKGWVHTGDLGYFDEDGHLYVVDRIKELIKYKGFQV 450

Source: Cannabis sativa

Species: Cannabis sativa

Genus: Cannabis

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127622|ref|XP_002329323.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224127626|ref|XP_002329324.1| acyl:coa ligase [Populus trichocarpa] gi|222870777|gb|EEF07908.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222870778|gb|EEF07909.1| acyl:coa ligase [Populus trichocarpa]

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 167/231 (72%), Positives = 197/231 (85%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MV+MDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM LR IEK+
Sbjct: 220 MVSMDQVMAGEIHNVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ILAL+K  LVKK+DLSSL+ +GSGAAPLGK+LM+ECAKN+P  T+IQG+
Sbjct: 280 RVTHMWVVPPVILALSKQNLVKKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDTTIIQGF 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G R+ GSAG L  G+EA I+SV+T KPLPPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSLEDPRIGVRHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNMM 399

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           RGY+NN QATK TIDKKGWVHTGDLGYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 400 RGYFNNPQATKDTIDKKGWVHTGDLGYFDDDGQLFVVDRIKELIKYKGFQV 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077516|ref|XP_002305282.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222848246|gb|EEE85793.1| 4-coumarate-coa ligase [Populus trichocarpa]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 165/231 (71%), Positives = 196/231 (84%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ  AGE+  VFLC LP+FHVFGLAVIT  QLQ G+ ++ M KF+ EM L+ IEKH
Sbjct: 220 MVTMDQAMAGEMHDVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLKTIEKH 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP++LALAK  +VKK+D+SSL+ +GSGAAPLGK+LM+ECAKN+P   + QGY
Sbjct: 280 RVTDMWVVPPVVLALAKQDMVKKYDISSLRNIGSGAAPLGKDLMKECAKNLPDTIISQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+S  G R+ GSAG LA G+EA IVSV+T KPLPPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSVEDSRLGVRHSGSAGILAAGIEAQIVSVETLKPLPPNQLGEIWVRGPNMM 399

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           RGY+NN QATK T+DKKGWVHTGD+GYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 400 RGYFNNPQATKDTMDKKGWVHTGDVGYFDDDGQLFVVDRIKELIKYKGFQV 450

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|373432591|ref|NP_001243292.1| 4-coumarate--CoA ligase-like 7-like [Glycine max] gi|370316591|gb|AEX25890.1| 4-coumarate:CoA ligase [Glycine max]

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 164/231 (70%), Positives = 193/231 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+  D + AG L  VFLCVLP+FHVFGL VI+ GQLQ+GS ++ + KF+ E+ L+ IEK 
Sbjct: 217 MIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKF 276

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+WVVPP+ILALAKHGLV K+DLSSLK +GSGAAPLGKELM+ECAK  P A V QGY
Sbjct: 277 KVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQGY 336

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++EN+  G RN GS G L  G+EA +VSVDT KPLPP QLGEIW+RGPNMM
Sbjct: 337 GMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNMM 396

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY+NN QAT+LT+DKKGWVHTGDLGYFD DGQL+VVDRIKELIKYKGFQV
Sbjct: 397 QGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQV 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234634|ref|NP_192425.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana] gi|75311763|sp|Q9M0X9.1|4CLL7_ARATH RecName: Full=4-coumarate--CoA ligase-like 7; AltName: Full=4-coumarate--CoA ligase isoform 6; Short=At4CL6 gi|7267275|emb|CAB81058.1| 4-coumarate--CoA ligase-like protein [Arabidopsis thaliana] gi|20258834|gb|AAM13899.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|21689723|gb|AAM67483.1| putative 4-coumarate--CoA ligase [Arabidopsis thaliana] gi|29893227|gb|AAP03022.1| 4-coumarate-CoA ligase-like protein [Arabidopsis thaliana] gi|332657086|gb|AEE82486.1| 4-coumarate--CoA ligase-like 7 [Arabidopsis thaliana]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 163/231 (70%), Positives = 192/231 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY NN QATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct: 401 KGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809709|ref|XP_002872738.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata] gi|297318575|gb|EFH48997.1| hypothetical protein ARALYDRAFT_490166 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 162/231 (70%), Positives = 192/231 (83%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ ++ MAKF+LE+ L+ IEK+
Sbjct: 221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLTVITYSQLQRGNALVSMAKFELELVLKNIEKY 280

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct: 281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T    PPNQ GEIW+RGPNMM
Sbjct: 341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGNSQPPNQQGEIWVRGPNMM 400

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY NN QATK TIDKKGWVHTGDLGYF+ DG LYVVDR+KELIKYKGFQV
Sbjct: 401 KGYLNNPQATKETIDKKGWVHTGDLGYFNEDGNLYVVDRLKELIKYKGFQV 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281669|dbj|BAJ33700.1| unnamed protein product [Thellungiella halophila]

 Score =  346 bits (887), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 160/231 (69%), Positives = 191/231 (82%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           MVTMDQ+  GE   VFLC LP+FHVFGL VIT  QLQ+G+ +I MAKF+LE  L+ IEK+
Sbjct: 220 MVTMDQDLMGEYHAVFLCFLPMFHVFGLTVITYSQLQRGNAVISMAKFELETLLKNIEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP+ LAL+K  +VKK+DLSSLK +GSGAAPLGK+LMEEC +N+ +  ++QGY
Sbjct: 280 RVTQLWVVPPVFLALSKQSIVKKYDLSSLKYIGSGAAPLGKDLMEECGRNISNVVLMQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++E+   G RN GSAG LAPGVEA IVSV++ K  PPNQLGEIW+RGPNMM
Sbjct: 340 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVESGKSQPPNQLGEIWVRGPNMM 399

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY NN QATK TID+KGWVHTGDLGYF+ DG L+VVDRIKELIKYKGFQV
Sbjct: 400 KGYLNNPQATKETIDRKGWVHTGDLGYFNEDGNLFVVDRIKELIKYKGFQV 450

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539342|ref|XP_003538157.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Glycine max]

 Score =  345 bits (886), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 189/231 (81%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+ MD + AGE D V+LCVLP+FHVFGLAV+T   L++GS +++M +F+LE  L+AIEK 
Sbjct: 225 MIGMDDDLAGEQDDVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQ 284

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVT +WVVPP++L LAK  +V  +DLSSL+ +GSGAAPLGK+LMEEC +  P   + QGY
Sbjct: 285 RVTKLWVVPPILLGLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQGY 344

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET GI ++EN   G R+ GS G L  GVEA IVSVDTQKPLPP QLGEIW+RGPNMM
Sbjct: 345 GMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMM 404

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY+NN +AT+LTIDKKGWVHTGDLGYFD DGQLYVVDRIKELIKYKGFQV
Sbjct: 405 QGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQV 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459112|ref|XP_004147290.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus] gi|449528351|ref|XP_004171168.1| PREDICTED: 4-coumarate--CoA ligase-like 7-like [Cucumis sativus]

 Score =  343 bits (880), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 165/231 (71%), Positives = 189/231 (81%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           M+TMDQ   GE   VFL  LP+FHVFGLA IT  QLQKG+ ++ M KF+LE  L A+EK+
Sbjct: 220 MITMDQTFNGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTVVSMPKFNLEKALWAVEKY 279

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VT +WVVPP++LALAK  LVKK++LSS+K VGSGAAPLG+ELMEECA N+PSA VIQGY
Sbjct: 280 KVTDLWVVPPVVLALAKQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQGY 339

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET G+  +EN   G RN GSAG LA GVEA IVSVDT KPLPPNQ GEI +RGPNMM
Sbjct: 340 GMTETCGVVALENPAVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMM 399

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            GY+NN +ATK TIDK GWVHTGDLGYFD +GQLYVVDRIKELIKYKGFQV
Sbjct: 400 LGYFNNPEATKQTIDKHGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQV 450

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.982	0.424	0.705	3.7e-87
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.919	0.395	0.463	7.2e-52
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.919	0.384	0.479	1.2e-51
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.931	0.398	0.457	4e-51
TAIR|locus:2015003	561	4CL3 "4-coumarate:CoA ligase 3	0.923	0.386	0.459	1.7e-50
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.927	0.388	0.475	2.2e-50
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.931	0.393	0.468	3.6e-50
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.914	0.380	0.437	3.2e-49
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.914	0.379	0.445	2.9e-48
ASPGD|ASPL0000006875	562	AN5990 [Emericella nidulans (t	0.910	0.380	0.447	5.4e-47

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 163/231 (70%), Positives = 192/231 (83%)

Query:     1 MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
             MVTMDQ+  GE   VFLC LP+FHVFGLAVIT  QLQ+G+ ++ MA+F+LE+ L+ IEK 
Sbjct:   221 MVTMDQDLMGEYHGVFLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKF 280

Query:    61 RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
             RVTH+WVVPP+ LAL+K  +VKKFDLSSLK +GSGAAPLGK+LMEEC +N+P+  ++QGY
Sbjct:   281 RVTHLWVVPPVFLALSKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGY 340

Query:   121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
             G+TET GI ++E+   G RN GSAG LAPGVEA IVSV+T K  PPNQ GEIW+RGPNMM
Sbjct:   341 GMTETCGIVSVEDPRLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMM 400

Query:   181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             +GY NN QATK TIDKK WVHTGDLGYF+ DG LYVVDRIKELIKYKGFQV
Sbjct:   401 KGYLNNPQATKETIDKKSWVHTGDLGYFNEDGNLYVVDRIKELIKYKGFQV 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 101/218 (46%), Positives = 151/218 (69%)

Query:    16 FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
             F+C +P+FH++GLA    G L  GS II+++KF++   + AI K++ T + +VPP+++A+
Sbjct:   234 FICTVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAM 293

Query:    76 AKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   +K K+DLSS+  V  G APL KE+ E  A+  P+  ++QGYGLTE++GI    +
Sbjct:   294 VNGADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTD 353

Query:   134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
             +   SR  G+AG L+  +E  IV   T + L P Q GE+WL+GP++M+GY++NE+AT  T
Sbjct:   354 TVEESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSST 413

Query:   194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             +D +GW+ TGDL Y D DG ++VVDR+KELIKYKG+QV
Sbjct:   414 LDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQV 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 106/221 (47%), Positives = 149/221 (67%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V L  LPLFHVFG  ++    +  G  ++L+ +F+LE   +A+EK++VT + V PPLI
Sbjct:   248 DRVGLFSLPLFHVFGFMMMIRA-ISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLI 306

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             +AL K  L KK+DL SL+ +G G APLGK++ E   +  P   ++QGYGLTE+SG A   
Sbjct:   307 VALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAA-- 364

Query:   133 NSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
             ++F     +  GS G ++  +EA IV   T + LPP + GE+WLRGP +M+GY  NE+A+
Sbjct:   365 STFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKGYVGNEKAS 424

Query:   191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
               T+DK+GW+ TGDL YFD +  LY+VDR+KELIKYK +QV
Sbjct:   425 AETVDKEGWLKTGDLCYFDSEDFLYIVDRLKELIKYKAYQV 465

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 101/221 (45%), Positives = 147/221 (66%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D +F+C +P+FH +GL     G +  GS ++++ +F L   + A+EKHR T + + PP++
Sbjct:   237 DDIFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVL 296

Query:    73 LALAKHG-LVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
             +A+     L+K K+DLSSLK V  G APL KE+ E   +  P+  ++QGY LTE++G   
Sbjct:   297 VAMINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGA 356

Query:   131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
               NS   SR  G+AG L   VEA IV  +T + +  NQ GE+WL+GP++ +GY+ N++AT
Sbjct:   357 FTNSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYFKNQEAT 416

Query:   191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
               TI+ +GW+ TGDL Y D DG L+VVDR+KELIKYKG+QV
Sbjct:   417 NETINLEGWLKTGDLCYIDEDGFLFVVDRLKELIKYKGYQV 457

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 101/220 (45%), Positives = 147/220 (66%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V LCVLPLFH++ L  +    L+ G+ ++LM KF++   L  I++HRVT   +VPPL++A
Sbjct:   252 VILCVLPLFHIYSLNSVLLNSLRSGATVLLMHKFEIGALLDLIQRHRVTIAALVPPLVIA 311

Query:    75 LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
             LAK+  V  +DLSS++ V SGAAPLGKEL +   + +P A + QGYG+TE   + +M   
Sbjct:   312 LAKNPTVNSYDLSSVRFVLSGAAPLGKELQDSLRRRLPQAILGQGYGMTEAGPVLSMSLG 371

Query:   135 FAGS---RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
             FA        GS G +    E  +V ++T+  L  NQ GEI +RG  +M+ Y N+ +AT 
Sbjct:   372 FAKEPIPTKSGSCGTVVRNAELKVVHLETRLSLGYNQPGEICIRGQQIMKEYLNDPEATS 431

Query:   192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              TID++GW+HTGD+GY D D ++++VDR+KE+IK+KGFQV
Sbjct:   432 ATIDEEGWLHTGDIGYVDEDDEIFIVDRLKEVIKFKGFQV 471

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 106/223 (47%), Positives = 147/223 (65%)

Query:    13 DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
             D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct:   247 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 305

Query:    72 ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
             +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M
Sbjct:   306 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 365

Query:   132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 188
                FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+GY NN  
Sbjct:   366 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPA 425

Query:   189 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             AT  TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct:   426 ATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 468

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 104/222 (46%), Positives = 146/222 (65%)

Query:    13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             D V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   VVPP++
Sbjct:   240 DDVILCVLPMFHIYALNSIMLCSLRVGATILIMPKFEITLLLEQIQRCKVTVAMVVPPIV 299

Query:    73 LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             LA+AK    +K+DLSS+++V SGAAPLGKEL +  +   P+A + QGYG+TE   +  M 
Sbjct:   300 LAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMTEAGPVLAMS 359

Query:   133 NSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 189
               FA        G+ G +    E  I+  DT   LP N+ GEI +RG  +M+GY N+  A
Sbjct:   360 LGFAKEPFPVKSGACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQIMKGYLNDPLA 419

Query:   190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             T  TIDK GW+HTGD+G+ D D +L++VDR+KELIKYKGFQV
Sbjct:   420 TASTIDKDGWLHTGDVGFIDDDDELFIVDRLKELIKYKGFQV 461

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 95/217 (43%), Positives = 144/217 (66%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             +C +P+ H+FG      G +  G  I+++ KFD+   L A+E HR +++ +VPP+++A+ 
Sbjct:   256 ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLSLVPPIVVAMV 315

Query:    77 K--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
                + +  K+DLSSL  V +G APL +E+ E+  +N P   ++QGYGLTE++ IA    +
Sbjct:   316 NGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTESTAIAASMFN 375

Query:   135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
                ++  G++G LAP VE  IV  DT + L  NQ GE+W+R P +M+GY+ N++AT  TI
Sbjct:   376 KEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYFKNKEATASTI 435

Query:   195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             D +GW+ TGDL Y DGDG ++VVDR+KELIK  G+QV
Sbjct:   436 DSEGWLKTGDLCYIDGDGFVFVVDRLKELIKCNGYQV 472

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 98/220 (44%), Positives = 146/220 (66%)

Query:    15 VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             V+L  LPL H++GL++   G L  GS I++M +FD    +  IE+ ++TH  VVPP+++A
Sbjct:   252 VYLAALPLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMA 311

Query:    75 LAKH--GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L K   G+  +    SLK V SGAAPL ++ +E+  + +P   +IQGYG+TE++ + T  
Sbjct:   312 LTKKAKGVCGEV-FKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRG 370

Query:   133 -NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
              NS   SR   S G LAP ++A +V   +   LPP   GE+W++GP +M+GY NN +AT+
Sbjct:   371 FNSEKLSR-YSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKGYLNNPKATQ 429

Query:   192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             ++I +  W+ TGD+ YFD DG L++VDRIKE+IKYKGFQ+
Sbjct:   430 MSIVEDSWLRTGDIAYFDEDGYLFIVDRIKEIIKYKGFQI 469

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

ASPGD|ASPL0000006875 AN5990 [Emericella nidulans (taxid:162425)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 98/219 (44%), Positives = 143/219 (65%)

Query:    17 LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
             L  LP FH++GL  +    + KG  + +MAKFDLE + + ++ +R+T  +VVPP++L L 
Sbjct:   236 LAFLPFFHIYGLTCLVHQTIYKGYELFVMAKFDLEKWCQHVQNYRITFSYVVPPVVLLLG 295

Query:    77 KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA 136
             KH +V+K+DLSSL+++ SGAAPL +EL+E    N     + QGYGL+ETS     +    
Sbjct:   296 KHPIVEKYDLSSLRMMNSGAAPLTQELVE-AVYNRLHIGIKQGYGLSETSPTTHTQPWGE 354

Query:   137 GSRNIGSAGALAPGVEALIVSV--DTQKP--LPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                ++GS G L P +EA  +++  D  +P  +P  ++GE++LRGPN+ +GY+NN  AT  
Sbjct:   355 WRESVGSVGKLLPNMEAKYMTMPEDGSEPTEVPTGEVGELYLRGPNVFQGYHNNPAATAD 414

Query:   193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             +I   GW  TGD+GY D  G  Y+ DR+KELIKYKGFQV
Sbjct:   415 SISPDGWFRTGDVGYQDSKGNFYITDRVKELIKYKGFQV 453

GO:0006631 "fatty acid metabolic process" evidence=RCA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=RCA

GO:0005575 "cellular_component" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0X9	4CLL7_ARATH	6, ., 2, ., 1, ., -	0.7056	0.9829	0.4246	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-127
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	2e-97
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	4e-81
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	4e-77
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-73
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-73
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-72
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	3e-69
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	4e-68
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	8e-66
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-60
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-59
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-58
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	9e-58
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	8e-56
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	9e-50
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	5e-49
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	4e-46
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-45
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-45
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	9e-44
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-43
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-43
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	5e-42
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	1e-41
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	3e-40
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-39
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	5e-39
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	5e-39
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-38
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	9e-38
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	9e-37
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-35
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	1e-35
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-35
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	3e-35
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	3e-35
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-35
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-34
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	1e-33
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	2e-33
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	3e-33
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	3e-33
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	8e-33
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	1e-32
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-32
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	5e-32
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	8e-32
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-31
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	2e-29
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	2e-29
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	3e-29
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	4e-29
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	7e-29
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	1e-28
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-28
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	3e-28
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	6e-28
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	7e-28
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-27
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	4e-27
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	5e-27
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	6e-27
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-26
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	2e-25
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-24
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	2e-24
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-24
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	6e-24
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	1e-23
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-23
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	3e-23
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	4e-23
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	6e-23
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	7e-23
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	2e-22
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	4e-22
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	5e-22
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	8e-22
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	9e-22
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	1e-21
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-21
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	6e-21
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-20
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	3e-20
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	9e-20
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	9e-20
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	2e-19
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	4e-19
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	6e-19
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	7e-19
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	8e-19
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-18
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-18
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-17
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-17
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-17
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-17
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	5e-17
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	1e-16
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	3e-16
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	5e-16
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	5e-16
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	6e-16
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	8e-16
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	1e-15
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	1e-15
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-15
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	2e-15
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	6e-15
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	2e-14
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	5e-14
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	6e-14
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	7e-14
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	8e-14
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	9e-14
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-13
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-13
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	3e-13
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-13
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	4e-13
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	5e-13
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	5e-13
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	6e-13
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	2e-12
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	2e-12
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	3e-12
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-12
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	1e-11
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	4e-11
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	6e-11
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-10
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	1e-10
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-10
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-10
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	5e-10
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	6e-10
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	6e-10
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	2e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-09
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-09
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	5e-09
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	5e-09
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	8e-09
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	2e-08
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	4e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-07
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	3e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	6e-07
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	7e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-06
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	2e-06
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	2e-06
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	2e-06
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	5e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	7e-06
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	2e-05
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	3e-05
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-05
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	4e-05
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	2e-04
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	8e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
pfam10978	175	pfam10978, DUF2785, Protein of unknown function (D	0.002

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  369 bits (949), Expect = e-127
 Identities = 128/231 (55%), Positives = 164/231 (70%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            +   +    + + V LCVLP+FH++GL VI    L+ G+ +++M +FDLE FL AIEK+
Sbjct: 189 QLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKY 248

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VTH+ VVPP++LAL KH +V K+DLSSLK +GSGAAPLGKEL E      P   + QGY
Sbjct: 249 KVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVELGQGY 308

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TE+S + TM          GS G L P VEA IV  +T + LPPNQ GE+W+RGP +M
Sbjct: 309 GMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVM 368

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY NN +AT  TIDK GW+HTGDLGYFD DG L++VDR+KELIKYKGFQV
Sbjct: 369 KGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQV 419

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  292 bits (749), Expect = 2e-97
 Identities = 116/231 (50%), Positives = 152/231 (65%), Gaps = 3/231 (1%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
           +    +      + V L  LP +H +GL   T   L  G+ +I+M KFD E FL+ IEK+
Sbjct: 178 VQDTLKGNPDSSNDVVLTFLPFYHAYGLT-TTLASLLCGATVIIMPKFDSETFLKLIEKY 236

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           +VT +++VPP+ +ALAK  LV K+DLSSL+++ SGAAPL KEL EE  K  P+ T+ QGY
Sbjct: 237 KVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGY 296

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET    T+          GS G L P VEA IV  D  K L PN+ GE+ ++GP +M
Sbjct: 297 GMTETGPATTLTPPGDEKP--GSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIM 354

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +GY NN +ATK TID+ GW+HTGD+GYFD DG  Y+VDR KELIKYKG+QV
Sbjct: 355 KGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQV 405

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  251 bits (644), Expect = 4e-81
 Identities = 111/223 (49%), Positives = 154/223 (69%), Gaps = 5/223 (2%)

Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +V+ CG L+ G+ I++M KF++   L  I++H+VT    VPP+
Sbjct: 224 DDVILCVLPMFHIYSLNSVLLCG-LRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI 282

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +LA+AK  +V+K+DLSS+++V SGAAPLGKEL +     +P+A + QGYG+TE   +  M
Sbjct: 283 VLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAM 342

Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 188
             +FA        GS G +    E  IV  +T   LP NQ GEI +RGP +M+GY N+ +
Sbjct: 343 CLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPE 402

Query: 189 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           AT  TIDK GW+HTGD+GY D D +L++VDR+KELIKYKGFQV
Sbjct: 403 ATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQV 445

Length = 537

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  235 bits (603), Expect = 4e-77
 Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 8/221 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  +PLFHVFGL +     L  G+ ++LM KFD    LR IE+ R+T +  VP + +A
Sbjct: 45  RTLVPVPLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIA 104

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H    KFDLSSL+   SG AP+  EL+    +  P A +  GYG+TETSG+ T    
Sbjct: 105 LLEHPDFDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ--- 161

Query: 135 FAGSRN----IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
            +G        G+ G   PGVE  IV  D    +PP ++GEI +RG ++M+GYYN+ +AT
Sbjct: 162 TSGDDPYEDRPGTVGRPLPGVEVKIVDPDGG-EVPPGEVGEICVRGYSVMKGYYNDPEAT 220

Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              ID  GW+HTGDLGY D DG L +V RIK++I   G  +
Sbjct: 221 AEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENI 261

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  230 bits (588), Expect = 2e-73
 Identities = 92/217 (42%), Positives = 125/217 (57%), Gaps = 4/217 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            FL  LPLFH+FGL V     L+ G+  +L+  F     L+ I+++R T    VP L  A
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPTLYNA 229

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L  H   KK+D SSL+L  SG APL  E+ E   +    A +++GYGLTETS + T+ N 
Sbjct: 230 LLNHPEFKKYDFSSLRLCISGGAPLPVEVAER-FEEKTGAPLVEGYGLTETSPVTTV-NP 287

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             G R  GS G   PG E  IV  +    LPP ++GE+ +RGP +M+GY+N  + T   +
Sbjct: 288 LDGERKPGSIGLPLPGTEVKIVDDEGN-ELPPGEVGELVVRGPQVMKGYWNRPEETAEVL 346

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              GW+ TGD+GY D DG  Y+VDR K++I   GF V
Sbjct: 347 T-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNV 382

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  232 bits (592), Expect = 3e-73
 Identities = 99/220 (45%), Positives = 143/220 (65%), Gaps = 1/220 (0%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V+L  LP+FH++GL++   G L  GS I++M +FD    ++ I++ +VTH  VVPP++
Sbjct: 244 DNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL 303

Query: 73  LALAKHGL-VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +AL K    V    L SLK V  GAAPL  + +++  + +P    IQGYG+TE++ + T 
Sbjct: 304 MALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTR 363

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
             +        S G LAP ++A +V   T   LPP   GE+W++GP +M+GY NN +AT+
Sbjct: 364 GFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQ 423

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TIDK GW+ TGD+ YFD DG LY+VDR+KE+IKYKGFQ+
Sbjct: 424 STIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQI 463

Length = 560

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  223 bits (572), Expect = 1e-72
 Identities = 92/231 (39%), Positives = 127/231 (54%), Gaps = 4/231 (1%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH 60
            V            V+L   PL+H  G   +    L  G  ++LM KFD E  L  IE+H
Sbjct: 30  AVNALAGVDLSPGDVYLLAAPLYHAAGGLFLLPA-LAAGGTVVLMPKFDPEAVLDLIERH 88

Query: 61  RVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGY 120
           RVTH ++VP +   L +     ++DLSSL+L+  GAAP+  EL     +       +QGY
Sbjct: 89  RVTHTFLVPTMFQRLLRLPDFARYDLSSLRLIIYGAAPMPAELKRAMIE-WFGPVFVQGY 147

Query: 121 GLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           G+TET    T+ +     R +GS G   PGVE  IV  D  + LPP ++GEI +RGP +M
Sbjct: 148 GMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDEDG-RELPPGEVGEIVVRGPAVM 206

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            GY+N  +AT   + + GW+HTGDLGY D DG LY+VDR K++I   G  +
Sbjct: 207 AGYWNRPEATAEAL-RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENI 256

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  221 bits (564), Expect = 3e-69
 Identities = 96/218 (44%), Positives = 126/218 (57%), Gaps = 4/218 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V L  LPLFH+FGL V     L  G  ++L+    FD E  L  IEK++VT +  VP  +
Sbjct: 216 VVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFL 275

Query: 73  LALAKHGLVKKFDLSS-LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
             L  +      DLSS L+LV SG APL  EL+E   +      +++GYGLTETS + T+
Sbjct: 276 RELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTI 335

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
                     GS G   PGVE  IV  D  + LP  ++GEIW+RGPN+M+GY+N  +AT 
Sbjct: 336 NPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATA 394

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 229
              D+ GW+ TGDLGY D DG LY+V R+K+LI   G 
Sbjct: 395 EAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGE 432

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  214 bits (548), Expect = 4e-68
 Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL--EMFLRAIEKHRVTHIWVVPPLI 72
             L +LPL     +  I    L  G  ++L+ KF L     L  IEK++VT ++ VP L+
Sbjct: 174 RVLLLLPLHFDGSVWEIFGP-LLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLL 232

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L K    KK+DLSSL+LV SG  PL  EL+    +      ++ GYG TET+ +AT  
Sbjct: 233 RLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATAN 292

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                    GS G   PGVE  ++  + + P+PP ++GE+ +RGP + RGY N+ + T  
Sbjct: 293 LPGDPEVKPGSIGRPLPGVEVKVLDEEGE-PVPPGEVGELCIRGPGVARGYLNDPELTAE 351

Query: 193 TIDKKGWV--HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              + GW    TGDLG +D DG L ++ R  + +K +G ++
Sbjct: 352 RFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRGERI 392

Length = 412

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  206 bits (527), Expect = 8e-66
 Identities = 94/215 (43%), Positives = 127/215 (59%), Gaps = 4/215 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLIL 73
           V L VLPLFHV G      G L  G  ++L   F     FL  IE++RVT ++ VP L  
Sbjct: 43  VLLSVLPLFHVVGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYD 102

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           ALAK    + +DLSSL+L+ SG  PL  EL+E   +  P A +++GYGLTETS + +  N
Sbjct: 103 ALAKAAEDRGYDLSSLRLLISGGEPLSPELLER-FEERPGAPILEGYGLTETSVVTST-N 160

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
             +  +  G+ G   PGVE  +V  +  KPLPP ++GE+ +RGP +M+GY+NN   T   
Sbjct: 161 PDSELKKPGTVGRPVPGVEVRVVDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTAA 219

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
             + GW  TGDLGY D +G LY+  R K+LIK  G
Sbjct: 220 ATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGG 254

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  197 bits (503), Expect = 3e-60
 Identities = 88/220 (40%), Positives = 122/220 (55%), Gaps = 10/220 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L ++P+FHV    +     L  G+  ++  +FD E  L  IE  RVT  + VP +   
Sbjct: 210 VYLVIVPMFHVHAWGLPYLA-LMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQM 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM--- 131
           L K       D SSL+LV  G A L   L+ E  +      ++QGYG+TETS + ++   
Sbjct: 269 LLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKE-KFGIDLVQGYGMTETSPVVSVLPP 327

Query: 132 -ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMMRGYYNNEQ 188
            +          SAG   PGVEA IV  D    LPP+  ++GEI +RGP +M+GY+N  +
Sbjct: 328 EDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPE 386

Query: 189 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
           AT  TID  GW+HTGD+GY D DG LY+ DRIK++I   G
Sbjct: 387 ATAETID-GGWLHTGDVGYIDEDGYLYITDRIKDVIISGG 425

Length = 521

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  196 bits (499), Expect = 1e-59
 Identities = 94/220 (42%), Positives = 134/220 (60%), Gaps = 5/220 (2%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L ++P FH++G+  I C  L+    +++M++F+L  FL A+    V+   +VPP+IL L 
Sbjct: 231 LGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLV 290

Query: 77  KHGLVKKFDLSSLKL--VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           K+ +V++FDLS LKL  + + AAPL  EL+       P   V + YGLTE S I      
Sbjct: 291 KNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGD 350

Query: 135 FAGSRNIG---SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
                 I    S G + P +E   +  DT + LP N  GE+ +R   +M+GYYNN++ T 
Sbjct: 351 PEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETD 410

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TID+ GW+HTGD+GY D DG +++VDRIKELIKYKGFQV
Sbjct: 411 RTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQV 450

Length = 546

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  191 bits (488), Expect = 3e-58
 Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 8/219 (3%)

Query: 17  LCVLPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L   P FHVFG    V     L +G+ I+ +  FD +   R IE  R+T +   P +  +
Sbjct: 211 LAANPFFHVFGYKAGVNAP--LMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNS 268

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H      DLSSL+L  +GAA +   L+E     +    V+ GYGL+E SG+ T  N 
Sbjct: 269 LLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTF-NR 327

Query: 135 FAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
               R    G+ G    GVE  IV+   +  +P  ++GE+ +RGPN+M+GYY++ +AT  
Sbjct: 328 LDDDRKTVAGTIGTAIAGVENKIVNELGE-EVPVGEVGELLVRGPNVMKGYYDDPEATAA 386

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            ID  GW+HTGDLG  D +G LY+VDR K++    GF V
Sbjct: 387 AIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNV 425

Length = 513

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  188 bits (480), Expect = 9e-58
 Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 12/223 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFHV G+       +  G+ ++L+ ++D E   RAIE++RVTH   +  +++ 
Sbjct: 127 VLLAFLPLFHVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVD 186

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATM 131
           L  H     +DLSSLK+VG G A L   + E         T     +GYGLTET      
Sbjct: 187 LLAHPRFADYDLSSLKVVGGGGAALPPAVAERLKA----LTGLLYEEGYGLTETHTCTHF 242

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
                        G    G +A ++  +T + LPP + GEI +RGP + +GY+N  +AT 
Sbjct: 243 NPPDRPKP--QCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATA 300

Query: 192 ---LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              + +D K +  TGDLGY D +G  + +DR+K +I   G++V
Sbjct: 301 ESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKV 343

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  180 bits (460), Expect = 8e-56
 Identities = 80/212 (37%), Positives = 105/212 (49%), Gaps = 9/212 (4%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+PLFH+ GL V     L  G  ++   KF    F   I K+RVT    VP +   L 
Sbjct: 47  LNVMPLFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILL 106

Query: 77  KHGLVKKFD-LSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATMEN 133
           K            L+ + S +APL   +++   K   VP   V++ YG+TE +       
Sbjct: 107 KTAKPNPGKPPPRLRFIRSASAPLPPAVLDRLEKRFGVP---VLEAYGMTEAAHQIASNP 163

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
                R  GS G    GVE  I+  D + PLPP Q GEI +RGPN+  GY NN +A +  
Sbjct: 164 LPPLVRKPGSVG-RPAGVEVAILDDDGR-PLPPGQEGEIVIRGPNVTAGYLNNPEANR-E 220

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
             + GW  TGDLGY D DG L++  RIKELI 
Sbjct: 221 AFRDGWFRTGDLGYLDEDGYLFLTGRIKELIN 252

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  170 bits (431), Expect = 9e-50
 Identities = 90/221 (40%), Positives = 139/221 (62%), Gaps = 3/221 (1%)

Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           E + V L VLP FHV+G+  +    + +G  ++L+ KFD++M   AI+KH+VT     P 
Sbjct: 247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPT 306

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           + +AL    L+K++D+SS++   SG+APL  E+ E+  + V    +++GYGLTE+S + T
Sbjct: 307 IYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEK-FETVTGGKLVEGYGLTESSPV-T 364

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
             N     R  GS G   P  EA+I+S++T + LPP ++GEI ++GP +M+GY+N  + T
Sbjct: 365 HSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEET 424

Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              + + GW+HTGD+GY D DG  YV DR K++I   GF V
Sbjct: 425 AAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNV 464

Length = 563

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  166 bits (422), Expect = 5e-49
 Identities = 81/228 (35%), Positives = 112/228 (49%), Gaps = 33/228 (14%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
               L  LPL HVF   +     L  G+ +        E  L  + + R T  + VP + 
Sbjct: 129 GDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVW 186

Query: 72  ------ILA-LAKHGLVKK--FD----LSSLKLVGSGAAPLGKELMEECAK-NVPSATVI 117
                 I A +A  G +K+  F        L+   SG APL  E++E      +P   ++
Sbjct: 187 EKIYAGIEAKVAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRALGIP---IL 243

Query: 118 QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
           +GYGLTETSG+AT+  +  G   IG+ G   PGVE  I              GEI +RGP
Sbjct: 244 EGYGLTETSGVATV--NRPGDIRIGTVGKPLPGVEVRIAED-----------GEILVRGP 290

Query: 178 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
           N+M+GYY N +AT   +D+ GW+HTGD+G  D DG L + DR K+LI 
Sbjct: 291 NVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIV 338

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  157 bits (400), Expect = 4e-46
 Identities = 84/212 (39%), Positives = 109/212 (51%), Gaps = 23/212 (10%)

Query: 17  LCVLPLFHVFGLAVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LILA 74
           L  LPLFHV GLA++     L  G  ++L  KFD E    A+E H VTHI +VP  L   
Sbjct: 122 LLSLPLFHVSGLAIVMRS--LLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRL 179

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTET-SGIATME 132
           L   G      LSSL+ V  G AP+   L+E+   + +P   +   YG+TET S +AT++
Sbjct: 180 LESLG---ARWLSSLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVATLK 233

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                   +GS G   PG E  IV           Q GEI +RGP++  GY      T  
Sbjct: 234 PDDF-LAKLGSVGKPLPGRELRIV---------NPQDGEILVRGPSLFLGYLPQGGLTPP 283

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
             D+ GW HTGDLGY D +G LYV+ R  +LI
Sbjct: 284 L-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI 314

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  157 bits (399), Expect = 2e-45
 Identities = 82/217 (37%), Positives = 120/217 (55%), Gaps = 25/217 (11%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  +P+FH+ GL+ I    +  G  ++L+ KFD E   + ++   VT I VV  ++    
Sbjct: 186 LAAVPIFHISGLS-ILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTML---- 240

Query: 77  KHGLVKKFDL----SSLK--LVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTET-SGI 128
              L+++       SS +  L+G G AP  K L+E+C  K +P   V Q YG+TET S I
Sbjct: 241 -QRLLERLGEGTYPSSFRCMLLGGGPAP--KPLLEQCKEKGIP---VYQSYGMTETASQI 294

Query: 129 ATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 187
            T+    A ++ +GSAG  L P  E  I        +PP + GEI ++GPN+ +GY N E
Sbjct: 295 VTLSPEDALTK-LGSAGKPLFP-CELKIE--KDGVVVPPFEEGEIVVKGPNVTKGYLNRE 350

Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
            AT+ T  + GW  TGD+GY D +G LYV+DR  +LI
Sbjct: 351 DATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLI 386

Length = 483

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  158 bits (401), Expect = 2e-45
 Identities = 82/242 (33%), Positives = 120/242 (49%), Gaps = 50/242 (20%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP--LI 72
           V L VLPLFHV G+       +  G+ ++LM ++D E   R IE++RVTH W   P  ++
Sbjct: 233 VVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTH-WTNIPTMVV 291

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPL----GKELMEECAKNVPSATVIQGYGLTETS-- 126
             LA  GL  + DLSSL+ +G G A +     + L E           ++GYGLTET   
Sbjct: 292 DFLASPGL-AERDLSSLRYIGGGGAAMPEAVAERLKELTG-----LDYVEGYGLTETMAQ 345

Query: 127 --------------GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI 172
                         GI T                   GV+A ++  +T + LPP ++GEI
Sbjct: 346 THSNPPDRPKLQCLGIPTF------------------GVDARVIDPETLEELPPGEVGEI 387

Query: 173 WLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 229
            + GP + +GY+N  +AT    + ID K +  TGDLG  D +G  ++ DR+K +I   GF
Sbjct: 388 VVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGF 447

Query: 230 QV 231
           +V
Sbjct: 448 KV 449

Length = 546

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  153 bits (389), Expect = 9e-44
 Identities = 88/228 (38%), Positives = 130/228 (57%), Gaps = 5/228 (2%)

Query: 5   DQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            + T G+++ V +CVLPLFH++ L VI    L++G  I L  +FD+    R IE+ R T 
Sbjct: 231 SRATRGDVERV-ICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATV 289

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124
              VP + +ALA    ++K DLSSL  +GSG APL  E+     +      +  G+G+TE
Sbjct: 290 FPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTE 348

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRGY 183
           T    T  +   G    GS G + PG+E  +VS+ D  K LPP ++GE+ +RGPN+ RGY
Sbjct: 349 TCSPGT-GHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGY 407

Query: 184 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +N  + +        ++ TGD+GY D DG  ++VDR K++I   GF V
Sbjct: 408 WNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNV 454

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  149 bits (379), Expect = 1e-43
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 9/225 (4%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPL 71
           D   L VLP    +GL+ +     + G  ++L ++F      L+ + K R+T    VP  
Sbjct: 43  DDRILAVLPFSFDYGLSQLLT-AFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTT 101

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              L +   + + D  SL+ + +    L  + + +  +  P A +   YGLTE      +
Sbjct: 102 WAQLLRLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYL 161

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
                  R   S G   P VE  +V  +      P ++GE+  RG N+M+GY+N+ +AT 
Sbjct: 162 PPEELDRR-PDSIGKAIPNVELWVVD-EDGNRCAPGEVGELVHRGANVMKGYWNDPEATA 219

Query: 192 -----LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                  +  +  ++TGDL   D +G LY V R  ++IK +G++V
Sbjct: 220 ERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRV 264

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  152 bits (386), Expect = 1e-43
 Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 3/220 (1%)

Query: 15  VFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L VLP  H F L+     G L  G  ++L      ++    IE+ +VTH  +VP L+ 
Sbjct: 182 VYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLN 241

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
              +     + DLSSL+++  G APL  EL     +      + Q +G+ E     T  +
Sbjct: 242 LWLEAAEWDQADLSSLRVIQVGGAPLSPELARR-VEERLGCPLQQVFGMAEGLVNYTRLD 300

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
                        ++P  E  IV    + P+PP ++GE+  RGP  +RGYY   +     
Sbjct: 301 DPPDVIMRTQGRPISPADEIRIVDDQGE-PVPPGEVGELLTRGPYTIRGYYRAPEHNARA 359

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
               G+  TGDL   D DG   VV RIK+ I   G +++ 
Sbjct: 360 FTDDGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISP 399

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  150 bits (380), Expect = 5e-42
 Identities = 72/261 (27%), Positives = 100/261 (38%), Gaps = 69/261 (26%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L  LPL H+F  A      L     + ++ K D    L  +++ R T +  VP +   
Sbjct: 235 RVLSFLPLAHIFERAFEGGLAL--YGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEK 292

Query: 72  ------------------ILALAKHGLVKKFDLS-------------------------- 87
                             +   A     KK   +                          
Sbjct: 293 VYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG 352

Query: 88  -SLKLVGSGAAPLGKELMEECAKNVPSA--TVIQGYGLTETSGIATMENSFAGSRNIGSA 144
             ++   SG APL  EL         S    +++GYGLTETS + ++ N       +G+ 
Sbjct: 353 GRIRYALSGGAPLSPEL----LHFFRSLGIPILEGYGLTETSAVVSV-NPP-DRFVLGTV 406

Query: 145 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGD 204
           G   PG+E  I              GEI +RGPN+M+GYY N +AT     + GW  TGD
Sbjct: 407 GKPLPGIEVKIADD-----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGD 455

Query: 205 LGYFDGDGQLYVVDRIKELIK 225
           LG  D DG L +  R KELIK
Sbjct: 456 LGELDEDGYLVITGRKKELIK 476

Length = 613

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  146 bits (370), Expect = 1e-41
 Identities = 73/221 (33%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPL HV GL       L  G+ +  + +FD +         R+T    VP +   
Sbjct: 131 VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR 190

Query: 75  LAKH---GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           L +H            +L+L  SG+A L   ++E   +     T+++ YG+TET G+A  
Sbjct: 191 LLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEE-RTGHTLLERYGMTET-GMAL- 247

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
            N   G R  G+ G   PGVE  IV  D  +PL   ++GEI +RGPN+   Y+N  +AT 
Sbjct: 248 SNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATA 307

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL-IKYKGFQV 231
               + GW  TGD+G  D DG   ++ R  +  IK  G++V
Sbjct: 308 EAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKV 348

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  144 bits (366), Expect = 3e-40
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 17/224 (7%)

Query: 10  GELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIW 66
            E D + + V PL+H FG  L  + C  +  G+ ++     FD    L A+E+ R T ++
Sbjct: 238 TEEDRLCIPV-PLYHCFGMVLGNLAC--VTHGATMVYPGEGFDPLATLAAVEEERCTALY 294

Query: 67  VVPPLILALAKHGLVKKFDLSSLK---LVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123
            VP + +A   H    +FDLSSL+   + GS   P   E+M+     +  + V   YG+T
Sbjct: 295 GVPTMFIAELDHPDFARFDLSSLRTGIMAGS---PCPIEVMKRVIDKMHMSEVTIAYGMT 351

Query: 124 ETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
           ETS ++T    ++     + + + G   P +E  IV  +T + +P  + GE+  RG ++M
Sbjct: 352 ETSPVSTQTRTDDPLE--KRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVM 409

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           +GY+N+ + T   ID  GW+HTGDL   D +G + +V RIK++I
Sbjct: 410 KGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI 453

Length = 559

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  142 bits (359), Expect = 2e-39
 Identities = 74/213 (34%), Positives = 117/213 (54%), Gaps = 8/213 (3%)

Query: 17  LCV-LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILA 74
           LCV +PL+H FG+ +   G +  G+C++   + FD    L+A+E+ R T ++ VP + +A
Sbjct: 245 LCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIA 304

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA---TM 131
              H     FDLSSL+      AP   E+M      +  A V   YG+TETS ++   T 
Sbjct: 305 ELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTA 364

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
            +     R + + G   P +E  +V  D    +P  ++GE+  RG ++M+GY+NN +AT 
Sbjct: 365 ADDL--ERRVETVGRTQPHLEVKVVDPDGAT-VPRGEIGELCTRGYSVMKGYWNNPEATA 421

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
            +ID+ GW+HTGDL   D  G + +V R K++I
Sbjct: 422 ESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMI 454

Length = 558

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  140 bits (356), Expect = 5e-39
 Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 13/239 (5%)

Query: 1   MVTMDQETAGELDY----VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA 56
           + TM Q    E ++     FL   PL H  G   +    L +G  +I++AKFD    LRA
Sbjct: 193 IATMAQIQLAEWEWPADPRFLMCTPLSHAGGAFFLPT--LLRGGTVIVLAKFDPAEVLRA 250

Query: 57  IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           IE+ R+T  ++VP +I AL  H  ++  DLSSL+ V  GA+P+    + E A        
Sbjct: 251 IEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAE-AIERFGPIF 309

Query: 117 IQGYGLTET-SGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI 172
            Q YG TE    I  +   ++     + + S G   PG+   ++  D +  +   ++GEI
Sbjct: 310 AQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGR-EVAQGEVGEI 368

Query: 173 WLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            +RGP +M GY+N  + T     + GW+HTGD+   D DG  Y+VDR K++I   GF V
Sbjct: 369 CVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNV 426

Length = 524

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  141 bits (357), Expect = 5e-39
 Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 12/227 (5%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
           G+     L  LP+FH +GL +     +  G  ++L+   D+++ L A++KH  T +  VP
Sbjct: 259 GDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVP 318

Query: 70  PL---ILALA-KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET 125
           PL   I   A + G+    DLS ++   SGA  L    +E   K +    +++GYGLTET
Sbjct: 319 PLYEKIAEAAEERGV----DLSGVRNAFSGAMALPVSTVELWEK-LTGGLLVEGYGLTET 373

Query: 126 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLGEIWLRGPNMMRGYY 184
           S I  + N  +  R  G  G   P  E  IV  +   + +P  + GE+ +RGP + +GY+
Sbjct: 374 SPII-VGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYW 432

Query: 185 NNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           N  + T  +    GW  TGD+   + DG + +VDRIKELI   GF V
Sbjct: 433 NRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNV 478

Length = 573

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  139 bits (351), Expect = 2e-38
 Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LPLFH+ G+ +     L  G  II+  KF+    L  IEKH+VT +  VP +  AL   
Sbjct: 196 LLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINC 255

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSGIATMENSFAG 137
              +  +L S++   +G AP  +ELM E   +        QG+G+TETS    M +    
Sbjct: 256 SKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFLFG---QGFGMTETSPTVFMLSEEDA 312

Query: 138 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK 197
            R +GS G      +  ++  +  K +   ++GE+ +RGPN+M+ Y+N   AT+ TI + 
Sbjct: 313 RRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELLIRGPNVMKEYWNRPDATEETI-QD 370

Query: 198 GWVHTGDLGYFDGDGQLYVVDRIKELI 224
           GW+ TGDL   D DG +Y+V R KE+I
Sbjct: 371 GWLCTGDLARVDEDGFVYIVGRKKEMI 397

Length = 496

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  137 bits (347), Expect = 9e-38
 Identities = 74/219 (33%), Positives = 113/219 (51%), Gaps = 2/219 (0%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           + L  LPL+H   L V     L  G+  +++   D E+ LR IE  R+T  +  P + ++
Sbjct: 214 IPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWIS 273

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +H      DLSSL+    GA+ +  E+++E  + +P       YG TE + +AT+   
Sbjct: 274 LLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGP 333

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
               R  GSAG     VE  +V  D    + P ++GEI  R P +M GY+++ + T    
Sbjct: 334 EEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF 392

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
            + GW H+GDLG  D +G + VVDR K++IK  G  V S
Sbjct: 393 -RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVAS 430

Length = 523

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  134 bits (339), Expect = 9e-37
 Identities = 73/213 (34%), Positives = 108/213 (50%), Gaps = 7/213 (3%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V L  LPLFH FGL V     L  G  ++      D +     I  ++ T +   P  + 
Sbjct: 188 VLLGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLR 247

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
             A++      D SSL+LV +GA  L +   E   +      +++GYG TE S + ++ N
Sbjct: 248 GYARN--AHPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVISV-N 303

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL- 192
           +  G++  G+ G   PG+E  IVS +T + LP  + G + +RGPN+M GY NNE+ T   
Sbjct: 304 TPMGNK-PGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEV 362

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
            +   GW  TGD+G  D DG L +V R+K   K
Sbjct: 363 EVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAK 395

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  128 bits (325), Expect = 1e-35
 Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 14/222 (6%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA------KFDLEMFLRAIEKHRVTHIW 66
             V L  LPLFHV G  V     L +G+ ++L           +  F + +E++RVT + 
Sbjct: 43  GDVLLNGLPLFHVGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLS 102

Query: 67  VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
            VP ++ AL +  L    D+SSL+   +GAAPL  E+     + V    V++GYG+TE +
Sbjct: 103 AVPTVLAALLQVPLGDA-DISSLRYALTGAAPLPVEVARR-FEAVTGVPVVEGYGMTEGT 160

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRG 182
           G++ +     G R  GS G   P     +  +D      +   P ++G + +RGPN+  G
Sbjct: 161 GVSAINPRG-GPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPG 219

Query: 183 YYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           Y N+       ++  GW++TGDLG  D DG L++  R K+LI
Sbjct: 220 YLNDAHNAGARLED-GWLNTGDLGRIDADGYLWLTGRAKDLI 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  131 bits (332), Expect = 1e-35
 Identities = 64/221 (28%), Positives = 93/221 (42%), Gaps = 16/221 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM---AKFDLEMFLRAIEKHRVTHIWVVPPL 71
            F        ++GL       L  G+  +L      +  E    A+EK++VT     P  
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +  L K GL + +DLSSL+++GS   PL  E  E    +     ++  YG TET      
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-FYSALGVWILDIYGQTETGMGF-- 331

Query: 132 ENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MMRGYYNNE 187
               AG   +  GS+G   PG     V  D   P+PP   GE+ +R P   M   Y+N+ 
Sbjct: 332 ---IAGRPPVKNGSSGLPLPGYAVRRV-DDEGNPVPPGV-GELVVRLPWPGMALTYWNDP 386

Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
           +  K       W  TGD    D DG  ++  R  ++IK  G
Sbjct: 387 ERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSG 426

Length = 528

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  129 bits (326), Expect = 2e-35
 Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 15/219 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L  LPLFH+   A      L  G+ ++L+ +F    F   + KH  T   ++  +   
Sbjct: 124 VLLTPLPLFHINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAI 183

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATME 132
           L K           L+ V    APL   +     +   V    +++GYG+TET       
Sbjct: 184 LMKQPPSPDDRDHPLRFVFG--APLPAAIWPAFEERFGVK---LVEGYGMTETGVPI--- 235

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN---MMRGYYNNEQA 189
            +       GS G   PGVE  IV  D +  +PP ++GE+ +R      M +GYY   +A
Sbjct: 236 IAPGDPAPPGSCGRPRPGVEVRIVDEDGR-EVPPGEVGELVVRPRRPWAMFKGYYGMPEA 294

Query: 190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
           T     + GW HTGD G  D DG LY VDR K+ I+ +G
Sbjct: 295 TAKAW-RNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRG 332

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  130 bits (330), Expect = 3e-35
 Identities = 56/141 (39%), Positives = 73/141 (51%), Gaps = 9/141 (6%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA 148
           ++L+ SG APL  +  E   +      V+QGYGLTET    T+  S  G    G  G   
Sbjct: 271 VRLMLSGGAPLSPDTQEFL-RVALGCPVLQGYGLTETCAGGTL--SDPGDTTTGHVGPPL 327

Query: 149 PGVEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGD 204
           P  E  +V V       K  PP   GEI +RGPN+ +GYY N + T    D+ GW HTGD
Sbjct: 328 PCCEIKLVDVPEMGYFAKDDPPR--GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGD 385

Query: 205 LGYFDGDGQLYVVDRIKELIK 225
           +G +  DG L ++DR K L K
Sbjct: 386 IGEWLPDGTLKIIDRKKNLFK 406

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  131 bits (332), Expect = 3e-35
 Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 28/227 (12%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL-----------MAKFDLEMFLRAIEKHRVT 63
              C LPLFHV  L V     L +G+ ++L           +A F      + +E++R+ 
Sbjct: 256 TVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANF-----WKIVERYRIN 310

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELME--ECAKNVPSATVIQGYG 121
            +  VP +  AL +   V   D+SSL+    GAAPL  E+    E A  V    +++GYG
Sbjct: 311 FLSGVPTVYAALLQVP-VDGHDISSLRYALCGAAPLPVEVFRRFEAATGVR---IVEGYG 366

Query: 122 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD----TQKPLPPNQLGEIWLRGP 177
           LTE + ++++ N   G R IGS G   P     +V +D      +    +++G + + GP
Sbjct: 367 LTEATCVSSV-NPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGP 425

Query: 178 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           N+  GY        L ++  GW++TGDLG  D DG  ++  R K+LI
Sbjct: 426 NVFSGYLEAAHNKGLWLED-GWLNTGDLGRIDADGYFWLTGRAKDLI 471

Length = 632

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  128 bits (324), Expect = 5e-35
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 21/210 (10%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L  LPL+H+ GL+++    ++  +  I+     L   L  I   RVTHI +VP  +  L 
Sbjct: 156 LLSLPLYHISGLSILFRWLIEGATLRIVDKFNQL---LEMIANERVTHISLVPTQLNRLL 212

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTET-SGIATMENS 134
             G        +L+ +  G + +   L+EE     +P   +   YG+TET S + T    
Sbjct: 213 DEGGHN----ENLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTETCSQVTTATPE 265

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
              +R     G    G E  I  VD ++       GEI ++G N+M+GY    + T    
Sbjct: 266 MLHAR--PDVGRPLAGREIKI-KVDNKE-----GHGEIMVKGANLMKGYLYQGELTPAF- 316

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           +++GW +TGD+G  DG+G LYV+ R  +LI
Sbjct: 317 EQQGWFNTGDIGELDGEGFLYVLGRRDDLI 346

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  128 bits (323), Expect = 1e-34
 Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 10/226 (4%)

Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFG--LAVITCGQLQKGSCIILMAKFDLEMFLRAIE 58
            V     T  +   V L   PL H+ G    +     L  G+ ++L  ++D    L  I 
Sbjct: 125 YVERLGLTPDD---VVLMPSPLAHITGFLYGLELP--LLLGATVVLQDRWDPARALELIR 179

Query: 59  KHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
           +H VT      P +  L         DL SL++   G AP+ +EL    A+ +  A V++
Sbjct: 180 EHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAPVPRELARRAAEALG-AKVVR 238

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
            YG+TE   +          +   + G   PGVE  IV  D    +PP + GE+ +RGP 
Sbjct: 239 AYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVD-DDGNDVPPGEEGELQVRGPQ 297

Query: 179 MMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           +  GY +    T+   D  GW  TGDLG  D DG L +  R K++I
Sbjct: 298 LFLGYLDPPDNTEAFTD-DGWFRTGDLGRLDADGYLRITGRKKDII 342

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  126 bits (319), Expect = 1e-33
 Identities = 73/216 (33%), Positives = 114/216 (52%), Gaps = 5/216 (2%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H+F L V     ++ G   +L+    D+  F++ ++K+  T I  V  L  AL  +
Sbjct: 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNN 316

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS 138
              ++ D SSLKL   G   + + + E   K +    +++GYGLTE S + ++ N +   
Sbjct: 317 EEFQELDFSSLKLSVGGGMAVQQAVAERWVK-LTGQYLLEGYGLTECSPLVSV-NPYDLD 374

Query: 139 RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKG 198
              GS G   P  E  +V  D    +PP + GE+W++GP +M GY+   +AT   I K G
Sbjct: 375 YYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDG 432

Query: 199 WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
           W+ TGD+   D +G L +VDR K++I   GF V  N
Sbjct: 433 WLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPN 468

Length = 560

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  125 bits (316), Expect = 2e-33
 Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 28/221 (12%)

Query: 17  LCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           L   PL+H     +GL     G +     ++L  +FD E  L+ IE+HR+TH+ +VP + 
Sbjct: 200 LLTGPLYHSAPNAYGLRAGRLGGV-----LVLQPRFDPEELLQLIERHRITHMHMVPTMF 254

Query: 73  LALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-------TVIQGYGLT 123
           + L K    +  K+D+SSL+ V   AAP        C  +V  A        + + YG T
Sbjct: 255 IRLLKLPEEVRAKYDVSSLRHVIHAAAP--------CPADVKRAMIEWWGPVIYEYYGST 306

Query: 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGY 183
           E+ G  T   S     + G+ G  APG E   V  +  +PLP  ++GEI+ R        
Sbjct: 307 ES-GAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFT 364

Query: 184 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           Y+N+   +  ID+ G++ +GD+GY D DG L++ DR ++++
Sbjct: 365 YHNKPEKRAEIDRGGFITSGDVGYLDADGYLFLCDRKRDMV 405

Length = 509

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  125 bits (315), Expect = 3e-33
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 6/212 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           V    +PLFH+ G+  +  G L  G+  ++  +  FD    L  +E  +VT I++VP   
Sbjct: 218 VGFVGVPLFHIAGIGSMLPG-LLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQW 276

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
            A+      +  DL+ L+++  GAAP    L+ + A   P A ++  +G TE S +  M 
Sbjct: 277 QAVCAEQQARPRDLA-LRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCML 335

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                 R +GS G + P V A +V  +    +P  ++GEI  R P +M GY+NN +AT  
Sbjct: 336 LGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAE 394

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
                GW H+GDL   D +G ++VVDR K++I
Sbjct: 395 AFA-GGWFHSGDLVRQDEEGYVWVVDRKKDMI 425

Length = 542

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  125 bits (316), Expect = 3e-33
 Identities = 75/258 (29%), Positives = 112/258 (43%), Gaps = 64/258 (24%)

Query: 20  LPLFHVFGL--AVITCGQLQKGSCIILMAKFDLEMF-------LRAIEKHRVTHIWVVPP 70
           LPL+H  GL   ++    L  G  ++LM+      F       L AI ++R T     P 
Sbjct: 196 LPLYHDMGLIGGLLQP--LYAGFPVVLMSPLA---FLRRPLRWLEAISRYRATVSGA-PN 249

Query: 71  LILALAKHGLVKKF--------DLSSLKLVGSGAAPLGKELMEE-CAKNVP---SATVIQ 118
               L     V++         DLSS ++  +GA P+  + +E    +  P         
Sbjct: 250 FAYDLC----VRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFL 305

Query: 119 -GYGLTETSGIATM-------------------------ENSFAGSRNIGSAGALAPGVE 152
             YGL E +   +                              A +R + S G   PG E
Sbjct: 306 PCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHE 365

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT------IDKKGWVHTGDLG 206
             IV  +T++PLP  ++GEIW+RGP++  GY+N  +AT  T       D+ GW+ TGDLG
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

Query: 207 YFDGDGQLYVVDRIKELI 224
           +   DG+LYV  R+K+LI
Sbjct: 426 FLH-DGELYVTGRLKDLI 442

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  123 bits (312), Expect = 8e-33
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 27/228 (11%)

Query: 15  VFLCVLPLFHVFG-----LAVITCGQLQKGSCIILMAKF-DLEMFLRAIEKHRVTHIWVV 68
             L V+P+FHV        A +       G+ ++L  ++ D    L  IE+ +VT    V
Sbjct: 207 TVLPVVPMFHVNAWGLPYAATMV------GAKLVLPGRYLDPASLLDLIEEEKVTVSAGV 260

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
           P + L L  +      DLSSL+ V  G + L + L+E+  +      VI  +G+TETS +
Sbjct: 261 PTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEER--GVEVIHAWGMTETSPL 318

Query: 129 ATMENSFAGSRNIG---------SAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGP 177
            T+        ++            G   PGVE  IV  +    LP +   +GE+ +RGP
Sbjct: 319 GTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGN-ELPWDGKTVGELVVRGP 377

Query: 178 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
            +   YY + + T+  + + GW  TGD+   D DG + + DR K++IK
Sbjct: 378 WVTGSYYKDPEKTE-ELTRDGWFRTGDVAVIDEDGYIQITDRAKDVIK 424

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  124 bits (314), Expect = 1e-32
 Identities = 72/223 (32%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 11   ELDYVFLCVLPLFHVFGLAVITCGQLQKG-SCIILMAKFDLEMFLRAIEKHRVTHIWVVP 69
              D V L  LP FH FGL V     L +G   +      D     + + KHR T +   P
Sbjct: 821  RNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTP 880

Query: 70   PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
              +    ++  +     +SL+LV +GA  L  E+ +   +      +++GYG TETS +A
Sbjct: 881  TFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVA 939

Query: 130  T--MENSFA-------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMM 180
            +  + +  A       GS+  GS G   PGV   IV  +T + LPP + G I + GP +M
Sbjct: 940  SVNLPDVLAADFKRQTGSKE-GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVM 998

Query: 181  RGYYNNEQATK---LTIDKKGWVHTGDLGYFDGDGQLYVVDRI 220
            +GY  + + T      ID  GW  TGD G+ D DG L + DR 
Sbjct: 999  KGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRY 1041

Length = 1146

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  122 bits (307), Expect = 4e-32
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H++   A   C  +     +++    D+  F++ + K R + +  +  L +
Sbjct: 260 VMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFV 319

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           AL  H   K  D S+LKL  SG   L K   E   + +   T+++GYGLTETS +A+  N
Sbjct: 320 ALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQ-LTGCTIVEGYGLTETSPVAST-N 377

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
            +     +G+ G   PG  AL V  D    LP  + GE+ ++GP +M+GY+   +AT   
Sbjct: 378 PYGELARLGTVGIPVPGT-ALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEA 436

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
           +D +GW  TGD+   D DG + +VDR K+LI   GF V  N
Sbjct: 437 LDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPN 477

Length = 562

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  121 bits (306), Expect = 5e-32
 Identities = 70/235 (29%), Positives = 107/235 (45%), Gaps = 42/235 (17%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVP------ 69
            L  LPL H+    ++  G L  G+ +  +    L+ F   +++ R T  + VP      
Sbjct: 181 LLSYLPLAHIAERVIVEGGSLYSGAEVFFV--ESLDTFAADLQRARPTVFFSVPRLWTKF 238

Query: 70  -------------------PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
                              P++ +L K  ++K   L   +L GSGAAP+   L+    K 
Sbjct: 239 QQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRK- 297

Query: 111 VPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG 170
                + +GYG+TE    +T+  ++ G R IG+ G   PGVE  I           ++ G
Sbjct: 298 -LGLPICEGYGMTENFAYSTL--NYPGDRRIGTVGKPIPGVELKI-----------SEDG 343

Query: 171 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
           EI +R P +M GYY + + T     + GW+HTGD G  D DG L +  R+KEL K
Sbjct: 344 EILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRVKELFK 398

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  120 bits (303), Expect = 8e-32
 Identities = 75/222 (33%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L V PL+HV    +     L  G  + +  +FD E  L AIE+HR+T  W+ P ++  +
Sbjct: 193 LLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRV 252

Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGIATMENS 134
                  +FDL SL     G     +  + +  +    A  I  YGLTET SG   ME  
Sbjct: 253 LTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME-- 310

Query: 135 FAGSR--NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
            AG     IGS G     VE  I      + LPPN  GEI +RGP + +GY+ + + T  
Sbjct: 311 -AGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAE 368

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
                 W  +GD+GY D +G LY+ DR K++I   G  + S+
Sbjct: 369 AF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASS 409

Length = 497

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score =  120 bits (302), Expect = 2e-31
 Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 33/222 (14%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           D V+L   PL+H     FG++ +  G       +++M KFD E  L  IE++RVTH  +V
Sbjct: 187 DSVYLSPAPLYHTAPLRFGMSALALGGT-----VVVMEKFDAEEALALIERYRVTHSQLV 241

Query: 69  PPL---ILALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-------TVI 117
           P +   +L L +   V+ ++D+SSL++    AAP        C   V  A        + 
Sbjct: 242 PTMFVRMLKLPEE--VRARYDVSSLRVAIHAAAP--------CPVEVKRAMIDWWGPIIH 291

Query: 118 QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP 177
           + Y  +E  G+ T+  S     + GS G    G E  I+  +    LPP ++G ++    
Sbjct: 292 EYYASSEGGGV-TVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVYFEMD 348

Query: 178 NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 219
                Y+N+ + T    +  GWV  GD+GY D DG LY+ DR
Sbjct: 349 GYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDR 390

Length = 502

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  114 bits (288), Expect = 2e-29
 Identities = 72/221 (32%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V +  LPL+H+F L       ++ G C  L++   D+  F++ ++K R T    V  L  
Sbjct: 256 VVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFN 315

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
            L       + D SSLK+   G   + + + E   K V   T+++ YGLTETS  A + N
Sbjct: 316 GLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERW-KQVTGLTLVEAYGLTETSPAACI-N 373

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
                   GS G   P  +A I   D    L   ++GE+ ++GP +M+GY+   + T   
Sbjct: 374 PLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKV 432

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
           +D  GW+HTGD+   D  G +Y+VDR K++I   GF V  N
Sbjct: 433 MDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPN 473

Length = 560

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score =  114 bits (289), Expect = 2e-29
 Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 37/240 (15%)

Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-M-----AKFDLEMFLRAIEKHRVT 63
           GE+D   L   PLF +FG A    G     + +I  M     A  D      AIE++ VT
Sbjct: 215 GEID---LPTFPLFALFGPA---LG----MTSVIPDMDPTRPATVDPAKLFAAIERYGVT 264

Query: 64  HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQGYGL 122
           +++  P L+  L ++G      L SL+ V S  AP+   ++E     +P  A ++  YG 
Sbjct: 265 NLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGA 324

Query: 123 TETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIVSVDT--------QKPLPP 166
           TE   I+++E+      +R     GA         GVE  I+++             L  
Sbjct: 325 TEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLAT 384

Query: 167 NQLGEIWLRGPNMMRGYYNNEQATKLT--IDKKG--WVHTGDLGYFDGDGQLYVVDRIKE 222
            ++GEI + GP + R YYN  +AT+L    D +G  W   GDLGY D  G+L+   R   
Sbjct: 385 GEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAH 444

Length = 552

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  114 bits (286), Expect = 3e-29
 Identities = 65/216 (30%), Positives = 109/216 (50%), Gaps = 5/216 (2%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           LPL+H++         +  G+  IL++   DL   ++ + K + +    +  L +AL  +
Sbjct: 258 LPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN 317

Query: 79  GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS 138
              +K D S+LKL  SG   L      E  K V    + +GYG+TETS + ++ N     
Sbjct: 318 EAFRKLDFSALKLTLSGGMALQLA-TAERWKEVTGCAICEGYGMTETSPVVSV-NPSQAI 375

Query: 139 RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKG 198
           + +G+ G   P     ++  D    LP  ++GE+ ++GP +M+GY+   +AT   +D  G
Sbjct: 376 Q-VGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDG 433

Query: 199 WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
           W+ TGD+     DG + +VDR K++I   GF V  N
Sbjct: 434 WLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPN 469

Length = 562

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (286), Expect = 4e-29
 Identities = 73/224 (32%), Positives = 106/224 (47%), Gaps = 10/224 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLIL 73
            F+C LPL+H+F L V     ++ G   IL+    D+  F++ ++K++V     V  L  
Sbjct: 254 NFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYN 313

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIAT 130
           AL  +    K D S L +   G    G  +    A+     T   + +GYGL+ETS +AT
Sbjct: 314 ALLNNPDFDKLDFSKLIVANGG----GMAVQRPVAERWLEMTGCPITEGYGLSETSPVAT 369

Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
             N    +   G+ G   P  E  I   D    LP  + GEI +RGP +M GY+N    T
Sbjct: 370 C-NPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGEICIRGPQVMAGYWNRPDET 427

Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
              +   G+  TGD+G  D  G   +VDR K++I   GF V  N
Sbjct: 428 AKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPN 471

Length = 557

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score =  113 bits (284), Expect = 7e-29
 Identities = 69/222 (31%), Positives = 101/222 (45%), Gaps = 30/222 (13%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
             L   P+FH  G A +T   +  GS ++L  +FD E  L  I KH+ T + VVP +   
Sbjct: 250 TTLLPAPMFHATGWAHLTLA-MALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSR 308

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-------NVPSATVIQGYGLTE 124
           IL L    L  K+D SSLK++    + L  EL     +       N+        YG TE
Sbjct: 309 ILDLGPEVL-AKYDTSSLKIIFVSGSALSPELATRALEAFGPVLYNL--------YGSTE 359

Query: 125 TS--GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
            +   IAT E+    +   G+ G    GV   I+  +    +P   +G I++       G
Sbjct: 360 VAFATIATPEDL---AEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEG 415

Query: 183 YYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           Y +     K  ID  G + +GD+GYFD DG L+V  R  ++I
Sbjct: 416 YTDG--RDKQIID--GLLSSGDVGYFDEDGLLFVDGRDDDMI 453

Length = 549

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score =  111 bits (279), Expect = 1e-28
 Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 19/216 (8%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           +LP  + FG+ V+             M +FD E     + ++ VT+ ++ P  +  + + 
Sbjct: 150 LLPALY-FGVPVVAYR----------MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRV 198

Query: 79  G-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG 137
           G    ++DL  L+ V SG   LG+EL+E     +   TV + YG TE + +     +  G
Sbjct: 199 GSERARYDLR-LRAVASGGESLGEELLEWARDEL-GLTVNEFYGQTEANLVVG-NCAALG 255

Query: 138 SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN--MMRGYYNNEQATKLTID 195
               GS G   PG E  +V  D  +P+PP ++GEI ++ P+  M  GY+NN +AT     
Sbjct: 256 PARPGSMGKPVPGHEVAVVD-DAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKF- 313

Query: 196 KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              W+ TGDLG  D DG L+   R  ++IK  G+++
Sbjct: 314 AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRI 349

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  112 bits (281), Expect = 2e-28
 Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 20/236 (8%)

Query: 9   AGELDYVFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTH 64
            G  D VFL  LP F +    FGL       L  G+ ++L+A++D   F+ A+E++RVT 
Sbjct: 247 VGGEDSVFLSFLPEFWIAGENFGLLF----PLFSGATLVLLARWDAVAFMAAVERYRVTR 302

Query: 65  IWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA---KNVPSATVIQG-Y 120
             ++    + L  H    ++DLSSL+ V        K+L  +     + +  + + +  +
Sbjct: 303 TVMLVDNAVELMDHPRFAEYDLSSLRQVR--VVSFVKKLNPDYRQRWRALTGSVLAEAAW 360

Query: 121 GLTETSGIATMENSF-AGSRNIGSA----GALAPGVEALIVSVDTQKPLPPNQLGEIWLR 175
           G+TET    T    F     ++ S     G   PG E  I   +T + LP    GEI +R
Sbjct: 361 GMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVR 420

Query: 176 GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            P++++GY+N  +AT   + + GW+HTGD+G  D  G L+ + R KE++K  G  V
Sbjct: 421 TPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSV 475

Length = 567

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  111 bits (279), Expect = 3e-28
 Identities = 69/211 (32%), Positives = 109/211 (51%), Gaps = 13/211 (6%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           L V PL H  G+  +   Q+ +G+  +L+   +FD       +E+HRVT+++ VP ++  
Sbjct: 210 LVVAPLSHGAGIHQLC--QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---- 130
           L +H  V ++D SSL+ V    AP+ +   ++ A       ++Q +GL E +G  T    
Sbjct: 268 LVEHPAVDRYDHSSLRYVIYAGAPMYRA-DQKRALAKLGKVLVQYFGLGEVTGNITVLPP 326

Query: 131 -MENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 188
            + ++  G    IG+ G    G+E  I   D  + LPP + GEI + GP +  GYYNN +
Sbjct: 327 ALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPE 385

Query: 189 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 219
           A      + GW  TGDLG+ D  G LY+  R
Sbjct: 386 ANAKAF-RDGWFRTGDLGHLDARGFLYITGR 415

Length = 528

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  110 bits (278), Expect = 6e-28
 Identities = 53/136 (38%), Positives = 80/136 (58%), Gaps = 12/136 (8%)

Query: 94  SGAAPLGKELMEE-CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
           +GAAP+ +E +E   + N+P   +++ YG++ETSG  T+ N    +  + S G   PG E
Sbjct: 325 TGAAPISRETLEFFLSLNIP---IMELYGMSETSGPHTVSNP--QNYRLLSCGKALPGCE 379

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG 212
             I + D       + +GEI + G ++  GY N E+ T+  ID+ GW+H+GDLG+ D DG
Sbjct: 380 TKIHNPDA------DGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDG 433

Query: 213 QLYVVDRIKELIKYKG 228
            LY+  RIKELI   G
Sbjct: 434 FLYITGRIKELIITAG 449

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  109 bits (276), Expect = 7e-28
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 9/221 (4%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP+FH  GL V T   L  G+ +I + KFD +  L  +   R T +  VP   
Sbjct: 197 DDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFY 254

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   + +   + ++L  SG+APL  E   E  +    A +++ YG+TET+   +  
Sbjct: 255 TRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGHA-ILERYGMTETNMNTS-- 311

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK- 191
           N + G R  G+ G   PGV   +   +T   LPP ++G I ++GPN+ +GY+   + T  
Sbjct: 312 NPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAE 371

Query: 192 -LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
               D  G+  TGDLG  D  G +++V R K+LI   G+ V
Sbjct: 372 EFRAD--GFFITGDLGKIDERGYVHIVGRGKDLIISGGYNV 410

Length = 504

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score =  109 bits (275), Expect = 1e-27
 Identities = 66/225 (29%), Positives = 97/225 (43%), Gaps = 13/225 (5%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L  LP   VFG + +  G L  G+ ++    FD     RA+ +HRVTH +    ++
Sbjct: 222 GAVLLAALPFCGVFGFSTLL-GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEML 280

Query: 73  LALAKHGLVKKFDLSSLKLVGSGA-APLGKELMEE-CAKNVPSATVIQGYGLTETSG--- 127
             +      +  D  S +L G  + AP   EL     A+ VP   +   YG +E      
Sbjct: 281 RRILDTAGERA-DFPSARLFGFASFAPALGELAALARARGVPLTGL---YGSSEVQALVA 336

Query: 128 IATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 186
           +    +  +     G  G  A P              LP  + GEI +R P++MRGY +N
Sbjct: 337 LQPATDPVSVRIEGG--GRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDN 394

Query: 187 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             AT   +   G+  TGDLGY  GDGQ     R+ + ++  GF V
Sbjct: 395 PDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLV 439

Length = 540

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  108 bits (271), Expect = 4e-27
 Identities = 68/233 (29%), Positives = 103/233 (44%), Gaps = 38/233 (16%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + +  +       G   + + K D       IEKH+VTH+   
Sbjct: 210 VYLWTLPMFHCNGWCFPWAITAV-------GGTHVCLRKVDAPAIYDLIEKHKVTHLCGA 262

Query: 69  PPLILALAKHGLVKKFDLSS-LKLVGSGAAPLGK--ELMEECAKNVPSATVIQGYGLTET 125
           P ++  LA      K  L   ++++ +GA P     + MEE         V   YGLTET
Sbjct: 263 PTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELG-----FEVTHVYGLTET 317

Query: 126 SGIATM-------ENSFAGSRNI-----GSAGALAPGVEALIVSVDTQKPLPPN--QLGE 171
            G  T+       +   A  R       G        V+  +V  +T K +P +   +GE
Sbjct: 318 YGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVD--VVDPETMKDVPRDGKTIGE 375

Query: 172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           I +RG  +M+GYY N +AT+      GW H+GDL     DG + + DR K++I
Sbjct: 376 IVMRGNTVMKGYYKNPEATEEAF-AGGWFHSGDLAVVHPDGYIEIKDRSKDII 427

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score =  106 bits (268), Expect = 5e-27
 Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 16/208 (7%)

Query: 36  LQKGSCIILMAKFDLEMFL---RAIEKHRVTHIWVVPPLILALAKHGLVKKFD---LSSL 89
           L  G+ + ++ K  +   L     +++H +T  WV  P   +L    L ++ +   L SL
Sbjct: 160 LASGATLYVIPKEQIADPLALFEFLKEHGLTV-WVSVPSFASLLL--LSRELNPESLPSL 216

Query: 90  KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGSAGA 146
           +        L K+L +   +  P+A +I  YG TE +   T   +             G 
Sbjct: 217 RTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGY 276

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTG 203
             PG+ ALI+  D  +P+PP + GE+ + GP +  GY NN + T       + + W  TG
Sbjct: 277 PKPGLRALILDED-GRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTG 335

Query: 204 DLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           DL Y + DG L  + R    IK  G+++
Sbjct: 336 DLVYLEDDGLLVYLGRKDFQIKLHGYRI 363

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  107 bits (268), Expect = 6e-27
 Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 14/216 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHR--VTHIWVVPPLI 72
            FLC  P+FH+ GL       L  G  I++   F+ +  L  +      +TH + VP + 
Sbjct: 178 SFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMA 237

Query: 73  LALAKHGLVKKFDLSSLK----LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
            A         FD ++L+    L   GA    ++++      +P   ++ G+G++E   +
Sbjct: 238 QAFRAQ---PGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIP---MVDGFGMSEAGTV 291

Query: 129 ATMENSFAGSRN-IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 187
             M       R   G+AG   P V+  +V  D     P    GE+ LRGPN+  GY+   
Sbjct: 292 FGMSVDCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRP 350

Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKEL 223
           QAT       GW  TGD+   D DG  +VVDR K++
Sbjct: 351 QATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDM 386

Length = 488

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  107 bits (269), Expect = 1e-26
 Identities = 51/139 (36%), Positives = 71/139 (51%), Gaps = 17/139 (12%)

Query: 94  SGAAPLG---KELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
           SG  PL    +E +     NV    VIQG+GLTET     ++    G     + G L  G
Sbjct: 435 SGGGPLSAATQEFV-----NVVFGMVIQGWGLTETVCCGGIQ--RTGDLEPNAVGQLLKG 487

Query: 151 VEALIVSVD----TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLG 206
           VE  ++  +    T  P P    GEI LRGP + +GYY  E+ T+  +D+ GW HTGD+G
Sbjct: 488 VEMKLLDTEEYKHTDTPEPR---GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVG 544

Query: 207 YFDGDGQLYVVDRIKELIK 225
               +G L ++ R+K L K
Sbjct: 545 SIAANGTLRIIGRVKALAK 563

Length = 700

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score =  103 bits (258), Expect = 2e-25
 Identities = 69/223 (30%), Positives = 97/223 (43%), Gaps = 25/223 (11%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL- 71
           D V+L   PL+H      +     + G  +I+M  FD E +L  IE++ VTH  +VP + 
Sbjct: 200 DMVYLSPAPLYHSAPQRAVMLVI-RLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMF 258

Query: 72  --ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT------VI-QGYGL 122
             +L L +  +  K+DLSSL++    AAP        C   V          +I + Y  
Sbjct: 259 SRMLKLPEE-VRDKYDLSSLEVAIHAAAP--------CPPQVKEQMIDWWGPIIHEYYAA 309

Query: 123 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           TE  G  T  +S     + G+ G    G   L +  D    LPP + G IW  G      
Sbjct: 310 TEGLG-FTACDSEEWLAHPGTVGRAMFGD--LHILDDDGAELPPGEPGTIWFEGGRPFE- 365

Query: 183 YYNNEQATKLTIDKKG-WVHTGDLGYFDGDGQLYVVDRIKELI 224
           Y N+   T       G W   GD+GY D DG LY+ DR   +I
Sbjct: 366 YLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMI 408

Length = 511

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score =  101 bits (253), Expect = 1e-24
 Identities = 67/252 (26%), Positives = 102/252 (40%), Gaps = 49/252 (19%)

Query: 15  VFLCVLPLFHVFGL------AVIT-CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWV 67
           V L  +PL HV G+       V   C Q+   +  IL    D   +L  I+++RVT  W 
Sbjct: 210 VSLNWMPLDHVGGIVMLHLRDVYLGCQQIHVPTDYILA---DPLRWLDLIDRYRVTITWA 266

Query: 68  VPP-----LILALAKHGLVKKFDLSSLKLVGSGA----APLGKELMEECAKNVPSATVIQ 118
             P     L+    +    + +DLSSL+ + +      A   +  +E  A     A  I+
Sbjct: 267 --PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIR 324

Query: 119 -GYGLTETSGIATMENSFAGSRNIG-------------------------SAGALAPGVE 152
             +G++ET    T    F    + G                           G   PGV 
Sbjct: 325 PAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVA 384

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG 212
             IV  +    LP  ++G + +RGP +  GYY N +A      + GW  TGDLG+   DG
Sbjct: 385 IRIVD-EDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH-DG 442

Query: 213 QLYVVDRIKELI 224
           +L +  R K++I
Sbjct: 443 RLTITGREKDMI 454

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  100 bits (250), Expect = 2e-24
 Identities = 69/222 (31%), Positives = 100/222 (45%), Gaps = 21/222 (9%)

Query: 13  DYVFLCVLPLFHVFGLAVITC----GQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
             V+LC LP  H F L+        G    G  ++L      E+    IE+H VT   +V
Sbjct: 230 QTVYLCALPAAHNFPLS---SPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALV 286

Query: 69  PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI 128
           PPL     +    ++ DLSSL+L+  G A L   L    A+ VP+     G  L +  G+
Sbjct: 287 PPLASLWLQAAEWERADLSSLRLLQVGGARLSATL----ARRVPAVL---GCQLQQVFGM 339

Query: 129 ATMENSF-----AGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRG 182
           A    ++          I + G  L+P  E  +V  D   P+ P ++GE+  RGP  +RG
Sbjct: 340 AEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGN-PVAPGEVGELLTRGPYTIRG 398

Query: 183 YYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           YY   +      D  G+  +GDL   D DG L V  R+K+ I
Sbjct: 399 YYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQI 440

Length = 542

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 99.8 bits (249), Expect = 4e-24
 Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 5/197 (2%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G+  +L+  F  +  L  +E+ R T +    P I  L      +  DLS+L+    G   
Sbjct: 254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTT 313

Query: 99  LGKELMEECAK-NVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS 157
           + K++  EC +  +   +V   YG TE+S  A +      SR + + G  A GVE  +V 
Sbjct: 314 IPKKVARECQQRGIKLLSV---YGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD 370

Query: 158 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVV 217
            + +K LPP   GE   RGPN+  GY +  + T   +D++GW ++GDL   D  G + + 
Sbjct: 371 -EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKIT 429

Query: 218 DRIKELIKYKGFQVTSN 234
            R K++I   G  ++S 
Sbjct: 430 GRKKDIIVRGGENISSR 446

Length = 547

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 98.9 bits (247), Expect = 6e-24
 Identities = 72/258 (27%), Positives = 108/258 (41%), Gaps = 52/258 (20%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWV 67
           VFL  +PL H  GL          G    LM      +F+R          +HR T I  
Sbjct: 149 VFLSWMPLTHDMGLIGFHLTPTALGINQYLMPT---RLFIRRPLLWLDKASQHRAT-ILS 204

Query: 68  VP----PLILALAKHGLVKKFDLSSLKLVGSGAAP----LGKELMEECAK-NVPSATVIQ 118
            P      +L   K   +  +DLSS++L+ +GA P    L +E +E+ A   +    +  
Sbjct: 205 SPNFGYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYP 264

Query: 119 GYGLTETSGIAT----------------------------MENSFAGSRNIGSAGALAPG 150
            YGL E +   +                             +NS   + +    G+   G
Sbjct: 265 VYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNS--DAISFVEVGSPIDG 322

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG 210
            E  IV  D  + LP   +G I ++G N+  GYYNN +ATK +I   GW+ TGDLG+   
Sbjct: 323 CEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFLR- 380

Query: 211 DGQLYVVDRIKELIKYKG 228
           +G+L +  R K++I   G
Sbjct: 381 NGRLVITGRAKDIIIVNG 398

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 97.7 bits (244), Expect = 1e-23
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 21/201 (10%)

Query: 45  MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELM 104
             + D  +    I +H VT + + P L+  LA         L+SL+LV  G   L   L+
Sbjct: 196 EERDDAALLAALIAEHPVTVLNLTPSLLALLAAAL---PPALASLRLVILGGEALTPALV 252

Query: 105 EECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGALAPGVEALIVSV 158
           +      P A +I  YG TET+  +T       +        IG            ++  
Sbjct: 253 DRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRP---LANTRLYVLD- 308

Query: 159 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK--------LTIDKKGWVHTGDLGYFDG 210
           D  +P+P   +GE+++ GP + RGY N  + T            D      TGDL  +  
Sbjct: 309 DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLP 368

Query: 211 DGQLYVVDRIKELIKYKGFQV 231
           DG L  + RI + +K +G+++
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRI 389

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 97.7 bits (244), Expect = 2e-23
 Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 15/204 (7%)

Query: 40  SCIILMAKFDLEMFLRAIEKHRVTHIW-VVPPLILALAKHG--LVKKFDLSSLKLVGSGA 96
           + +I   +F  E + R +E ++VT +W   P  I  L   G  LVKK+DLSSL+ + S  
Sbjct: 274 TNVIDGGRFSPERWYRILEDYKVT-VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVG 332

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156
            PL  E++      V    +   + +TET GI  + N  A     GS G   PG+EA IV
Sbjct: 333 EPLNPEVVR-WGMKVFGLPIHDNWWMTETGGI-MIANYPAMDIKPGSMGKPLPGIEAAIV 390

Query: 157 SVDTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQL 214
             D    LPPN++G + ++   P+MMRG +NN +  +       W  +GD  Y D DG  
Sbjct: 391 D-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYF 448

Query: 215 YVVDRIKELIKYKG-----FQVTS 233
           +   R+ ++IK  G     F+V S
Sbjct: 449 WFQGRVDDVIKTSGERVGPFEVES 472

Length = 570

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 96.6 bits (241), Expect = 3e-23
 Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 14/205 (6%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
                G+ + +    +FD E  L  +E++ VT  +  PP     L +  L   +D S L+
Sbjct: 143 APWLLGAAVFVYHGRRFDAERTLELLERYGVT-TFCAPPTAYRMLLQQDL-SSYDFSHLR 200

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
            V S   PL  E+++   +      +  GYG TET     + N        GS G  APG
Sbjct: 201 HVVSAGEPLNPEVID-WWRAATGLPIRDGYGQTET--GLLVANFPGMEVKPGSMGRPAPG 257

Query: 151 VEALIVSVDTQKPLPPNQLGEIWL----RGPNMMRGYYNNEQATKLTIDKKGWVHTGDLG 206
               I+  +  + LPP + G+I +    R P + RGY  + + T+ TI +  W  TGD  
Sbjct: 258 YRVAIIDDEGNE-LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATI-RGDWYLTGDRA 315

Query: 207 YFDGDGQLYVVDRIKELIKYKGFQV 231
             D DG  + V R  ++IK  G+++
Sbjct: 316 IKDEDGYFWFVGRADDVIKSSGYRI 340

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 97.1 bits (242), Expect = 4e-23
 Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 20/147 (13%)

Query: 89  LKLVGSGAAPLGKELME---ECAKNVPSATVIQGYGLTETSG-IATMENSFAGSRNIGSA 144
           ++ + SGA+PL  ++ME    C        V++GYG+TETS  I+ M+    G    G  
Sbjct: 378 VRFMSSGASPLSPDVMEFLRICF----GGRVLEGYGMTETSCVISGMDE---GDNLSGHV 430

Query: 145 GALAPGVEALIVSV------DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKG 198
           G+  P  E  +V V         +P P    GEI +RGP + +GYY +E  T+  ID+ G
Sbjct: 431 GSPNPACEVKLVDVPEMNYTSEDQPYPR---GEICVRGPIIFKGYYKDEVQTREVIDEDG 487

Query: 199 WVHTGDLGYFDGDGQLYVVDRIKELIK 225
           W+HTGD+G +   G+L ++DR K + K
Sbjct: 488 WLHTGDIGLWLPGGRLKIIDRKKNIFK 514

Length = 651

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 95.8 bits (239), Expect = 6e-23
 Identities = 67/231 (29%), Positives = 102/231 (44%), Gaps = 58/231 (25%)

Query: 17  LCVLPLF----HVFGLAVITCGQLQKGSCIILMA----------KFDLEMFLRAIEKHRV 62
           LC+LPL     ++ G+       L  G+ +IL+             D   F+ A+ + + 
Sbjct: 157 LCLLPLATLLENIAGVYA----PLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQP 212

Query: 63  THIWVVPPLILAL---AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQ 118
             + +VP L++AL    + G +      SL+ V  G A +   L++      +P   V +
Sbjct: 213 HSLILVPQLLMALVAAVEQGPLP---PESLRFVAVGGARVSPSLLQRARALGLP---VYE 266

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-----GEIW 173
           GYGL+E + + ++ N+    R  GS G                KPLP  Q+     GEI 
Sbjct: 267 GYGLSECASVVSL-NTPGADR-PGSVG----------------KPLPHVQVSIANDGEIL 308

Query: 174 LRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           +RG  M+ GY     AT    D   W  TGDLG+ D +G LY+  R K LI
Sbjct: 309 VRGSLML-GYLGEPPAT----DD--WWATGDLGHLDEEGYLYINGRKKNLI 352

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 95.6 bits (239), Expect = 7e-23
 Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 21/208 (10%)

Query: 39  GSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSG 95
           G+ ++L       D E     + +HR+T + +VP L+ AL      +   L SL+LV  G
Sbjct: 159 GATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPAALPSLRLVIVG 216

Query: 96  AAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-----ENSFAGSRNIGSAGALAPG 150
              L  EL+    +  P A ++  YG TET+   T      ++   GS  IG        
Sbjct: 217 GEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRP---IAN 273

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK-----LTIDKKG--WVHTG 203
               ++  +  +P+P    GE+++ G  + RGY N  + T            G     TG
Sbjct: 274 TRVYVLD-EDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTG 332

Query: 204 DLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           DL  +  DG L  + R  + +K +G+++
Sbjct: 333 DLARWLPDGNLEFLGRADDQVKIRGYRI 360

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 94.4 bits (235), Expect = 2e-22
 Identities = 73/250 (29%), Positives = 109/250 (43%), Gaps = 34/250 (13%)

Query: 8   TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-----AKFDLEMFLRAIEKHRV 62
             G+ D   L   P F +FG A      L   + I  M     A  D     +AI +   
Sbjct: 124 REGDRD---LAAFPPFALFGPA------LGVTTVIPAMDPTAPAALDPAKLAQAIREIGA 174

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV-PSATVIQGYG 121
           + ++  P L+  +A++       L SL+ V S  AP+  +L+     N+ P A +   YG
Sbjct: 175 SCVFGSPALLKNVARYCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYG 234

Query: 122 LTETSGIATMENS--FAGSRNIGSAGA------LAPGVEALIV--------SVDTQKPLP 165
            TE   +A++E     A S     AGA        PG++  I+        S D    LP
Sbjct: 235 ATEALPVASIEGREVLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELP 294

Query: 166 PNQLGEIWLRGPNMMRGYYNNEQATKLT---IDKKGWVHTGDLGYFDGDGQLYVVDRIKE 222
           P ++GEI + GP++ R YYN  +ATKL       + W   GDLGYFD  G+L+   R   
Sbjct: 295 PGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAH 354

Query: 223 LIKYKGFQVT 232
            ++  G  + 
Sbjct: 355 RVETAGGTLF 364

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 93.7 bits (233), Expect = 4e-22
 Identities = 65/235 (27%), Positives = 103/235 (43%), Gaps = 17/235 (7%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRV 62
           + Q+T       +LC LP  H + L+     G    G C++L            IE+H+V
Sbjct: 220 LTQQT------RYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKV 273

Query: 63  THIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA---TVIQG 119
           T   +VPP +    +     + DLSSLKL+  G    G +     A+ VP+     + Q 
Sbjct: 274 TVTALVPPAVALWMQAASKSRADLSSLKLLQVG----GAKFSAAAARRVPAVFGCQLQQV 329

Query: 120 YGLTETSGIATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
           +G+ E     T  +  A      + G  ++P  E  +V  D   P+ P + G +  RGP 
Sbjct: 330 FGMAEGLVNYTRLDDPA-EIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPY 387

Query: 179 MMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
             RGYY   +      D +G+ +TGDL     +G + VV R K+ I   G ++ +
Sbjct: 388 TFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAA 442

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 93.1 bits (232), Expect = 5e-22
 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 22/192 (11%)

Query: 50  LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK 109
           LE     + + RVT   + P    +L    L+   D+ SL+ +  G     + L++  +K
Sbjct: 177 LEDLAEFLNRLRVTVAHLTP----SLL--ALLDPEDVPSLRTLILGGEACPQALVDRWSK 230

Query: 110 NVPSATVIQGYGLTETSGIATM-ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 168
                 ++  YG TE +  AT    +     NIG      P     ++  D +  +P   
Sbjct: 231 PR---RLLNTYGPTEATVTATASRLTPGKPVNIGRP---LPNYTCWVLDPDLEPLVPIGA 284

Query: 169 LGEIWLRGPNMMRGYYNNEQAT--KLTIDKKGWV-------HTGDLGYFDGDGQLYVVDR 219
           +GE+ + GP + RGY N  + T  K   D             TGDL  +  DG L  + R
Sbjct: 285 VGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGR 344

Query: 220 IKELIKYKGFQV 231
             + +K +G ++
Sbjct: 345 KDDQVKIRGQRI 356

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 93.0 bits (231), Expect = 8e-22
 Identities = 64/219 (29%), Positives = 95/219 (43%), Gaps = 12/219 (5%)

Query: 19  VLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           V+PL+H  GL       L  G  ++L A  +F    F   I+    T    VP +   L 
Sbjct: 223 VMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILL 282

Query: 77  KHGLVKKFDL--SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN- 133
           +    +      ++L+ + S +APL  E   +  +   +A V+  +G+TE +   T    
Sbjct: 283 ERAATEPSGRKPAALRFIRSCSAPLTAE-TAQALQTEFAAPVVCAFGMTEATHQVTTTQI 341

Query: 134 -SFAGSRNIGSAGALAP---GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 189
                + N   +  L     G +  IV  D   PLP   +GE+WLRG  ++RGY  +   
Sbjct: 342 EGIGQTENPVVSTGLVGRSTGAQIRIVGSDGL-PLPAGAVGEVWLRGTTVVRGYLGDPTI 400

Query: 190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
           T       GW+ TGDLG     G L +  RIKELI   G
Sbjct: 401 TAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGG 438

Length = 534

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 92.4 bits (230), Expect = 9e-22
 Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 15/218 (6%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LPLFHV GL +   G L+ G+  +   +   E + +A+ +   T  + VP +   +A   
Sbjct: 176 LPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALSE-GGTLYFGVPTVWSRIAADP 234

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATMENSFA 136
              +  L   +L+ SG+A L   + +  A      T    ++ YG+TET  + T+     
Sbjct: 235 EAAR-ALRGARLLVSGSAALPVPVFDRLAA----LTGHRPVERYGMTET--LITLSTRAD 287

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLP--PNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
           G R  G  G    GVE  +V  +   P+P     +GE+ +RGP +  GY N   AT    
Sbjct: 288 GERRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAF 346

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIK-ELIKYKGFQV 231
              GW  TGD+   D DG   +V R   +LIK  G+++
Sbjct: 347 TADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRI 384

Length = 471

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 92.1 bits (229), Expect = 1e-21
 Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 17/205 (8%)

Query: 42  IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL 99
           ++   +FD E +   +E+ +VT  +  P  +  L + G  L  ++DLSSL+ + S   PL
Sbjct: 160 VVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHIASVGEPL 219

Query: 100 GKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD 159
             E++    + V    +   +  TET  I          +  GS G   PG+EA ++  D
Sbjct: 220 NPEVVV-WGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP-GSMGRPLPGIEAAVIERD 277

Query: 160 ---TQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLT-IDKKGWVHTGDLGYFDGDGQ 213
                    P Q+GE+ L+   P+M RGY  NE+    + +D  GW  TGDL Y D DG 
Sbjct: 278 GDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVD--GWYLTGDLAYRDEDGY 335

Query: 214 LYVVDRIKELIKYKG-----FQVTS 233
            + V R  ++IK  G     F+V S
Sbjct: 336 FWFVGRADDVIKTAGHLVGPFEVES 360

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 91.0 bits (226), Expect = 4e-21
 Identities = 68/243 (27%), Positives = 108/243 (44%), Gaps = 32/243 (13%)

Query: 13  DYVFLCVLPLFHVFGLA-VITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V+L   PL H+ GL+  +    L  G+C +L+ KFD +  L+AI++H VT +  VP +
Sbjct: 213 DDVYLHTAPLCHIGGLSSALA--MLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAM 270

Query: 72  ILALAKHGLVKKFDLS--SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGI 128
           +  L              S++ + +G   L   L+ +  K  P+A +   YG+TE  S +
Sbjct: 271 MADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSL 330

Query: 129 ATM-------------------ENSFAGSRNIGS-AGALAPGVEALIVSVDTQKPLPPNQ 168
             M                     S +  +  G   G  AP VE  I           ++
Sbjct: 331 TFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKI------GLDESSR 384

Query: 169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
           +G I  RGP++M GY+     T   +   GW+ TGD+G+ D  G L+++ R  + IK  G
Sbjct: 385 VGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGG 444

Query: 229 FQV 231
             V
Sbjct: 445 ENV 447

Length = 563

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 90.5 bits (225), Expect = 6e-21
 Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 43/248 (17%)

Query: 7   ETAGELDYVFLCVLPLFHV-----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHR 61
           + A   D V+L V+P FH+       +A  + G     +  +L+ K+    F   + K+R
Sbjct: 208 QCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAG-----ATFVLLEKYSARAFWGQVCKYR 262

Query: 62  VTHIWVVPPLILALA---------KHGLVKKF---DLSSLKLVGSGAAPLGKELMEECAK 109
            T    +P +I  L          +H L +     +LS  +          K+  EE   
Sbjct: 263 ATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQE----------KDAFEERFG 312

Query: 110 NVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ 168
                 ++  YG+TET  GI    +     R   S G      EA I     + PLP  +
Sbjct: 313 ----VRLLTSYGMTETIVGIIG--DRPGDKRRWPSIGRPGFCYEAEIRDDHNR-PLPAGE 365

Query: 169 LGEIWLRG---PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
           +GEI ++G     + + YY + +AT   ++  GW+HTGD GY D +G  Y VDR   +IK
Sbjct: 366 IGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK 425

Query: 226 YKGFQVTS 233
             G  V+ 
Sbjct: 426 RGGENVSC 433

Length = 517

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 89.9 bits (223), Expect = 1e-20
 Identities = 57/143 (39%), Positives = 75/143 (52%), Gaps = 13/143 (9%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM----ENSFAGSRNIGSA 144
           L+L+ SG APL  E+ EE  +    A V+QGYGLTET G  T+    E        +G+ 
Sbjct: 385 LRLLISGGAPLSTEI-EEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCM-----LGTV 438

Query: 145 GALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHT 202
           GA A   E  +  V      PL     GEI +RG  +  GYY N + T+  + K GW HT
Sbjct: 439 GAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHT 497

Query: 203 GDLGYFDGDGQLYVVDRIKELIK 225
           GD+G    +G L ++DR K LIK
Sbjct: 498 GDIGEILPNGVLKIIDRKKNLIK 520

Length = 660

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 87.3 bits (217), Expect = 3e-20
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 19/225 (8%)

Query: 6   QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVT 63
           Q  AG     FL   PL H  G  +     L  G  ++L+   KFD +   R +EKHRV 
Sbjct: 51  QVAAGGAGTRFLPACPLMHGAGQWL-ALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVN 109

Query: 64  HIWVV-----PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ 118
            + +V      PL+ AL   G   ++DLSSL+ + S  A    E+ +   + +P+  ++ 
Sbjct: 110 TLVIVGDAFARPLLEALEAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVD 166

Query: 119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWL-RGP 177
             G +ET G  +   S + +    + G    G + +++  D    +PP      W+ RG 
Sbjct: 167 ALGASETGGGGS---SVSRAGGASATGKFELGPDTVVLDEDGS-EVPPGSGEVGWIARGG 222

Query: 178 NMMRGYYNNE---QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 219
            +  GYY +      T   ID   +   GD    + DG + ++ R
Sbjct: 223 RVPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLGR 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 87.1 bits (216), Expect = 9e-20
 Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           GQ   G+ + +    KFD +  L  IEK+ VT  +  PP I        + K+DLSSL+ 
Sbjct: 247 GQWIAGAAVFVYDYDKFDPKNLLEKIEKYGVT-TFCAPPTIYRFLIKEDLSKYDLSSLRY 305

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS-GIATMENSFAGSRNIGSAGALAPG 150
             +   PL  E+     K      +++G+G TET+  IAT           GS G  +PG
Sbjct: 306 CTTAGEPLNPEVFNT-FKEKTGIKLMEGFGQTETTLTIATFPWMEPKP---GSMGKPSPG 361

Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPN-----MMRGYYNNEQATKLTIDKKGWVHTGDL 205
            +  I+  D  K     + GEI +R  +     +  GYY + + T       G+ HTGD 
Sbjct: 362 YDIDIIDPDG-KSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVW-HDGYYHTGDT 419

Query: 206 GYFDGDGQLYVVDRIKELIKYKGFQV 231
            + D DG L+ V R  +LIK  G+++
Sbjct: 420 AWMDEDGYLWFVGRADDLIKSSGYRI 445

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 87.2 bits (216), Expect = 9e-20
 Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 17/222 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCII-----LMAKFDLEMFLRAIEKHRVTHIWV 67
           D V +  LP FH +G    T   L  G  ++     L  K  +EM    I++ +VT +  
Sbjct: 224 DDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEM----IDEAKVTFLGS 279

Query: 68  VPPL---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE 124
            P     IL  AK    ++  L SL+ V  G       L +E  K  P   + QGYG TE
Sbjct: 280 TPVFFDYILKTAKK---QESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTE 336

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYY 184
            S + T+ N+    ++    G    G++ LIVS +T+ P+   + G +  RG ++  GY 
Sbjct: 337 CSPVITI-NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYL 395

Query: 185 -NNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
             +     + +  + W  TGDLGY D  G+L++  R+   +K
Sbjct: 396 GEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVK 437

Length = 539

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 63/220 (28%), Positives = 100/220 (45%), Gaps = 10/220 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
                  LF  +GL       L  G+  +L+      E  L  + +HR T ++ VP L  
Sbjct: 135 RIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYR 194

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIATM 131
           AL + G        S++L  S    L   L E  A+   +    ++ G G TE   I  +
Sbjct: 195 ALLESGAGSAPLFRSVRLCVSAGEALPAGLAERWAEATGIE---ILDGIGSTEVLHI-FI 250

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
            N    +R  G+ G   PG EA +V  ++ + +P   +G++W+RGP++  GY+N  + T+
Sbjct: 251 SNRPGAAR-PGTTGRPVPGYEARLVD-ESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQ 308

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            T+ + GW+ TGD    D DG      R  ++IK  G  V
Sbjct: 309 RTL-RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWV 347

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 85.3 bits (211), Expect = 4e-19
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 17/145 (11%)

Query: 89  LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENSFAGSRNIGSAGA 146
           ++L+ SGAAPL + + EE  +    + + QGYGLTE+ G    ++ N F+    +G+ G 
Sbjct: 385 VRLLLSGAAPLPRHV-EEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFS---MVGTVGV 440

Query: 147 LAPGVEALIVSV-----DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK-LTIDKKGWV 200
               +EA + SV     D    +P    GEI LRG  +  GY+  +  T+ + ID  GW 
Sbjct: 441 PMTTIEARLESVPEMGYDALSDVPR---GEICLRGNTLFSGYHKRQDLTEEVLID--GWF 495

Query: 201 HTGDLGYFDGDGQLYVVDRIKELIK 225
           HTGD+G +  +G + ++DR K + K
Sbjct: 496 HTGDIGEWQPNGAMKIIDRKKNIFK 520

Length = 660

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 84.7 bits (210), Expect = 6e-19
 Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 47/246 (19%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRA-------IEKHRVTHIWVVPPLI 72
           LPLFH  G+       +  G+ ++ +   D   FLR        I K+R T +   P   
Sbjct: 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMD---FLRDPLLWAELISKYRGT-MTAAPNFA 256

Query: 73  LALAKHGLVKK-----FDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGL 122
            AL    L ++     FDLSSL+   +GA P+    +E+         +    ++  YG+
Sbjct: 257 YALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGM 316

Query: 123 TETSGIATMENSFAG------------------------SRNIGSAGALAPGVEALIVSV 158
            E +   +     AG                        +R + + G   PG+E  +V  
Sbjct: 317 AEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDE 376

Query: 159 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVD 218
           D Q  LPP  +G I LRG ++  GY           D  GW+ TGDLGY   +G++ V  
Sbjct: 377 DGQ-VLPPRGVGVIELRGESVTPGYL-TMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCG 434

Query: 219 RIKELI 224
           R+K++I
Sbjct: 435 RVKDVI 440

Length = 545

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 84.7 bits (210), Expect = 7e-19
 Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 4/212 (1%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V L   P+ H  G        +  G+  +L   +D       I    VT      P +
Sbjct: 238 DDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFL 297

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +        +SSL+      AP+   L+E  A+    A ++  +G+TE   +   +
Sbjct: 298 TDLTRAVKESGRPVSSLRTFLCAGAPIPGALVER-ARAALGAKIVSAWGMTENGAVTLTK 356

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                 R   + G   PGVE  +V  D   PLP  Q+G + +RG +   GY    Q    
Sbjct: 357 LDDPDERASTTDGCPLPGVEVRVVDADGA-PLPAGQIGRLQVRGCSNFGGYLKRPQLNG- 414

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
             D  GW  TGDL   D DG + +  R K++I
Sbjct: 415 -TDADGWFDTGDLARIDADGYIRISGRSKDVI 445

Length = 547

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 84.3 bits (209), Expect = 8e-19
 Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 6/211 (2%)

Query: 22  LFHVFGLAVITCGQLQKGSCIILMAKFDL-EMFLRAIEKHRVTHIWVVPPLILALAKHGL 80
           LF  +GL       L  G+  +LM +    +     IE+++ T  + VP L  A+     
Sbjct: 212 LFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPE 271

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRN 140
             + DLSSL+L  S    L  E+     K +    ++ G G TE   I    ++  G+  
Sbjct: 272 KPERDLSSLRLCVSAGEALPAEIGYRW-KELFGLEILDGIGSTEMLHIFL--SNRPGAVK 328

Query: 141 IGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV 200
            G++G   PG E  +V  D +  +   ++GE+W+RG +   GY+N  + T+ T     W 
Sbjct: 329 YGTSGKPVPGYEVKLVDEDGE-EVADGEIGELWVRGDSSAAGYWNRREKTRETF-VGEWT 386

Query: 201 HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TGD  Y D DG  +   R  +++K  G  V
Sbjct: 387 RTGDKYYRDEDGYYWYCGRSDDMLKVSGIWV 417

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 40/175 (22%)

Query: 84  FDLSSLKLVGSGAAPLGKELMEECAKNVPSA-----TVIQGYGLTETSGIATMENSFAG- 137
            DLS  ++ G GA  +  +++ + A+    A       +  YGL E    AT+  SF+  
Sbjct: 296 LDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAE----ATLAVSFSPL 351

Query: 138 -----------SRNIGSAGALAPGVEAL---------------IVSV--DTQKPLPPNQL 169
                       R      A+APG E                  + +  +   PLP   +
Sbjct: 352 GSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVV 411

Query: 170 GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           G I +RGP++M GY+ +E++    +   GW+ TGDLGY   DG LY+  R K+LI
Sbjct: 412 GHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYLL-DGYLYITGRAKDLI 464

Length = 579

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 83.7 bits (207), Expect = 2e-18
 Identities = 66/233 (28%), Positives = 97/233 (41%), Gaps = 30/233 (12%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV---P 69
           D V    LPLFH   L       L  G+  +L  +F    F  A+ +H  T  +++    
Sbjct: 221 DDVLYTTLPLFHTNALNAFFQALLA-GATYVLEPRFSASGFWPAVRRHGATVTYLLGAMV 279

Query: 70  PLILALAK------HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLT 123
            ++L+         H +        + L     A L     E          ++ GYG T
Sbjct: 280 SILLSQPARESDRAHRV-------RVALGPGVPAALHAAFRERFG-----VDLLDGYGST 327

Query: 124 ETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN---MM 180
           ET+ +  +     GS+  GS G LAPG EA +V    Q  LP  + GE+ LR        
Sbjct: 328 ETNFVIAVT---HGSQRPGSMGRLAPGFEARVVDEHDQ-ELPDGEPGELLLRADEPFAFA 383

Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
            GY+   + T +   +  W HTGD    D DG    VDRIK+ I+ +G  ++S
Sbjct: 384 TGYFGMPEKT-VEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISS 435

Length = 542

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 17/189 (8%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAK---HG-LVKKFDLSSLKLVGSGAAPLGKELME--E 106
           + R IE++ V  ++  P  I A+ K    G  +KK+DLSSL+ +      L    +E  E
Sbjct: 307 YWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE 366

Query: 107 CAKNVPSATVIQGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL 164
               VP   VI  +  TET     A            GS G   PG +  ++  +T + L
Sbjct: 367 KTLGVP---VIDHWWQTETGWPITANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEEL 422

Query: 165 PPNQLGEIWLRGP---NMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDR 219
            P +LG I ++ P     +   + +++  K        G+  TGD GY D DG L+V+ R
Sbjct: 423 GPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGR 482

Query: 220 IKELIKYKG 228
             ++I   G
Sbjct: 483 TDDVINVAG 491

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 80.7 bits (200), Expect = 1e-17
 Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 22/213 (10%)

Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVV--- 68
                 PL H  G  A      L  G  ++L    +FD +   R IE+ +V  I +V   
Sbjct: 221 RRFPAPPLMHGAGQWAAFAA--LFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDA 278

Query: 69  --PPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
              PL+ AL   G    +DLSSL  + SG A     + E   + +P+  +    G +ET 
Sbjct: 279 MARPLLDALEARG---PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETG 335

Query: 127 GIATMENSFAGSRNIGSAGA-LAPGVEALIVSVDTQKPLPPNQLGEIWL-RGPNMMRGYY 184
              +          + + G     G   +++  D   P+ P      W+ R  ++  GYY
Sbjct: 336 FGGS---GTVAKGAVHTGGPRFTIGPRTVVLDEDGN-PVEPGSGEIGWIARRGHIPLGYY 391

Query: 185 NNEQATKLT---IDKKGWVHTGDLGYFDGDGQL 214
            + + T  T   ID   +   GD    + DG +
Sbjct: 392 KDPEKTAETFPTIDGVRYAIPGDRARVEADGTI 424

Length = 533

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 69/232 (29%), Positives = 98/232 (42%), Gaps = 36/232 (15%)

Query: 15  VFLCVLPLFHVFG------LAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH  G      +A             + + K D ++    I +H VTH    
Sbjct: 225 VYLWTLPMFHCNGWCFPWTVAAR-------AGTNVCLRKVDPKLIFDLIREHGVTHYCGA 277

Query: 69  PPLILAL--AKHGLVKKFDLSSLKLVGSGAAPLGK--ELMEECAKNVPSATVIQGYGLTE 124
           P ++ AL  A        D     +V  GAAP       MEE   ++        YGLTE
Sbjct: 278 PIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKMEEIGFDL-----THVYGLTE 331

Query: 125 TSGIATMENSFAG---------SRNIGSAGALAPGVEALIV-SVDTQKPLPPN--QLGEI 172
           T G AT+               ++     G   P  E + V   DT +P+P +   +GEI
Sbjct: 332 TYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEI 391

Query: 173 WLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
             RG  +M+GY  N +AT+      GW HTGDL     DG + + DR K++I
Sbjct: 392 MFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDII 442

Length = 545

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 79.8 bits (197), Expect = 3e-17
 Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 20/217 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKG---SCIILMA-KFDLEMFLRAIEKHRVTHIWVVPP 70
             + V P+FH +G +     QL      +C I+   +FD E  L  I++HR T + VVP 
Sbjct: 239 PTVIVAPMFHAWGFS-----QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPV 293

Query: 71  L---ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG 127
           +   I+ L       ++   SL+   +  + +  +++           +   Y  TE   
Sbjct: 294 MFDRIMDLPAEVR-NRYSGRSLRFAAASGSRMRPDVVIAFMDQFGDV-IYNNYNATEAGM 351

Query: 128 IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 187
           IAT            +AG  A G E  I+  D ++ +P  ++G I++R      GY +  
Sbjct: 352 IAT-ATPADLRAAPDTAGRPAEGTEIRILDQDFRE-VPTGEVGTIFVRNDTQFDGYTSG- 408

Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
            +TK   D  G++ +GD+GY D +G+L+VV R  E+I
Sbjct: 409 -STKDFHD--GFMASGDVGYLDENGRLFVVGRDDEMI 442

Length = 537

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 79.2 bits (196), Expect = 4e-17
 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 31/241 (12%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
           V    LPL+H   L V     L  G+ + L  KF    F   + ++  T    V  L   
Sbjct: 124 VLYLCLPLYHSNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRY 183

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +L   +    +   L   K++G+G  P   ++ +E  +      +++ YG TE  G    
Sbjct: 184 LLNQPEKPDDRDHPLR--KIIGNGLRP---DIWDEFKERFGVPRIVEFYGSTE--GNVGF 236

Query: 132 ENSFAGSRNIGSAGALAPGVEALI-VSVDTQKPL----------PPNQLGEIWLRG--PN 178
            N F      G+ G L P   A++   V+T++P+          PP ++G +       N
Sbjct: 237 INLF---NKPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRN 293

Query: 179 MMRGYYNNEQAT-KLTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
              GY ++E    K+  D  KKG  + +TGDL   DG G  Y VDR+ +  ++KG  V++
Sbjct: 294 PFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVST 353

Query: 234 N 234
            
Sbjct: 354 T 354

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 78.9 bits (195), Expect = 5e-17
 Identities = 64/239 (26%), Positives = 93/239 (38%), Gaps = 53/239 (22%)

Query: 8   TAGELDYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT 63
           T  ++ Y     +PLFH    + G A      +  G+ + L AKF    FL  + ++  T
Sbjct: 189 TRDDVCY---VSMPLFHSNAVMAGWAPA----VASGAAVALPAKFSASGFLDDVRRYGAT 241

Query: 64  HI-WVVPPL--ILALAKHG------LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA 114
           +  +V  PL  ILA  +        L   F        G+ A+P     + E ++     
Sbjct: 242 YFNYVGKPLAYILATPERPDDADNPLRVAF--------GNEASP---RDIAEFSRRF-GC 289

Query: 115 TVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL----- 169
            V  GYG +E + I   E         GS G  APGV   I + +T       +      
Sbjct: 290 QVEDGYGSSEGAVIVVREPGTPP----GSIGRGAPGVA--IYNPETLTECAVARFDAHGA 343

Query: 170 --------GEIW-LRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 219
                   GE+    G     GYYNN +AT   + + G   +GDL Y D DG +Y   R
Sbjct: 344 LLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGR 401

Length = 540

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 67/231 (29%), Positives = 92/231 (39%), Gaps = 45/231 (19%)

Query: 13  DYVFLCVLPLFH----VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHI-WV 67
           D V    +PLFH    + G AV        G+ I L  KF    FL  + ++  T+  +V
Sbjct: 193 DDVCYVSMPLFHSNAVMAGWAVALAA----GASIALRRKFSASGFLPDVRRYGATYANYV 248

Query: 68  VPPLILALAKHGLVKKFDLSSLKLV-GSGAAPLGKELMEE---CAKNVPSATVIQGYGLT 123
             PL   LA        D + L++V G+  AP           C        V+ G+G T
Sbjct: 249 GKPLSYVLATPERPDDAD-NPLRIVYGNEGAPGDIARFARRFGC-------VVVDGFGST 300

Query: 124 ETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQL------------ 169
           E  G+A        + +   G+ G L PGV   IV  DT    PP +             
Sbjct: 301 EG-GVA-----ITRTPDTPPGALGPLPPGVA--IVDPDTGTECPPAEDADGRLLNADEAI 352

Query: 170 GEIW-LRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR 219
           GE+    GP    GYYN+ +A    + + G   +GDL Y D DG  Y   R
Sbjct: 353 GELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGR 402

Length = 529

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 76.7 bits (189), Expect = 3e-16
 Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 12/191 (6%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG-----LVKKFDLSSLKLVGSGAAPLGKELMEEC 107
               IEKH+VTH   +P  I  L K       +  K+DLS+LK +  G   + +E + E 
Sbjct: 341 LWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVI-EESIPEY 399

Query: 108 AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167
            +N       +GYG TE  GI  +      +    + G  +  ++  I+S D  K L  N
Sbjct: 400 IENKLKIKSSRGYGQTE-IGITYLYCYGHINIPYNATGVPSIFIKPSILSEDG-KELNVN 457

Query: 168 QLGEIWLR---GPNMMRGYYNNEQATKLTIDK-KGWVHTGDLGYFDGDGQLYVVDRIKEL 223
           ++GE+  +    P+    +Y N++  K    K  G+ ++GDLG+ D +G   +V R  + 
Sbjct: 458 EIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQ 517

Query: 224 IKYKGFQVTSN 234
           IK  G +V  N
Sbjct: 518 IKISGNKVQLN 528

Length = 647

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 76.0 bits (187), Expect = 5e-16
 Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 17/223 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D VF+   PL   FGL  +    L+ G+  +L+ +    + L+AI++HR T ++  P   
Sbjct: 189 DDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTAY 248

Query: 73  LALAKHGLVKKFDLSSL-KLVGSGA---APLGKELMEECAKNVPSATVIQGYGLTETSGI 128
            A+     VK FD+SSL K V +G    A + ++  E     +     I G G TE   I
Sbjct: 249 RAML--IKVKAFDISSLRKCVSAGETLPAKVWQDWYERTGLKI-----IDGIGATEMLHI 301

Query: 129 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 188
               N    +   G+ G   PG EA IV  D    +P  + G + +RGP   R  Y +++
Sbjct: 302 FISAN--EENAKPGATGKPVPGYEARIVD-DQGNEVPRGEAGRLAVRGPTGCR--YLDDE 356

Query: 189 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             +  + + GW  TGD+   D DG  + V R  ++I   G+ +
Sbjct: 357 RQQEYV-RDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNI 398

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 76.4 bits (188), Expect = 5e-16
 Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 44/255 (17%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQ---KGSCIILMA-KFDLEMFLR---AIEKHRVTHI 65
           D V +  LPL+H  GL     G LQ    G   +LM+  + LE  LR   AI ++  T I
Sbjct: 209 DDVIVSWLPLYHDMGL---IGGLLQPIFSGVPCVLMSPAYFLERPLRWLEAISEYGGT-I 264

Query: 66  WVVPPLILALAKH----GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA-----TV 116
              P     L         +++ DLS  ++  SG+ P+ ++ +E  A+   +      + 
Sbjct: 265 SGGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSF 324

Query: 117 IQGYGLTETS----------GIATME-NSFAGSRN---------IGSAGALAPGVEALIV 156
              YGL E +          GI  +E ++ A +RN         + S G   PG   LIV
Sbjct: 325 FASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIV 384

Query: 157 SVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQ 213
              + + L  N++GEIW  GP++  GY+ N +A+  T    D + W+ TGDLG F  DG+
Sbjct: 385 DPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLG-FLRDGE 443

Query: 214 LYVVDRIKELIKYKG 228
           L+V  R+K+++  +G
Sbjct: 444 LFVTGRLKDMLIVRG 458

Length = 4334

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 76.2 bits (187), Expect = 6e-16
 Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 16/160 (10%)

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--I 128
           L+    K GL       +++++ SGAAPL   + E   + V    V+QGYGLTE+     
Sbjct: 375 LVFNKVKQGLG-----GNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTF 428

Query: 129 ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNMMRGYYNN 186
            ++ +       +G+ G   P V+  + SV   +   L     GEI +RG  +  GYY  
Sbjct: 429 VSLPDELD---MLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKR 485

Query: 187 EQATK-LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
           E  TK + ID  GW+HTGD+G +  +G + ++DR K + K
Sbjct: 486 EDLTKEVLID--GWLHTGDVGEWQPNGSMKIIDRKKNIFK 523

Length = 666

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 75.6 bits (186), Expect = 8e-16
 Identities = 61/228 (26%), Positives = 99/228 (43%), Gaps = 17/228 (7%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L VLPL   +G   +T      G+ ++L         L+A+EKH +T +  VPPL   LA
Sbjct: 208 LAVLPLSFDYGFNQLTTAFYV-GATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLA 266

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA 136
           +     +    SL+ + +    + +  +      +P+A +   YGLTE      +     
Sbjct: 267 QLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEV 325

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK----- 191
             R   S G   P  E L++  D  +  P  + GE+  RG  +  GY+N+ + T      
Sbjct: 326 DRRP-DSIGKAIPNAEVLVLREDGSECAP-GEEGELVHRGALVAMGYWNDPEKTAERFRP 383

Query: 192 -------LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 232
                  L + +   V +GD    D +G LY V R  E+IK  G++V+
Sbjct: 384 LPPFPGELHLPELA-VWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVS 430

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 37/100 (37%), Positives = 49/100 (49%), Gaps = 20/100 (20%)

Query: 143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI-------- 194
           SAG +     A+IV  +T   LP  Q+GEIWL G N+  GY+   + T  T         
Sbjct: 392 SAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRL 451

Query: 195 ---------DKKGWVHTGDLG-YFDGDGQLYVVDRIKELI 224
                    D   WV TGD G YFDG+  LY+  R+K+L+
Sbjct: 452 SESHAEGAPDDALWVRTGDYGVYFDGE--LYITGRVKDLV 489

Length = 631

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 74.9 bits (184), Expect = 1e-15
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 14/215 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +FD    L+ IE+ RVT ++  P  + A
Sbjct: 197 VVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDA 256

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           LA         L SL+ V    A +   ++E   +++P   V   YG TE      M + 
Sbjct: 257 LAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKV-NIYGTTEAMNSLYMRDP 315

Query: 135 FAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWL-RGPNMMRGYYNNEQA 189
             G+        + PG   E  IV +     + LP  + GE+ +        GY N  QA
Sbjct: 316 RTGTE-------MRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQA 368

Query: 190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           T   + + GW  T D+   D  G + ++ R+ ++I
Sbjct: 369 TAEKL-QDGWYRTSDVAVVDPSGTVRILGRVDDMI 402

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 74.7 bits (183), Expect = 2e-15
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 30/238 (12%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V+L  LP+FH  G    T G   +G   + M         + IE H VTH+  VP +   
Sbjct: 229 VYLWTLPMFHCNGWT-FTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNI 287

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA----- 129
           L K   +     S    V +G +P    L+++  +      V+  YGLTE +G       
Sbjct: 288 LLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR--LGFQVMHAYGLTEATGPVLFCEW 345

Query: 130 -----------TME-NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLR 175
                       ME  +  G   +G A       +  + + +TQ+ +P +   +GEI ++
Sbjct: 346 QDEWNRLPENQQMELKARQGVSILGLA-------DVDVKNKETQESVPRDGKTMGEIVIK 398

Query: 176 GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
           G ++M+GY  N +AT     K GW++TGD+G    DG + + DR K++I   G  ++S
Sbjct: 399 GSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISS 455

Length = 579

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 44/191 (23%), Positives = 70/191 (36%), Gaps = 14/191 (7%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D    L  +E   +T + +VP L+  L    L          L+ + SG   L   L++ 
Sbjct: 445 DPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQR 504

Query: 107 CAKNVPSA-TVIQGYGLTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQK 162
             +    A  ++  YG TE +  A              IG         +  I+     +
Sbjct: 505 LLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRP---VANTQLYILD-QGLR 560

Query: 163 PLPPNQLGEIWLRGPNMMRGYYNNEQAT--KLTIDKKGWVHTGDLGYFDGDGQLYVVDRI 220
           PLP    GE+++ G  +  GY N    T  +          TGDL     DG L  + R 
Sbjct: 561 PLPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL--RLYRTGDLARPLADGALEYLGRK 618

Query: 221 KELIKYKGFQV 231
              +K +GF++
Sbjct: 619 DSQVKIRGFRI 629

Length = 642

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 58/190 (30%), Positives = 82/190 (43%), Gaps = 20/190 (10%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKN 110
           F   IEKH+VT  +  P  I AL + G   VKK DLSSL+L+GS   P+  E      K 
Sbjct: 322 FWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKV 381

Query: 111 V--PSATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPP 166
           V      ++  +  TET GI  M     G+     GSA     G+E  +V  +   P+  
Sbjct: 382 VGKERCPIVDTWWQTETGGI--MITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEG 438

Query: 167 NQLGEI------WLRGPNMMRGYYNNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVD 218
              G        W   P M+R  Y + +    T      G+  TGD    D DG +++  
Sbjct: 439 PGEGGYLVIKQPW---PGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITG 495

Query: 219 RIKELIKYKG 228
           R+ ++I   G
Sbjct: 496 RVDDVINVSG 505

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 50/145 (34%), Positives = 75/145 (51%), Gaps = 22/145 (15%)

Query: 94  SGAAPLG---KELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG 150
           SG APL    +  +  C      A + QGYGLTET   AT   S     ++G  G   P 
Sbjct: 427 SGGAPLSGDTQRFINICL----GAPIGQGYGLTETCAGATF--SEWDDTSVGRVGPPLPC 480

Query: 151 VEALIVSVD------TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK--LTIDKKG--WV 200
               +VS +      + KP+P    GEI + GP++  GY+ N++ T     +D++G  W 
Sbjct: 481 CYVKLVSWEEGGYLISDKPMPR---GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWF 537

Query: 201 HTGDLGYFDGDGQLYVVDRIKELIK 225
           +TGD+G F  DG L ++DR K+++K
Sbjct: 538 YTGDIGQFHPDGCLEIIDRKKDIVK 562

Length = 696

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 70.2 bits (172), Expect = 5e-14
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 19/104 (18%)

Query: 143 SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI-------- 194
           S G +A    A+IV  DT   LP  ++GEIWL G N+ RGY+   + T+ T         
Sbjct: 403 SCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRL 462

Query: 195 ----------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
                     D   W+ TGDLG +  DG+LY+  RI +LI   G
Sbjct: 463 AEGSHADGAADDGTWLRTGDLGVYL-DGELYITGRIADLIVIDG 505

Length = 612

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 69.8 bits (171), Expect = 6e-14
 Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 9/212 (4%)

Query: 26  FGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-VKK 83
           +GL     G L  G   + +   F  E     +E+  VT+    P     L   G     
Sbjct: 142 YGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAA 201

Query: 84  FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGS 143
                L++  S   PL  E++     N+   T+   YG TET       ++ A     GS
Sbjct: 202 RIKLKLRVASSAGEPLNPEVVRWFQANL-GVTIHDHYGQTETGMPVGNHHALAHEVRAGS 260

Query: 144 AGALAPGVEALIVSVDTQKPLPPNQLGEIWLR----GPNMMRGYYNNEQATKLTIDKKGW 199
            G   PG    ++  D Q PL   + G++ +           GY+++ + T   I    W
Sbjct: 261 MGLPLPGYRIAVLDDDGQ-PLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAG-RW 318

Query: 200 VHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
             TGDL   D DG  + + R  ++I   G+++
Sbjct: 319 YVTGDLVERDEDGYFWFIGRADDVIISAGYRI 350

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 69.8 bits (171), Expect = 7e-14
 Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 15/201 (7%)

Query: 39  GSCII--LMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+C+    + +FD ++ L+ + K+ +T     P +   L +  L   +   SL+   +G 
Sbjct: 242 GACVFVHHLPRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQDL-TSYKFKSLRHCVTGG 300

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSR-NIGSAGALAPGVEALI 155
            PL  E++E+  K      + +GYG TET  I     +F G +   GS G  +P  +  I
Sbjct: 301 EPLNPEVLEQW-KAQTGLDLYEGYGQTETGLICA---NFKGMKIKPGSMGKASPPYDVQI 356

Query: 156 VSVDTQKPLPPNQLGEIWLR-GPN----MMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG 210
           +  D    LPP   G+I +R  P     +   Y +N + T  TI    ++ TGD G  D 
Sbjct: 357 ID-DNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGIMDE 414

Query: 211 DGQLYVVDRIKELIKYKGFQV 231
           DG  + V R  ++I   G+++
Sbjct: 415 DGYFWFVGRADDVINSSGYRI 435

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 69.6 bits (170), Expect = 8e-14
 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 4/210 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L   P+ H  G        L   +  +L   ++       I +  VT      P +  
Sbjct: 238 VILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTD 297

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +        + SL       AP+   L+E  A  +  A ++  +G+TE   +   E  
Sbjct: 298 LCRAVKESGAPVPSLFTFLCAGAPIPGILVER-AWELLGALIVSAWGMTENGAVTVTEPD 356

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
            A  +   + G   PGVE  ++  +  K L   + G + +RG +   GY         + 
Sbjct: 357 DALEKASTTDGRPLPGVEVKVIDANGAK-LSQGETGRLLVRGCSNFGGYLKRPHLN--ST 413

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           D +GW  TGDL + D +G + +  R K++I
Sbjct: 414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVI 443

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 69.5 bits (170), Expect = 9e-14
 Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 41/244 (16%)

Query: 15  VFLCVLPLFH------VFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVV 68
           V+L  LP+FH       + LA + CG        I + +   +    AI  + VTH +  
Sbjct: 238 VYLWTLPMFHCNGWCFTWTLAAL-CGT------NICLRQVTAKAIYSAIANYGVTH-FCA 289

Query: 69  PPLILALAKHGLVKKFDLSSLKLVG---SGAAPLGKELMEECAKNVPSATVIQGYGLTET 125
            P++L    +    +  L   ++V    +GAAP    L    A +     V   YGL+ET
Sbjct: 290 APVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLF---AMSEKGFRVTHTYGLSET 346

Query: 126 SGIATM-------------ENSFAGSRNIGSAGALAPGVEAL-IVSVDTQKPLPPN--QL 169
            G +T+             E +   +R     G    G+E L +V   T KP+P +   +
Sbjct: 347 YGPSTVCAWKPEWDSLPPEEQARLNARQ----GVRYIGLEGLDVVDTKTMKPVPADGKTM 402

Query: 170 GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 229
           GEI +RG  +M+GY  N +A +      GW H+GDLG    DG + + DR K++I   G 
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGE 461

Query: 230 QVTS 233
            ++S
Sbjct: 462 NISS 465

Length = 567

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 52/182 (28%), Positives = 82/182 (45%), Gaps = 13/182 (7%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--P 112
           +EK++VT  +  P  I  L + G    KK DLSSL+L+GS   P+  E      + +   
Sbjct: 315 VEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDLSSLRLLGSVGEPINPEAWMWYYEVIGKE 374

Query: 113 SATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDTQKPLPPNQLG 170
              ++  +  TET G   M     G+  +  GSA    PGVE  IV  +    +     G
Sbjct: 375 RCPIVDTWWQTETGGH--MITPLPGATPLKPGSATRPFPGVEPAIVDEEG-NEVEGGVEG 431

Query: 171 EIWLRG--PNMMRGYYNNEQATKLTIDKK--GWVHTGDLGYFDGDGQLYVVDRIKELIKY 226
            + ++   P M+R  Y + +    T   K  G+  TGD    D DG  +++ R+ ++I  
Sbjct: 432 YLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYFTGDGARRDEDGYYWILGRVDDVINV 491

Query: 227 KG 228
            G
Sbjct: 492 SG 493

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 68.2 bits (167), Expect = 3e-13
 Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 14/193 (7%)

Query: 39  GSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
           G+ +  +   +FD   +L A+EK  VT     PP +  +     + ++D+   + V +G 
Sbjct: 151 GATVFGINYPRFDARRYLGALEKFGVTTF-CAPPTVWRMFIQQDLAQYDVRLREAVSAGE 209

Query: 97  APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIV 156
            PL  E++E   K     T+  GYG TET+  A + NS       GS G   PG    +V
Sbjct: 210 -PLNPEVIER-VKKAWGLTIRDGYGQTETT--AMIGNSPGQKVKPGSMGRPLPGYR--VV 263

Query: 157 SVDTQKPLPPNQLGEIWL----RGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG 212
            +D +    P   GEI L    R   +M GY  + + T       G+  TGD  Y D DG
Sbjct: 264 LLDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRG-GYYRTGDKAYRDEDG 322

Query: 213 QLYVVDRIKELIK 225
            L+ V R  ++ K
Sbjct: 323 YLWFVGRADDVFK 335

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 67.8 bits (165), Expect = 3e-13
 Identities = 62/235 (26%), Positives = 100/235 (42%), Gaps = 24/235 (10%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI-- 72
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP +   
Sbjct: 198 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 257

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM- 131
           LA        +      +LV  G+A      +           V QGYGLTETS +    
Sbjct: 258 LADYLESTGHRLKT-LRRLVVGGSAA--PRSLIAR-FERMGVEVRQGYGLTETSPVVVQN 313

Query: 132 -----------ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPN 178
                      E        + +   L   +  L V+ +  +P+P +   LGE+ L+GP 
Sbjct: 314 FVKSHLESLSEEEKL----TLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPW 369

Query: 179 MMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
           +  GYY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  ++S
Sbjct: 370 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 424

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 61/188 (32%), Positives = 90/188 (47%), Gaps = 19/188 (10%)

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKE----LMEE 106
             R +E+H+VTH+ + P LI AL  HG   V+  DLSSL+++GS   P   E    L E 
Sbjct: 185 LWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFER 244

Query: 107 -CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
                 P   +I   G TE SG   + N         S    +PG++A +V  D + P+ 
Sbjct: 245 VGGGRAP---IINYSGGTEISG-GILGNVPIRPIKPCSFNGPSPGMDADVVDEDGR-PVR 299

Query: 166 PNQLGEIWLRGP--NMMRGYYNNEQ---ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI 220
             ++GE+ +R P   M RG++ + +    T  +     WVH GD    D DG  Y++ R 
Sbjct: 300 G-EVGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVH-GDWALVDEDGYWYILGRS 357

Query: 221 KELIKYKG 228
            + IK  G
Sbjct: 358 DDTIKVAG 365

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAP 98
           G  + LM KF     L  +E   ++ ++ VP ++ +L K     +   + +K++ SGA  
Sbjct: 209 GQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYK---ENRVIENKMKIISSGAK- 264

Query: 99  LGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV 158
              E  E+     P A + + YG +E S +  + +     R   S G     V+  I + 
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDE-ESERRPNSVGRPFHNVQVRICNE 323

Query: 159 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVD 218
              + +   ++G ++++ P    GY          ++  GW+   D+GY D +G +Y+V 
Sbjct: 324 A-GEEVQKGEIGTVYVKSPQFFMGYII-GGVLARELNADGWMTVRDVGYEDEEGFIYIVG 381

Query: 219 RIKELIKYKGFQV 231
           R K +I + G  +
Sbjct: 382 REKNMILFGGINI 394

Length = 487

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 67/238 (28%), Positives = 101/238 (42%), Gaps = 54/238 (22%)

Query: 13   DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
            D VF   LP+FH FGL   T G       ++L     +++FL         H  ++P LI
Sbjct: 835  DKVF-NALPVFHSFGL---TGG-------LVLPLLSGVKVFLYP----SPLHYRIIPELI 879

Query: 73   L-----------------ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT 115
                              A   H     +D  SL+ V +GA  + +E  +   +      
Sbjct: 880  YDTNATILFGTDTFLNGYARYAHP----YDFRSLRYVFAGAEKVKEETRQTWMEKF-GIR 934

Query: 116  VIQGYGLTETS-GIAT---MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP-NQLG 170
            +++GYG+TET+  IA    M N        G+ G L PG+E  +       P+P  ++ G
Sbjct: 935  ILEGYGVTETAPVIALNTPMHNKA------GTVGRLLPGIEYRLE------PVPGIDEGG 982

Query: 171  EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
             +++RGPN+M GY   E    L     GW  TGD+   D +G + +  R K   K  G
Sbjct: 983  RLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAG 1040

Length = 1140

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 155 IVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK------G-----WVHTG 203
           IV  DT    P   +GEIW+ G N+  GY+   + T+ T          G     W+ TG
Sbjct: 383 IVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG 442

Query: 204 DLGYFDGDGQLYVVDRIKELI 224
           DLG+   +G+L++V RIK+L+
Sbjct: 443 DLGFIS-EGELFIVGRIKDLL 462

Length = 578

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 23/221 (10%)

Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP-LIL 73
           +LC LP  H + ++     G    G  ++L       +    IEKH+V    +VPP + L
Sbjct: 226 YLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSL 285

Query: 74  ALAKHGLVK-KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVI-----QGYGLTETSG 127
            L        +  L+SLKL+  G A L + L    A+ +P+   +     Q +G+ E  G
Sbjct: 286 WLQAIAEGGSRAQLASLKLLQVGGARLSETL----ARRIPA--ELGCQLQQVFGMAE--G 337

Query: 128 IAT---MENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGY 183
           +     +++S    R   + G  ++P  E  +   D   PLP  ++G +  RGP   RGY
Sbjct: 338 LVNYTRLDDS--DERIFTTQGRPMSPDDEVWVADADGN-PLPQGEVGRLMTRGPYTFRGY 394

Query: 184 YNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           Y + Q      D  G+  +GDL   D DG + VV R K+ I
Sbjct: 395 YKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQI 435

Length = 536

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 63/222 (28%), Positives = 93/222 (41%), Gaps = 17/222 (7%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LP  H+ GL  I    +  G C+      +    L  +  + V    +VP L+  L    
Sbjct: 221 LPATHIGGLWWILTCLMHGGLCV--TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSEL 278

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV--IQGYGLTETSGIATMENSFAG 137
                 + SL+LVG G    G   +    + + +  V   Q YGL+ET   A    +  G
Sbjct: 279 KSANATVPSLRLVGYG----GSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDG 334

Query: 138 SRNIGSAGALA---PGVEALIVSVDTQKPLPPN-----QLGEIWLRGPNMMRGYYNNEQA 189
           S     AGA+    PGV+  + + D   P  P        G +W++ P  M GY+NN + 
Sbjct: 335 SIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPER 394

Query: 190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           T   +   GWV+TGDL     DG  Y+  R  E+I   G  +
Sbjct: 395 TA-EVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNI 435

Length = 540

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 50/167 (29%), Positives = 67/167 (40%), Gaps = 26/167 (15%)

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNV------PSATVIQGYGLTETSGIATMENS 134
           V   DL +L++  +G  P+  +  E  A  +        A     YGL E++   T+   
Sbjct: 266 VSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGA-AAPSYGLAESTCAVTVPVP 324

Query: 135 FAG-------------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMR 181
             G             +R     G   PG+E  I   D    +   ++GEI +RG +MM 
Sbjct: 325 GIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMS 384

Query: 182 GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
           GY          ID   W  TGDLGY   DG L V  R KELI   G
Sbjct: 385 GYLGQA-----PIDPDDWFPTGDLGYL-VDGGLVVCGRAKELITVAG 425

Length = 525

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 65.0 bits (158), Expect = 3e-12
 Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 25/229 (10%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQK-GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           ++    P++H   L    C  +   G  ++L  +FD +  L  +E++R+T   +VP + +
Sbjct: 197 IYYSSAPIYHAAPLR--WCSMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFV 254

Query: 74  ALAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT-------VIQGYGLTE 124
            L K    +  ++D+SSL+ V   AAP        C  +V  A        V + Y  TE
Sbjct: 255 RLLKLDADVRTRYDVSSLRAVIHAAAP--------CPVDVKHAMIDWLGPIVYEYYSSTE 306

Query: 125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYY 184
             G+  +++    +   GS G    G   L +  D    LP  ++G ++     +   Y 
Sbjct: 307 AHGMTFIDSPDWLAHP-GSVGRSVLG--DLHICDDDGNELPAGRIGTVYFERDRLPFRYL 363

Query: 185 NNEQATKLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           N+ + T          W   GDLG  D DG LY+ DR   +I   G  +
Sbjct: 364 NDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNI 412

Length = 501

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 52/214 (24%), Positives = 86/214 (40%), Gaps = 25/214 (11%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G  ++L+ K    D +   R I +  VT +W+   L   L          L+ L+
Sbjct: 187 GALLNGGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPE---ALAGLR 243

Query: 91  --LVGSGA--APLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGS 143
             LVG         + ++  C    P   +I GYG TE +  +T   +      + +I  
Sbjct: 244 QLLVGGDVLSPAHVRRVLAAC----PGLRLINGYGPTENTTFSTCHVITRLDEAADSI-P 298

Query: 144 AGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL----TIDKKG- 198
            G   P     I+  +  +P+P    GE+++ G  +  GY N  + T           G 
Sbjct: 299 IGRPIPNTTVYILD-EEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGE 357

Query: 199 -WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
               TGDL  +  DG +  + RI   +K +GF++
Sbjct: 358 RLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRI 391

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 52/143 (36%), Positives = 69/143 (48%), Gaps = 18/143 (12%)

Query: 100 GKELMEECAKNV----PSATVIQGYGLTET----SGIA-TMENSFAGSR-NIGSAGALAP 149
           G+EL  + AK +    PSAT+   YG TE     + I  T E      R  IG A    P
Sbjct: 269 GEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYA---KP 325

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDLG 206
               LI+  +  K LP  + GEI + GP++ +GY NN + T     T D +   HTGD G
Sbjct: 326 DSPLLIIDEEGTK-LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAG 384

Query: 207 YFDGDGQLYVVDRIKELIKYKGF 229
           Y + DG L+   RI   IK  G+
Sbjct: 385 YLE-DGLLFYQGRIDFQIKLNGY 406

Length = 503

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 65/255 (25%), Positives = 99/255 (38%), Gaps = 42/255 (16%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D  + C +PL+H     +  C  L  G  + L  KF    F + +     T I  V  L 
Sbjct: 129 DRTYTC-MPLYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELC 187

Query: 73  LALAKHGLVKKFD-LSSLKLV-GSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGI 128
             L        +D    +++  G+G  P   ++ E   +  NVP   + + Y  TE  G+
Sbjct: 188 RYLL-ATPPSPYDRDHKVRVAYGNGLRP---DIWERFRERFNVP--EIGEFYAATE--GV 239

Query: 129 ATMENSFAGSRNIGSAGALAP-------GVEALI-VSVDTQKPL-----------PPNQL 169
               N   G    G+ G               L+ +  +T  P+           P  + 
Sbjct: 240 FAFTNHNVGPFTAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEP 299

Query: 170 GEIWLRGPNMMR----GYYNNEQAT--KLTID--KKG--WVHTGDLGYFDGDGQLYVVDR 219
           GE+  R     R    GY  NE AT  KL  D  +KG  W  TGDL   D DG+ Y +DR
Sbjct: 300 GEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDR 359

Query: 220 IKELIKYKGFQVTSN 234
           + +  ++K   V++ 
Sbjct: 360 LGDTFRWKSENVSTG 374

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 61/234 (26%), Positives = 99/234 (42%), Gaps = 25/234 (10%)

Query: 15  VFLCVLPLFHV--FGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPP 70
             L V+PLFH   +G+A        K    ++M  AK D       ++  +VT    VP 
Sbjct: 222 TMLPVVPLFHANSWGIAFSAPSMGTK----LVMPGAKLDGASVYELLDTEKVTFTAGVPT 277

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
           + L L ++   +   L  LK+V  G + + + +++  A       V   +G+TE S + T
Sbjct: 278 VWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIK--AFEDMGVEVRHAWGMTEMSPLGT 335

Query: 131 -------MENSFAGSR-NIGSAGALAP-GVEALIVSVDTQKPLP--PNQLGEIWLRGPNM 179
                         +R ++       P GVE  I   D  K LP      G + +RGP +
Sbjct: 336 LAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAV 394

Query: 180 MRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
              YY  +      +D  G+  TGD+   D  G + + DR K++IK  G  ++S
Sbjct: 395 AAAYYRVDGEI---LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISS 445

Length = 542

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 65/241 (26%), Positives = 104/241 (43%), Gaps = 48/241 (19%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA- 74
           F+  LPLFH FGL V     L  G+          E+FL         H  +VP L+   
Sbjct: 409 FMSALPLFHSFGLTVGLFTPLLTGA----------EVFLYP----SPLHYRIVPELVYDR 454

Query: 75  -----------LAKHG-LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGL 122
                      L  +      +D + L+ V +GA  L +E  ++  ++     +++GYG+
Sbjct: 455 NCTVLFGTSTFLGNYARFANPYDFARLRYVVAGAEKL-QESTKQLWQDKFGLRILEGYGV 513

Query: 123 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP--NQLGEIWLRGPNMM 180
           TE + + ++    A     G+ G + PG++A ++SV       P   Q G + L+GPN+M
Sbjct: 514 TECAPVVSINVPMAA--KPGTVGRILPGMDARLLSV-------PGIEQGGRLQLKGPNIM 564

Query: 181 RGYYNNEQATKLT---------IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            GY   E+   L            ++GW  TGD+  FD  G + +  R K   K  G  V
Sbjct: 565 NGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV 624

Query: 232 T 232
           +
Sbjct: 625 S 625

Length = 718

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 62/232 (26%), Positives = 99/232 (42%), Gaps = 21/232 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P+FHV    +     L     ++     D +     IE  RVT    VP + L 
Sbjct: 221 AVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLG 280

Query: 75  LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT-- 130
           L  H        S+L+  ++G  A P     M    ++     VI  +G+TE S + T  
Sbjct: 281 LLNHMREAGLRFSTLRRTVIGGSACP---PAMIRTFEDEYGVEVIHAWGMTEMSPLGTLC 337

Query: 131 ------MENSFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMMR 181
                  +      R +    G +  GV+  IV  D  + LP +    G++ +RGP ++ 
Sbjct: 338 KLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVID 396

Query: 182 GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
            Y+  + A+ L     GW  TGD+   D DG + + DR K++IK  G  ++S
Sbjct: 397 RYFRGD-ASPLV---DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISS 444

Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 14/208 (6%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G+ +++     +D E     I +HRVT +   P  +  LA+H      +  SL++  
Sbjct: 4757 LINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPSLRVYC 4815

Query: 94   SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA---GALAPG 150
             G   + +   +   + +    +  GYG TET+    +  +  G     +    G     
Sbjct: 4816 FGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGN 4875

Query: 151  VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN-----EQATKLTIDKKG--WVHTG 203
                ++      PLP    GE++L G  + RGY        E+         G     TG
Sbjct: 4876 RSGYVLDGQLN-PLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTG 4934

Query: 204  DLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            DL  +  DG +  + R+   +K +GF++
Sbjct: 4935 DLARYRADGVIDYLGRVDHQVKIRGFRI 4962

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 59.2 bits (143), Expect = 4e-10
 Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 15/193 (7%)

Query: 48  FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D    +  I +  V  +  VP ++ A  +   V     +SL+ +      L  +  E+ 
Sbjct: 733 RDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQV 790

Query: 108 AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN 167
              +P A +   YG TE +   T         +    G     +   I+  + + P+P  
Sbjct: 791 FAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLE-PVPVG 849

Query: 168 QLGEIWLRGPNMMRGYYNNEQATKLTIDK---------KGWVHTGDLGYFDGDGQLYVVD 218
            LGE++L G  + RGY+       LT ++         +    TGDL  +  DG +    
Sbjct: 850 VLGELYLAGRGLARGYH---GRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAG 906

Query: 219 RIKELIKYKGFQV 231
           RI   +K +G ++
Sbjct: 907 RIDHQVKLRGLRI 919

Length = 5163

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 64/206 (31%), Positives = 90/206 (43%), Gaps = 40/206 (19%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG 79
           LPLFHV G   I    L  G+ +++  K  LE   +A+     TH  +VP  +  L    
Sbjct: 183 LPLFHVSGQG-IVWRWLYAGATLVVRDKQPLE---QALAG--CTHASLVPTQLWRL---- 232

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ---GYGLTETSGIATMENSFA 136
           L  + +  SLK V  G A +  EL E+          I+   GYGLTE      M ++  
Sbjct: 233 LDNRSEPLSLKAVLLGGAAIPVELTEQAE-----QQGIRCWCGYGLTE------MASTVC 281

Query: 137 GSRNIGSAGA--LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             R  G AG     PG E  +V             GEIWLRG ++  GY+   Q   L  
Sbjct: 282 AKRADGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQLVPLV- 328

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRI 220
           + +GW  T D G +   G+L ++ R+
Sbjct: 329 NDEGWFATRDRGEWQN-GELTILGRL 353

Length = 458

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 39/217 (17%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
            CVLPL+HV GL       L  G  +IL      +      E              L+L 
Sbjct: 164 FCVLPLYHVSGLMQFMRSFLTGGKLVIL----PYKRLKSGQELP-----PNPSDFFLSLV 214

Query: 77  KHGLVKKFD-----LSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTET-SGIA 129
              L +        L+  + +  G AP    L+E+  +  +  A     YG+TET S IA
Sbjct: 215 PTQLQRLLQLRPQWLAQFRTILLGGAPAWPSLLEQARQLQLRLAPT---YGMTETASQIA 271

Query: 130 TM--ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE 187
           T+  ++  AG+    S+G + P           Q  +P NQ G I ++  ++  GYY   
Sbjct: 272 TLKPDDFLAGNN---SSGQVLPHA---------QITIPANQTGNITIQAQSLALGYYPQ- 318

Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
                 +D +G   T DLGY D  G L+++ R  + I
Sbjct: 319 -----ILDSQGIFETDDLGYLDAQGYLHILGRNSQKI 350

Length = 452

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 18/145 (12%)

Query: 100 GKELMEECAKNV----PSATVIQGYGLTETSGIATMENSFAGSRNIGSA------GALAP 149
           G+EL  + AK +    P AT+   YG TE +   T   S   ++ I         G   P
Sbjct: 267 GEELPVKTAKALLERFPKATIYNTYGPTEATVAVT---SVKITQEILDQYPRLPIGFAKP 323

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDLG 206
            +   I+  + + PLP  + GEI + GP++ +GY NN + T     + + +    TGD G
Sbjct: 324 DMNLFIMDEEGE-PLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAG 382

Query: 207 YFDGDGQLYVVDRIKELIKYKGFQV 231
               DGQL+   R+   IK  G+++
Sbjct: 383 TIT-DGQLFYQGRLDFQIKLHGYRI 406

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 16/134 (11%)

Query: 80  LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSAT-----VIQGYGLTETSGIATMENS 134
           L + F   +L+L+  G A L  +L E         T        GYG TET+   T   +
Sbjct: 340 LRRSF-FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTT--GT 396

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
              +  +G  G   PGVE         K  P     E+ ++GPN+  GY+ + + T    
Sbjct: 397 HWDTERVGLIGLPLPGVEL--------KLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAF 448

Query: 195 DKKGWVHTGDLGYF 208
           D++G+   GD   F
Sbjct: 449 DEEGFYRLGDAARF 462

Length = 624

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 18/196 (9%)

Query: 49   DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
            D E  ++ IE+ +VT +  VP ++  L +     +  LS  ++V  G A L  E +    
Sbjct: 1797 DPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQVEHPLSLRRVVCGGEA-LEVEALRPWL 1855

Query: 109  KNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ------K 162
            + +P   +   YG TET     ++ +    R     G  +  +   I ++ T        
Sbjct: 1856 ERLPDTGLFNLYGPTET----AVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLN 1911

Query: 163  PLPPNQLGEIWLRGPNMMRGYYN--NEQATKLTIDKKGWV-----HTGDLGYFDGDGQLY 215
            P+P    GE++L G  + RGY N     A +   D  G V      TGDL  +  DG + 
Sbjct: 1912 PVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIE 1971

Query: 216  VVDRIKELIKYKGFQV 231
             + RI   +K +GF++
Sbjct: 1972 YLGRIDHQVKIRGFRI 1987

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 48/197 (24%), Positives = 72/197 (36%), Gaps = 20/197 (10%)

Query: 49   DLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC 107
            D E     +E+H VT I   PP+ L  LA+H        +       G A +    +   
Sbjct: 2224 DPEQLYDEMERHGVT-ILDFPPVYLQQLAEHAERDGRPPAVRVYCFGGEA-VPAASLRLA 2281

Query: 108  AKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAP------GVEALIVSVDTQ 161
             + +    +  GYG TE      +   +          A  P         A I+  D  
Sbjct: 2282 WEALRPVYLFNGYGPTEAVVTPLL---WKCRPQDPCGAAYVPIGRALGNRRAYILDADLN 2338

Query: 162  KPLPPNQLGEIWLRGPNMMRGYYNNE--QATKLTIDKKGWV-----HTGDLGYFDGDGQL 214
              L P   GE++L G  + RGY N     A +   D           TGDL  +  DG +
Sbjct: 2339 -LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRADGVV 2397

Query: 215  YVVDRIKELIKYKGFQV 231
              + RI   +K +GF++
Sbjct: 2398 EYLGRIDHQVKIRGFRI 2414

Length = 5163

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 29/208 (13%)

Query: 39  GSCIIL----MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGS 94
           G  ++L    +A  DL        K  VT I  VP     L +H  +     SS++ V  
Sbjct: 171 GGRVVLADNALALPDLP------AKAEVTLINTVPSAARELLRHDALP----SSVRTVNL 220

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT---MENSFAGSRNIGSAGALAPGV 151
              PL +EL++          V   YG +E +  +T   +E   + + +IG       G 
Sbjct: 221 AGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPSIGRP---LAGT 277

Query: 152 EALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVH-----TG 203
           +A ++     +P+P    GE+++ G  + RGY    + T    L     G        TG
Sbjct: 278 QAYVLD-AHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTG 336

Query: 204 DLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           DL     DGQL  + RI + +K +GF++
Sbjct: 337 DLVRRRADGQLEYLGRIDDQVKVRGFRI 364

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 117 IQGYGLTETSG-IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP--LPPNQLGEIW 173
            QGYGLTET+G I         + +IG  G ++P  +  + + +T K     P   GE+ 
Sbjct: 490 YQGYGLTETTGPIFVQHADDNNTESIG--GPISPNTKYKVRTWETYKATDTLPK--GELL 545

Query: 174 LRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
           ++  ++  GY+  ++ TK    + G+  TGD+   + +G L  +DR K L+K
Sbjct: 546 IKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVK 597

Length = 746

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 55.3 bits (134), Expect = 5e-09
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 29/150 (19%)

Query: 71  LILALAK-HGLVKKFDLSSLKLVGSGAAPLGKEL--------MEECAKNVPSATVIQGYG 121
           L+ AL +   L ++F  S LKL+    A L +++           C + +   T   G G
Sbjct: 318 LVPALERDAALRRRF-FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMT---GLG 373

Query: 122 LTETSGIATM---ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPN 178
           +TET+  AT      S AG  NIG     APG E  +V V  +         E+ ++GPN
Sbjct: 374 MTETAPSATFTTGPLSRAG--NIG---LPAPGCEVKLVPVGGKL--------EVRVKGPN 420

Query: 179 MMRGYYNNEQATKLTIDKKGWVHTGDLGYF 208
           +  GY+   + T    D++G+  +GD   F
Sbjct: 421 VTPGYWRAPELTAEAFDEEGYYRSGDAVRF 450

Length = 614

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 60/196 (30%), Positives = 83/196 (42%), Gaps = 41/196 (20%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAP------------LGKE 102
           I+KH+VT  +  P  I AL K G    KK+DLSSL+L+GS   P            +G E
Sbjct: 335 IDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGE 394

Query: 103 LMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVD 159
                    P   T  Q    TET GI  M     G+  +  GSA    PG++  +V  +
Sbjct: 395 -------RCPIVDTWWQ----TETGGI--MITPLPGATPLKPGSATRPLPGIQPAVVD-E 440

Query: 160 TQKPLPPNQLG-----EIWLRGPNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDG 212
              PL   + G     + W   P MMR  Y + +    T     KG   TGD    D DG
Sbjct: 441 EGNPLEGGEGGNLVIKDPW---PGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDG 497

Query: 213 QLYVVDRIKELIKYKG 228
             ++  R+ +++   G
Sbjct: 498 YYWITGRVDDVLNVSG 513

Length = 637

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 25/190 (13%)

Query: 54  LRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS 113
            R I   R+T +   P     L   G   +  L++L     G   L ++L E        
Sbjct: 177 ARLIADERITIMQATPATWRMLLAAGWRGRESLTAL----CGGEALPRDLAERLLSTG-- 230

Query: 114 ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIW 173
           A +   YG TET+  +T     A    + + G      +  ++  D  +P+PP   GE++
Sbjct: 231 AELWNMYGPTETTIWSTCARVTAADGPV-TIGRPIANTQVYVLDED-LQPVPPGVPGELY 288

Query: 174 LRGPNMMRGYYNNEQATKLTIDKKGWVH------------TGDLGYFDGDGQLYVVDRIK 221
           + G  + RGY    +   LT ++  +V             TGDL  +  DG+L  + R  
Sbjct: 289 IGGDGVARGYLGRPE---LTAER--FVPDPFDDPGGRLYRTGDLVRWRPDGRLEYLGRAD 343

Query: 222 ELIKYKGFQV 231
           + +K +GF++
Sbjct: 344 DQVKIRGFRI 353

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 52.6 bits (127), Expect = 4e-08
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 27/133 (20%)

Query: 87  SSLKLVGSGAAPLGKEL--------MEECAKNVPSATVIQGYGLTETSGIATM---ENSF 135
             L+L+    A L +++        +    + +P  +   G G TET+  AT        
Sbjct: 289 KRLRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTS---GLGATETAPTATFVHWPTDR 345

Query: 136 AGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID 195
           +G   IG     APG E  +V    +         E+ ++GPN+  GY+ + + T    D
Sbjct: 346 SG--VIG---LPAPGTELKLVPNGGKL--------EVRVKGPNVTPGYWRDPELTAEAFD 392

Query: 196 KKGWVHTGDLGYF 208
           ++G+   GD   F
Sbjct: 393 EEGFYRIGDAVRF 405

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 19/210 (9%)

Query: 36   LQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG 93
            L  G C+++     +D E   +AI  HR++     P  +   A+       D +SL +  
Sbjct: 3300 LICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGGA--DCASLDIYV 3357

Query: 94   SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEA 153
             G   +     E+  + +    +  GYG TE     T+      +        +   V  
Sbjct: 3358 FGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAG 3417

Query: 154  L-IVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK----------KGWVH 201
              I  +D Q  P+P    GE+++ G  + RGY+   Q   LT ++               
Sbjct: 3418 RSIYVLDGQLNPVPVGVAGELYIGGVGLARGYH---QRPSLTAERFVADPFSGSGGRLYR 3474

Query: 202  TGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TGDL  +  DG +  + RI   +K +GF++
Sbjct: 3475 TGDLARYRADGVIEYLGRIDHQVKIRGFRI 3504

Length = 3956

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 15/210 (7%)

Query: 34  GQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK 90
           G L  G+ + L+      D E F   +    VT + +VP  + AL +   V         
Sbjct: 717 GALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVAL-PRPQRA 775

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS-GIATMENSFAGSRNIGSA-GALA 148
           LV  G A L  +L+       P A +I  YG TET+ G++T E S           G   
Sbjct: 776 LVCGGEA-LQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPL 834

Query: 149 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNE--QATKLTIDKKG-----WVH 201
             +   I+      P+P   +GE+++ G  + RGY+      A +   D  G        
Sbjct: 835 ANLGLYILDHYLN-PVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYR 893

Query: 202 TGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           TGDL  +  DG +  + R+   +K +GF++
Sbjct: 894 TGDLARYRADGVIEYLGRMDHQVKIRGFRI 923

Length = 3956

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 21/105 (20%)

Query: 145 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT----------- 193
           G + PG +  IV+ DT      +++GEIW+        YY     TK T           
Sbjct: 356 GMVMPGAQMCIVNPDTPPLCRTDEIGEIWVNSSANATSYYGLTGMTKNTFEVFPNSSSDG 415

Query: 194 IDKKGWVHTGDLGYF----------DGDGQLYVVDRIKELIKYKG 228
           I +  +V TG LG+              G L+VV  I E ++  G
Sbjct: 416 IGENPYVRTGLLGFVGPTSHSMGPVVDMGLLFVVGSIDETLEVSG 460

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 58/242 (23%), Positives = 90/242 (37%), Gaps = 37/242 (15%)

Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKH--RVTHIWVVPPLIL 73
           FLC +P++HV    V     +     +            + I     RV H   VP L +
Sbjct: 227 FLCCVPIYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH--GVPTLWI 284

Query: 74  ALAKHGLV---KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIAT 130
            L  H L    ++  L  + + GS   P+  +  EE         V+  +G+TETS + T
Sbjct: 285 QLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY----GVDVVHVWGMTETSPVGT 340

Query: 131 MENSFAGSRNIG------SAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGP------- 177
           +    +G           S G     +E  IV+            GEI +RG        
Sbjct: 341 VARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYY 400

Query: 178 -----------NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKY 226
                      +  RG    +   + T D  GW+ TGD+G    DG L + DR +++I+ 
Sbjct: 401 HSPTEEGGGAASTFRGEDVEDANDRFTAD--GWLRTGDVGSVTRDGFLTIHDRARDVIRS 458

Query: 227 KG 228
            G
Sbjct: 459 GG 460

Length = 576

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 35/198 (17%)

Query: 54  LRAIEKHRVTHIW-VVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP 112
              +++H VT +W  VP L+  L  +       L SL+LV      +  +L        P
Sbjct: 210 AELVQRHGVT-VWNSVPALMDMLLTYAEDAARLLPSLRLVMLSGDWIPLDLPRRLRALAP 268

Query: 113 SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL--- 169
            A ++   G TE S              I S       V+    S+   KPLP  +    
Sbjct: 269 GARLVSLGGATEAS--------------IWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVL 314

Query: 170 ------------GEIWLRGPNMMRGYYNNEQAT--KLTIDKKG--WVHTGDLGYFDGDGQ 213
                       GE+++ G  +  GY+ + + T  +    + G     TGDLG +  DG 
Sbjct: 315 DEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPDGT 374

Query: 214 LYVVDRIKELIKYKGFQV 231
           +  + R    +K +G++V
Sbjct: 375 IEFLGRADHQVKIRGYRV 392

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 18/186 (9%)

Query: 57   IEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
            ++++ VT +  VPPL+       L      +SL+ + SG   L  EL     + +P   +
Sbjct: 1360 VQQYGVTTLHFVPPLLQLFIDEPLAA--ACTSLRRLFSGGEALPAELRNRVLQRLPQVQL 1417

Query: 117  IQGYGLTETSGIATMENSFA--GSRN-IGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEI 172
               YG TET+   T     A  G R+ IG      P    L   +D +   LPP   GE+
Sbjct: 1418 HNRYGPTETAINVTHWQCQAEDGERSPIGR-----PLGNVLCRVLDAELNLLPPGVAGEL 1472

Query: 173  WLRGPNMMRGYYNNE--QATKLTIDKKG-----WVHTGDLGYFDGDGQLYVVDRIKELIK 225
             + G  + RGY       A +   D  G        TGD   ++ DG L  + R+ + +K
Sbjct: 1473 CIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVK 1532

Query: 226  YKGFQV 231
             +GF+V
Sbjct: 1533 LRGFRV 1538

Length = 4334

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 25/137 (18%)

Query: 55  RAIEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL----GKELMEECA 108
           R +EK++V  ++  P  I  L K    L++K DLSSL+ +     PL       + E  A
Sbjct: 321 RIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISE--A 378

Query: 109 KNVPSATVIQGYGLTETS--------GIATMENSFAGSRNIGSAGALAPGVEALIVSVDT 160
             VP   VI  Y  TET         G+             GS G    G    +++  T
Sbjct: 379 LGVP---VIDNYWQTETGWPILAIARGVEDRPTRL------GSPGVPMYGYNVKLLNEVT 429

Query: 161 QKPLPPNQLGEIWLRGP 177
            +P  PN+ G + + GP
Sbjct: 430 GEPCGPNEKGVLVIEGP 446

Length = 629

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 63/240 (26%), Positives = 99/240 (41%), Gaps = 38/240 (15%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL--- 71
           V  C LPL+H  G  V     L  G+ + L  KF    F   + ++R T    +  L   
Sbjct: 242 VLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRY 301

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIA 129
           +L        +   L    ++G+G  P   ++ +E  +   +P   +++ Y  +E  G  
Sbjct: 302 LLNQPPKPTDRDHRLR--LMIGNGLRP---DIWDEFQQRFGIPR--ILEFYAASE--GNV 352

Query: 130 TMENSFAGSRNIG-SAGALAPGVEALIVSVDTQKPL----------PPNQ----LGEIWL 174
              N F     +G     LA     +   VDT +P+           P +    +G I  
Sbjct: 353 GFINVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITD 412

Query: 175 RGPNMMRGYYNNEQAT--KLTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
           RGP    G Y + +A+  K+  D  KKG  W +TGDL   DG G    VDR+ +  ++KG
Sbjct: 413 RGP--FDG-YTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKG 469

Length = 600

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 23  FHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH 78
           + V GL V        G+ ++L        D  +      +  VT        + A  K 
Sbjct: 321 WLVSGLLV--------GATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKA 372

Query: 79  GLV--KKFDLSSLKLVGSGAAPL 99
           GLV  +  DLS+L+ +GS  +PL
Sbjct: 373 GLVPGETHDLSALRTIGSTGSPL 395

Length = 655

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 56/219 (25%), Positives = 87/219 (39%), Gaps = 20/219 (9%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL---ILALA 76
           +P+FH  GL ++    +  G  ++    FD E  L     HR      VP +   IL L 
Sbjct: 224 MPMFHGLGLGMLML-TIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP 282

Query: 77  KHGLVKKFDLSSLKLVGSGA----APLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              +  +  L  L++V S        LG+  M+          +  GYG TE  GI  + 
Sbjct: 283 PR-VRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGD-----ILYNGYGSTEV-GIGALA 335

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                     + G    G    I+  +  +P+ P   G I++ G      Y   +   K 
Sbjct: 336 TPADLRDAPETVGKPVAGCPVRILDRNN-RPVGPRVTGRIFVGGELAGTRY--TDGGGKA 392

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            +D  G   TGD+GY D  G+L++V R  ++I   G  V
Sbjct: 393 VVD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENV 429

Length = 516

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 61/226 (26%), Positives = 86/226 (38%), Gaps = 48/226 (21%)

Query: 17  LCVLPLFHVFGLAVITCGQLQKGS---CIILMAKFDLEMFLRAIEK----HRVTHIWVVP 69
           L  LP  H+ GL V+    +  GS    + + A FD     RA+ +     R T +    
Sbjct: 78  LLALPAHHIAGLQVLV-RSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSL---V 133

Query: 70  PLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
           P+ LA A         L+ L  V  G  P    +++  A       V++ YG++ETSG  
Sbjct: 134 PMQLAKALDDPAATAALAELDAVLVGGGPAPAPVLDAAAA--AGINVVRTYGMSETSG-- 189

Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL----GEIWLRGPNMMRGYYN 185
                          G +  GV           PL   ++    G I L GP + +GY N
Sbjct: 190 ---------------GCVYDGV-----------PLDGVRVRVEDGRIALGGPTLAKGYRN 223

Query: 186 NEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                     + GW  T DLG  D DG L V+ R  + I   G  V
Sbjct: 224 PVDPDPFA--EPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTV 266

Length = 358

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH---GLVKKFDLSSLKLVGSG 95
           G+ +I ++  + E  L  ++  + T I   P  +L LA+      +    L SLK    G
Sbjct: 160 GATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKL-SLKKGIFG 218

Query: 96  AAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           A P  +E M +  +N         YGLTE  G    E
Sbjct: 219 AEPWSEE-MRKVIENRFGCKAFDIYGLTEGFGPGAGE 254

Length = 438

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 88  SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGAL 147
           SL+ V S    L   L E   +      ++ G G TE  G   + N     R +G+ G +
Sbjct: 261 SLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEV-GQTFVSNRVDEWR-LGTLGRV 318

Query: 148 APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGY 207
            P  E  +V+ D     P  + G++W+RGP + +GY+N   +    +  +GW+ T D   
Sbjct: 319 LPPYEIRVVAPDGTTAGPGVE-GDLWVRGPAIAKGYWNRPDS---PVANEGWLDTRDRVC 374

Query: 208 FDGDG 212
            D DG
Sbjct: 375 IDSDG 379

Length = 705

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 53/227 (23%), Positives = 90/227 (39%), Gaps = 18/227 (7%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-------FDLEMFLRAIEKHRVTHI 65
           D V      LF  +GL       +  G+  +LM +       FD       + +H+ T  
Sbjct: 203 DDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDR------LRRHQPTIF 256

Query: 66  WVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET 125
           + VP L  A+     +   D   L+L  S    L  E+ +   +      ++ G G TE 
Sbjct: 257 YGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRW-QARFGVDIVDGIGSTEM 315

Query: 126 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYN 185
             I    ++  G    G++G   PG    +V  D  + +   + GE+ + GP+    Y+N
Sbjct: 316 LHI--FLSNLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWN 372

Query: 186 NEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 232
           N   T+ T  +  W  +GD    + DG      R  +++K  G  V+
Sbjct: 373 NRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVS 418

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEE 106
           D ++  R   K  +T        + AL K G+   +  DLSSL+ + S  +PL  E  + 
Sbjct: 316 DPDVLWRLAAKLGITIFGTSAKYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDW 375

Query: 107 CAKNV 111
              +V
Sbjct: 376 VYSHV 380

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 15/240 (6%)

Query: 3   TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIE 58
           +M          V      +  V G + I    L  G+  +L        D  ++   +E
Sbjct: 264 SMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVE 323

Query: 59  KHRVTHIWVVPPLILALAKH--GLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATV 116
           ++ V  ++  P  I  L K     ++K DLSSL  +     PL  E       +     V
Sbjct: 324 RYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPL-DEPTAHWITDGLGKPV 382

Query: 117 IQGYGLTETSG--IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWL 174
           I  Y  TET    +A M         +GS G    G    ++   T +P  PN+ G + +
Sbjct: 383 IDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTV 442

Query: 175 RG---PNMMRGYYNNEQ---ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG 228
                P  +   + ++     T  +  K+    + D G  D DG  +++ R  ++I   G
Sbjct: 443 VPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAG 502

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 62/224 (27%)

Query: 21  PLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           P+ H +GL       L +GS  +++     KF L + LR   +H    ++ VP ++  L 
Sbjct: 150 PVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNI-LRNTPQHI---LYAVPLMLHILG 205

Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA 136
           +  L   F   ++   G    PL +    +  +   +  ++Q YG +E   ++       
Sbjct: 206 RL-LPGTFQFHAVMTSG---TPLPEAWFYKLRER--TTYMMQQYGCSEAGCVS------- 252

Query: 137 GSRNIGSAGALAPGVEALIVSVDTQKPLP---------PNQLGEIWLRGPNMMRGYYNNE 187
                     + P +++    +D   PLP          N   EI               
Sbjct: 253 ----------ICPDMKS---HLDLGNPLPHVSVSAGSDENAPEEI--------------- 284

Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
               + +  K  + T DLGY    G L+ + R+ ++I   G  V
Sbjct: 285 ---VVKMGDKE-IFTKDLGYKSERGTLHFMGRMDDVINVSGLNV 324

Length = 414

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 10/153 (6%)

Query: 85   DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA 144
              +SLK +  G   L  +L     +      +   YG TE +   T        ++    
Sbjct: 3309 RCTSLKRIVCGGEALPADLQ---QQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPI 3365

Query: 145  GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV---- 200
            G         I+    + P+P   LGE++L G  + RGY+N    T        +V    
Sbjct: 3366 GRPIANRACYILDGSLE-PVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGER 3424

Query: 201  --HTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
               TGDL  +  DG +  + R+   +K +GF++
Sbjct: 3425 LYRTGDLARYRADGVIEYIGRVDHQVKIRGFRI 3457

Length = 5163

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 59/240 (24%), Positives = 92/240 (38%), Gaps = 29/240 (12%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V    LPL+H  G  +   G +  G+ ++L  KF    F     K+ VT    +  L+  
Sbjct: 184 VVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYIGELLRY 243

Query: 75  LAKHGLVKKFDLSSLKL-VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           L             ++L +G+G  P   ++  E  +      V + Y  TE + I  +  
Sbjct: 244 LCNQPQSDNDRDHKVRLAIGNGLRP---DVWREFLRRFGPIHVWETYASTEGN-IGFI-- 297

Query: 134 SFAGSRN-IGSAGALAPGVEAL-IVSVDTQKPLP---------PNQLGEIWL-----RGP 177
           ++ G    +G A  L   +    ++  D +K  P         P   GE  L        
Sbjct: 298 NYTGRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQ 357

Query: 178 NMMRGYYNNEQAT--KLTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +   GY    + T  KL  D  KKG  + +TGDL   D    LY  DR  +  ++KG  V
Sbjct: 358 SPFLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENV 417

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 24/210 (11%)

Query: 39   GSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGA 96
            G+ ++L A+  +  E   + I + +V+ +   P     LA+  L  + +   +++  +G 
Sbjct: 2399 GARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQW-LAGQGEQLPVRMCITGG 2457

Query: 97   APLGKELMEECAKNVPSATVIQGYGLTET-----SGIA--TMENSFAGSRNIGSA-GALA 148
              L  E ++   +          YG TET     + +A   +E   A S  IG   GA  
Sbjct: 2458 EALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEG-AASVPIGRVVGARV 2516

Query: 149  PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN-----EQ--ATKLTIDKKGWVH 201
                A I+  D    +P    GE+++ G  + +GY++      E+  A     D      
Sbjct: 2517 ----AYILDADLA-LVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADGGRLYR 2571

Query: 202  TGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TGDL     DG +  V RI   +K +GF++
Sbjct: 2572 TGDLVRLRADGLVEYVGRIDHQVKIRGFRI 2601

Length = 4334

>gnl|CDD|220921 pfam10978, DUF2785, Protein of unknown function (DUF2785)

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 16/85 (18%)

Query: 153 ALIVSVDTQKP-LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVH----TGDL-- 205
           ALI+  D + P L P +  E++      +  Y   E  T+  +++KGW H      DL  
Sbjct: 24  ALILYADREHPFLTPQEREELF----EQLLTYLALEHDTRGYVEEKGWAHAIAHGADLLD 79

Query: 206 -----GYFDGDGQLYVVDRIKELIK 225
                       ++ ++  +KE  K
Sbjct: 80  ELVCHPKLPRADKILLLAALKEKYK 104

Some members in this family are annotated as hypothetical membrane spanning proteins however this cannot be confirmed. The family has no known function. Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02654	666	acetate-CoA ligase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PLN02479	567	acetate-CoA ligase	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.98
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.98
PRK08162	545	acyl-CoA synthetase; Validated	99.97
PRK09192	579	acyl-CoA synthetase; Validated	99.97
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07798	533	acyl-CoA synthetase; Validated	99.97
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
PRK08308	414	acyl-CoA synthetase; Validated	99.97
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	99.96
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.96
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	99.95
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.92
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.91
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.9
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.89
PTZ00297	1452	pantothenate kinase; Provisional	99.7
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.6
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.06
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	99.05
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	98.9
KOG3628	1363	consensus Predicted AMP-binding protein [General f	98.73
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	98.42
PRK09188	365	serine/threonine protein kinase; Provisional	98.13
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.02
PLN02249	597	indole-3-acetic acid-amido synthetase	97.98
PLN02247	606	indole-3-acetic acid-amido synthetase	97.77
PLN02620	612	indole-3-acetic acid-amido synthetase	97.67
TIGR02370	197	pyl_corrinoid methyltransferase cognate corrinoid	86.59
PRK02261	137	methylaspartate mutase subunit S; Provisional	84.46

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=6.9e-45  Score=309.07  Aligned_cols=224  Identities=50%  Similarity=0.842  Sum_probs=207.2

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCc
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l   89 (235)
                      ....|+.++.+|++|.+|++..+.+.+..|++++..+.++++.+++.+++|++|++.++|+++..|++.+.....+++++
T Consensus       222 ~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl  301 (537)
T KOG1176|consen  222 LTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSL  301 (537)
T ss_pred             CCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCcc
Confidence            34479999999999999997777778888888888889999999999999999999999999999999986677789999


Q ss_pred             eEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCc
Q 026632           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL  169 (235)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~  169 (235)
                      |.+..||+++++++.+++++.+|+..+.+.||+||+++.++.+...+. .+.+++|++++++...+.+ ++|+.+++++.
T Consensus       302 ~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~  379 (537)
T KOG1176|consen  302 RSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQT  379 (537)
T ss_pred             EEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc-CcccccCccccceEEEeeC-CCCCCCCCCCc
Confidence            999999999999999999999998999999999999987777665533 6889999999988887777 69999999999


Q ss_pred             eEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          170 GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       170 Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ||||++|+.++.||+++|+.|++.|+.+||++|||+|++|+||+++|++|.||+||.+|++|+|.|
T Consensus       380 GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~E  445 (537)
T KOG1176|consen  380 GEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAE  445 (537)
T ss_pred             eEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHH
Confidence            999999999999999999999999977799999999999999999999999999999999999975

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7.2e-41  Score=290.26  Aligned_cols=225  Identities=43%  Similarity=0.663  Sum_probs=201.3

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      ..++|++++++|++|.+|+...+..+++.|+++++.+  ++++..++..+.++++|++.++|+++..+++........+.
T Consensus       211 ~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~  290 (534)
T COG0318         211 LTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLS  290 (534)
T ss_pred             CCCCceEEEecChHHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccc
Confidence            5677999999999999999878888899999999998  59999999999999999999999999999998877766666


Q ss_pred             C-ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           88 S-LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        88 ~-lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      + +|.++.||+++++++++++.+.|+...+++.||+||++++++...........+..|.|+|+++++++|++++++++ 
T Consensus       291 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-  369 (534)
T COG0318         291 SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-  369 (534)
T ss_pred             cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-
Confidence            5 99999999999999999999999866899999999999877765544201345667999999999999987776666 


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |++|||+++||+++.||+++|+.+.+.|..+|||+|||+|++|++|+++|.||.||+|+.+|++|+|+|
T Consensus       370 g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~e  438 (534)
T COG0318         370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEE  438 (534)
T ss_pred             CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHH
Confidence            999999999999999999999999997744699999999999999999999999999999999999974

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.5e-40  Score=281.46  Aligned_cols=222  Identities=28%  Similarity=0.363  Sum_probs=199.8

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC--C-CHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F-DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~-~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|++++..++.|++|++..++.+|.+|+++++.+.  + +++.+++.++++++|.++.+|+.++.|.+....+.
T Consensus       207 ~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~  286 (528)
T COG0365         207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEP  286 (528)
T ss_pred             hhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCccc
Confidence            34556889999999999999999999999999999999863  2 49999999999999999999999999999877666


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                      .++++||.+.+.|||++++.++++.+.++ +.+.+.||+||++.+......   +.+.++.|.|+|++++.++|++ |++
T Consensus       287 ~dlssLr~~~SaGEPLnpe~~~w~~~~~g-~~i~d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~-g~~  361 (528)
T COG0365         287 YDLSSLRVLGSAGEPLNPEAFEWFYSALG-VWILDIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDE-GNP  361 (528)
T ss_pred             ccchhheeeeccCCCCCHHHHHHHHHHhC-CCEeccccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCC-CCc
Confidence            78999999999999999999999999998 999999999999955554332   3345566999999999999976 999


Q ss_pred             CCCCCceEEEEEcC--cccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGP--NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~--~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|+ |+|+++.|  +++.+||++|+.+.+.+... ||.|||.+++|+||+++|.||.||+||++|++|.|.|
T Consensus       362 ~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~E  433 (528)
T COG0365         362 VPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLE  433 (528)
T ss_pred             CCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHH
Confidence            99999 99999986  99999999999999988444 9999999999999999999999999999999999864

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=7.8e-40  Score=284.44  Aligned_cols=227  Identities=26%  Similarity=0.419  Sum_probs=198.4

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++++|++|.+|+...++.++..|+++++.+ .+++..+++.|+++++|++.++|+++..+++........+
T Consensus       219 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  298 (539)
T PRK06334        219 FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCL  298 (539)
T ss_pred             cCCCCCceEEEecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccccc
Confidence            345667999999999999999777889999999998875 5799999999999999999999999999988765555678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.||+++++++.+++.+.|++..+++.||+||++.++...... .......+|+|+++++++++|++++++++.
T Consensus       299 ~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~  377 (539)
T PRK06334        299 PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVN-SPKHESCVGMPIRGMDVLIVSEETKVPVSS  377 (539)
T ss_pred             ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCC-CCCCCCcCceecCCCEEEEEcCCCCccCCC
Confidence            8999999999999999999999999778999999999998766643322 123345789999999999999878899999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccc-cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTI-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+++|+.++.||+++++.+.... ..++||+|||+|+++++|++++.||.||+||++|++|+|.|
T Consensus       378 g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~e  447 (539)
T PRK06334        378 GETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEA  447 (539)
T ss_pred             CceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHH
Confidence            9999999999999999999988654322 24689999999999999999999999999999999999864

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=7.7e-41  Score=270.54  Aligned_cols=228  Identities=29%  Similarity=0.422  Sum_probs=206.5

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEc-cCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      .++..+++++.+..|++|.+|.....+.+|..|+++|++ +.|++...++.|+++++|+++++|+++..|++..+....+
T Consensus       269 r~g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~  348 (596)
T KOG1177|consen  269 RAGYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVD  348 (596)
T ss_pred             HhCcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCc
Confidence            344455679999999999999889999999999999996 5689999999999999999999999999999999999999


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccc-cCCCCCCCCCcccccCCCcEEEEEeCCCCccC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME-NSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~-~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v  164 (235)
                      ++++|.++.||+++|+++++.+.....-..+...||+||++++.+.. ..+..+....++|+.+++.+..++| +.|..+
T Consensus       349 ~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v  427 (596)
T KOG1177|consen  349 LSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEV  427 (596)
T ss_pred             hhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCcc
Confidence            99999999999999999999998865423477899999999877653 3333345567899999999999999 699999


Q ss_pred             CCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +-|..|||+++|.+++.+||++++.+.++...+.||+|||.+++|++|.++++||.||+|+.+|++|+|.|
T Consensus       428 ~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~E  498 (596)
T KOG1177|consen  428 PLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTE  498 (596)
T ss_pred             ccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999975

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3.8e-39  Score=281.40  Aligned_cols=224  Identities=44%  Similarity=0.795  Sum_probs=200.5

Q ss_pred             CCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc-CCCCCCCce
Q 026632           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-KKFDLSSLK   90 (235)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~-~~~~l~~lr   90 (235)
                      .++++++.+|++|.+|+...++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+.... ....++++|
T Consensus       243 ~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr  322 (560)
T PLN02574        243 SDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLK  322 (560)
T ss_pred             CCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccce
Confidence            5689999999999999987788888999999999999999999999999999999999999999887543 344678999


Q ss_pred             EEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCce
Q 026632           91 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLG  170 (235)
Q Consensus        91 ~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~G  170 (235)
                      .++.+|+++++++++++.+.++++.+++.||+||++.+...............+|.|.++++++++|++++++++.|+.|
T Consensus       323 ~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~G  402 (560)
T PLN02574        323 QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCG  402 (560)
T ss_pred             EEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCe
Confidence            99999999999999999999977999999999999876543222211234568999999999999998899999999999


Q ss_pred             EEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          171 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       171 el~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ||+++++.++.||+++++.+.+.+..+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       403 ei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~e  467 (560)
T PLN02574        403 ELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPAD  467 (560)
T ss_pred             EEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHH
Confidence            99999999999999999999888878999999999999999999999999999999999999864

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=5.2e-39  Score=270.90  Aligned_cols=214  Identities=40%  Similarity=0.630  Sum_probs=187.9

Q ss_pred             cEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCC---HHHHHHHHHhccceEEeecHHHHHHHHhcCCcC----CCCC
Q 026632           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KFDL   86 (235)
Q Consensus        14 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----~~~l   86 (235)
                      |++++++|++|.+|+...++.++..|+++++.+...   ++.+++.++++++|+++++|+++..+++..+..    ...+
T Consensus       197 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l  276 (417)
T PF00501_consen  197 DRILSFLPLSHIFGLISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDL  276 (417)
T ss_dssp             TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTG
T ss_pred             ceEEeeccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccccccccc
Confidence            599999999999999889999999999999998654   477899999999999999999999999843222    3478


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++++|+++++++.+.+++.++..++++.||+||++.++..........+.+++|.|+++++++++|+++++++++
T Consensus       277 ~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~  356 (417)
T PF00501_consen  277 SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPP  356 (417)
T ss_dssp             TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBEST
T ss_pred             ccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccccc
Confidence            88999999999999999999999998558999999999999887553222234567899999999999999888999999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEec
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYK  227 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~  227 (235)
                      |+.|||++++|.++.||+++++.+.+.|..+|||+|||+|++|++|++++.||.||+||++
T Consensus       357 g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  357 GEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             TSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            9999999999999999999999999988666899999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-38  Score=282.26  Aligned_cols=220  Identities=24%  Similarity=0.360  Sum_probs=189.0

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhc--------CCcC
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKH--------GLVK   82 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~--------~~~~   82 (235)
                      .++|++++++|++|.+++. ..+.+++.|+++++.+. ++..+++.|+++++|+++++|.++..|.+.        ...+
T Consensus       345 ~~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~  422 (746)
T PTZ00342        345 YNPKTHLSYLPISHIYERV-IAYLSFMLGGTINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLK  422 (746)
T ss_pred             CCCCeEEEeCcHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHH
Confidence            3568999999999999994 56778999999998865 899999999999999999999999888642        1000


Q ss_pred             ----------------------------------CCCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccc
Q 026632           83 ----------------------------------KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI  128 (235)
Q Consensus        83 ----------------------------------~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~  128 (235)
                                                        ....+++|.+++||+++++++.+++++.++ +.+++.||+||+++.
T Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g-~~i~~gYGlTEt~~~  501 (746)
T PTZ00342        423 RFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN-VNYYQGYGLTETTGP  501 (746)
T ss_pred             HHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC-CCEEEeeccCcccce
Confidence                                              001268999999999999999999998886 999999999999876


Q ss_pred             cccccCCCCCCCCCcccccC-CCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEE
Q 026632          129 ATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGY  207 (235)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~p~-~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~  207 (235)
                      ++.....  +...+++|.|+ |+++++++|.++....+..+.|||+++||.++.|||++|+.|++.|+.+|||+|||+|+
T Consensus       502 ~~~~~~~--~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~  579 (746)
T PTZ00342        502 IFVQHAD--DNNTESIGGPISPNTKYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQ  579 (746)
T ss_pred             eeeccCC--CCCcccccCcCCCcEEEEEecccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEE
Confidence            6654433  45668899998 99999999865555555567899999999999999999999999998899999999999


Q ss_pred             EcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          208 FDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       208 ~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      +|++|+++++||+||+|++ +|++|+|++
T Consensus       580 ~d~dG~l~i~gR~kdlIkls~Ge~I~p~e  608 (746)
T PTZ00342        580 INKNGSLTFLDRSKGLVKLSQGEYIETDM  608 (746)
T ss_pred             ECCCCeEEEEccCCCeEEeCCCEEEchHH
Confidence            9999999999999999996 799999964

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.6e-37  Score=269.92  Aligned_cols=228  Identities=46%  Similarity=0.775  Sum_probs=204.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+........++
T Consensus       219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  298 (537)
T PLN02246        219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLS  298 (537)
T ss_pred             cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCcc
Confidence            44567799999999999999977788999999999999999999999999999999999999999999887666566788


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccC---CCCCCCCCcccccCCCcEEEEEeCCCCccC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS---FAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~---~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v  164 (235)
                      ++|.++.||+++++++.+.+.+.|++..+++.||+||++.++.....   .......+.+|+|+++++++++|+++++++
T Consensus       299 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~  378 (537)
T PLN02246        299 SIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASL  378 (537)
T ss_pred             ceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcC
Confidence            99999999999999999999999987889999999999876543211   111234467899999999999998789999


Q ss_pred             CCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|+.|||+++++.++.||+++++.+...+..++||+|||+++++++|++++.||.||+|+++|++|+|.+
T Consensus       379 ~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~e  449 (537)
T PLN02246        379 PRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE  449 (537)
T ss_pred             CCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHH
Confidence            99999999999999999999999999888878899999999999999999999999999999999999863

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.7e-38  Score=280.49  Aligned_cols=221  Identities=29%  Similarity=0.475  Sum_probs=184.0

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--------
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--------   81 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--------   81 (235)
                      ..++|++++++|++|.++.. ....++..|+++++.+ +++..+++.++++++|+++++|+++..+.+....        
T Consensus       266 ~~~~d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~  343 (666)
T PLN02614        266 LTVKDVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFL  343 (666)
T ss_pred             CCCCcEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHH
Confidence            45679999999999999984 5567788999998875 5899999999999999999999999877642100        


Q ss_pred             -------------------------CC-----------CCC-CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccc
Q 026632           82 -------------------------KK-----------FDL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE  124 (235)
Q Consensus        82 -------------------------~~-----------~~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  124 (235)
                                               ..           ..+ +++|.+++||+++++++ +.+.+.++++++++.||+||
T Consensus       344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE  422 (666)
T PLN02614        344 KKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTE  422 (666)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHh
Confidence                                     00           001 58999999999999876 56667776689999999999


Q ss_pred             cccccccccCCCCCCCCCcccccCCCcEEEEEeC-C-CCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEec
Q 026632          125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-D-TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHT  202 (235)
Q Consensus       125 ~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~-~-~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~T  202 (235)
                      ++++.+...... ....+++|+|+|+++++++|. + .++++++|+.|||+++||.++.|||++|+.|++.| .+|||+|
T Consensus       423 ~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f-~dGw~~T  500 (666)
T PLN02614        423 SCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVL-IDGWLHT  500 (666)
T ss_pred             hhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhh-ccCCccc
Confidence            986554333221 234578999999999999983 2 34789999999999999999999999999999998 6899999


Q ss_pred             CceEEEcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          203 GDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       203 gDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      ||+|++|++|+++|+||+||+||+ +|++|+|+|
T Consensus       501 GDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~e  534 (666)
T PLN02614        501 GDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVEN  534 (666)
T ss_pred             ceEEEEcCCCCEEEEEcchhceecCCCeeecHHH
Confidence            999999999999999999999996 799999974

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=5.7e-38  Score=278.61  Aligned_cols=228  Identities=21%  Similarity=0.280  Sum_probs=198.1

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc-
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV-   81 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~-   81 (235)
                      .+...++|++++..|++|++|+...++.+|+.|+++++.++    +++..+++.|+++++|++.++|++++.|.+.... 
T Consensus       311 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  390 (666)
T PLN02654        311 AFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY  390 (666)
T ss_pred             hcCCCCCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc
Confidence            34566779999999999999988888999999999999863    4899999999999999999999999999886532 


Q ss_pred             -CCCCCCCceEEEecccCCcHHHHHHHHHhCCC--CceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeC
Q 026632           82 -KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        82 -~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                       ...+++++|.++++|+++++++++++.+.++.  +.+.+.||+||+++..............+++|.|+++++++++|+
T Consensus       391 ~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~  470 (666)
T PLN02654        391 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE  470 (666)
T ss_pred             cccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECC
Confidence             33467899999999999999999999999974  679999999999876554322212345678999999999999995


Q ss_pred             CCCccCCCCCceEEEEEc--CcccccccCCccccccccc--CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          159 DTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       159 ~~~~~v~~g~~Gel~v~~--~~~~~~y~~~~~~~~~~~~--~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                       +|++++.++.|||++++  |+++.+|+++++.+...+.  .+|||+|||++++|++|.+++.||+||+||++|++|+|+
T Consensus       471 -~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~  549 (666)
T PLN02654        471 -KGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTA  549 (666)
T ss_pred             -CCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHH
Confidence             78899999999999998  7899999999988876652  379999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus       550 E  550 (666)
T PLN02654        550 E  550 (666)
T ss_pred             H
Confidence            4

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=2.4e-38  Score=271.52  Aligned_cols=209  Identities=33%  Similarity=0.494  Sum_probs=180.0

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--------c
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--------V   81 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--------~   81 (235)
                      ..++|+.++++|+.|.+...+.....+..|.+....+  ++..+++.+.+++||.++++|.+|+.+-+...        .
T Consensus       230 ~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~~--~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~  307 (613)
T COG1022         230 IGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKE--DPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAV  307 (613)
T ss_pred             CCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEecC--CHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchh
Confidence            5578999999999999999655555555555555544  99999999999999999999998874432110        0


Q ss_pred             ----------------------------------------CCCCCCCceEEEecccCCcHHHHHHHHHhCCCCceecccc
Q 026632           82 ----------------------------------------KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYG  121 (235)
Q Consensus        82 ----------------------------------------~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  121 (235)
                                                              ....-.++|.+++||+++++++.++++..  ++++...||
T Consensus       308 ~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYG  385 (613)
T COG1022         308 RRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYG  385 (613)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEec
Confidence                                                    00011489999999999999999999876  599999999


Q ss_pred             ccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEe
Q 026632          122 LTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVH  201 (235)
Q Consensus       122 ~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~  201 (235)
                      +||+++.++..++.  ....+++|.|+|++++++.|.           |||+|+||.++.|||++|+.|++.|+.|||++
T Consensus       386 lTEts~~~~v~~~~--~~~~gtvG~p~p~~evKI~d~-----------GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~  452 (613)
T COG1022         386 LTETSAVVSVNPPD--RFVLGTVGKPLPGIEVKIADD-----------GEILVRGPNVMKGYYKNPEATAEAFTEDGWFR  452 (613)
T ss_pred             ccccccceEEcccc--CcccCCcCCcCCCceEEEccC-----------ceEEEecchhcchhcCChHHHhhhccccCCcc
Confidence            99999999987766  677789999999999999995           99999999999999999999999999999999


Q ss_pred             cCceEEEcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          202 TGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       202 TgDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      |||+|.++++|+++++||+||+|++ +|++|.|++
T Consensus       453 TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~  487 (613)
T COG1022         453 TGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEP  487 (613)
T ss_pred             cCceeEEcCCCcEEEeecccceEECCCCcccChHH
Confidence            9999999999999999999999999 899999973

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.7e-37  Score=271.14  Aligned_cols=221  Identities=29%  Similarity=0.474  Sum_probs=191.5

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~   85 (235)
                      +...++|+++.++|++|..|+ ..++.++..|+++++.+++++..+++.++++++|++.++|+++..|++....  ....
T Consensus       208 ~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~  286 (563)
T PLN02860        208 VGYGEDDVYLHTAPLCHIGGL-SSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKV  286 (563)
T ss_pred             cCCCCCCEEEEecCchhhccH-HHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhcccc
Confidence            445667999999999999998 5788999999999999999999999999999999999999999999876432  2245


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---------------------CCCCCcc
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------------------SRNIGSA  144 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---------------------~~~~~~~  144 (235)
                      ++++|.++.||+++++++.+.+++.|++.++++.||+||+++.+........                     ......+
T Consensus       287 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  366 (563)
T PLN02860        287 FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCV  366 (563)
T ss_pred             ccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCccc
Confidence            7899999999999999999999999987999999999999865443211100                     0112257


Q ss_pred             cccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCce
Q 026632          145 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI  224 (235)
Q Consensus       145 g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i  224 (235)
                      |+|++++++++++++      +|+.|||++++|.++.||+++++.+...+..+|||+|||+|+++++|++++.||+||+|
T Consensus       367 G~p~~~~~v~i~~~~------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i  440 (563)
T PLN02860        367 GKPAPHVELKIGLDE------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRI  440 (563)
T ss_pred             CCccCCcEEEEecCC------CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcCCCCEEEeeccccee
Confidence            999999999999864      68899999999999999999999999888789999999999999999999999999999


Q ss_pred             EeccEEeecCC
Q 026632          225 KYKGFQVTSNW  235 (235)
Q Consensus       225 ~~~G~~v~p~~  235 (235)
                      |++|++|+|.|
T Consensus       441 ~~~G~~v~p~e  451 (563)
T PLN02860        441 KTGGENVYPEE  451 (563)
T ss_pred             EECCEEccHHH
Confidence            99999999864

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.3e-37  Score=267.12  Aligned_cols=226  Identities=32%  Similarity=0.534  Sum_probs=201.3

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+....+|++++++|++|.+|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........+
T Consensus       225 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~  304 (546)
T PRK08314        225 WSNSTPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDL  304 (546)
T ss_pred             hhCCCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCc
Confidence            34456779999999999999998888999999999999999999999999999999999999999999887765556678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.||+++++++.+++.+.|+ .++++.||+||++.........  ......+|.|+++++++++|++++++++.
T Consensus       305 ~~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~~~~~~  381 (546)
T PRK08314        305 SSLRYIGGGGAAMPEAVAERLKELTG-LDYVEGYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETLEELPP  381 (546)
T ss_pred             hhhheeeeccccCCHHHHHHHHHHcC-CcEEecccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCCcCCCC
Confidence            89999999999999999999999996 8999999999998765543322  23456789999999999999888999999


Q ss_pred             CCceEEEEEcCcccccccCCccccccccc---CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTID---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~---~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+++++.++.||+++++.+++.|.   ..+||+|||+++++++|++++.||+||+|+++|++|+|+|
T Consensus       382 g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e  453 (546)
T PRK08314        382 GEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAE  453 (546)
T ss_pred             CCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHH
Confidence            99999999999999999999988887763   2459999999999999999999999999999999999864

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=8e-37  Score=266.12  Aligned_cols=223  Identities=25%  Similarity=0.356  Sum_probs=198.9

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...++|++++.+|++|..|+...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+........+++
T Consensus       234 ~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~  313 (547)
T PRK13295        234 GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSS  313 (547)
T ss_pred             CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCccc
Confidence            34567999999999999998888999999999999999889999999999999999999999999999877666667889


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++.+|+++++++.+++.+.++ +++++.||+||++.++..............+|+|.++++++++|+ ++++++.|+
T Consensus       314 l~~~~~~G~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~-~~~~~~~g~  391 (547)
T PRK13295        314 LRTFLCAGAPIPGALVERARAALG-AKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDA-DGAPLPAGQ  391 (547)
T ss_pred             ceEEEEecCCCCHHHHHHHHHHhC-CCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECC-CCCCCCCCC
Confidence            999999999999999999999985 999999999999876654432211233457899999999999995 789999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++++.++.||+++++.+...  .+|||+|||+++++++|++++.||.||+|+++|++|+|.+
T Consensus       392 ~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~  456 (547)
T PRK13295        392 IGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVE  456 (547)
T ss_pred             CCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHH
Confidence            9999999999999999999888765  6789999999999999999999999999999999999863

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.6e-37  Score=275.41  Aligned_cols=223  Identities=29%  Similarity=0.429  Sum_probs=187.2

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc------
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV------   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~------   81 (235)
                      +...++|++++++|++|.+++. .++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....      
T Consensus       257 ~~~~~~d~~l~~lPl~h~~~~~-~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~  334 (651)
T PLN02736        257 TKFYPSDVHISYLPLAHIYERV-NQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESG  334 (651)
T ss_pred             cCCCCCCEEEEeCCHHHHHHHH-HHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhccc
Confidence            3456779999999999999994 67888999999998765 889999999999999999999998877543100      


Q ss_pred             ----------------------CCC-------------CC-CCceEEEecccCCcHHHHHHHHHhCCCCceecccccccc
Q 026632           82 ----------------------KKF-------------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET  125 (235)
Q Consensus        82 ----------------------~~~-------------~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  125 (235)
                                            ...             .+ +++|.+++||+++++++.+++++.++ +++++.||+||+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g-~~~~~~YG~TE~  413 (651)
T PLN02736        335 GLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG-GRVLEGYGMTET  413 (651)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC-CCeEEEechHHh
Confidence                                  000             01 47999999999999999999998886 899999999999


Q ss_pred             ccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCcc---CCCCCceEEEEEcCcccccccCCcccccccccCCCeEec
Q 026632          126 SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP---LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHT  202 (235)
Q Consensus       126 g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~---v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~T  202 (235)
                      ++.+......  ....+++|+|+|+++++++|.++++.   ..+++.|||+++||.++.||+++|+.+.+.|+.+|||+|
T Consensus       414 ~~~~~~~~~~--~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~T  491 (651)
T PLN02736        414 SCVISGMDEG--DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHT  491 (651)
T ss_pred             chheeccCCC--CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeec
Confidence            8766544332  34567899999999999998544322   233457999999999999999999999999988999999


Q ss_pred             CceEEEcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          203 GDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       203 gDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      ||+|++|++|+++|.||+||+||+ +|++|+|+|
T Consensus       492 GDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~e  525 (651)
T PLN02736        492 GDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEK  525 (651)
T ss_pred             cceEEEcCCCcEEEEEechhheEcCCCcEechHH
Confidence            999999999999999999999997 799999974

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.4e-37  Score=266.83  Aligned_cols=220  Identities=27%  Similarity=0.381  Sum_probs=192.3

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~   85 (235)
                      +...++|+++++.|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++....  ....
T Consensus       243 ~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~  321 (549)
T PRK07788        243 VPFRAGETTLLPAPMFHATGW-AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYD  321 (549)
T ss_pred             CCCCcCCeEEEccchHHHHHH-HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCC
Confidence            334567999999999999999 5677889999999999889999999999999999999999999999887654  4456


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      ++++|.+++||+++++++.+++.+.|+ ..+++.||+||++.++..... ......+.+|+|+++++++++|+ ++++++
T Consensus       322 ~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~l~~~YG~TE~~~~~~~~~~-~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~  398 (549)
T PRK07788        322 TSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATIATPE-DLAEAPGTVGRPPKGVTVKILDE-NGNEVP  398 (549)
T ss_pred             CCceeEEEEeCCCCCHHHHHHHHHHhC-ccceeccCcchhchhhccChh-hhhhcCCCcccCCCCcEEEEECC-CcCCCC
Confidence            789999999999999999999999997 789999999999865543322 11234567999999999999995 789999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++++.++.||++++..   .. .+|||+|||+++++++|++++.||+||+||++|++|+|.+
T Consensus       399 ~g~~Gel~v~g~~~~~gY~~~~~~---~~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~e  464 (549)
T PRK07788        399 RGVVGRIFVGNGFPFEGYTDGRDK---QI-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAE  464 (549)
T ss_pred             CCCeEEEEEeCCCccccccCCCcc---cc-cCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHH
Confidence            999999999999999999988765   12 5799999999999999999999999999999999999864

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.9e-37  Score=263.32  Aligned_cols=223  Identities=33%  Similarity=0.485  Sum_probs=199.4

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ....+|++++.+|++|.+|+...++.++..|+++++.+.++++.+++.++++++|++.++|++++.+++........+++
T Consensus       186 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  265 (496)
T PRK06839        186 DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQS  265 (496)
T ss_pred             CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcc
Confidence            45567999999999999999877789999999999998899999999999999999999999999999887666667889


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++.||+++++++.+.+.+.  ++++.+.||+||++.++............+.+|+|+++++++++|+ +++.++.|+
T Consensus       266 lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~~~~~~~g~  342 (496)
T PRK06839        266 VRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDE-NKNKVEVGE  342 (496)
T ss_pred             cceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECC-CcCCCCCCC
Confidence            9999999999999999999886  5899999999999976554333322345678999999999999996 667799999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++++.++.+|+++++.+...+ .+|||+|||+++++++|++++.||.||+|+.+|++|+|.+
T Consensus       343 ~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  408 (496)
T PRK06839        343 VGELLIRGPNVMKEYWNRPDATEETI-QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLE  408 (496)
T ss_pred             ceEEEEECCCcchhhcCChHHHHHHH-cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHH
Confidence            99999999999999999999888777 6899999999999999999999999999999999999864

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=8.5e-37  Score=269.79  Aligned_cols=227  Identities=28%  Similarity=0.382  Sum_probs=196.6

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--   81 (235)
                      +...++|++++..|++|+.++...++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|.+....  
T Consensus       273 ~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  352 (625)
T TIGR02188       273 FDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWV  352 (625)
T ss_pred             cCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc
Confidence            4456679999999999999987788999999999999753    4899999999999999999999999999886543  


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCCC--CceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      ....++++|.++++|+++++++++++.+.++.  +.+++.||+||+++++..........+.+.+|+|+++++++++| +
T Consensus       353 ~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~  431 (625)
T TIGR02188       353 KKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-E  431 (625)
T ss_pred             ccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-C
Confidence            23457899999999999999999999998863  78999999999997655432222234567899999999999999 5


Q ss_pred             CCccCC-CCCceEEEEEc--CcccccccCCccccccccc--CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          160 TQKPLP-PNQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       160 ~~~~v~-~g~~Gel~v~~--~~~~~~y~~~~~~~~~~~~--~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      +|++++ .|+.|||++++  |+++.+|+++++.+...+.  .+|||+|||++++|++|++++.||+||+||++|++|+|+
T Consensus       432 ~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~  511 (625)
T TIGR02188       432 EGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTA  511 (625)
T ss_pred             CCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHH
Confidence            889999 99999999999  6899999999987776653  478999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus       512 e  512 (625)
T TIGR02188       512 E  512 (625)
T ss_pred             H
Confidence            4

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=6.6e-37  Score=286.44  Aligned_cols=226  Identities=32%  Similarity=0.470  Sum_probs=200.9

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++.+|++|.+|+...++.++..|+++++.+ .++++.+++.++++++|++.++|++++.+.+........+
T Consensus       818 ~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  897 (1146)
T PRK08633        818 FNLRNDDVILSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMF  897 (1146)
T ss_pred             cCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccC
Confidence            345677999999999999999777899999999999876 4789999999999999999999999999988766666678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC--------CCCCCCcccccCCCcEEEEEeC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--------GSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~--------~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      +++|.++.||+++++++.+.+++.++ .++++.||+||+++++.......        ...+.+++|+|.|+++++++|+
T Consensus       898 ~~lr~~~~gg~~~~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~  976 (1146)
T PRK08633        898 ASLRLVVAGAEKLKPEVADAFEEKFG-IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDP  976 (1146)
T ss_pred             CCeeeEEEcCCcCCHHHHHHHHHHhC-CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcC
Confidence            89999999999999999999999996 99999999999988765432211        0124568999999999999998


Q ss_pred             CCCccCCCCCceEEEEEcCcccccccCCcccccccccCC----CeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          159 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK----GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       159 ~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~----g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      +++++++.|+.|||+++|+.++.||+++++.+++.+ .+    +||+|||++++|++|++++.||.||+||++|++|+|+
T Consensus       977 ~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~-~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~ 1055 (1146)
T PRK08633        977 ETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVI-KDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLG 1055 (1146)
T ss_pred             CCCccCCCCCceEEEEcCCCccccccCCccchHHHh-hcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHH
Confidence            889999999999999999999999999999988877 34    8999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus      1056 e 1056 (1146)
T PRK08633       1056 A 1056 (1146)
T ss_pred             H
Confidence            4

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.8e-37  Score=271.36  Aligned_cols=222  Identities=25%  Similarity=0.336  Sum_probs=191.2

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC--CC----HHHHHHHHHhccceEEeecHHHHHHHHhcCCc--
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FD----LEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--   81 (235)
                      ...+|++++..|++|+.++ ..++.++..|+++++.+.  +.    +..+++.++++++|++.++|++++.|.+....  
T Consensus       293 ~~~~d~~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  371 (647)
T PTZ00237        293 KDIPTVVFSHSSIGWVSFH-GFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEAT  371 (647)
T ss_pred             CCCCcEEEEcCCCceEeeH-HHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcccc
Confidence            3456999999999999876 578899999999999764  12    68899999999999999999999999875321  


Q ss_pred             ---CCCCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeC
Q 026632           82 ---KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        82 ---~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                         ...+++++|.++++|+++++++.+++.+.++ +.+++.||+||++++....... .....+++|+|+++++++++|+
T Consensus       372 ~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g-~~i~~~yG~TE~~~~~~~~~~~-~~~~~~s~G~p~~g~~~~i~d~  449 (647)
T PTZ00237        372 IIRSKYDLSNLKEIWCGGEVIEESIPEYIENKLK-IKSSRGYGQTEIGITYLYCYGH-INIPYNATGVPSIFIKPSILSE  449 (647)
T ss_pred             ccccccCcchheEEEecCccCCHHHHHHHHHhcC-CCEEeeechHHhChhhhccCCC-CCCCCCCCccCcCCceEEEECC
Confidence               2346789999999999999999999999987 9999999999999765533221 1233478999999999999995


Q ss_pred             CCCccCCCCCceEEEEEcC---cccccccCCcccccccccC-CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          159 DTQKPLPPNQLGEIWLRGP---NMMRGYYNNEQATKLTIDK-KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       159 ~~~~~v~~g~~Gel~v~~~---~~~~~y~~~~~~~~~~~~~-~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                       +|++++.|+.|||++++|   +++.+||++++.+.+.|.. +|||+|||++++|++|++++.||+||+||++|++|+|+
T Consensus       450 -~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~  528 (647)
T PTZ00237        450 -DGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLN  528 (647)
T ss_pred             -CCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHH
Confidence             899999999999999986   7899999999988877743 79999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus       529 e  529 (647)
T PTZ00237        529 T  529 (647)
T ss_pred             H
Confidence            4

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.4e-36  Score=261.59  Aligned_cols=225  Identities=31%  Similarity=0.483  Sum_probs=200.8

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ....+|+++...|++|.+++....+.+++.|+++++.+.+++..+++.++++++|++.++|+++..+++........+++
T Consensus       186 ~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~  265 (497)
T PRK06145        186 GLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDS  265 (497)
T ss_pred             CCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCcccccccc
Confidence            45667999999999999999777788899999999999899999999999999999999999999998876666667789


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++.||+++++++.+++.+.|++.++++.||+||++...............+.+|+|+++++++++|+ +++.++.|+
T Consensus       266 l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~~~  344 (497)
T PRK06145        266 LAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADG-AGRWLPPNM  344 (497)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECC-CCCCCCCCC
Confidence            9999999999999999999999987899999999999986554332211234567899999999999995 788999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++|+.++.||+++++.+.+.| .++||+|||+++++++|++++.||+||+|+++|++|+|++
T Consensus       345 ~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~  410 (497)
T PRK06145        345 KGEICMRGPKVTKGYWKDPEKTAEAF-YGDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSE  410 (497)
T ss_pred             ceEEEEECcchhhhhcCChHHHHHHH-hCCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHH
Confidence            99999999999999999999998887 6899999999999999999999999999999999999863

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-36  Score=262.29  Aligned_cols=228  Identities=36%  Similarity=0.579  Sum_probs=203.7

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+...++|++++.+|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+........+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  280 (513)
T PRK07656        201 YLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDL  280 (513)
T ss_pred             hhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCc
Confidence            34456679999999999999998889999999999999888899999999999999999999999999999877777778


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC-CCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~-~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      +++|.++.||+++++++.+.+.+.++...+++.||+||+++++..+..... ......+|.|+++++++++|+ ++++++
T Consensus       281 ~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~  359 (513)
T PRK07656        281 SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNE-LGEEVP  359 (513)
T ss_pred             cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECC-CCCCCC
Confidence            999999999999999999999999973389999999999887765543221 122568999999999999995 789999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++++.++.+|++++..+...+..++||+|||+++++++|.+++.||.||+|+++|.+++|.+
T Consensus       360 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~  429 (513)
T PRK07656        360 VGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAE  429 (513)
T ss_pred             CCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHH
Confidence            9999999999999999999999888888866899999999999999999999999999999999999853

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.3e-36  Score=268.71  Aligned_cols=227  Identities=21%  Similarity=0.248  Sum_probs=193.7

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--c
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--V   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--~   81 (235)
                      +...++|++++..|++|..|+...++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|.+...  .
T Consensus       269 ~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  348 (628)
T TIGR02316       269 FGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWL  348 (628)
T ss_pred             cCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCccc
Confidence            4456679999999999999987788999999999999863    478999999999999999999999998887643  2


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCC--CCCCCCCcccccCCCcEEEEEeCC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF--AGSRNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~--~~~~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      ...+++++|.++++|+++++++.+++.+.++ ..+++.||+||++.........  ......+++|+|+++++++++|++
T Consensus       349 ~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~-~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~  427 (628)
T TIGR02316       349 RKHDLSSLHWLFLAGEPLDEPTAHWITDGLG-KPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEA  427 (628)
T ss_pred             ccCCccceeEEEEecCCCCHHHHHHHHHHhC-CCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECC
Confidence            3446889999999999999999999999886 8899999999998543322211  112345778999999999999977


Q ss_pred             CCccCCCCCceEEEEEcC---cccccccCCcccccccc---cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          160 TQKPLPPNQLGEIWLRGP---NMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       160 ~~~~v~~g~~Gel~v~~~---~~~~~y~~~~~~~~~~~---~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      +|++++.|+.|||++++|   ..+.+|+++++.+.+.+   ..++||+|||+|++|++|++++.||+||+||++|++|+|
T Consensus       428 ~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~  507 (628)
T TIGR02316       428 TGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGT  507 (628)
T ss_pred             CCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCH
Confidence            899999999999999998   46789999888766544   257799999999999999999999999999999999998


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      +|
T Consensus       508 ~e  509 (628)
T TIGR02316       508 RE  509 (628)
T ss_pred             HH
Confidence            64

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=3.9e-37  Score=273.02  Aligned_cols=220  Identities=27%  Similarity=0.430  Sum_probs=180.3

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcC-----------
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG-----------   79 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~-----------   79 (235)
                      .++|++++++|++|.++... .+.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+..           
T Consensus       264 ~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~  341 (660)
T PLN02861        264 TEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLR  341 (660)
T ss_pred             CCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHH
Confidence            46799999999999999854 556899999998874 58999999999999999999999998876410           


Q ss_pred             --------------------------CcCCC-------CC-CCceEEEecccCCcHHHHHHHHHhCCCCceecccccccc
Q 026632           80 --------------------------LVKKF-------DL-SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET  125 (235)
Q Consensus        80 --------------------------~~~~~-------~l-~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  125 (235)
                                                .....       .+ .++|.+++||+++++++.+ |.+.++...+++.||+||+
T Consensus       342 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~  420 (660)
T PLN02861        342 KKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTES  420 (660)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhh
Confidence                                      00000       01 4789999999999999855 6666664579999999999


Q ss_pred             ccccccccCCCCCCCCCcccccCCCcEEEEEeC-CCC-ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecC
Q 026632          126 SGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTG  203 (235)
Q Consensus       126 g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~-~~~-~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~Tg  203 (235)
                      ++.++...... ....+++|+|+++++++++|. +.| ..+++++.|||+++||.++.||+++|+.+.+.| .+|||+||
T Consensus       421 ~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f-~dGw~~TG  498 (660)
T PLN02861        421 CGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVL-IDGWFHTG  498 (660)
T ss_pred             hhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhh-hccCcccC
Confidence            87555332221 234578999999999999983 334 445567789999999999999999999999999 68999999


Q ss_pred             ceEEEcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          204 DLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       204 Dl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      |+|++|++|+++|.||+||+||+ +|++|+|+|
T Consensus       499 Dlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~e  531 (660)
T PLN02861        499 DIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVEN  531 (660)
T ss_pred             ceEEECCCCcEEEEeccccceEcCCCeEEcHHH
Confidence            99999999999999999999997 799999974

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-36  Score=267.43  Aligned_cols=227  Identities=30%  Similarity=0.402  Sum_probs=195.8

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--   81 (235)
                      +...++|++++..|++|..++...++.+|..|+++++.+.    +++..+++.++++++|++.++|++++.|.+....  
T Consensus       282 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  361 (637)
T PRK00174        282 FDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHP  361 (637)
T ss_pred             cCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCccc
Confidence            3455679999999999999987789999999999999753    4799999999999999999999999999886543  


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCCC--CceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      ....++++|.++.+|+++++++.+++.+.++.  +.+++.||+||++.+...........+.+.+|+|+++++++++|+ 
T Consensus       362 ~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~-  440 (637)
T PRK00174        362 KKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDE-  440 (637)
T ss_pred             ccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECC-
Confidence            23457899999999999999999999998863  789999999999976554322212334568999999999999994 


Q ss_pred             CCccCCCCCceEEEEEc--CcccccccCCccccccccc--CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          160 TQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       160 ~~~~v~~g~~Gel~v~~--~~~~~~y~~~~~~~~~~~~--~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++++.|+.|||++++  |+++.||+++++.+.+.+.  .+|||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       441 ~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~e  520 (637)
T PRK00174        441 EGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE  520 (637)
T ss_pred             CCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHH
Confidence            78999999999999999  6899999999988776652  4789999999999999999999999999999999999864

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.6e-36  Score=265.93  Aligned_cols=224  Identities=29%  Similarity=0.503  Sum_probs=191.4

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCC---C---HHHHHHHHHhccceEEeecHHHHHHHHhcCCc
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---D---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~---~---~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~   81 (235)
                      +...++|++++.+|++|..++...++.++..|+++++.++.   +   ...+++.++++++|++.++|+++..+.+....
T Consensus       249 ~~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  328 (632)
T PRK07529        249 LGLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD  328 (632)
T ss_pred             cCCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc
Confidence            33467799999999999999988899999999999997642   2   36889999999999999999999999887533


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeC-CC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DT  160 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~-~~  160 (235)
                       ..+++++|.+++||+++++++.+++.+.++ +++++.||+||+++++...+.. .....+++|.|+|+..++++.. ++
T Consensus       329 -~~~~~slr~v~~gg~~l~~~l~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d~~  405 (632)
T PRK07529        329 -GHDISSLRYALCGAAPLPVEVFRRFEAATG-VRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILDDA  405 (632)
T ss_pred             -CCCccceEEEEEcCCCCCHHHHHHHHHHhC-CcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcCCC
Confidence             346789999999999999999999999886 9999999999998766544322 2345678999999999888632 34


Q ss_pred             C---ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          161 Q---KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       161 ~---~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +   ++++.|+.|||+++||.++.||++++. +...+..++||+|||+|+++++|++++.||+||+|+++|++|+|++
T Consensus       406 g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~e  482 (632)
T PRK07529        406 GRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAA  482 (632)
T ss_pred             CcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHH
Confidence            5   789999999999999999999998654 4555557899999999999999999999999999999999999864

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-36  Score=262.24  Aligned_cols=225  Identities=33%  Similarity=0.487  Sum_probs=203.1

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...++|++++.+|++|.+++...++.++..|+++++.+..+++.+++.++++++|++.++|+++..+.+........+++
T Consensus       208 ~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  287 (523)
T PRK08316        208 DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSS  287 (523)
T ss_pred             CCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCccc
Confidence            35567999999999999999777778899999999998889999999999999999999999999999887666667889


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++.||++++.++.+.+++.+++.++++.||+||++.++............+++|+|++++++++.|+ ++++++.|+
T Consensus       288 l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~  366 (523)
T PRK08316        288 LRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDD-DGNDVAPGE  366 (523)
T ss_pred             ceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcC-CCCCCCCCC
Confidence            9999999999999999999999977999999999999987766443322344578899999999999995 789999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++++.++.+|+++++.+++.| .++||+|||+|+++++|.+++.||+||+|+.+|++|+|++
T Consensus       367 ~Gei~v~~~~~~~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~  432 (523)
T PRK08316        367 VGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASRE  432 (523)
T ss_pred             cceEEEECCchhhhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHH
Confidence            99999999999999999999888887 7899999999999999999999999999999999999863

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=3.5e-36  Score=261.61  Aligned_cols=223  Identities=22%  Similarity=0.291  Sum_probs=195.9

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ....+|++++++|++|..|+...++.++..|+++++.+.+++..+++.+++++++++.++|+++..+.+........+++
T Consensus       232 ~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~  311 (538)
T TIGR03208       232 ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPS  311 (538)
T ss_pred             CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCc
Confidence            34567999999999999998888999999999999998899999999999999999999999999888765544556789


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++++|+++++++.+++.+.++ +.+++.||+||++.+................|+|.+++.++++|+ ++++++.|+
T Consensus       312 l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~-~~~~~~~g~  389 (538)
T TIGR03208       312 LFTFLCAGAPIPGILVERAWELLG-ALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDA-NGAKLSQGE  389 (538)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHcC-CeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECC-CCCCCcCCC
Confidence            999999999999999999999886 899999999999877654432211222346899999999999995 788999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++++.++.||+++++.+..  ..++||+|||+++++++|++++.||+||+|+.+|++|+|.+
T Consensus       390 ~Gel~v~g~~~~~gy~~~~~~~~~--~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~e  454 (538)
T TIGR03208       390 TGRLLVRGCSNFGGYLKRPHLNST--DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVE  454 (538)
T ss_pred             CcEEEEecCcccccccCCcccccc--cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHH
Confidence            999999999999999999887653  47899999999999999999999999999999999999864

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.6e-36  Score=262.58  Aligned_cols=228  Identities=29%  Similarity=0.476  Sum_probs=202.1

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEE-ccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL-MAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~-~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|+++..+|++|..|+...++.++..|+++++ ...+++..+++.++++++|.++++|+++..++.........+
T Consensus       235 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~  314 (559)
T PRK08315        235 MKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDL  314 (559)
T ss_pred             cCCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCc
Confidence            4456679999999999999998889999999999995 456799999999999999999999999998888766666678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC-CCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      +++|.++.+|+++++++.+.+.+.++..++++.||+||++.+++...... .......+|+|++++.++++|++++++++
T Consensus       315 ~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~  394 (559)
T PRK08315        315 SSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVP  394 (559)
T ss_pred             hhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCC
Confidence            99999999999999999999999998667999999999998766543221 12345688999999999999987799999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++++.++.||++++..+...+..++||+|||+++++++|.+++.||.||+|+.+|++|+|++
T Consensus       395 ~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~e  464 (559)
T PRK08315        395 RGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPRE  464 (559)
T ss_pred             CCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHH
Confidence            9999999999999999999999988888767899999999999999999999999999999999999863

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=2.9e-36  Score=262.53  Aligned_cols=223  Identities=41%  Similarity=0.752  Sum_probs=196.3

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC--Cce
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS--SLK   90 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~--~lr   90 (235)
                      .++.+.++|++|.+|+...++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+........+.  ++|
T Consensus       227 ~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~  306 (546)
T PLN02330        227 QVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQ  306 (546)
T ss_pred             ceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheee
Confidence            468999999999999977888999999999999999999999999999999999999999999886554443443  578


Q ss_pred             EEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---CCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           91 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        91 ~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      .++.+|+++++++++++.+.|+++++++.||+||++++.........   ......+|.|+++++++++|++++++++.|
T Consensus       307 ~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g  386 (546)
T PLN02330        307 AIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKN  386 (546)
T ss_pred             eEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCC
Confidence            99999999999999999999977999999999999865543211110   123357899999999999998889999999


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||+++++.++.||+++++.+.+.++.+|||+|||+++++++|.+++.||.+|+|+++|++|+|.+
T Consensus       387 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~  454 (546)
T PLN02330        387 TPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAE  454 (546)
T ss_pred             CceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHH
Confidence            99999999999999999999999888878999999999999999999999999999999999999863

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.1e-36  Score=261.35  Aligned_cols=219  Identities=28%  Similarity=0.529  Sum_probs=194.9

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceE
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (235)
                      .+++++.+|++|.+++...++.++..|++.++.+ +.++..+++.++++++|+++++|+++..+.+........++++|.
T Consensus       251 ~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~  330 (562)
T PRK05677        251 CEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKL  330 (562)
T ss_pred             ccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceE
Confidence            4789999999999999777888888888777665 568999999999999999999999999998866555556789999


Q ss_pred             EEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceE
Q 026632           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (235)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Ge  171 (235)
                      ++.||+++++++.+.+.+.++ +++++.||+||+++++......  ..+.+++|.|+++++++++|+ ++++++.|+.||
T Consensus       331 v~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~d~-~~~~~~~g~~Ge  406 (562)
T PRK05677        331 TLSGGMALQLATAERWKEVTG-CAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVIDD-DGNELPLGEVGE  406 (562)
T ss_pred             EEEcCccCCHHHHHHHHHHcC-CCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEECC-CCCCCCCCCCeE
Confidence            999999999999999999886 8999999999998776544332  334567999999999999996 689999999999


Q ss_pred             EEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       172 l~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |++++|.++.||+++++.+.+.|..++||+|||+++++++|++++.||++|+|+++|++|+|+|
T Consensus       407 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~e  470 (562)
T PRK05677        407 LCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNE  470 (562)
T ss_pred             EEEecCccchhhcCCchhhhhccCCCCcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHH
Confidence            9999999999999999999999877999999999999999999999999999999999999864

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-36  Score=262.64  Aligned_cols=224  Identities=29%  Similarity=0.416  Sum_probs=196.9

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~   84 (235)
                      +...++|++++..|++|.+|+...++.++..|+++++.+ .+++..+++.++++++|+++++|++++.+.+....  ...
T Consensus       241 ~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  320 (570)
T PRK04319        241 LDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKY  320 (570)
T ss_pred             cCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccC
Confidence            345567999999999999998788999999999999875 57999999999999999999999999999876432  234


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v  164 (235)
                      .++++|.++++|+++++++.+++.+.++ .++++.||+||++.++...... .....+++|+|+++++++++|+ +++++
T Consensus       321 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g-~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d~-~~~~~  397 (570)
T PRK04319        321 DLSSLRHILSVGEPLNPEVVRWGMKVFG-LPIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVDD-QGNEL  397 (570)
T ss_pred             CcccceEEEEcccCCCHHHHHHHHHHhC-CCeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEECC-CCCCC
Confidence            5789999999999999999999999886 8999999999999765543222 1344578999999999999995 78888


Q ss_pred             CCCCceEEEEEc--CcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQLGEIWLRG--PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~Gel~v~~--~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|+.|||++++  |.++.||+++++.+.+.+ .+|||+|||+++++++|++++.||+||+|+++|++|+|.|
T Consensus       398 ~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~-~~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~e  469 (570)
T PRK04319        398 PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFE  469 (570)
T ss_pred             CCCCceEEEEcCCCChHHhHhcCCHHHhhhhh-cCCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHH
Confidence            999999999997  899999999999998888 5899999999999999999999999999999999999864

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.1e-36  Score=259.00  Aligned_cols=224  Identities=17%  Similarity=0.156  Sum_probs=182.6

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--cCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--~~~~   84 (235)
                      +....+|++++.+|++|..++ ..++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|.+...  ....
T Consensus       155 ~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~  233 (499)
T PLN03051        155 MDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGL  233 (499)
T ss_pred             cCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccC
Confidence            345567999999999999998 578899999999999874 788999999999999999999999999887643  3344


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCC-CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                      +++++|.+++||+++++++.+++.+.++ +..+++.||+||++......... .....+++|+|.++++++++|+ ++++
T Consensus       234 ~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~ivd~-~g~~  311 (499)
T PLN03051        234 DWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLL-QPQAPGAFSTASLGTRFVLLND-NGVP  311 (499)
T ss_pred             CchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccccc-CCCCCccccCCCCCceEEEECC-CCCC
Confidence            6789999999999999999988877432 27899999999987543322211 1234567999999999999994 7899


Q ss_pred             CCCC--CceEEEEEcCcc--cccccCCccccccccc--------CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEe
Q 026632          164 LPPN--QLGEIWLRGPNM--MRGYYNNEQATKLTID--------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  231 (235)
Q Consensus       164 v~~g--~~Gel~v~~~~~--~~~y~~~~~~~~~~~~--------~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v  231 (235)
                      ++.|  +.|||++++|.+  +.+|++++. +...+.        ...||+|||+|++|++|+++++||+||+||++|++|
T Consensus       312 ~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v  390 (499)
T PLN03051        312 YPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKT  390 (499)
T ss_pred             CCCCCCcceEEEEecCcCCCCccccCCcc-cceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEEC
Confidence            9988  579999999976  579997653 332221        122799999999999999999999999999999999


Q ss_pred             ecCC
Q 026632          232 TSNW  235 (235)
Q Consensus       232 ~p~~  235 (235)
                      +|.|
T Consensus       391 ~p~E  394 (499)
T PLN03051        391 SSVE  394 (499)
T ss_pred             CHHH
Confidence            9864

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=7.3e-36  Score=259.03  Aligned_cols=225  Identities=26%  Similarity=0.384  Sum_probs=197.1

Q ss_pred             ccCCCCcEEEEecChhHHHhHHH-HHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +....+|++++.+|++|.+++.. .++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+..+.....+
T Consensus       219 ~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~  298 (527)
T TIGR02275       219 CWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDL  298 (527)
T ss_pred             cCCCcCCEEEECCChHhhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCc
Confidence            34456799999999999999854 47889999999999888899999999999999999999999999988776666678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccC-CCcEEEEEeCCCCccCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPLP  165 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~d~~~~~~v~  165 (235)
                      +++|.+++||+++++++.+++.+.++ +++++.||+||++...... .........++|+|+ ++..++++|+ ++++++
T Consensus       299 ~~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~v~i~d~-~g~~~~  375 (527)
T TIGR02275       299 SSLKLLQVGGAKFSEAAARRVPAVFG-CQLQQVFGMAEGLVNYTRL-DDPAEIIFTTQGRPMSPDDEVRVVDD-HGNPVA  375 (527)
T ss_pred             cceEEEEEcCCCCCHHHHHHHHHHhC-CeEEeeeccCccCccccCC-CCccccccccCCCCCCCCceEEEECC-CCCCCC
Confidence            89999999999999999999999886 8999999999976443321 111133446789999 4789999995 789999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++++.++.||+++++.+...+..++||+|||+++++++|++++.||.||+|+.+|++|+|.+
T Consensus       376 ~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~e  445 (527)
T TIGR02275       376 PGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEE  445 (527)
T ss_pred             CCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHH
Confidence            9999999999999999999999999988888999999999999999999999999999999999999864

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.3e-36  Score=261.82  Aligned_cols=221  Identities=33%  Similarity=0.511  Sum_probs=199.5

Q ss_pred             CCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceE
Q 026632           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (235)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (235)
                      .++++++.+|++|.+|+...+..++..|+++++.+.++++.+++.++++++|++.++|++++.+.+........++++|.
T Consensus       261 ~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  340 (573)
T PRK05605        261 GPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRN  340 (573)
T ss_pred             CCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccE
Confidence            46899999999999999777888899999999998889999999999999999999999999999887767777899999


Q ss_pred             EEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCC-CccCCCCCce
Q 026632           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPLPPNQLG  170 (235)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~-~~~v~~g~~G  170 (235)
                      ++.||+++++++.+.+.+.++ ..+++.||+||+++++...... .....+.+|+|.++..++++|+++ +++++.|+.|
T Consensus       341 i~~gg~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~G  418 (573)
T PRK05605        341 AFSGAMALPVSTVELWEKLTG-GLLVEGYGLTETSPIIVGNPMS-DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEG  418 (573)
T ss_pred             EEECCCcCCHHHHHHHHHHhC-CCeecccccchhchhhhcCCcc-cCCcCCccccCCCCCEEEEEcCCCCCccCCCCCee
Confidence            999999999999999998886 8999999999999876654322 133456899999999999999766 6899999999


Q ss_pred             EEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          171 EIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       171 el~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ||+++++.++.+|+++++.+.+.| .+|||+|||+++++++|++++.||+||+++.+|++|+|++
T Consensus       419 el~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~e  482 (573)
T PRK05605        419 ELLVRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAE  482 (573)
T ss_pred             EEEEecCchhhhhcCChhHhhhcc-cCCCcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHH
Confidence            999999999999999999998888 5679999999999999999999999999999999999864

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-36  Score=256.39  Aligned_cols=220  Identities=22%  Similarity=0.331  Sum_probs=193.7

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|+++...|++|..++ ..++.+++.|+++++.+.+++..+++.++++++|++.++|+++..+.+...    ...
T Consensus       179 ~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~  253 (487)
T PRK07638        179 FHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIE  253 (487)
T ss_pred             cCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCC
Confidence            345677999999999999887 678899999999999999999999999999999999999999999987632    234


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      +.+.++.+|+++++++.+++.+.|++.++++.||+||++.++..... ........+|+|++++.++++|+ ++++++.|
T Consensus       254 ~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~-~g~~~~~g  331 (487)
T PRK07638        254 NKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDE-ESERRPNSVGRPFHNVQVRICNE-AGEEVQKG  331 (487)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEeccc-ccCCCCCCCCcccCCcEEEEECC-CCCCCCCC
Confidence            56677889999999999999999988999999999999987665432 22445568999999999999995 78999999


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||+++++.++.||+++++.+.+.+ .+|||+|||++++|++|++++.||++|+|+++|++|+|.+
T Consensus       332 ~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~e  398 (487)
T PRK07638        332 EIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEE  398 (487)
T ss_pred             CCeEEEEecccceeeecCCHHHHhhhc-cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHH
Confidence            999999999999999999988776654 7899999999999999999999999999999999999853

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=6.4e-36  Score=257.86  Aligned_cols=223  Identities=31%  Similarity=0.479  Sum_probs=199.1

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      ....++|++++.+|++|..|+...++.++..|+++++.+..++..+++.+.  ++|++.++|+++..+++........++
T Consensus       192 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~  269 (504)
T PRK07514        192 WRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAA  269 (504)
T ss_pred             hCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCccccc
Confidence            345667999999999999999778889999999999999899999999994  699999999999999887766666788


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.++.||+++++++.+.+.+.++ .++++.||+||++.......  ........+|.|+++++++++|++++++++.|
T Consensus       270 ~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~--~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g  346 (504)
T PRK07514        270 HMRLFISGSAPLLAETHREFQERTG-HAILERYGMTETNMNTSNPY--DGERRAGTVGFPLPGVSLRVTDPETGAELPPG  346 (504)
T ss_pred             ceeeEEecCCCCCHHHHHHHHHHhC-CcceeecccccccccccCCc--cccccCcccccCCCCcEEEEEECCCCCCCCCC
Confidence            9999999999999999999999886 89999999999986544322  11334567899999999999998899999999


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||+++++.++.||+++++.+++.|..++||+|||+++++++|.+++.||+||+|+++|++|+|.+
T Consensus       347 ~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~  414 (504)
T PRK07514        347 EIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKE  414 (504)
T ss_pred             CceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHH
Confidence            99999999999999999999999988877899999999999999999999999999999999999864

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.6e-35  Score=258.39  Aligned_cols=227  Identities=31%  Similarity=0.512  Sum_probs=201.2

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++..|++|.+|+...++.++..|+++++.. .+++..+++.++++++|++.++|+++..+.+.......++
T Consensus       237 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~  316 (558)
T PRK12583        237 LGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDL  316 (558)
T ss_pred             hCCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCc
Confidence            344567999999999999999889999999999999754 5789999999999999999999999988887766666678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC-CCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      +++|.++.+|+++++++.+++.+.++...+++.||+||+++++....... .......+|+|.+++.++++|++ +++++
T Consensus       317 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~-~~~~~  395 (558)
T PRK12583        317 SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPD-GATVP  395 (558)
T ss_pred             hhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCC-CCCCC
Confidence            99999999999999999999999998678999999999998776543221 12345688999999999999975 89999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++++.++.||++++..+...+..++||+|||+++++++|++++.||+||+|+.+|.+|+|++
T Consensus       396 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~  465 (558)
T PRK12583        396 RGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPRE  465 (558)
T ss_pred             CCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECCCccEEEEecccceeEECCEEeCHHH
Confidence            9999999999999999999999988887777899999999999999999999999999999999999863

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-35  Score=254.26  Aligned_cols=222  Identities=29%  Similarity=0.442  Sum_probs=194.6

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++.+|++|..|++..++.++..|+++++.+.+++..+++.++ ++++++.++|+++..+.+.... ...++
T Consensus       164 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~~~l~  241 (471)
T PRK07787        164 WQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEA-ARALR  241 (471)
T ss_pred             cCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCccc-ccccc
Confidence            445567999999999999999888999999999999998899999999999 9999999999999999875433 23578


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC-C
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP-P  166 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~-~  166 (235)
                      ++|.++.||+++++++.+++.+.++ .++++.||+||++........  .....+.+|+|+++++++++|+ ++++++ .
T Consensus       242 ~l~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d~-~~~~~~~~  317 (471)
T PRK07787        242 GARLLVSGSAALPVPVFDRLAALTG-HRPVERYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVDE-DGGPVPHD  317 (471)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHcC-CCeecccCccccCcceecCCC--CcccCCcccccCCCcEEEEECC-CCCCCCCC
Confidence            9999999999999999999999886 899999999999865443322  2344568999999999999996 577786 4


Q ss_pred             CC-ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEecc-CCceEeccEEeecCC
Q 026632          167 NQ-LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI-KELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~-~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~-~d~i~~~G~~v~p~~  235 (235)
                      |+ .|||+++|+.++.+|+++++.+.+.+..++||+|||+++++++|++++.||+ ||+++.+|++|+|.+
T Consensus       318 ~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~e  388 (471)
T PRK07787        318 GETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGE  388 (471)
T ss_pred             CCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHH
Confidence            54 7999999999999999999999998877899999999999999999999996 899999999999864

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-35  Score=265.09  Aligned_cols=220  Identities=20%  Similarity=0.295  Sum_probs=191.8

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...+.|++++..|++|.+++...++.++..|+++++.+ .+++..+++.++++++|+++++|+++..+.+...  ...+
T Consensus       182 ~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~  259 (705)
T PRK06060        182 LRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSF  259 (705)
T ss_pred             hCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccc
Confidence            345567999999999999998777889999999999987 4688999999999999999999999999887543  2356


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.||+++++++.+.+.+.|++.++++.||+||++.+.......  ......+|+|+++++++++|+ ++++++.
T Consensus       260 ~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d~-~g~~~~~  336 (705)
T PRK06060        260 RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVAP-DGTTAGP  336 (705)
T ss_pred             cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCC--CCCcCcccccCCCcEEEEECC-CCCCCCC
Confidence            8999999999999999999999999878999999999998655433221  234567899999999999995 7899999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+++|+.++.||+++++.+.   ..++||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       337 g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~e  402 (705)
T PRK06060        337 GVEGDLWVRGPAIAKGYWNRPDSPV---ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPRE  402 (705)
T ss_pred             CCceEEEEccchhhhhhhCCCcccc---cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHH
Confidence            9999999999999999999988653   35789999999999999999999999999999999999864

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.5e-35  Score=258.13  Aligned_cols=225  Identities=28%  Similarity=0.411  Sum_probs=198.7

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      ....++|++++.+|++|.+|++..++.+++.|+++++.+.+++..+++.++++++++++++|+.+..+++........++
T Consensus       223 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~  302 (547)
T PRK06087        223 LNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLS  302 (547)
T ss_pred             cCCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCC
Confidence            34567799999999999999988899999999999999999999999999999999999998888888877655566788


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.++.||+++++++.+.+.+.  ++++++.||+||++++................|.|++++.++++| +++++++.|
T Consensus       303 ~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g  379 (547)
T PRK06087        303 ALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPG  379 (547)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCC
Confidence            99999999999999999988765  599999999999998766543222123345689999999999999 478999999


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||+++++.++.||+++++.+...+..++||+|||+++++++|++++.||.+|+|+.+|++|+|.+
T Consensus       380 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~  447 (547)
T PRK06087        380 CEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSRE  447 (547)
T ss_pred             CcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHH
Confidence            99999999999999999999998888877899999999999999999999999999999999999853

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.2e-35  Score=253.25  Aligned_cols=221  Identities=33%  Similarity=0.484  Sum_probs=193.2

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++.+|++|.+++ ..++.++..|+++++.+..++..+++.++++++|++.++|+++..+.+..... ....
T Consensus       177 ~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~  254 (483)
T PRK03640        177 LGLTEDDCWLAAVPIFHISGL-SILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPS  254 (483)
T ss_pred             cCCCcCcEEEEecCHHHHHHH-HHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCC
Confidence            345677999999999999998 56788899999999999999999999999999999999999999998764333 2346


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.++.+|+++++++.+.+++.  ++++++.||+||++..+............+.+|+|++++++++.++  +++++.|
T Consensus       255 ~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~--~~~~~~g  330 (483)
T PRK03640        255 SFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD--GVVVPPF  330 (483)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecC--CCcCCCC
Confidence            89999999999999999998875  5999999999999865444333322345678999999999999884  4889999


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||++++|.++.||+++++.+...+ .++||+|||+++++++|.+++.||+||++|.+|++|+|.+
T Consensus       331 ~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~  397 (483)
T PRK03640        331 EEGEIVVKGPNVTKGYLNREDATRETF-QDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAE  397 (483)
T ss_pred             CceEEEEECcchhhhhcCCHHHHHHHH-hcCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHH
Confidence            999999999999999999999888887 7899999999999999999999999999999999999853

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.3e-35  Score=257.22  Aligned_cols=220  Identities=30%  Similarity=0.462  Sum_probs=185.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-------CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-------KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-------~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~   80 (235)
                      +...++|+.++++|++|.+++        ..|+++++.+       .+++..+++.++++++|+++++|+++..|.+...
T Consensus       210 ~~~~~~~~~~~~~pl~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  281 (552)
T PRK09274        210 YGIEPGEIDLPTFPLFALFGP--------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGE  281 (552)
T ss_pred             hCCCCCceeeeccCHHHhhhh--------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhh
Confidence            345567999999999987654        3477777754       3589999999999999999999999999998766


Q ss_pred             cCCCCCCCceEEEecccCCcHHHHHHHHHhCCC-CceeccccccccccccccccCC------C--CCCCCCcccccCCCc
Q 026632           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-ATVIQGYGLTETSGIATMENSF------A--GSRNIGSAGALAPGV  151 (235)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~-~~i~~~yG~tE~g~~~~~~~~~------~--~~~~~~~~g~p~~~~  151 (235)
                      .....++++|.+++||+++++++.+++.+.|+. +++++.||+||+++++......      .  .......+|+|++++
T Consensus       282 ~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~  361 (552)
T PRK09274        282 ANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGV  361 (552)
T ss_pred             hcCCCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCc
Confidence            566678999999999999999999999999973 7999999999998765543211      0  011123589999999


Q ss_pred             EEEEEeCC--------CCccCCCCCceEEEEEcCcccccccCCcccccccc--cCCC--eEecCceEEEcCCCcEEEEec
Q 026632          152 EALIVSVD--------TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI--DKKG--WVHTGDLGYFDGDGQLYVVDR  219 (235)
Q Consensus       152 ~~~~~d~~--------~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~--~~~g--~~~TgDl~~~~~~g~~~~~GR  219 (235)
                      +++++|++        ++++++.|+.|||++++|.++.||+++++.+...+  +.+|  ||+|||+|++|++|++++.||
T Consensus       362 ~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR  441 (552)
T PRK09274        362 EVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGR  441 (552)
T ss_pred             eEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEec
Confidence            99999953        46789999999999999999999999999887765  3456  999999999999999999999


Q ss_pred             cCCceEeccEEeecCC
Q 026632          220 IKELIKYKGFQVTSNW  235 (235)
Q Consensus       220 ~~d~i~~~G~~v~p~~  235 (235)
                      .||+|+++|++|+|+|
T Consensus       442 ~~d~i~~~G~~v~p~e  457 (552)
T PRK09274        442 KAHRVETAGGTLYTIP  457 (552)
T ss_pred             cCCeEEECCEEECcHH
Confidence            9999999999999975

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.4e-35  Score=255.41  Aligned_cols=218  Identities=25%  Similarity=0.376  Sum_probs=189.4

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCCCCC
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLS   87 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~l~   87 (235)
                      ...+|+++..+|++|.+|+ ..++.++..|+++++.+.++++.+++.++++++|++.++|+++..+++....  ...+++
T Consensus       234 ~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~  312 (537)
T PRK13382        234 WRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGR  312 (537)
T ss_pred             CCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCcc
Confidence            3467899999999999999 6788899999999999899999999999999999999999999999876432  223456


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.++.||+++++++++.+.+.++ ..+++.||+||++.++...... .....+++|+|.++++++++|+ ++++++.|
T Consensus       313 ~lr~i~~gG~~l~~~~~~~~~~~~~-~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g  389 (537)
T PRK13382        313 SLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILDQ-DFREVPTG  389 (537)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHHHcC-CcEEecccccccCcceecChhH-hccCCCCccccCcCcEEEEECC-CCCCCCCC
Confidence            8999999999999999999999997 7899999999999766543321 2345578999999999999996 78999999


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||++++|.++.||+  ++.+.. + .+|||+|||+++++++|++++.||+||+|+++|++|+|.+
T Consensus       390 ~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~e  453 (537)
T PRK13382        390 EVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIE  453 (537)
T ss_pred             CeeEEEEEcCCcccCcc--ccchhh-c-cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHH
Confidence            99999999999999998  444443 3 4799999999999999999999999999999999999863

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-35  Score=257.56  Aligned_cols=221  Identities=39%  Similarity=0.700  Sum_probs=196.3

Q ss_pred             CCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceE
Q 026632           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (235)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (235)
                      .++++++++|++|.+|+...+..++..|+++++.+++++..+++.++++++|++.++|+++..+.+........++++|.
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~  327 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRA  327 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhh
Confidence            34788999999999998777778999999999998899999999999999999999999999998876555556789999


Q ss_pred             EEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceE
Q 026632           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (235)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Ge  171 (235)
                      ++.||+++++++.+++.+.++ .++++.||+||++.++...... .....+..|+|+++..+++++++++++++.|+.||
T Consensus       328 v~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Ge  405 (563)
T PRK06710        328 CISGSAPLPVEVQEKFETVTG-GKLVEGYGLTESSPVTHSNFLW-EKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGE  405 (563)
T ss_pred             eeeCCCcCCHHHHHHHHHhhC-CCEecccccccCccccccCccc-ccccCCccCCCCCCCeEEEEECCCCccCCCCCceE
Confidence            999999999999999999885 8999999999999765433221 12334678999999999999988899999999999


Q ss_pred             EEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       172 l~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+++++.++.+|+++++.+...+ .+|||+|||+++++++|++++.||.||+|+++|.+|+|++
T Consensus       406 l~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~e  468 (563)
T PRK06710        406 IVVKGPQIMKGYWNKPEETAAVL-QDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPRE  468 (563)
T ss_pred             EEEecCccchhhhCChHHHhhhc-ccCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHH
Confidence            99999999999999999988877 6899999999999999999999999999999999999864

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.4e-35  Score=255.69  Aligned_cols=221  Identities=31%  Similarity=0.492  Sum_probs=195.4

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      .++|++++..|++|.+|+ ..++.++..|+++++.+  .+++..+++.++++++|.++++|+++..+++........ .+
T Consensus       214 ~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~  291 (542)
T PRK07786        214 INSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LA  291 (542)
T ss_pred             CCCceEEEecchHHHHHH-HHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cc
Confidence            456999999999999998 68889999999999875  579999999999999999999999999998875543322 37


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++.||+++++++++.+.+.|++.++++.||+||++.+...............+|+|++++.++++|+ +++.++.|+
T Consensus       292 lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~g~  370 (542)
T PRK07786        292 LRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDE-NMNDVPVGE  370 (542)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECC-CCCCCcCCC
Confidence            9999999999999999999999988999999999999977664433322345578999999999999995 789999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++++.++.||+++++.+...| .++||+|||+++++++|++++.||.||+|+++|++|+|++
T Consensus       371 ~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~e  436 (542)
T PRK07786        371 VGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAE  436 (542)
T ss_pred             ceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCCEEECHHH
Confidence            99999999999999999999998888 6899999999999999999999999999999999999864

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.9e-35  Score=251.04  Aligned_cols=223  Identities=28%  Similarity=0.451  Sum_probs=194.3

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHH--hccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIE--KHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~--~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      ...+|++++.+|++|.+|+...++.++..|+++++.+.+++..++..+.  ++++|.++++|+++..+.+........++
T Consensus       173 ~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  252 (488)
T PRK09088        173 VDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALR  252 (488)
T ss_pred             CCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccc
Confidence            4567999999999999999888889999999999998889999998886  47899999999999998876655555678


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCC-CCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      ++|.++.||++++.+..+.+.+.  ++++++.||+||++.+....... ....+.+++|.|+++++++++|+ ++++++.
T Consensus       253 ~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~-~~~~~~~  329 (488)
T PRK09088        253 HLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDD-QGNDCPA  329 (488)
T ss_pred             cceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECC-CCCCCcC
Confidence            99999999999999998888765  58999999999998754322111 11234567999999999999995 7899999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||++++|.++.||+++++.+++.+..+|||+|||+++++++|.+++.||.||+|+.+|++|+|++
T Consensus       330 g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~  398 (488)
T PRK09088        330 GVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAE  398 (488)
T ss_pred             CCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHH
Confidence            999999999999999999999999888877999999999999999999999999999999999999864

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6e-35  Score=255.13  Aligned_cols=220  Identities=32%  Similarity=0.557  Sum_probs=194.8

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceE
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (235)
                      ++++++.+|++|.+++....+..+..|+..++.. +.++..+++.++++++|.+.++|+++..+.+........++++|.
T Consensus       258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~  337 (562)
T PRK12492        258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKL  337 (562)
T ss_pred             CeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeE
Confidence            3678999999999999777788888888776654 568999999999999999999999999999877666667889999


Q ss_pred             EEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceE
Q 026632           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (235)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Ge  171 (235)
                      +++||+++++++.+.+.+.++ +++++.||+||++.++...... .....+.+|+|+++++++++|+ +++++++|+.||
T Consensus       338 ~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~v~ivd~-~~~~~~~g~~Ge  414 (562)
T PRK12492        338 TNSGGTALVKATAERWEQLTG-CTIVEGYGLTETSPVASTNPYG-ELARLGTVGIPVPGTALKVIDD-DGNELPLGERGE  414 (562)
T ss_pred             EEeccccCCHHHHHHHHHHhC-CceeeccCccccCceeeecCCc-ccccCCccceecCCCEEEEECC-CCCCCCCCCceE
Confidence            999999999999999999886 9999999999998876544322 1334567899999999999996 789999999999


Q ss_pred             EEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       172 l~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+++++.++.||+++++.+.+.|..++||+|||+++++++|++++.||.||+|+++|++|+|++
T Consensus       415 l~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~e  478 (562)
T PRK12492        415 LCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNE  478 (562)
T ss_pred             EEEeCCccccccccCchhhhhcccCCCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHH
Confidence            9999999999999999999888877899999999999999999999999999999999999864

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=1e-35  Score=253.21  Aligned_cols=218  Identities=32%  Similarity=0.487  Sum_probs=187.4

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCC------------
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL------------   80 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~------------   80 (235)
                      +|++++++|+.|++... .-...+..|+++.+..+ |+..+.+.|++.+||.+.++|.+++.+-+..+            
T Consensus       302 ~dv~lSyLPLAHi~er~-~~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~  379 (691)
T KOG1256|consen  302 DDVYLSYLPLAHIFERV-VELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRK  379 (691)
T ss_pred             CceEEEeCcHHHHHHHH-HHHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHH
Confidence            59999999999999995 55555588999999874 99999999999999999999998774332110            


Q ss_pred             --------------cCCCCC-------------------CCceEEEecccCCcHHHHHHHHHhCCCCceecccccccccc
Q 026632           81 --------------VKKFDL-------------------SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG  127 (235)
Q Consensus        81 --------------~~~~~l-------------------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~  127 (235)
                                    ..+...                   .++|.+++|++|+++++.+.++..++ +++++.||+||+.+
T Consensus       380 l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g-~~v~eGYGlTEts~  458 (691)
T KOG1256|consen  380 LFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG-CRVLEGYGLTETSA  458 (691)
T ss_pred             HHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC-ceeeecccccccCC
Confidence                          011111                   48999999999999999999999986 99999999999996


Q ss_pred             ccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEE
Q 026632          128 IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGY  207 (235)
Q Consensus       128 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~  207 (235)
                      .++.....  +...+++|.|+|+.+++++|+.+-+--..|..|||||+|+.++.||+++|+.|++.++.+||++|||+|+
T Consensus       459 g~~~~~~~--d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~  536 (691)
T KOG1256|consen  459 GTTLTLPG--DNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGE  536 (691)
T ss_pred             ceEeccCC--CCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChHHHhhhhcccccccccccee
Confidence            55554443  3478999999999999999987777777777899999999999999999999999999999999999999


Q ss_pred             EcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          208 FDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       208 ~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      ++++|.+.|+||+|+++|+ .|+.|.|++
T Consensus       537 ~~p~G~l~IidRkK~ifklaqGEyVaPe~  565 (691)
T KOG1256|consen  537 WDPNGTLKIIDRKKNIFKLAQGEYVAPEK  565 (691)
T ss_pred             ECCCccEEEEecccceEEcCCCCccChHH
Confidence            9999999999999999999 799999863

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-35  Score=260.07  Aligned_cols=227  Identities=24%  Similarity=0.336  Sum_probs=192.4

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc----CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA----KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~----~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--   81 (235)
                      +...++|++++..|++|..++...++.++..|+++++.+    .+++..+++.++++++|++.++|++++.+.+....  
T Consensus       270 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  349 (629)
T PRK10524        270 FGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALL  349 (629)
T ss_pred             cCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccc
Confidence            445667999999999999998778899999999999976    34789999999999999999999999988875432  


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCCCCceecccccccccccccc-ccC-CCCCCCCCcccccCCCcEEEEEeCC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-ENS-FAGSRNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~-~~~-~~~~~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      ...+++++|.++++|+++++++.+++.+.++ .++++.||+||++..... .+. .......+++|+|+++++++++|++
T Consensus       350 ~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~  428 (629)
T PRK10524        350 RKHDLSSLRALFLAGEPLDEPTASWISEALG-VPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEV  428 (629)
T ss_pred             cccChhheeEEEEeCCCCCHHHHHHHHHhcC-CCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCC
Confidence            3346789999999999999999999999886 899999999999843322 221 1112345688999999999999976


Q ss_pred             CCccCCCCCceEEEEEcC---cccccccCCccccccccc---CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          160 TQKPLPPNQLGEIWLRGP---NMMRGYYNNEQATKLTID---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       160 ~~~~v~~g~~Gel~v~~~---~~~~~y~~~~~~~~~~~~---~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      +|++++.|+.|||++++|   ..+.+|+++++.+...+.   .++||+|||+++++++|++++.||.||+||++|++|+|
T Consensus       429 ~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p  508 (629)
T PRK10524        429 TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGT  508 (629)
T ss_pred             CCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCH
Confidence            899999999999999998   477899999877665432   46899999999999999999999999999999999998


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      .|
T Consensus       509 ~e  510 (629)
T PRK10524        509 RE  510 (629)
T ss_pred             HH
Confidence            64

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-35  Score=253.70  Aligned_cols=223  Identities=34%  Similarity=0.527  Sum_probs=197.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++.+|++|.+|+  .++.+++.|+++++.+++++..+++.++++++|++.++|+++..+++........++
T Consensus       204 ~~~~~~~~~l~~~pl~~~~g~--~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~  281 (524)
T PRK06188        204 WEWPADPRFLMCTPLSHAGGA--FFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLS  281 (524)
T ss_pred             cCCCcCcEEEEecCchhhhhH--HHHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCc
Confidence            344567999999999999887  357889999999999999999999999999999999999999999988766666789


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC----CCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA----GSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~----~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                      ++|.++.||++++++..+.+.+.++ ..+++.||+||++.++.......    ......++|+|++++.++++|+ ++++
T Consensus       282 ~lr~~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~-~~~~  359 (524)
T PRK06188        282 SLETVYYGASPMSPVRLAEAIERFG-PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDE-DGRE  359 (524)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHHHhC-chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcC-CCCC
Confidence            9999999999999999999999887 77999999999976555432211    1234467899999999999996 6899


Q ss_pred             CCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|+.|||+++++.++.||++++..+...+ .+|||+|||+++++++|++++.||.+|+|+++|++|+|++
T Consensus       360 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~  430 (524)
T PRK06188        360 VAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPRE  430 (524)
T ss_pred             CCCCCeeEEEEECcchhhhhcCChHHhhhhh-cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHH
Confidence            9999999999999999999999999888887 7899999999999999999999999999999999999863

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=8.4e-35  Score=244.48  Aligned_cols=223  Identities=26%  Similarity=0.335  Sum_probs=194.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCC---HHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD---LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~---~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      +...+.|++++..|++|.+++ ..++.++..|+++++.++..   +..+.+.++++++|.+.++|++++.+.+...   .
T Consensus       156 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---~  231 (408)
T TIGR01733       156 YGLDPDDRVLQFASLSFDASV-EEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---P  231 (408)
T ss_pred             cCCCCCceEEEecCCccchhH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---h
Confidence            344567999999999999998 68899999999999987643   6889999999999999999999999988764   4


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC-CC--CCCcccccCCCcEEEEEeCCCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SR--NIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~-~~--~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      .++++|.++.+|+++++++.+++.+.++++.+++.||+||+++++........ ..  ....+|.|++++++++++++ +
T Consensus       232 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~-~  310 (408)
T TIGR01733       232 ALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDD-L  310 (408)
T ss_pred             cccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCC-C
Confidence            67899999999999999999999999987899999999999987753322211 11  25679999999999999975 8


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCcccccccccCC------C--eEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK------G--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~------g--~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      +++++|+.|||+++++.++.+|+++++.+.+.+...      +  ||+|||+++++++|++++.||.||+|+++|++|+|
T Consensus       311 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~  390 (408)
T TIGR01733       311 RPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIEL  390 (408)
T ss_pred             CCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEech
Confidence            999999999999999999999999999888777332      3  99999999999999999999999999999999998


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      ++
T Consensus       391 ~~  392 (408)
T TIGR01733       391 GE  392 (408)
T ss_pred             HH
Confidence            74

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.8e-36  Score=239.44  Aligned_cols=228  Identities=29%  Similarity=0.405  Sum_probs=203.6

Q ss_pred             eeeccCCCCcEEEEecChhHHHhHHH-HHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            5 DQETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         5 ~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      ...|...++++.++.+|..|-+-+.. ..+..++.|+++|+.+..+++.....|+++++|+...+|.+...+++..+...
T Consensus       222 aEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~  301 (542)
T COG1021         222 AEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWER  301 (542)
T ss_pred             hhhhCcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhccc
Confidence            34566677899999999999877632 46788999999999999999999999999999999999999999999888888


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccC-CCcEEEEEeCCCCc
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQK  162 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~d~~~~~  162 (235)
                      .+++++|.+=.||..+++++.+++...++ +.+-.+|||.|.-..-+.. .+..+....+-|+|+ |.-+++++| ++|+
T Consensus       302 ~~LsSLrllQVGGarl~~~~Arrv~~~lg-C~LQQVFGMAEGLvnyTRL-DDp~E~i~~TQGrPlsP~DEvrvvD-~dg~  378 (542)
T COG1021         302 ADLSSLRLLQVGGARLSATLARRVPAVLG-CQLQQVFGMAEGLVNYTRL-DDPPEIIIHTQGRPLSPDDEVRVVD-ADGN  378 (542)
T ss_pred             CCchheeEEeecCcccCHHHHhhchhhhC-chHHHHhhhhhhhhccccc-CCchHheeecCCCcCCCcceeEEec-CCCC
Confidence            89999999999999999999999999997 9999999999987554432 222244456778888 778999999 5999


Q ss_pred             cCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          163 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       163 ~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +|++||.|+|..+||..++|||+.|+-++..|+.+|+|+|||+++++++|++.+.||.||.||.+|+||..+|
T Consensus       379 pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeE  451 (542)
T COG1021         379 PVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEE  451 (542)
T ss_pred             CCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchhhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999997653

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=8.1e-35  Score=252.99  Aligned_cols=226  Identities=26%  Similarity=0.380  Sum_probs=195.2

Q ss_pred             eccCCCCcEEEEecChhHHHhHHH-HHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcC--CcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHG--LVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~--~~~~   83 (235)
                      .+...++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.+++++++++.++|+++..+++..  ....
T Consensus       217 ~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~  296 (536)
T PRK10946        217 ICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR  296 (536)
T ss_pred             hcCCCCCceEEEecCccccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc
Confidence            344567799999999999988743 5788899999999998889999999999999999999999999988763  2233


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccC-CCcEEEEEeCCCCc
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQK  162 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~d~~~~~  162 (235)
                      ..++++|.++.||+++++++.+.+.+.++ +++++.||+||+...... ..........++|.|+ +++.++++|+ +++
T Consensus       297 ~~~~~l~~v~~gg~~l~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~v~i~d~-~~~  373 (536)
T PRK10946        297 AQLASLKLLQVGGARLSETLARRIPAELG-CQLQQVFGMAEGLVNYTR-LDDSDERIFTTQGRPMSPDDEVWVADA-DGN  373 (536)
T ss_pred             ccccceeEEEECCCCCCHHHHHHHHHhcC-CeEEEeecccccceeeec-CCCccccccccCCcccCCCceEEEECC-CCC
Confidence            45789999999999999999999999886 999999999997543322 1111123456789998 7899999994 789


Q ss_pred             cCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          163 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       163 ~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++|+.|||+++|+.++.||+++++.+.+.+..++||+|||+++++++|++++.||.+|+|+++|++|+|.+
T Consensus       374 ~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~e  446 (536)
T PRK10946        374 PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEE  446 (536)
T ss_pred             CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHH
Confidence            9999999999999999999999999999998888999999999999999999999999999999999999853

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-35  Score=260.75  Aligned_cols=226  Identities=26%  Similarity=0.401  Sum_probs=184.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC--C--CHHHHHHHHHhccc---eEEeecHHHHHHHHhc--
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRV---THIWVVPPLILALAKH--   78 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~l~~~~~---t~~~~~p~~~~~l~~~--   78 (235)
                      +...++|++++++|++|.+|+. .++.+++.|+++++.++  +  ++..+++.+.++++   +.+.+.|+++..+...  
T Consensus       216 ~~~~~~d~~l~~~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~  294 (631)
T PRK07769        216 LEGQEGDRGVSWLPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG  294 (631)
T ss_pred             cCCCCcceEEEeCCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc
Confidence            3445679999999999999995 45566677888887653  4  89999999998876   7889999987766643  


Q ss_pred             -CC--cCCCCCCCceEEEecccCCcHHHHHHHHHhCC-----CCceeccccccccccccccccCCCCC------------
Q 026632           79 -GL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAGS------------  138 (235)
Q Consensus        79 -~~--~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~i~~~yG~tE~g~~~~~~~~~~~~------------  138 (235)
                       ..  ....+++++|.+++||+++++++.+++.+.|+     +..+++.||+||++.++.........            
T Consensus       295 ~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (631)
T PRK07769        295 LPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNA  374 (631)
T ss_pred             cchhcccCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhC
Confidence             11  11346789999999999999999999999873     24699999999998655543211100            


Q ss_pred             -------------CCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCccccccccc----------
Q 026632          139 -------------RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID----------  195 (235)
Q Consensus       139 -------------~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~----------  195 (235)
                                   ....++|+|.++..++++|++++++++.|+.|||+++||+++.||+++++.+++.|.          
T Consensus       375 ~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~  454 (631)
T PRK07769        375 GRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSES  454 (631)
T ss_pred             CCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccc
Confidence                         012368999999999999987899999999999999999999999999999888773          


Q ss_pred             -------CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          196 -------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       196 -------~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                             .+|||+|||+|+++ +|++++.||+||+||++|++|+|.|
T Consensus       455 ~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~e  500 (631)
T PRK07769        455 HAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQD  500 (631)
T ss_pred             cccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHH
Confidence                   24899999999994 8999999999999999999999864

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-34  Score=252.33  Aligned_cols=223  Identities=29%  Similarity=0.450  Sum_probs=190.4

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...++|++++++|++|.+|+ ..++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+.. .....+++
T Consensus       218 ~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~  295 (540)
T PRK06164        218 GYDPGAVLLAALPFCGVFGF-STLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPS  295 (540)
T ss_pred             CCCCCCEEEEcCCchhHHHH-HHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcc
Confidence            34577999999999999999 57899999999999999999999999999999999999999999998873 23446788


Q ss_pred             ceEEEecc-cCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC-CCCCCcccccC-CCcEEEEEeCCCCccCC
Q 026632           89 LKLVGSGA-APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-SRNIGSAGALA-PGVEALIVSVDTQKPLP  165 (235)
Q Consensus        89 lr~i~~~G-~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~-~~~~~~~g~p~-~~~~~~~~d~~~~~~v~  165 (235)
                      +|.+..++ .+...++.+++.+.  ++++++.||+||++++......... .......|.|. +++.++++|++++++++
T Consensus       296 l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~  373 (540)
T PRK06164        296 ARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLP  373 (540)
T ss_pred             eeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCC
Confidence            99886665 55667777777765  5899999999999876654432211 11223456665 88999999988999999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++|+.++.||+++++.+...+..++||+|||+|+++++|.+++.||.||+|+++|++|+|++
T Consensus       374 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~e  443 (540)
T PRK06164        374 DGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAE  443 (540)
T ss_pred             CCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHH
Confidence            9999999999999999999999999998888899999999999999999999999999999999999864

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.8e-35  Score=252.66  Aligned_cols=221  Identities=26%  Similarity=0.374  Sum_probs=186.0

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCc
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l   89 (235)
                      ...++++++.+|++|.++++ .++.+++.|+++++. +.++..+++.++++++|++.++|+++..+.+........++++
T Consensus       211 ~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G~~~v~~-~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~l  288 (540)
T PRK05857        211 WVVGETTYSPLPATHIGGLW-WILTCLMHGGLCVTG-GENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSL  288 (540)
T ss_pred             cccCceeeecCCccccchHH-HHHHHhhcceeEEec-CCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccc
Confidence            34568999999999999994 677889999988764 4688999999999999999999999999988776666678999


Q ss_pred             eEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---CCCCCcccccCCCcEEEEEeCCCCccC--
Q 026632           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVDTQKPL--  164 (235)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---~~~~~~~g~p~~~~~~~~~d~~~~~~v--  164 (235)
                      |.++.+|++++....++ .+.++ +++++.||+||++......+....   ....+++|+|+++++++++|++...++  
T Consensus       289 r~~~~gG~~~~~~~~~~-~~~~g-~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~  366 (540)
T PRK05857        289 RLVGYGGSRAIAADVRF-IEATG-VRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAP  366 (540)
T ss_pred             eEEEEcCccCCchhHHH-HHHhC-CeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCcccc
Confidence            99999999999888764 45665 999999999999865433222111   123468999999999999996443333  


Q ss_pred             ---CCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 ---PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ---~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                         +.|+.|||++++|.++.||+++++.+.+.+ .+|||+|||++++|++|++++.||.||+||++|++|+|+|
T Consensus       367 ~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~e  439 (540)
T PRK05857        367 GAGPSASFGTLWIKSPANMLGYWNNPERTAEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDE  439 (540)
T ss_pred             ccCCCCCcceEEEeCcchhhhhhCCccchhhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHH
Confidence               457899999999999999999999998888 6899999999999999999999999999999999999864

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-34  Score=250.58  Aligned_cols=224  Identities=28%  Similarity=0.470  Sum_probs=193.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcC--C
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK--K   83 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~--~   83 (235)
                      +....+|++++++|++|..|+...++.++..|+++++++  .+++..+++.++++++|.+.++|+++..+.+.....  .
T Consensus       212 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  291 (534)
T PRK05852        212 YRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSG  291 (534)
T ss_pred             hCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccccc
Confidence            345667999999999999999888999999999999864  478999999999999999999999999998865432  3


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC------CCCCCCcccccCCCcEEEEEe
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA------GSRNIGSAGALAPGVEALIVS  157 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~------~~~~~~~~g~p~~~~~~~~~d  157 (235)
                      ..++++|.+..+|+++++++++.+.+.|+ .++++.||+||++.++.......      .....+..|. .++++++++|
T Consensus       292 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d  369 (534)
T PRK05852        292 RKPAALRFIRSCSAPLTAETAQALQTEFA-APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVG  369 (534)
T ss_pred             ccCCCeeEEEECCCCCCHHHHHHHHHHhC-CChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEEC
Confidence            35789999999999999999999999996 89999999999997666432210      0112233444 6999999999


Q ss_pred             CCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          158 VDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       158 ~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      + +++++++|+.|||+++++.++.||+++++.+.+.+ .+|||+|||++++|++|++++.||.+|+|+.+|.+|+|.+
T Consensus       370 ~-~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~  445 (534)
T PRK05852        370 S-DGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPER  445 (534)
T ss_pred             C-CCCCCCCCCceEEEEecCcccchhcCCcccchhhh-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHH
Confidence            5 78999999999999999999999999999998887 6899999999999999999999999999999999999864

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-34  Score=250.09  Aligned_cols=224  Identities=39%  Similarity=0.596  Sum_probs=198.8

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+...++|++++.+|++|.+++. ..+.++..|+++++.+.+++..+++.++++++|.++++|+++..+.+........+
T Consensus       202 ~~~~~~~d~~~~~~~~~~~~~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~  280 (521)
T PRK06187        202 WLKLSRDDVYLVIVPMFHVHAWG-LPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDF  280 (521)
T ss_pred             hhCCCCCCEEEEeCCchHHhhHH-HHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCc
Confidence            34456779999999999999995 44559999999999988899999999999999999999999999998887766788


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC----CCCCCcccccCCCcEEEEEeCCCCc
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG----SRNIGSAGALAPGVEALIVSVDTQK  162 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~----~~~~~~~g~p~~~~~~~~~d~~~~~  162 (235)
                      +++|.++.+|+++++++.+++.+.| ++++++.||+||+++++........    .......|+|++++.++++|+ +++
T Consensus       281 ~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-~~~  358 (521)
T PRK06187        281 SSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDD-DGD  358 (521)
T ss_pred             chhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECC-CCC
Confidence            9999999999999999999999998 4999999999999987665433211    125568899999999999996 678


Q ss_pred             cCCC--CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          163 PLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       163 ~v~~--g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      +++.  |+.|||+++++.++.+|+++++.+.+.+ .++||+|||+++++++|.+++.||.+|+|+.+|.+++|.
T Consensus       359 ~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~  431 (521)
T PRK06187        359 ELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPR  431 (521)
T ss_pred             CCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecccceEEcCCeEECHH
Confidence            8988  9999999999999999999999888887 677999999999999999999999999999999999985

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=5e-35  Score=260.75  Aligned_cols=222  Identities=27%  Similarity=0.361  Sum_probs=176.7

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCC--------HHHHHHHHHhccceEEeecHHHHHHHHhcCCc
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD--------LEMFLRAIEKHRVTHIWVVPPLILALAKHGLV   81 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~   81 (235)
                      ..++|++++++|++|.+++. .....+..|+++.......        +..+++.++++++|++.++|+++..+.+....
T Consensus       289 ~~~~d~~l~~lPl~Hi~~~~-~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~  367 (696)
T PLN02387        289 LGKNDVYLAYLPLAHILELA-AESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRK  367 (696)
T ss_pred             CCCCCEEEEECcHHHHHHHH-HHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHH
Confidence            45679999999999999984 4444566777776644321        23456789999999999999999887643210


Q ss_pred             C-------------------------------C----------------CCCCCceEEEecccCCcHHHHHHHHHhCCCC
Q 026632           82 K-------------------------------K----------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSA  114 (235)
Q Consensus        82 ~-------------------------------~----------------~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~  114 (235)
                      .                               .                ...+++|.+++||+++++++.+.++..++ +
T Consensus       368 ~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~g-~  446 (696)
T PLN02387        368 KVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLG-A  446 (696)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHcC-C
Confidence            0                               0                00158999999999999999988887786 9


Q ss_pred             ceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCC-CccC--CCCCceEEEEEcCcccccccCCccccc
Q 026632          115 TVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-QKPL--PPNQLGEIWLRGPNMMRGYYNNEQATK  191 (235)
Q Consensus       115 ~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~-~~~v--~~g~~Gel~v~~~~~~~~y~~~~~~~~  191 (235)
                      .+++.||+||+++.++.....  +...+++|.|+|+++++++|.++ +..+  .+++.|||+++||.++.||+++|+.|.
T Consensus       447 ~v~~~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~  524 (696)
T PLN02387        447 PIGQGYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTD  524 (696)
T ss_pred             CeeEeechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHHHHh
Confidence            999999999998766554332  34567899999999999999433 3333  344579999999999999999999999


Q ss_pred             cccc--CCC--eEecCceEEEcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          192 LTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       192 ~~~~--~~g--~~~TgDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      +.|.  .+|  ||+|||+|++|++|+++|.||+||+||+ +|++|+|+|
T Consensus       525 ~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~e  573 (696)
T PLN02387        525 EVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGK  573 (696)
T ss_pred             hhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHH
Confidence            9883  345  9999999999999999999999999998 699999964

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.6e-35  Score=261.34  Aligned_cols=217  Identities=28%  Similarity=0.428  Sum_probs=176.7

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHH-------HHHhccceEEeecHHHHHHHHhcCCc--
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLR-------AIEKHRVTHIWVVPPLILALAKHGLV--   81 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~l~~~~~t~~~~~p~~~~~l~~~~~~--   81 (235)
                      .++|++++++|++|.++.. .....+..|+++++.   ++..+.+       .++++++|++.++|++++.+.+....  
T Consensus       308 ~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~  383 (700)
T PTZ00216        308 EEDETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKL  383 (700)
T ss_pred             CCCCEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHH
Confidence            4679999999999999984 455667788877763   4555554       68899999999999998877542110  


Q ss_pred             -----------------------CC----------------CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccc
Q 026632           82 -----------------------KK----------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGL  122 (235)
Q Consensus        82 -----------------------~~----------------~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  122 (235)
                                             .+                ...+++|.+++||+++++++.++++..++  ++++.||+
T Consensus       384 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~--~l~~~YG~  461 (700)
T PTZ00216        384 PPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG--MVIQGWGL  461 (700)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh--hHhhccCc
Confidence                                   00                00157999999999999999988877664  89999999


Q ss_pred             cccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCC-ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEe
Q 026632          123 TETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVH  201 (235)
Q Consensus       123 tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~-~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~  201 (235)
                      ||+++++......  +...+++|+|+++++++++|.++. ...++++.|||+|+||.++.||+++|+.+++.|+.+|||+
T Consensus       462 TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~  539 (700)
T PTZ00216        462 TETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFH  539 (700)
T ss_pred             ccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCee
Confidence            9998766544332  345678999999999999996432 2345667899999999999999999999999998899999


Q ss_pred             cCceEEEcCCCcEEEEeccCCceE-eccEEeecCC
Q 026632          202 TGDLGYFDGDGQLYVVDRIKELIK-YKGFQVTSNW  235 (235)
Q Consensus       202 TgDl~~~~~~g~~~~~GR~~d~i~-~~G~~v~p~~  235 (235)
                      |||+|+++++|.+++.||+||+|| .+|++|+|+|
T Consensus       540 TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~e  574 (700)
T PTZ00216        540 TGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEA  574 (700)
T ss_pred             ccceEEEcCCCcEEEEEehHhheecCCCceeccHH
Confidence            999999999999999999999998 7999999864

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-34  Score=248.49  Aligned_cols=219  Identities=22%  Similarity=0.311  Sum_probs=189.6

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDL   86 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~l   86 (235)
                      ...++|+++..+|++|.+|+ ..++.++..|+++++.+.++++.+++.++++++|.+.++|+++..+.+..+.  ....+
T Consensus       213 ~~~~~d~~~~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  291 (516)
T PRK13383        213 RLRTGSRISVAMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPL  291 (516)
T ss_pred             ccCCCCeEEEecCCcchhhH-HHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCC
Confidence            34567999999999999999 5678889999999998889999999999999999999999999998875432  12357


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.+++||+++++++.+++.+.|+ ..+++.||+||++..+...... .......+|+|+++++++++|+ ++++++.
T Consensus       292 ~~lr~i~~gG~~l~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~  368 (516)
T PRK13383        292 PQLRVVMSSGDRLDPTLGQRFMDTYG-DILYNGYGSTEVGIGALATPAD-LRDAPETVGKPVAGCPVRILDR-NNRPVGP  368 (516)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcC-chhhhcccccccccceeccccc-cccCCCcccCCCCCcEEEEECC-CCCCCCC
Confidence            89999999999999999999999997 8899999999998765443321 1344568999999999999995 7899999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+++++.++.+|++++..   .+ .+|||+|||+++++++|++++.||.||+|+++|++|+|++
T Consensus       369 g~~Gel~v~g~~~~~~Y~~~~~~---~~-~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~e  433 (516)
T PRK13383        369 RVTGRIFVGGELAGTRYTDGGGK---AV-VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRA  433 (516)
T ss_pred             CCceEEEEecCcccccccCCchh---he-ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHH
Confidence            99999999999999999987542   22 5799999999999999999999999999999999999863

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=2.5e-34  Score=248.39  Aligned_cols=223  Identities=22%  Similarity=0.323  Sum_probs=196.4

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +....+|+++..+|++|..++...++.++..|+++++.++ +++..+++.|+++++|++.++|+++..+++.........
T Consensus       198 ~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~  277 (508)
T TIGR02262       198 LGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQ  277 (508)
T ss_pred             cCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcccccccc
Confidence            3455669999999999999997788889999999988764 689999999999999999999999888877654444456


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      .++|.++.+|+++++++.+.|.+.|+ +++++.||+||++.++......  +...+.+|+|++++.++++| ++++++++
T Consensus       278 ~~l~~~~~~G~~l~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d-~~~~~~~~  353 (508)
T TIGR02262       278 VRLRLCTSAGEALPAEVGQRWQARFG-VDIVDGIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVG-DGGQDVAA  353 (508)
T ss_pred             ccceeEEEcCCCCCHHHHHHHHHHhC-CchhhCccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEEC-CCCCCCCC
Confidence            78999999999999999999999996 8999999999999766543222  33456789999999999999 68999999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+++++.++.+|+++++.+...+ .++||+|||+++++++|.+++.||.||+|+.+|++|+|.+
T Consensus       354 g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~  421 (508)
T TIGR02262       354 GEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFE  421 (508)
T ss_pred             CCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCCEEECHHH
Confidence            9999999999999999999999988877 6899999999999999999999999999999999999863

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.1e-34  Score=250.40  Aligned_cols=220  Identities=31%  Similarity=0.501  Sum_probs=194.4

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceE
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (235)
                      .+.+++.+|++|.+++....+.++..|++.++.+ ..++..+++.++++++|.+.++|+++..+.+........++++|.
T Consensus       252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~  331 (557)
T PRK07059        252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV  331 (557)
T ss_pred             CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence            3578889999999998777788888888877665 458999999999999999999999999998877666667889999


Q ss_pred             EEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceE
Q 026632           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (235)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Ge  171 (235)
                      ++.||+++++.+.+.+.+.++ +++++.||+||++.++...... .......+|.|++++.++++|+ ++++++.|+.||
T Consensus       332 ~~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~-~~~~~~~g~~Ge  408 (557)
T PRK07059        332 ANGGGMAVQRPVAERWLEMTG-CPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVSIRDD-DGNDLPLGEPGE  408 (557)
T ss_pred             EEeccccCCHHHHHHHHHHhC-CCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEEEECC-CCCCCCCCCceE
Confidence            999999999999999999886 9999999999999876644322 2334568999999999999995 789999999999


Q ss_pred             EEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       172 l~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+++++.++.||+++++.+...+..+|||+|||+++++++|.+++.||++|+|+++|++|+|++
T Consensus       409 l~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~  472 (557)
T PRK07059        409 ICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNE  472 (557)
T ss_pred             EEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHH
Confidence            9999999999999999999888878999999999999999999999999999999999999863

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-34  Score=248.09  Aligned_cols=223  Identities=24%  Similarity=0.359  Sum_probs=190.4

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFD   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~   85 (235)
                      +....+|+++.++|++|.+++... ...+..|+++++.+.+++..+++.++++++|++.++|+++..+.+....  ....
T Consensus       190 ~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  268 (501)
T PRK13390        190 YDISESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYD  268 (501)
T ss_pred             hCCCCCCeEEecccchhhhHHHHH-HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCC
Confidence            445667999999999999988433 4456789999999889999999999999999999999999988875432  2345


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      ++++|.++.+|+++++++.+.+.+.++ ..+++.||+||+++++...... .....+.+|+|.++ .++++| +++++++
T Consensus       269 ~~~l~~v~~~g~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g-~~~i~d-~~~~~~~  344 (501)
T PRK13390        269 VSSLRAVIHAAAPCPVDVKHAMIDWLG-PIVYEYYSSTEAHGMTFIDSPD-WLAHPGSVGRSVLG-DLHICD-DDGNELP  344 (501)
T ss_pred             hhhhheEEEcCCCCCHHHHHHHHHhcC-CceeeeecccccCceEEecchh-hccCCCCcCCcccc-eEEEEC-CCCCCCC
Confidence            779999999999999999999999886 8899999999998765433211 12345678999999 789998 4889999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccC--CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~--~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +|+.|||+++++.++.+|+++++.+.+.+..  ++|++|||+++++++|++++.||.||+|+++|++|+|++
T Consensus       345 ~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~e  416 (501)
T PRK13390        345 AGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQE  416 (501)
T ss_pred             CCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHH
Confidence            9999999999999999999999998887643  679999999999999999999999999999999999864

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=3.8e-34  Score=249.02  Aligned_cols=220  Identities=38%  Similarity=0.622  Sum_probs=194.1

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceEE
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV   92 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~i   92 (235)
                      .+++++..|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........++++|.+
T Consensus       238 ~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i  317 (541)
T TIGR03205       238 VERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATI  317 (541)
T ss_pred             CceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceE
Confidence            47999999999999998888999999999999888899999999999999999999999999987654444567899999


Q ss_pred             EecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEe-CCCCccCCCCCceE
Q 026632           93 GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVS-VDTQKPLPPNQLGE  171 (235)
Q Consensus        93 ~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d-~~~~~~v~~g~~Ge  171 (235)
                      +.||+++++++.+++.+.++ .++++.||+||++.++....... ....+.+|.|++++.+++.+ .+.+++++.|+.||
T Consensus       318 ~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Ge  395 (541)
T TIGR03205       318 GSGGAPLPVEVANFFERKTG-LKLKSGWGMTETCSPGTGHPPEG-PDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGE  395 (541)
T ss_pred             EEccccCCHHHHHHHHHHhC-CCeecccccccCCcccccCCCCC-CCCCCCcceeccCceeEEEecCCCCccCCCCCeeE
Confidence            99999999999999998886 89999999999998766543221 23456789999999988765 35678999999999


Q ss_pred             EEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       172 l~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+++++.++.||+++++.+.+.+ .++||+|||+++++++|++++.||.||+|+.+|++|+|++
T Consensus       396 l~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~e  458 (541)
T TIGR03205       396 LRIRGPNVTRGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQM  458 (541)
T ss_pred             EEEecCCccccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHH
Confidence            99999999999999999988887 6889999999999999999999999999999999999864

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.2e-34  Score=256.85  Aligned_cols=218  Identities=25%  Similarity=0.444  Sum_probs=183.5

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++.+|++|.+|+...++.++..|+++++.+. ++...+++.+.++++|.++++|+++..+.+..  ...++
T Consensus       401 ~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~  478 (718)
T PRK08043        401 ADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDF  478 (718)
T ss_pred             hCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--Ccccc
Confidence            3456779999999999999997788999999999998874 57788899999999999999999988876642  23457


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.||+++++++.+.+++.|+ +++++.||+||+++++......  ....+++|+|+|+++++++|. ++    .
T Consensus       479 ~~lr~i~~gg~~l~~~~~~~~~~~~g-~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d~-~~----~  550 (718)
T PRK08043        479 ARLRYVVAGAEKLQESTKQLWQDKFG-LRILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSV-PG----I  550 (718)
T ss_pred             cceEEEEEeCccCCHHHHHHHHHHcC-CCeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEecC-CC----C
Confidence            89999999999999999999999886 8999999999998766543322  335678999999999999985 33    2


Q ss_pred             CCceEEEEEcCcccccccCC--ccc-------ccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNN--EQA-------TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~--~~~-------~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|||+++|++++.||+++  ++.       +.+.+..+|||+|||+|++|++|++++.||+||+|+++|++|+|.|
T Consensus       551 ~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~e  628 (718)
T PRK08043        551 EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEM  628 (718)
T ss_pred             CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHH
Confidence            56699999999999999983  432       2222235799999999999999999999999999999999999864

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=5.1e-34  Score=248.24  Aligned_cols=219  Identities=27%  Similarity=0.404  Sum_probs=193.8

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...+++++++++|++|..++ ..++.++..|+++++.+++++..+++.|+++++|++.++|+++..+.+.........+
T Consensus       216 ~~~~~~~~~l~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  294 (542)
T PRK06155        216 LEIGADDVLYTTLPLFHTNAL-NAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAH  294 (542)
T ss_pred             cCCCCCCEEEEecCHHHHHHH-HHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccC
Confidence            345677999999999999999 5679999999999999999999999999999999999999999999887766666677


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.++.+|  +++++.+.+.+.++ +++++.||+||++.++.....   ....+.+|.|.++++++++|+ ++++++.|
T Consensus       295 ~l~~~~~g~--~~~~~~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d~-~~~~~~~g  367 (542)
T PRK06155        295 RVRVALGPG--VPAALHAAFRERFG-VDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVDE-HDQELPDG  367 (542)
T ss_pred             ceEEEEEcC--CCHHHHHHHHHHcC-CCEEeeecccccCccccCCCC---CCCCCCcCccCCCceEEEECC-CCCCCCCC
Confidence            899887665  57899999999886 899999999999987664321   345577899999999999995 68999999


Q ss_pred             CceEEEEEcC---cccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGP---NMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~---~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||+++++   .++.||+++++.+...+ .++||+|||+++++++|++++.||.+|+|+.+|++|+|++
T Consensus       368 ~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~e  437 (542)
T PRK06155        368 EPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFE  437 (542)
T ss_pred             CceEEEEecCCccccchhhcCCHHHHHHhh-cCCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHH
Confidence            9999999998   68999999999888887 7899999999999999999999999999999999999864

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=4.2e-34  Score=247.12  Aligned_cols=223  Identities=26%  Similarity=0.366  Sum_probs=194.1

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...++|++++.+|++|.+|+ ..++.++..|+++++.++++++.+++.++++++|++.++|+++..+.+.... ...+++
T Consensus       198 ~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~  275 (515)
T TIGR03098       198 ENRPDDRLLAVLPLSFDYGF-NQLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP-ESAAPS  275 (515)
T ss_pred             CCCcccEEEEECchhhHhHH-HHHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-CCCccc
Confidence            44567999999999999998 5789999999999999989999999999999999999999999998875332 235789


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++++|+++++++.+.+++.+++..+++.||+||++......+. ......+.+|+|+++++++++++ ++++++.|+
T Consensus       276 l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~~~i~~~-~~~~~~~~~  353 (515)
T TIGR03098       276 LRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPE-EVDRRPDSIGKAIPNAEVLVLRE-DGSECAPGE  353 (515)
T ss_pred             eEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccc-cccCCCCCcceecCCCEEEEECC-CCCCCCCCC
Confidence            9999999999999999999999977899999999999865544322 12345678999999999999995 788999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccC-----------CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDK-----------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~-----------~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++++.++.+|+++++.+...+..           ++|++|||+++++++|++++.||.||+|+.+|++|+|++
T Consensus       354 ~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e  431 (515)
T TIGR03098       354 EGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTE  431 (515)
T ss_pred             ceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHH
Confidence            9999999999999999998877655422           348999999999999999999999999999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.1e-34  Score=248.59  Aligned_cols=225  Identities=31%  Similarity=0.472  Sum_probs=193.2

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...++|++++++|++|.+|+...++.++..|+++++.+++++..+++.++++++|.+.++|+.+..+.+........+++
T Consensus       247 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~  326 (567)
T PRK06178        247 VGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSS  326 (567)
T ss_pred             cCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcch
Confidence            34667999999999999999778899999999999999999999999999999999999999999888766555556778


Q ss_pred             ceEEEec--ccCCcHHHHHHHHHhCCCCcee-ccccccccccccccccCCC-C----CCCCCcccccCCCcEEEEEeCCC
Q 026632           89 LKLVGSG--AAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFA-G----SRNIGSAGALAPGVEALIVSVDT  160 (235)
Q Consensus        89 lr~i~~~--G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~g~~~~~~~~~~-~----~~~~~~~g~p~~~~~~~~~d~~~  160 (235)
                      +|.+..+  ++++++++.+.+++.++ ..++ +.||+||++.......... .    ......+|.|+++++++++|+++
T Consensus       327 l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~  405 (567)
T PRK06178        327 LRQVRVVSFVKKLNPDYRQRWRALTG-SVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFET  405 (567)
T ss_pred             heeeeeccccccCCHHHHHHHHHHhC-CcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCC
Confidence            8886544  58999999999999987 5555 5799999987654332111 0    12335689999999999999878


Q ss_pred             CccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          161 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       161 ~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +++++.|+.|||++++++++.||+++++.+.+.+ .+|||+|||+++++++|++++.||++|+|+.+|++|+|++
T Consensus       406 ~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~e  479 (567)
T PRK06178        406 GELLPLGAEGEIVVRTPSLLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSE  479 (567)
T ss_pred             CCcCCCCCceEEEEECCcccccccCChhhhhhcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHH
Confidence            9999999999999999999999999999888877 6899999999999999999999999999999999999864

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-34  Score=248.28  Aligned_cols=221  Identities=31%  Similarity=0.534  Sum_probs=190.6

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      ..+.|+++.++|++|.+++. .++ .+..|++.++.+  +++++.+++.++++++|.+.++|+++..+.+........++
T Consensus       203 ~~~~d~~l~~~p~~~~~~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  280 (528)
T PRK07470        203 TTEQDASLVVAPLSHGAGIH-QLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHS  280 (528)
T ss_pred             CCcccEEEEeccchhHHHHH-HHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCc
Confidence            34569999999999999984 444 566777776654  57899999999999999999999999999988766666788


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCC------CCCCCCCcccccCCCcEEEEEeCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF------AGSRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~------~~~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      ++|.++.+|++++++..+++.+.++ ..+++.||+||+++.+...+..      ......+.+|.|.+++.++++|+ ++
T Consensus       281 ~lr~~~~gG~~l~~~~~~~~~~~~g-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~-~~  358 (528)
T PRK07470        281 SLRYVIYAGAPMYRADQKRALAKLG-KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDD-EG  358 (528)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHhC-cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECC-CC
Confidence            9999999999999999999999886 8899999999998765543211      01234567899999999999995 78


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++.|+.|||+++++.++.||+++++.+...+ .++||+|||+++++++|++++.||.||+|+.+|++|+|.+
T Consensus       359 ~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~  431 (528)
T PRK07470        359 RELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPRE  431 (528)
T ss_pred             CCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHH
Confidence            999999999999999999999999999888877 7899999999999999999999999999999999999863

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=1.9e-34  Score=274.05  Aligned_cols=225  Identities=17%  Similarity=0.161  Sum_probs=192.1

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|++++++|++|..++ ..++.+|+.|+++++.+.   .++..+++.++++++|++.++|+++..+....   .
T Consensus       450 ~~~~~~~d~~~~~~~~~~d~~~-~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~  525 (1389)
T TIGR03443       450 RFGLSENDKFTMLSGIAHDPIQ-RDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---T  525 (1389)
T ss_pred             hcCCCCCCEEEEecCceecchH-HHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---c
Confidence            3445677999999999999888 688999999999999864   36889999999999999999999999887543   2


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---------CCCCCcccccCCCcEEE
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEAL  154 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~  154 (235)
                      ..++++|.++.||++++++..+.+.+.+++++++|.||+||++.++........         .......|+|++++++.
T Consensus       526 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~  605 (1389)
T TIGR03443       526 TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLL  605 (1389)
T ss_pred             ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEE
Confidence            357899999999999999999999988878999999999999876554321110         01234689999999999


Q ss_pred             EEeCC-CCccCCCCCceEEEEEcCcccccccCCccccccccc----------------------------CCCeEecCce
Q 026632          155 IVSVD-TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID----------------------------KKGWVHTGDL  205 (235)
Q Consensus       155 ~~d~~-~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~----------------------------~~g~~~TgDl  205 (235)
                      ++|++ .+++++.|+.|||+|+||.++.||+++|+.+.+.|.                            .++||+|||+
T Consensus       606 ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDl  685 (1389)
T TIGR03443       606 VVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDL  685 (1389)
T ss_pred             EECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCc
Confidence            99964 358899999999999999999999999999887762                            2579999999


Q ss_pred             EEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          206 GYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       206 ~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+++++|.+++.||+||+||++|++|+|.|
T Consensus       686 g~~~~dG~l~~~GR~dd~Iki~G~rI~p~e  715 (1389)
T TIGR03443       686 GRYLPDGNVECCGRADDQVKIRGFRIELGE  715 (1389)
T ss_pred             eeEcCCCCEEEecccCCEEEeCcEEecHHH
Confidence            999999999999999999999999999864

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.6e-34  Score=254.79  Aligned_cols=221  Identities=33%  Similarity=0.426  Sum_probs=180.9

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--------
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--------   81 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--------   81 (235)
                      ..++|++++++|++|.++... .+.++..|+++++.+. ++..+++.+++.++|++.++|.+++.+.+....        
T Consensus       263 ~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~  340 (660)
T PLN02430        263 MTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPR  340 (660)
T ss_pred             CCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHH
Confidence            346799999999999999854 5667889999988754 788999999999999999999998877642100        


Q ss_pred             -----------------------CCC--------------CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccc
Q 026632           82 -----------------------KKF--------------DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTE  124 (235)
Q Consensus        82 -----------------------~~~--------------~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  124 (235)
                                             ...              ..+++|.+++||+++++++.+.++ .+++..+++.||+||
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE  419 (660)
T PLN02430        341 RRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTE  419 (660)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhh
Confidence                                   000              015899999999999999876655 455478999999999


Q ss_pred             cccccccccCCCCCCCCCcccccCCCcEEEEEeC-CCC-ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEec
Q 026632          125 TSGIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHT  202 (235)
Q Consensus       125 ~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~-~~~-~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~T  202 (235)
                      ++++.+...... ....+++|.|.+++++++.|. +.+ .+++.+..|||+++||.++.||+++|+.+++.+ .+|||+|
T Consensus       420 ~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~-~dGw~~T  497 (660)
T PLN02430        420 TLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHT  497 (660)
T ss_pred             hhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhh-hccceec
Confidence            987665443221 234678999999999999873 333 556667789999999999999999999999988 7999999


Q ss_pred             CceEEEcCCCcEEEEeccCCceEe-ccEEeecCC
Q 026632          203 GDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSNW  235 (235)
Q Consensus       203 gDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~~  235 (235)
                      ||+|+++++|++++.||+||+|++ +|++|+|++
T Consensus       498 GDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~  531 (660)
T PLN02430        498 GDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEY  531 (660)
T ss_pred             cceEEECCCCcEEEEEcccccEEcCCCcEEchHH
Confidence            999999999999999999999997 699999964

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=7.8e-34  Score=245.34  Aligned_cols=224  Identities=27%  Similarity=0.418  Sum_probs=192.7

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKF   84 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~   84 (235)
                      .+...+++++++..|++|..+. ...+.++..|+++++.+.++++.+++.++++++|++.++|+++..+++....  ...
T Consensus       190 ~~~~~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  268 (509)
T PRK12406        190 IYGLKPGIRALLTGPLYHSAPN-AYGLRAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY  268 (509)
T ss_pred             hcCCCCCceEEEEeCCcccchH-HHHHHHHhhheEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccC
Confidence            3445667999999999999887 4455678889999998888999999999999999999999999998875432  234


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v  164 (235)
                      +++++|.++.||+++++++.+++.+.++ +.+++.||+||++.++...... .....+.+|.|++++.++++|+ +++++
T Consensus       269 ~~~~l~~v~~gg~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~-~~~~~  345 (509)
T PRK12406        269 DVSSLRHVIHAAAPCPADVKRAMIEWWG-PVIYEYYGSTESGAVTFATSED-ALSHPGTVGKAAPGAELRFVDE-DGRPL  345 (509)
T ss_pred             CCCceeEEEEcCCCCCHHHHHHHHHHcC-CcEEeeccccccCceEecCccc-ccccCCCcCccCCCcEEEEECC-CCCCC
Confidence            5789999999999999999999999886 8899999999999866543221 2334567899999999999995 78999


Q ss_pred             CCCCceEEEEEcCcccc-cccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQLGEIWLRGPNMMR-GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~Gel~v~~~~~~~-~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|+.|||+++++.++. +|+++++.+...+ .++||+|||+++++++|++++.||.||+|+++|++|+|.+
T Consensus       346 ~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~  416 (509)
T PRK12406        346 PQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAE  416 (509)
T ss_pred             CCCCceEEEEECCccccccccCCchhccccc-CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHH
Confidence            99999999999998765 8999888877665 7899999999999999999999999999999999999863

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.4e-34  Score=250.92  Aligned_cols=220  Identities=28%  Similarity=0.377  Sum_probs=175.9

Q ss_pred             cCC-CCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC--C--CHHHHHHHHHhccceEEeecHHHHHHHHhcCC-cC
Q 026632            9 AGE-LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--F--DLEMFLRAIEKHRVTHIWVVPPLILALAKHGL-VK   82 (235)
Q Consensus         9 ~~~-~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~--~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~-~~   82 (235)
                      ... ++|++++++|++|.+|+ ..++.+++.|+++++.+.  +  ++..+++.++++++|.+...|.++..+.+... ..
T Consensus       189 ~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~  267 (525)
T PRK05851        189 GLDAATDVGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVS  267 (525)
T ss_pred             CCCCCCCeEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcccc
Confidence            344 67999999999999999 577899999999999763  4  67889999999999977554444444433221 22


Q ss_pred             CCCCCCceEEEecccCCcHHHHHHHHHh---CC--CCceeccccccccccccccccCCC-------------CCCCCCcc
Q 026632           83 KFDLSSLKLVGSGAAPLGKELMEECAKN---VP--SATVIQGYGLTETSGIATMENSFA-------------GSRNIGSA  144 (235)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~---~~--~~~i~~~yG~tE~g~~~~~~~~~~-------------~~~~~~~~  144 (235)
                      ...++++|.+++||+++++++.++|.+.   ++  +..+++.||+||++.++.......             .......+
T Consensus       268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  347 (525)
T PRK05851        268 DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVL  347 (525)
T ss_pred             CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeee
Confidence            3457899999999999999999999874   33  245999999999986554321110             01223568


Q ss_pred             cccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCce
Q 026632          145 GALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI  224 (235)
Q Consensus       145 g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i  224 (235)
                      |+|+++++++++|++.+.+++.|+.|||+++|++++.||+++++.+     .++||+|||+++++ +|.+++.||+||+|
T Consensus       348 G~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i  421 (525)
T PRK05851        348 GNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELI  421 (525)
T ss_pred             cCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEE
Confidence            9999999999999766677999999999999999999999987632     57899999999996 79999999999999


Q ss_pred             EeccEEeecCC
Q 026632          225 KYKGFQVTSNW  235 (235)
Q Consensus       225 ~~~G~~v~p~~  235 (235)
                      |++|++|+|.|
T Consensus       422 ~~~G~~v~p~e  432 (525)
T PRK05851        422 TVAGRNIFPTE  432 (525)
T ss_pred             EECCEEeCHHH
Confidence            99999999864

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.2e-33  Score=244.59  Aligned_cols=222  Identities=27%  Similarity=0.389  Sum_probs=193.7

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCc
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l   89 (235)
                      ..++|++++++|++|..+....++.++..|+++++.+++++..+++.++++++|++.++|++++.+.............+
T Consensus       211 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l  290 (517)
T PRK08008        211 LRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCL  290 (517)
T ss_pred             CCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccc
Confidence            35669999999999998887888999999999999999999999999999999999999999998887654444445678


Q ss_pred             eEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCc
Q 026632           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL  169 (235)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~  169 (235)
                      |.+..+ .+++++..+.+.+.++ +++++.||+||++..+...... ......++|.|+++++++++|+ ++++++.|+.
T Consensus       291 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~g~~~~i~d~-~~~~~~~g~~  366 (517)
T PRK08008        291 REVMFY-LNLSDQEKDAFEERFG-VRLLTSYGMTETIVGIIGDRPG-DKRRWPSIGRPGFCYEAEIRDD-HNRPLPAGEI  366 (517)
T ss_pred             eeeEEe-cCCCHHHHHHHHHHhC-CeEEeeccccccccccccCCcc-ccccCCccccCCCCcEEEEECC-CCCCCCCCCc
Confidence            887765 4799999999999886 9999999999998655443322 1334567999999999999994 7899999999


Q ss_pred             eEEEEEc---CcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          170 GEIWLRG---PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       170 Gel~v~~---~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |||++++   +.++.||+++++.+.+.+..+|||+|||+++++++|++++.||.||+|+.+|++|+|.+
T Consensus       367 Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~  435 (517)
T PRK08008        367 GEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVE  435 (517)
T ss_pred             ceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHH
Confidence            9999997   68999999999999999988999999999999999999999999999999999999864

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=5.4e-34  Score=251.41  Aligned_cols=212  Identities=26%  Similarity=0.297  Sum_probs=178.3

Q ss_pred             CCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCH---HHHHHHHHhccceEEeecHHHHHHHHhcCCc----CC
Q 026632           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLV----KK   83 (235)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~----~~   83 (235)
                      +++++++++|++|.+|+...++.+++.|+++++.++ +++   ..+++.++++++|+++++|+++..|++....    ..
T Consensus       251 ~~~~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~  330 (614)
T PRK08180        251 EPPVLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRR  330 (614)
T ss_pred             CCcEEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhh
Confidence            458999999999999987888899999999999763 443   5678889999999999999999988764322    22


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHh----CC-CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeC
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKN----VP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~----~~-~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      ..++++|.+++||+++++++.+.+.+.    ++ ++.+++.||+||+++++......  ....+++|+|+++++++++|+
T Consensus       331 ~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~  408 (614)
T PRK08180        331 RFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVPV  408 (614)
T ss_pred             hhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEecC
Confidence            356899999999999999999999875    33 36799999999998766543322  345678999999999999874


Q ss_pred             CCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEE----cCCCcEEEEeccCCceEe-ccEEeec
Q 026632          159 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF----DGDGQLYVVDRIKELIKY-KGFQVTS  233 (235)
Q Consensus       159 ~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~----~~~g~~~~~GR~~d~i~~-~G~~v~p  233 (235)
                              |..|||+++||+++.||+++|+.+.+.|+.+|||+|||+|++    |++|++++.||+||+|++ +|++|++
T Consensus       409 --------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~  480 (614)
T PRK08180        409 --------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSV  480 (614)
T ss_pred             --------CCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecc
Confidence                    446999999999999999999999998877999999999999    467899999999998885 7998874

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.9e-34  Score=289.87  Aligned_cols=225  Identities=20%  Similarity=0.297  Sum_probs=197.2

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC--CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      .+...++|++++++|++|..+. ..++.+|..|+++++.+.  +++..+++.++++++|++.++|+++..+.+...  ..
T Consensus      3272 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~ 3348 (3956)
T PRK12467       3272 AYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--GA 3348 (3956)
T ss_pred             hcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc--cc
Confidence            4556678999999999999887 788999999999999875  689999999999999999999999999987532  33


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---CCCCCcccccCCCcEEEEEeCCCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---SRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      .++++|.++.|||++++++.+.+.+.+++.+++|.||+||++..++.......   .....++|+|++++++.++| +.+
T Consensus      3349 ~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~ 3427 (3956)
T PRK12467       3349 DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQL 3427 (3956)
T ss_pred             CCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEEC-CCC
Confidence            57889999999999999999999998887899999999999876654322111   12235789999999999999 479


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCcccccccccCC-------CeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK-------GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~-------g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      ++++.|+.|||+|+|+.+++||+++|+.|++.|..+       +||+|||+|+++++|.+++.||+||+||++|++|.|.
T Consensus      3428 ~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~ 3507 (3956)
T PRK12467       3428 NPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELG 3507 (3956)
T ss_pred             CCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHH
Confidence            999999999999999999999999999999988544       3699999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus      3508 E 3508 (3956)
T PRK12467       3508 E 3508 (3956)
T ss_pred             H
Confidence            4

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.6e-33  Score=242.88  Aligned_cols=225  Identities=20%  Similarity=0.244  Sum_probs=191.7

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      +....+|+++++.|++|..++ ..++.++..|+++++.++   .++..+++.+++++++.+.++|+++..+.........
T Consensus       177 ~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~  255 (502)
T TIGR01734       177 FPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQE  255 (502)
T ss_pred             CCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccc
Confidence            345667999999999999988 678899999999999875   4789999999999999999999998877765544555


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCC---CCCCCCCcccccCCCcEEEEEeCCCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~---~~~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      .++++|.++.+|+++++++.+.+.+.+++.++++.||+||++.+.......   ........+|.|.++++++++++ ++
T Consensus       256 ~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~-~~  334 (502)
T TIGR01734       256 NYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDE-EG  334 (502)
T ss_pred             cCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECC-CC
Confidence            678999999999999999999999999879999999999998644432211   11223346899999999999995 68


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCcccccccc---cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~---~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++.|+.|||+++++.++.||+++++.+.+.+   ...+||+|||+|+++++ ++++.||.+|+|+++|++|+|++
T Consensus       335 ~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~  410 (502)
T TIGR01734       335 EPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELED  410 (502)
T ss_pred             CCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHH
Confidence            999999999999999999999999998887765   23469999999999876 99999999999999999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=6.2e-34  Score=291.25  Aligned_cols=225  Identities=20%  Similarity=0.267  Sum_probs=196.2

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc---CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|++++.+|++|..++ ..++.+|..|+++++.+   .+++..+++.++++++|++.++|++++.|.+...  .
T Consensus       690 ~~~~~~~d~~l~~~p~~fd~~~-~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~  766 (5163)
T PRK12316        690 AYGLGVGDTVLQKTPFSFDVSV-WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--V  766 (5163)
T ss_pred             hcCCCCCCEEEeeCCeehHHHH-HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--c
Confidence            3445677999999999999998 68899999999999985   3689999999999999999999999999987543  2


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                      ..++++|.+++|||++++++.+.+.+.+++.+++|.||+||++..+..............+|+|+++++++++|+ ++++
T Consensus       767 ~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~  845 (5163)
T PRK12316        767 ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDA-NLEP  845 (5163)
T ss_pred             ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECC-CCCC
Confidence            357899999999999999999999888888999999999999865443222222334457899999999999995 7899


Q ss_pred             CCCCCceEEEEEcCcccccccCCccccccccc------CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~------~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|+.|||+|+|+.++.||+++|+.+++.|.      .++||+|||+|+++++|.+++.||+||+||++|++|+|.|
T Consensus       846 ~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~E  923 (5163)
T PRK12316        846 VPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGE  923 (5163)
T ss_pred             CCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHH
Confidence            99999999999999999999999999988773      2459999999999999999999999999999999999865

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-33  Score=241.84  Aligned_cols=220  Identities=29%  Similarity=0.422  Sum_probs=190.1

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCCCCC
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLS   87 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~l~   87 (235)
                      ..+++++++.+|++|.+++ ...+.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+....  ...+++
T Consensus       197 ~~~~~~~l~~~p~~h~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~  275 (511)
T PRK13391        197 FRSDMVYLSPAPLYHSAPQ-RAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLS  275 (511)
T ss_pred             CCCCCeEEEcCCHHHHHHH-HHHHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCcc
Confidence            3566899999999999988 5667888999999999889999999999999999999999999888765432  233578


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.++.||+++++++.+.+++.++ ..+++.||+||++.+....... .....+.+|+|.++ .++++| +++++++.|
T Consensus       276 ~l~~~~~gg~~~~~~~~~~~~~~~g-~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g  351 (511)
T PRK13391        276 SLEVAIHAAAPCPPQVKEQMIDWWG-PIIHEYYAATEGLGFTACDSEE-WLAHPGTVGRAMFG-DLHILD-DDGAELPPG  351 (511)
T ss_pred             ceeEEEEccCCCCHHHHHHHHHHcC-CceeeeeccccccceEEecCcc-ccccCCCcCCcccc-eEEEEC-CCCCCCCCC
Confidence            9999999999999999999999886 8899999999999765543221 13345688999999 688888 478999999


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCC-CeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKK-GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~-g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||+++++ ++.+|+++++.+...+..+ +||+|||+++++++|++++.||.||+++.+|++|+|++
T Consensus       352 ~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~e  419 (511)
T PRK13391        352 EPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQE  419 (511)
T ss_pred             CceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHH
Confidence            9999999999 8889999999888877554 99999999999999999999999999999999999864

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=1.2e-33  Score=267.39  Aligned_cols=226  Identities=19%  Similarity=0.198  Sum_probs=194.5

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|++++..|++|..++ ..++.+|..|+++++.++   .++..+++.++++++|++.++|+++..+++......
T Consensus       633 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~  711 (1296)
T PRK10252        633 HYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG  711 (1296)
T ss_pred             hcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc
Confidence            4556677999999999999998 678899999999999763   589999999999999999999999998887643322


Q ss_pred             --CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC-----CCCCCcccccCCCcEEEEE
Q 026632           84 --FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG-----SRNIGSAGALAPGVEALIV  156 (235)
Q Consensus        84 --~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~-----~~~~~~~g~p~~~~~~~~~  156 (235)
                        ..++++|.++.||+++++++.+.+.+.++ ++++|.||+||++.++........     .......|+|+++..+.++
T Consensus       712 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~  790 (1296)
T PRK10252        712 ARQSCASLRQVFCSGEALPADLCREWQQLTG-APLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRIL  790 (1296)
T ss_pred             ccccCCCccEEEEecCCCCHHHHHHHHhcCC-CEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEE
Confidence              24678999999999999999999998875 899999999999876654332211     1223568999999999999


Q ss_pred             eCCCCccCCCCCceEEEEEcCcccccccCCcccccccccC------CCeEecCceEEEcCCCcEEEEeccCCceEeccEE
Q 026632          157 SVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQ  230 (235)
Q Consensus       157 d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~------~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~  230 (235)
                      | +.+++++.|+.|||+|+|+.++.||+++++.+.+.|..      ++||+|||+++++++|.+++.||+||+||++|++
T Consensus       791 d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~r  869 (1296)
T PRK10252        791 D-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQR  869 (1296)
T ss_pred             C-CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEE
Confidence            9 58999999999999999999999999999999888743      3499999999999999999999999999999999


Q ss_pred             eecCC
Q 026632          231 VTSNW  235 (235)
Q Consensus       231 v~p~~  235 (235)
                      |+|.|
T Consensus       870 i~~~e  874 (1296)
T PRK10252        870 IELGE  874 (1296)
T ss_pred             ecHHH
Confidence            99864

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-33  Score=242.13  Aligned_cols=220  Identities=29%  Similarity=0.438  Sum_probs=193.2

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--CCCCCCC
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--KKFDLSS   88 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~l~~   88 (235)
                      ..++++++..|++|.+++ ...+.++..|+++++.+.+++..+++.++++++|++.++|+++..+++....  ...++++
T Consensus       185 ~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  263 (502)
T PRK08276        185 GPDSVYLSPAPLYHTAPL-RFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSS  263 (502)
T ss_pred             CCCCEEEEcCcHHHHHHH-HHHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCccc
Confidence            356899999999999998 4556789999999999889999999999999999999999999999876543  2345789


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.++.+|++++.++.+++.+.++ ..+++.||+||++.++...... .....+.+|+|+ +..++++|+ ++++++.|+
T Consensus       264 lr~i~~~g~~~~~~~~~~~~~~~~-~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~i~d~-~~~~~~~g~  339 (502)
T PRK08276        264 LRVAIHAAAPCPVEVKRAMIDWWG-PIIHEYYASSEGGGVTVITSED-WLAHPGSVGKAV-LGEVRILDE-DGNELPPGE  339 (502)
T ss_pred             ceEEEecCCCCCHHHHHHHHHHhC-cHhhhhcccccccceeEecCcc-ccccCCCcceec-ccEEEEECC-CCCCCcCCC
Confidence            999999999999999999999886 7899999999999865543322 133446789999 889999995 789999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++++.++.+|+++++.+...+..++||+|||+++++++|.+++.||.||+++.+|++|+|++
T Consensus       340 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~  406 (502)
T PRK08276        340 IGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQE  406 (502)
T ss_pred             ceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHH
Confidence            9999999999999999999999988877799999999999999999999999999999999999863

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=3.3e-34  Score=252.71  Aligned_cols=224  Identities=26%  Similarity=0.415  Sum_probs=178.4

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CC--CHHHHHHHHH--hccceEEeecHHHHHHHHhcCC----
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KF--DLEMFLRAIE--KHRVTHIWVVPPLILALAKHGL----   80 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~--~~~~~~~~l~--~~~~t~~~~~p~~~~~l~~~~~----   80 (235)
                      ..+++++++++|++|..|+...++.++..|.++++.+ .+  ++..+++.++  +++++.+..+|+++..+.....    
T Consensus       232 ~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~  311 (612)
T PRK12476        232 LDRNTHGVSWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAE  311 (612)
T ss_pred             CCCCceEEEeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhh
Confidence            3566899999999999999655555555555555543 23  8899999994  5889999999998887766421    


Q ss_pred             cCCCCCCCceEEEecccCCcHHHHHHHHHhCC-----CCceeccccccccccccccccCCCC------------------
Q 026632           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG------------------  137 (235)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~i~~~yG~tE~g~~~~~~~~~~~------------------  137 (235)
                      .....++++| ++.||+++++++.+.+.+.|+     ..++++.||+||++..+........                  
T Consensus       312 ~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  390 (612)
T PRK12476        312 GDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVR  390 (612)
T ss_pred             hcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeee
Confidence            1234678999 999999999999999999873     2458999999999765433211100                  


Q ss_pred             -------CCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCccccccccc---------------
Q 026632          138 -------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID---------------  195 (235)
Q Consensus       138 -------~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~---------------  195 (235)
                             .....++|+|+++.+++++|++++++++.|+.|||+++|+.++.||+++++.+.+.|.               
T Consensus       391 ~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~  470 (612)
T PRK12476        391 VAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADG  470 (612)
T ss_pred             cCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhcccccccccccc
Confidence                   0012468999999999999976699999999999999999999999999999888773               


Q ss_pred             ---CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          196 ---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       196 ---~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                         .++||+|||+|++ ++|++++.||+||+||++|++|+|+|
T Consensus       471 ~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~e  512 (612)
T PRK12476        471 AADDGTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQD  512 (612)
T ss_pred             ccCCCCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHH
Confidence               1359999999998 59999999999999999999999864

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-33  Score=243.06  Aligned_cols=222  Identities=25%  Similarity=0.372  Sum_probs=187.6

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      .+...++|+++++.|++|.+++ ..++.++..|+++++.+ .+++..+++.++++++|.+.++|+++..+.+..+.....
T Consensus       213 ~~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~  291 (539)
T PRK07008        213 AMGLSARDAVLPVVPMFHVNAW-GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLR  291 (539)
T ss_pred             ccCCCCCceEEecCchHHhhhH-HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCC
Confidence            3444567999999999999888 55677888999999874 579999999999999999999999999999877666667


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC------C---CCCCCcccccCCCcEEEEE
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA------G---SRNIGSAGALAPGVEALIV  156 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~------~---~~~~~~~g~p~~~~~~~~~  156 (235)
                      ++++|.++.+|+++++++.+.+.+.++ +.+++.||+||++..+.......      .   ......+|+|+|++.++++
T Consensus       292 ~~~l~~~~~~G~~l~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~  370 (539)
T PRK07008        292 FSTLRRTVIGGSACPPAMIRTFEDEYG-VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIV  370 (539)
T ss_pred             cccceEEEEcCCCCCHHHHHHHHHHhC-CceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEE
Confidence            889999999999999999999999886 89999999999997654332110      0   0113568999999999999


Q ss_pred             eCCCCccCCCC--CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          157 SVDTQKPLPPN--QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       157 d~~~~~~v~~g--~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      |+ ++++++.+  +.|||+++++.++.+|++++..   .+ .+|||+|||+++++++|++++.||.||+|+++|++|+|.
T Consensus       371 d~-~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~---~~-~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~  445 (539)
T PRK07008        371 GD-DGRELPWDGKAFGDLQVRGPWVIDRYFRGDAS---PL-VDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSI  445 (539)
T ss_pred             CC-CCCccCCCCCcceEEEEeCCccchhhcCChhh---hh-cCCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHH
Confidence            95 77777743  5799999999999999998732   33 478999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      +
T Consensus       446 e  446 (539)
T PRK07008        446 D  446 (539)
T ss_pred             H
Confidence            3

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.2e-34  Score=250.38  Aligned_cols=212  Identities=25%  Similarity=0.287  Sum_probs=177.2

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCH---HHHHHHHHhccceEEeecHHHHHHHHhcCCcC----CC
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDL---EMFLRAIEKHRVTHIWVVPPLILALAKHGLVK----KF   84 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~---~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~----~~   84 (235)
                      .+++++++|++|.+|+...++.++..|+++++.++ +++   ..+++.++++++|++.++|+++..|.+.....    ..
T Consensus       264 ~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~  343 (624)
T PRK12582        264 PPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRS  343 (624)
T ss_pred             CceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHH
Confidence            58999999999999997778889999999999763 333   45677788999999999999998887643222    12


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhC----C-CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNV----P-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~----~-~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      .++++|.+++||+++++++.+++.+.+    + ++.+++.||+||++.++......  ....+++|+|++++++++++  
T Consensus       344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~~--  419 (624)
T PRK12582        344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLAP--  419 (624)
T ss_pred             HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC--CCCCCCCCcCCCCcEEEEcc--
Confidence            467999999999999999999998863    3 36799999999998766532222  34567899999999998864  


Q ss_pred             CCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEE-c---CCCcEEEEeccCCceEe-ccEEeecC
Q 026632          160 TQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF-D---GDGQLYVVDRIKELIKY-KGFQVTSN  234 (235)
Q Consensus       160 ~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~-~---~~g~~~~~GR~~d~i~~-~G~~v~p~  234 (235)
                            .|+.|||+++||.++.||+++|+.+.+.|+.+|||+|||+|++ |   ++|++++.||+||+|++ +|++|+|.
T Consensus       420 ------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~  493 (624)
T PRK12582        420 ------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVG  493 (624)
T ss_pred             ------CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechH
Confidence                  5788999999999999999999999999878999999999998 4   46899999999999996 79999975

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.8e-33  Score=244.46  Aligned_cols=220  Identities=31%  Similarity=0.514  Sum_probs=191.3

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEc-cCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceE
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (235)
                      ++++++.+|++|.+++....+.++..|++.++. .++++..+++.++++++|++.++|+++..+.+........++++|.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~  333 (560)
T PRK08751        254 CEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKM  333 (560)
T ss_pred             CceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhhee
Confidence            367889999999999866666677677766654 4568999999999999999999999999999876555567889999


Q ss_pred             EEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceE
Q 026632           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (235)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Ge  171 (235)
                      ++.||+++++++.+.+.+.++ +.+++.||+||+++++...... .....+.+|.|++++.++++| +++++++.|+.||
T Consensus       334 v~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Ge  410 (560)
T PRK08751        334 TLGGGMAVQRSVAERWKQVTG-LTLVEAYGLTETSPAACINPLT-LKEYNGSIGLPIPSTDACIKD-DAGTVLAIGEIGE  410 (560)
T ss_pred             eeeCCCCCCHHHHHHHHHHhC-CeEEEeeccccCCCceeccccc-ccccCCCcCccCCCceEEEEC-CCCCCCCCCCceE
Confidence            999999999999999999886 8899999999998866544322 123446789999999999999 4889999999999


Q ss_pred             EEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       172 l~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+++++.++.||+++++.+.+.+..+|||+|||+++++++|++++.||.+|+|+++|++|+|.+
T Consensus       411 l~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~e  474 (560)
T PRK08751        411 LCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNE  474 (560)
T ss_pred             EEEecCccchhhcCChhhhhhccccCCCccccceEEEcCCceEEEEeechhheeECCEEEcHHH
Confidence            9999999999999999999888877899999999999999999999999999999999999863

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-33  Score=240.68  Aligned_cols=232  Identities=26%  Similarity=0.403  Sum_probs=203.0

Q ss_pred             eeeeeccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCC
Q 026632            3 TMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL   80 (235)
Q Consensus         3 ~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~   80 (235)
                      +...+++..+.|++.++....|+.|.+...+.+|.+|+++++.+  ++++..+++.+.++++|+++..|+.++.+.+...
T Consensus       271 ~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~  350 (626)
T KOG1175|consen  271 TSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQ  350 (626)
T ss_pred             hcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhcc
Confidence            34567778888999999999999999999999999999999996  4599999999999999999999999997776554


Q ss_pred             cC--CCCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeC
Q 026632           81 VK--KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        81 ~~--~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      ..  ..++++||++.+.||++.++..+++.+.++...|++.||+||+|+.+........+.+++..+.|+++..+.+.|+
T Consensus       351 ~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de  430 (626)
T KOG1175|consen  351 EDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDE  430 (626)
T ss_pred             ccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECC
Confidence            43  3345679999999999999999999999974469999999999998876554422578899999999999999996


Q ss_pred             CCCccCCCC-CceEEEEEc--C-cccccccCCcccccccccC--CCeEecCceEEEcCCCcEEEEeccCCceEeccEEee
Q 026632          159 DTQKPLPPN-QLGEIWLRG--P-NMMRGYYNNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  232 (235)
Q Consensus       159 ~~~~~v~~g-~~Gel~v~~--~-~~~~~y~~~~~~~~~~~~~--~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~  232 (235)
                       +|++++.+ +.|+|+++.  | .++++|++|++....+...  .|+|.|||.+++|++|++++.||.||+||++|+|++
T Consensus       431 -~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRig  509 (626)
T KOG1175|consen  431 -NGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIG  509 (626)
T ss_pred             -CCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeec
Confidence             88888876 889999997  4 7799999999966655545  899999999999999999999999999999999999


Q ss_pred             cCC
Q 026632          233 SNW  235 (235)
Q Consensus       233 p~~  235 (235)
                      ++|
T Consensus       510 taE  512 (626)
T KOG1175|consen  510 TAE  512 (626)
T ss_pred             HHH
Confidence            865

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.1e-33  Score=240.42  Aligned_cols=218  Identities=26%  Similarity=0.351  Sum_probs=185.3

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...+.|++++.+|++|..++...++.++..|+++++.+++++..+++.++++++|++.++|+.+..++...+......+
T Consensus       188 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~  267 (529)
T PRK07867        188 FGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADN  267 (529)
T ss_pred             hCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCccccccc
Confidence            34566799999999999999977788899999999999889999999999999999999999999988876544333345


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|. +.||+.+++.. +++.+.++ +++++.||+||++.++...+    ....+.+|.|.++  +++++++++++++.|
T Consensus       268 ~lr~-~~gg~~~~~~~-~~~~~~~g-~~l~~~YG~TE~~~~~~~~~----~~~~~~~g~~~~~--~~i~~~~~~~~~~~g  338 (529)
T PRK07867        268 PLRI-VYGNEGAPGDI-ARFARRFG-CVVVDGFGSTEGGVAITRTP----DTPPGALGPLPPG--VAIVDPDTGTECPPA  338 (529)
T ss_pred             ceEE-EecCCCChHHH-HHHHHHhC-CcEEEeecccccccccccCC----CCCCCCcCCCCCC--EEEEECCCCCCCCCC
Confidence            7774 55888887765 66777785 89999999999986654322    2234578999998  677887788889988


Q ss_pred             C------------ceEEEE-EcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          168 Q------------LGEIWL-RGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       168 ~------------~Gel~v-~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      +            .|||++ +++.++.||+++++.+...+ .+|||+|||+++++++|++++.||.||+|+++|++|+|.
T Consensus       339 ~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~  417 (529)
T PRK07867        339 EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTA  417 (529)
T ss_pred             ccccccccccCCcceEEEEecCCcccccccCChHhhhhhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHH
Confidence            8            999999 99999999999999988887 689999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus       418 e  418 (529)
T PRK07867        418 P  418 (529)
T ss_pred             H
Confidence            4

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1e-32  Score=241.05  Aligned_cols=221  Identities=32%  Similarity=0.513  Sum_probs=194.0

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCc
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l   89 (235)
                      ..++.++..+|++|.+++....+.++..|+++++.. ..++..+++.++++++|.+.++|+++..+.+........++++
T Consensus       248 ~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l  327 (560)
T PRK08974        248 PGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSL  327 (560)
T ss_pred             CCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccce
Confidence            345788999999999998777788888898877764 4688999999999999999999999999988766556667899


Q ss_pred             eEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCc
Q 026632           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL  169 (235)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~  169 (235)
                      |.++.||+++++.+.+.+.+.++ +++++.||+||++.++...... .......+|.|++++.++++++ ++++++.|+.
T Consensus       328 r~~~~gg~~~~~~~~~~~~~~~g-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~~~-~~~~~~~g~~  404 (560)
T PRK08974        328 KLSVGGGMAVQQAVAERWVKLTG-QYLLEGYGLTECSPLVSVNPYD-LDYYSGSIGLPVPSTEIKLVDD-DGNEVPPGEP  404 (560)
T ss_pred             eEEEecCccCCHHHHHHHHHHhC-CcEEeeecccccCceeeccCCC-CcccCCccccCcCCCEEEEECC-CCCCCCCCCc
Confidence            99999999999999999999875 8999999999999876654332 2334567899999999999995 7899999999


Q ss_pred             eEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          170 GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       170 Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |||+++++.++.+|+++++.+...+ .+|||+|||+++++++|.+++.||++|+|+++|++|+|++
T Consensus       405 Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~  469 (560)
T PRK08974        405 GELWVKGPQVMLGYWQRPEATDEVI-KDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNE  469 (560)
T ss_pred             eEEEEecCCcchhhcCChhhhhhhh-hcCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHH
Confidence            9999999999999999999888887 7899999999999999999999999999999999999853

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.7e-33  Score=286.55  Aligned_cols=226  Identities=20%  Similarity=0.280  Sum_probs=197.9

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC--CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~--~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      .+...++|++++++|++|..+. ..++.+|..|+++++.+.  +++..+++.++++++|++.++|++++.+.+...... 
T Consensus      4729 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~- 4806 (5163)
T PRK12316       4729 RYELTPDDRVLQFMSFSFDGSH-EGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG- 4806 (5163)
T ss_pred             hcCCCcCCeEEEecCcchhhHH-HHHHHHHhCCCEEEEcCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhhhcccc-
Confidence            4556677999999999999998 688999999999999864  389999999999999999999999999987654433 


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC---CCCCCCcccccCCCcEEEEEeCCCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      .++++|.++.|||++++++.+.+.+.+++++++|.||+||++.++.......   .......+|+|++++.++++| +.+
T Consensus      4807 ~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~ 4885 (5163)
T PRK12316       4807 EPPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLD-GQL 4885 (5163)
T ss_pred             CCCCccEEEEecccCCHHHHHHHHHhCCCCEEEecccCccceEEEEEEEcccccccCCCCCcccccccCCEEEEEC-CCC
Confidence            6789999999999999999999888887799999999999998766443221   123445789999999999999 588


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCcccccccccC-------CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK-------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~-------~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      ++++.|+.|||+|+||.+++||+++|+.+++.|..       .+||+|||+++++++|.+++.||+||+||++|++|.|.
T Consensus      4886 ~~~p~g~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~ 4965 (5163)
T PRK12316       4886 NPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRGFRIELG 4965 (5163)
T ss_pred             CcCCCCCCceEEECCcccchhhcCChhhhhhhccCCCCCCCCcceeecCceeEECCCCcEEEeccccceEeeccEeecHH
Confidence            99999999999999999999999999999888832       35999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus      4966 e 4966 (5163)
T PRK12316       4966 E 4966 (5163)
T ss_pred             H
Confidence            4

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.4e-33  Score=282.18  Aligned_cols=226  Identities=23%  Similarity=0.295  Sum_probs=195.9

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|+++++.|++|..++ ..++.+|..|+++++.++   .++..+++.++++++|++.++|+++..|.+... ..
T Consensus      1753 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~ 1830 (3956)
T PRK12467       1753 AYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QV 1830 (3956)
T ss_pred             hcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-cc
Confidence            4455677999999999999998 678999999999999864   479999999999999999999999999987532 23


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCC---CCCCCCCcccccCCCcEEEEEeCCC
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---AGSRNIGSAGALAPGVEALIVSVDT  160 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~---~~~~~~~~~g~p~~~~~~~~~d~~~  160 (235)
                      ..++++|.++.|||++++++.+.+.+.+++.+++|.||+||++..++.....   ........+|+|++++.+.++| +.
T Consensus      1831 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~ 1909 (3956)
T PRK12467       1831 EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILD-AS 1909 (3956)
T ss_pred             ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEEC-CC
Confidence            3578999999999999999999999998878899999999998766543221   1122345789999999999999 48


Q ss_pred             CccCCCCCceEEEEEcCcccccccCCccccccccc-------CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          161 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       161 ~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-------~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      +++++.|+.|||+|+|+.+++||+++|+.+++.|.       ..+||+|||+++++++|.++++||+||+||++|++|.|
T Consensus      1910 ~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel 1989 (3956)
T PRK12467       1910 LNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIEL 1989 (3956)
T ss_pred             CCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEech
Confidence            99999999999999999999999999999998873       23599999999999999999999999999999999998


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      .|
T Consensus      1990 ~e 1991 (3956)
T PRK12467       1990 GE 1991 (3956)
T ss_pred             HH
Confidence            64

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.3e-32  Score=237.02  Aligned_cols=225  Identities=22%  Similarity=0.280  Sum_probs=192.7

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      +.....+++++..|++|..++ ..++.++..|+++++.++   .++..+++.+++++++.+..+|+++..+.........
T Consensus       179 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~  257 (503)
T PRK04813        179 FALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEE  257 (503)
T ss_pred             cCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcc
Confidence            344567999999999999998 677899999999998875   4789999999999999999999998887665555556


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC---CCCCCCcccccCCCcEEEEEeCCCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      .++++|.++++|+++++.+.+++.+.|++..+++.||+||++..+.......   .......+|.|.++++++++| +++
T Consensus       258 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~  336 (503)
T PRK04813        258 HLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIID-EEG  336 (503)
T ss_pred             cCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEEC-CCC
Confidence            7889999999999999999999999997789999999999986554322211   123344689999999999999 588


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCccccccccc---CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID---KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~---~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++.|+.|||+++++.++.||+++++.+...|.   ..+||+|||++++ ++|++++.||.||+|+++|++|+|.+
T Consensus       337 ~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~  412 (503)
T PRK04813        337 TKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEE  412 (503)
T ss_pred             CCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHH
Confidence            9999999999999999999999999998887762   2359999999999 89999999999999999999999863

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=8.7e-33  Score=280.98  Aligned_cols=225  Identities=23%  Similarity=0.297  Sum_probs=196.4

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc---CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA---KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~---~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|++++..|++|..++ ..++.+|..|+++++.+   ..++..+++.++++++|++.++|+++..+.+...  .
T Consensus      1308 ~~~~~~~d~~l~~~~~~fd~s~-~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~ 1384 (4334)
T PRK05691       1308 TYALDDSDVLMQKAPISFDVSV-WECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--A 1384 (4334)
T ss_pred             hcCCCCCCEEEEeCCccHHHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--c
Confidence            3455677999999999999998 68899999999999985   3689999999999999999999999999886533  2


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                      ..++++|.++.|||++++++.+.+.+.+++++++|.||+||++..+........+.....+|+|++++.+.++|+ .+++
T Consensus      1385 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~ 1463 (4334)
T PRK05691       1385 AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDA-ELNL 1463 (4334)
T ss_pred             ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECC-CCCC
Confidence            357899999999999999999999999988999999999999876554322222334567899999999999995 7899


Q ss_pred             CCCCCceEEEEEcCcccccccCCcccccccccC-------CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK-------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~-------~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|+.|||+|+|+.+++||+++|+.+.+.|..       .+||+|||+++++++|.+++.||+|++||++|++|.|.|
T Consensus      1464 vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~e 1542 (4334)
T PRK05691       1464 LPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEE 1542 (4334)
T ss_pred             CCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHH
Confidence            999999999999999999999999999888732       359999999999999999999999999999999999864

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.1e-32  Score=242.96  Aligned_cols=224  Identities=17%  Similarity=0.164  Sum_probs=184.5

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--   80 (235)
                      .+...++|++++..++.|+.+.  .++.+|..|+++++.+.    +++..+++.++++++|++.++|+++..+.+...  
T Consensus       299 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  376 (655)
T PRK03584        299 HCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVP  376 (655)
T ss_pred             hcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCc
Confidence            3455677999999999998654  46789999999999752    489999999999999999999999998876532  


Q ss_pred             cCCCCCCCceEEEecccCCcHHHHHHHHHhCC-CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCC
Q 026632           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      ....+++++|.++++|+++++++.+++.+.++ ++.+.+.||+||++......... .....+++|.|.++++++++|+ 
T Consensus       377 ~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~~~ivd~-  454 (655)
T PRK03584        377 GETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPL-LPVYRGEIQCRGLGMAVEAWDE-  454 (655)
T ss_pred             cccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCC-CCcCCCccCCCcCCceeEEECC-
Confidence            22346789999999999999999999999884 57899999999986543322211 1334577899999999999995 


Q ss_pred             CCccCCCCCceEEEEEcC--cccccccCCccccc--ccc--cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          160 TQKPLPPNQLGEIWLRGP--NMMRGYYNNEQATK--LTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       160 ~~~~v~~g~~Gel~v~~~--~~~~~y~~~~~~~~--~~~--~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      +|+++ .|+.|||++++|  +++.||+++++.+.  ..+  ..+|||+|||++++|++|++++.||+||+||++|++|+|
T Consensus       455 ~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p  533 (655)
T PRK03584        455 DGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGT  533 (655)
T ss_pred             CCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECH
Confidence            78888 899999999995  78999999887532  121  125799999999999999999999999999999999998


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      .|
T Consensus       534 ~E  535 (655)
T PRK03584        534 AE  535 (655)
T ss_pred             HH
Confidence            64

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.4e-32  Score=239.45  Aligned_cols=219  Identities=28%  Similarity=0.437  Sum_probs=177.2

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCce
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLK   90 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr   90 (235)
                      ...++++..+|++|..++ ...+.++..|+++++.+++++..+++.|+++++|++.++|+++..|.+.........++++
T Consensus       225 ~~~~~~l~~~pl~h~~g~-~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  303 (579)
T PLN03102        225 GTCPVYLWTLPMFHCNGW-TFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPV  303 (579)
T ss_pred             CCCCeEEecCChhhhcch-hHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccce
Confidence            345789999999999998 5667788889999988888999999999999999999999999999886544333456788


Q ss_pred             EEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC-----C-------CCCCCcccccCCCcEEEEEeC
Q 026632           91 LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-----G-------SRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        91 ~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~-----~-------~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      .+++||+++++++.+.+.+ ++ .++++.||+||+++.+.......     .       ....+..+.+.+  .+.+++.
T Consensus       304 ~~~~gg~~~~~~~~~~~~~-~g-~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~  379 (579)
T PLN03102        304 HVLTGGSPPPAALVKKVQR-LG-FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNK  379 (579)
T ss_pred             EEEECCCCCCHHHHHHHHH-cC-CeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEecc
Confidence            8999999999999999876 54 89999999999986443221100     0       011122233333  4556666


Q ss_pred             CCCccCCC--CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          159 DTQKPLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       159 ~~~~~v~~--g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.+++++.  ++.|||++++|.++.||+++++.+.+.| .+|||+|||+|++|++|++++.||+||+|+++|++|+|.|
T Consensus       380 ~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~e  457 (579)
T PLN03102        380 ETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVE  457 (579)
T ss_pred             ccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHH
Confidence            67777764  3689999999999999999999999888 6899999999999999999999999999999999999864

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.8e-32  Score=238.15  Aligned_cols=224  Identities=24%  Similarity=0.357  Sum_probs=186.4

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +....+|++++.+|++|.+++ ..++.++..|+++++.+ .+++..+++.++++++++++++|+++..+...........
T Consensus       219 ~~~~~~~~~l~~~pl~h~~g~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  297 (576)
T PRK05620        219 LAVTHGESFLCCVPIYHVLSW-GVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPER  297 (576)
T ss_pred             cCCCCCCeEEEeCChHHhhhh-HHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCccc
Confidence            445667999999999999998 56788899999998875 5789999999999999999999999988876543333345


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---C---CCCCcccccCCCcEEEEEeCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---S---RNIGSAGALAPGVEALIVSVDT  160 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---~---~~~~~~g~p~~~~~~~~~d~~~  160 (235)
                      .++|.++.+|+++++++.+.+.+.++ +++++.||+||++.++........   .   ......|++.++++++++++  
T Consensus       298 ~~l~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~--  374 (576)
T PRK05620        298 MSLQEIYVGGSAVPPILIKAWEERYG-VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND--  374 (576)
T ss_pred             CceeEEEEcCCCCCHHHHHHHHHHhC-CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC--
Confidence            68999999999999999999999886 899999999999976554322110   0   11236788999999999984  


Q ss_pred             CccCC--CCCceEEEEEcCcccccccCCcccc----------------cccccCCCeEecCceEEEcCCCcEEEEeccCC
Q 026632          161 QKPLP--PNQLGEIWLRGPNMMRGYYNNEQAT----------------KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKE  222 (235)
Q Consensus       161 ~~~v~--~g~~Gel~v~~~~~~~~y~~~~~~~----------------~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d  222 (235)
                      ++.++  +++.|||+++++.++.+|+++++.+                ...+..++||+|||+++++++|.+++.||.||
T Consensus       375 g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d  454 (576)
T PRK05620        375 GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARD  454 (576)
T ss_pred             CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhh
Confidence            66664  5788999999999999999998877                22344578999999999999999999999999


Q ss_pred             ceEeccEEeecCC
Q 026632          223 LIKYKGFQVTSNW  235 (235)
Q Consensus       223 ~i~~~G~~v~p~~  235 (235)
                      +|+.+|++|+|++
T Consensus       455 ~i~~~G~~i~~~e  467 (576)
T PRK05620        455 VIRSGGEWIYSAQ  467 (576)
T ss_pred             hhhcCCEEEcHHH
Confidence            9999999999864

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-32  Score=251.13  Aligned_cols=217  Identities=21%  Similarity=0.262  Sum_probs=174.9

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++.+|++|.+|+...++.++..|+++++.++++++.+++.|+++++|+++++|+++..+++........++
T Consensus       641 ~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~  720 (994)
T PRK07868        641 AALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNH  720 (994)
T ss_pred             cCCCCCCeEEEecChHHHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCC
Confidence            34566799999999999999977777788888888888889999999999999999999999999999886544444677


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCc-EEEEE--e-------
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV-EALIV--S-------  157 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~-~~~~~--d-------  157 (235)
                      ++|.++  |+.+++++++++.+.|+++.+++.||+||++.+....  .  ..+.+++|+|++++ ++++.  |       
T Consensus       721 slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~--~~~~~svG~p~pg~~~v~i~~~d~~~g~li  794 (994)
T PRK07868        721 PVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--S--GAKIGSKGRPLPGAGRVELAAYDPEHDLIL  794 (994)
T ss_pred             ceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc--C--CCCCcccCCccCCCCceeEEEecCcCCcee
Confidence            899877  3349999999999999878999999999987654321  1  23457899999997 56553  1       


Q ss_pred             -CCCC--ccCCCCCceEEEEEcCcccccccCCcccc--ccccc-CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEe
Q 026632          158 -VDTQ--KPLPPNQLGEIWLRGPNMMRGYYNNEQAT--KLTID-KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV  231 (235)
Q Consensus       158 -~~~~--~~v~~g~~Gel~v~~~~~~~~y~~~~~~~--~~~~~-~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v  231 (235)
                       .++|  +.++.|+.|||+++++..    + +|+.+  ...|. .+|||+|||+|++|++|++++.||+||+||++|++|
T Consensus       795 ~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I  869 (994)
T PRK07868        795 EDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPV  869 (994)
T ss_pred             ecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceE
Confidence             1345  567899999999998753    2 33322  22232 479999999999999999999999999999999999


Q ss_pred             ecCC
Q 026632          232 TSNW  235 (235)
Q Consensus       232 ~p~~  235 (235)
                      +|+|
T Consensus       870 ~p~E  873 (994)
T PRK07868        870 YTEP  873 (994)
T ss_pred             cHHH
Confidence            9864

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=6e-32  Score=252.99  Aligned_cols=218  Identities=25%  Similarity=0.420  Sum_probs=185.3

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++.+|++|.+++...++.++..|+++++.+. .+...+.+.++++++|++.++|+++..+.+..  ...++
T Consensus       829 ~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~  906 (1140)
T PRK06814        829 IDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDF  906 (1140)
T ss_pred             hCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccc
Confidence            4456779999999999999997788999999999998864 56788899999999999999999999887753  33467


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.||+++++++.+.+.+.++ .++++.||+||+++.+......  ....+++|+|.|++++++.+.+ +    .
T Consensus       907 ~~lr~v~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~~~-~----~  978 (1140)
T PRK06814        907 RSLRYVFAGAEKVKEETRQTWMEKFG-IRILEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEPVP-G----I  978 (1140)
T ss_pred             cceeEEEEcCCcCCHHHHHHHHHHhC-CcEEeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEeecC-C----C
Confidence            89999999999999999999999886 8999999999999866543322  3445689999999999998742 2    3


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|||+++++.++.||+++++........+|||+|||++++|++|++++.||.||+||++|++|+|.|
T Consensus       979 ~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~e 1047 (1140)
T PRK06814        979 DEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAA 1047 (1140)
T ss_pred             CCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHH
Confidence            678999999999999999876543222236899999999999999999999999999999999999864

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.9e-32  Score=235.26  Aligned_cols=220  Identities=24%  Similarity=0.321  Sum_probs=180.9

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+....+|+++.++|++|.+++...++.++..|+++++.+.+++..+++.++++++|++...|+.+..++..........
T Consensus       185 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~  264 (540)
T PRK13388        185 RFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDAD  264 (540)
T ss_pred             HhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccc
Confidence            34456679999999999999997667778999999999888899999999999999999999999998887654333233


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEE-----------E
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEAL-----------I  155 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~-----------~  155 (235)
                      .++|.+ . |++++++..+.+.+.++ .++++.||+||++.++....    ....+.+|+|++++.+.           +
T Consensus       265 ~~l~~~-~-G~~~~~~~~~~~~~~~~-~~l~~~YG~tE~~~~~~~~~----~~~~~~vG~p~~g~~i~~~~~~~~~~~~~  337 (540)
T PRK13388        265 NPLRVA-F-GNEASPRDIAEFSRRFG-CQVEDGYGSSEGAVIVVREP----GTPPGSIGRGAPGVAIYNPETLTECAVAR  337 (540)
T ss_pred             cceEEE-E-CCCCCHHHHHHHHHHhC-CceecccccccccceeecCC----CCCCCCCCCCCCCcEEEcCCCCcccccee
Confidence            456643 3 56778888899999886 89999999999987665322    23356789999987642           3


Q ss_pred             EeCCCCccC-CCCCceEEEEE-cCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          156 VSVDTQKPL-PPNQLGEIWLR-GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       156 ~d~~~~~~v-~~g~~Gel~v~-~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      +| ++|+++ ++++.|||+++ ++.++.||+++++.+.+.+ .+|||+|||+++++++|++++.||+||+||++|++|+|
T Consensus       338 ~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p  415 (540)
T PRK13388        338 FD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSA  415 (540)
T ss_pred             cc-CccccccCCCcceEEEEecCCcccccccCChHHHHHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCH
Confidence            33 345554 45678999998 9999999999999998887 68999999999999999999999999999999999998


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      .+
T Consensus       416 ~e  417 (540)
T PRK13388        416 AP  417 (540)
T ss_pred             HH
Confidence            64

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=3.4e-32  Score=231.83  Aligned_cols=203  Identities=25%  Similarity=0.328  Sum_probs=163.9

Q ss_pred             CCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceE
Q 026632           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL   91 (235)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~   91 (235)
                      .+++.++++|++|.+|+ ..++.++..|+++++.+..+..........+++++++++|+++..+.+..   ...++++|.
T Consensus       159 ~~~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l~~l~~  234 (452)
T PRK07445        159 QQVNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWLAQFRT  234 (452)
T ss_pred             CCCceEeccCchhhhhH-HHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhhhcceE
Confidence            34578899999999999 57788999999999987432222233445788999999999999988632   234789999


Q ss_pred             EEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceE
Q 026632           92 VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE  171 (235)
Q Consensus        92 i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Ge  171 (235)
                      ++.||+++++++.+.+.+ + +.++++.||+||++..+..............+|+|.++++++++         .|+.||
T Consensus       235 i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~g~~Ge  303 (452)
T PRK07445        235 ILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------ANQTGN  303 (452)
T ss_pred             EEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------CCCcce
Confidence            999999999999998876 4 58999999999998654433222112234578999999999887         367899


Q ss_pred             EEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          172 IWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       172 l~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |++++|.++.||++++.      ..++||+|||++++|++|++++.||+||+|+++|++|+|.|
T Consensus       304 l~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~e  361 (452)
T PRK07445        304 ITIQAQSLALGYYPQIL------DSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAE  361 (452)
T ss_pred             EEEeCCccchhhcCCcc------CCCCEEECCCEEEEcCCCCEEEEeecCCEEEECCEEECHHH
Confidence            99999999999997532      25789999999999999999999999999999999999864

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=7.4e-32  Score=239.13  Aligned_cols=223  Identities=17%  Similarity=0.166  Sum_probs=179.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--c
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--V   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--~   81 (235)
                      +...++|++++..|+.|+...  .++.+|..|+++++.+.    .++..+++.++++++|++..+|+++..+.+...  .
T Consensus       301 ~~~~~~d~~~~~~~~~~~~~~--~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~  378 (652)
T TIGR01217       301 CDLGPGDRLFYYTTTGWMMWN--WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPA  378 (652)
T ss_pred             cCCCCCcEEEEeCCcchhhhH--HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCcc
Confidence            455677999999999998643  35689999999999852    378999999999999998887777766654321  2


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCC-CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT  160 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~  160 (235)
                      ...+++++|.++++|+++++++.+++.+.++ +..+.+.||+||++.+....... .....+++|.|.++++++++|+ +
T Consensus       379 ~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~ivd~-~  456 (652)
T TIGR01217       379 RTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPT-LPVHIGEIQAPGLGTAVQSWDP-E  456 (652)
T ss_pred             ccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCC-CCCcCCccCCCcCCCceEEECC-C
Confidence            3446889999999999999999999999885 34577899999986443322211 1334567889999999999995 7


Q ss_pred             CccCCCCCceEEEEEcC--cccccccCCccccc--cc-c-cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          161 QKPLPPNQLGEIWLRGP--NMMRGYYNNEQATK--LT-I-DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       161 ~~~v~~g~~Gel~v~~~--~~~~~y~~~~~~~~--~~-~-~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      |+++ .|+.|||++++|  .++.+||++++.+.  .. + +.+|||+|||+|++|++|++++.||+||+||++|++|+|+
T Consensus       457 g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~  535 (652)
T TIGR01217       457 GKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSA  535 (652)
T ss_pred             CCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHH
Confidence            8888 599999999996  68899999987543  22 2 1368999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus       536 E  536 (652)
T TIGR01217       536 E  536 (652)
T ss_pred             H
Confidence            4

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=8.7e-32  Score=235.48  Aligned_cols=223  Identities=27%  Similarity=0.388  Sum_probs=181.7

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC-CCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK-FDLS   87 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-~~l~   87 (235)
                      ...++|++++.+|++|.+++...+..+++.|.++++ ..+++..+++.++++++|++.++|+++..+.+...... ..++
T Consensus       232 ~~~~~~~~~~~~p~~h~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  310 (567)
T PLN02479        232 GMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICL-RQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLP  310 (567)
T ss_pred             CCCCCCEEEEecchhhhhhHHHHHHHHhhcCceEec-cCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccccccc
Confidence            345668999999999999986555566677766655 56899999999999999999999999999887654333 2578


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCC---------CCCCCCCcccccCCCcE-EEEEe
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF---------AGSRNIGSAGALAPGVE-ALIVS  157 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~---------~~~~~~~~~g~p~~~~~-~~~~d  157 (235)
                      ++|.++.+|+++++++.+++.+.  +.++++.||+||+++.+..+...         .........|.+.++.. ++++|
T Consensus       311 ~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d  388 (567)
T PLN02479        311 RVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVD  388 (567)
T ss_pred             ceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEc
Confidence            89999999999999999999875  48999999999996543322100         00011124566777765 78888


Q ss_pred             CCCCccCCCC--CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          158 VDTQKPLPPN--QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       158 ~~~~~~v~~g--~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++++++.+  +.|||+++++.++.||+++++.+.+.+ .++||+|||+++++++|++++.||.||+|+++|++|+|+|
T Consensus       389 ~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~e  467 (567)
T PLN02479        389 TKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLE  467 (567)
T ss_pred             CCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHH
Confidence            7678888754  689999999999999999999999988 6899999999999999999999999999999999999864

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.5e-31  Score=238.96  Aligned_cols=224  Identities=17%  Similarity=0.158  Sum_probs=182.3

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++..|++|+++. ..++.+|..|+++++.++ +++..+++.++++++|++.++|+++..+.+.......++
T Consensus       392 ~~l~~~d~~~~~~~l~w~~g~-~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dl  470 (728)
T PLN03052        392 LDIRKGDIVCWPTNLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDW  470 (728)
T ss_pred             cCCCCCcEEEECCCcHHHhHH-HHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCCh
Confidence            345677999999999999998 577899999999999874 466789999999999999999999999987754455678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++++|++++++..+++.+.++...+.+.||+||++++....... .....+.+|.|.+++++.++| ++|++++.
T Consensus       471 ssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~-~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~  548 (728)
T PLN03052        471 SSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL-QPQAFAAFSTPAMGCKLFILD-DSGNPYPD  548 (728)
T ss_pred             hheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCC-CCCCCCccccCCCCceEEEEC-CCCCCCCC
Confidence            9999999999999999999988887656799999999998754432221 133456789999999999999 48999999


Q ss_pred             CC--ceEEEEEcCc--ccccccCCcccccccc------cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQ--LGEIWLRGPN--MMRGYYNNEQATKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~--~Gel~v~~~~--~~~~y~~~~~~~~~~~------~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+  .|||+++++.  ...+|++++. ....|      +...||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       549 g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~E  626 (728)
T PLN03052        549 DAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVE  626 (728)
T ss_pred             CCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHH
Confidence            85  6999997642  2345555432 22222      12238999999999999999999999999999999999865

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-31  Score=232.20  Aligned_cols=220  Identities=25%  Similarity=0.360  Sum_probs=185.2

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      ...++|+++...|++|.+++ ...+.++..|+++++.. .+++..+++.++++++|.+.++|+++..+.+........++
T Consensus       216 ~~~~~d~~~~~~p~~h~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~  294 (542)
T PRK06018        216 GTSAADTMLPVVPLFHANSW-GIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLP  294 (542)
T ss_pred             CCCCCCEEEEecCHHHHhhh-HHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcc
Confidence            34566999999999999998 45567889999998875 57899999999999999999999999999887766666788


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---------CCCCCcccccCCCcEEEEEeC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      ++|.++.+|+++++++.+++++ ++ .++++.||+||++.++........         .......|+|.++++++++|+
T Consensus       295 ~lr~~~~~G~~l~~~~~~~~~~-~~-~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~  372 (542)
T PRK06018        295 HLKMVVCGGSAMPRSMIKAFED-MG-VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDD  372 (542)
T ss_pred             cceEEEEcCCCCCHHHHHHHHH-hC-CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECC
Confidence            9999999999999999999999 75 999999999999987654321100         011246799999999999995


Q ss_pred             CCCccCCCC--CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          159 DTQKPLPPN--QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       159 ~~~~~v~~g--~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                       +++.++.+  +.|||+++++.++.+|+++.   ...++.++||+|||+++++++|++++.||.+|+|+++|++|+|.+
T Consensus       373 -~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~e  447 (542)
T PRK06018        373 -AGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSID  447 (542)
T ss_pred             -CCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHH
Confidence             77777653  67999999999999999842   334457899999999999999999999999999999999999863

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.1e-32  Score=236.91  Aligned_cols=222  Identities=23%  Similarity=0.414  Sum_probs=175.7

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCC----CHHHHHHHHHhccceEEeecHHHHHHHHhc-C---CcC
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH-G---LVK   82 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~-~---~~~   82 (235)
                      .+++++++++|++|..|+...++.+++.|+++++.++.    ++..+++.+++++++. ...|+++..+... .   ...
T Consensus       205 ~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~-~~~p~~~~~~~~~~~~~~~~~  283 (578)
T PRK05850        205 PPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAF-SAAPNFAFELAVRKTSDDDMA  283 (578)
T ss_pred             CCcceEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeE-EeCCcHHHHHHHHhcchhhhc
Confidence            34689999999999999988899999999999998642    7899999999999985 4566654443321 1   112


Q ss_pred             CCCCCCceEEEecccCCcHHHHHHHHHhCC-----CCceeccccccccccccccccCCCC--------------------
Q 026632           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG--------------------  137 (235)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~i~~~yG~tE~g~~~~~~~~~~~--------------------  137 (235)
                      ...++++|.++.||+++++++.++|.+.|+     +..+++.||+||++..+........                    
T Consensus       284 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  363 (578)
T PRK05850        284 GLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCE  363 (578)
T ss_pred             CcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecC
Confidence            345678999999999999999999998874     2468999999998754432211000                    


Q ss_pred             ---CCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCccccccccc-----------CCCeEecC
Q 026632          138 ---SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-----------KKGWVHTG  203 (235)
Q Consensus       138 ---~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-----------~~g~~~Tg  203 (235)
                         ......+|.|. +.+++++|++++++++.|+.|||+++|+.++.||+++++.+++.|.           .++||+||
T Consensus       364 ~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TG  442 (578)
T PRK05850        364 TGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTG  442 (578)
T ss_pred             CCCCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeecc
Confidence               00001234443 4789999987889999999999999999999999999999988873           25799999


Q ss_pred             ceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          204 DLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       204 Dl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+++++ +|++++.||+||+|+++|++|+|+|
T Consensus       443 Dl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~e  473 (578)
T PRK05850        443 DLGFIS-EGELFIVGRIKDLLIVDGRNHYPDD  473 (578)
T ss_pred             ceeeEE-CCEEEEEcccccEEEECCeecCHHH
Confidence            999997 8999999999999999999999864

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1e-31  Score=273.19  Aligned_cols=225  Identities=18%  Similarity=0.224  Sum_probs=196.0

Q ss_pred             eeccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcC
Q 026632            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK   82 (235)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~   82 (235)
                      ..+...++|++++..|+++..+. ..++.++..|+++++.+.   .++..+++.++++++|++..+|+++..++...   
T Consensus      3903 ~~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~--- 3978 (4334)
T PRK05691       3903 PYLALSEADVIAQTASQSFDISV-WQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED--- 3978 (4334)
T ss_pred             HhcCCCccceEEEecCCchhHHH-HHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---
Confidence            34556778999999999999999 688999999999999864   57999999999999999999999999887542   


Q ss_pred             CCCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC--CCCCCcccccCCCcEEEEEeCCC
Q 026632           83 KFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG--SRNIGSAGALAPGVEALIVSVDT  160 (235)
Q Consensus        83 ~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~--~~~~~~~g~p~~~~~~~~~d~~~  160 (235)
                      ...++++|.++.|||++++++.+.|.+.+++++++|.||+||++..+........  ......+|+|+++..+.++| +.
T Consensus      3979 ~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~ 4057 (4334)
T PRK05691       3979 RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EA 4057 (4334)
T ss_pred             cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CC
Confidence            2346789999999999999999999998888999999999999986654332211  22234689999999999999 58


Q ss_pred             CccCCCCCceEEEEEcCcccccccCCccccccccc-------CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          161 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       161 ~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-------~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      ++++|.|..|||+|+|+.+++||+++|+.|++.|.       .++||+|||+++++++|.+.++||+|+.||++|+||.+
T Consensus      4058 ~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel 4137 (4334)
T PRK05691       4058 LELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIEL 4137 (4334)
T ss_pred             CCCCCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecH
Confidence            99999999999999999999999999999998883       34699999999999999999999999999999999987


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      .|
T Consensus      4138 ~e 4139 (4334)
T PRK05691       4138 GE 4139 (4334)
T ss_pred             HH
Confidence            64

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.98  E-value=2.4e-31  Score=225.46  Aligned_cols=211  Identities=30%  Similarity=0.465  Sum_probs=177.2

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+...++|++++.+|++|.+++ ..++.++..|+++++.+.+  ..+++.++++++|.+.++|+++..+++.....    
T Consensus       146 ~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~----  218 (436)
T TIGR01923       146 NLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGHN----  218 (436)
T ss_pred             hcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC----
Confidence            3445667999999999999998 6788999999999998765  38999999999999999999999998865422    


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.+|+++++++.+.+.+.  +..+++.||+||++.............. ..+|.|++++++++..++.      
T Consensus       219 ~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~-~~~G~~~~~~~~~i~~~~~------  289 (436)
T TIGR01923       219 ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHAR-PDVGRPLAGREIKIKVDNK------  289 (436)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccc-cCCCccCCCcEEEEEeCCC------
Confidence            689999999999999999998764  5999999999999876554333221222 2489999999999844322      


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      ++.|||+++++.++.+|+++++.+...+ .++||+|||+++++++|++++.||.||+||++|++|+|.
T Consensus       290 ~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~  356 (436)
T TIGR01923       290 EGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPE  356 (436)
T ss_pred             CCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccceEEEcCCCCEEEeccccCeEEeCCEeeCHH
Confidence            2779999999999999999877766554 679999999999999999999999999999999999985

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.98  E-value=4.2e-31  Score=232.60  Aligned_cols=220  Identities=23%  Similarity=0.295  Sum_probs=175.9

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++.+|++|.+|+...++.++..|+++++.+++++..+++.++++++|++.++|++++.+.+..........
T Consensus       235 ~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~  314 (600)
T PRK08279        235 LRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDH  314 (600)
T ss_pred             cCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCc
Confidence            45667799999999999999988888899999999999999999999999999999999999999998876554444456


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCC----CcEEEEEeCCCC--
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAP----GVEALIVSVDTQ--  161 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~----~~~~~~~d~~~~--  161 (235)
                      ++|.+  +|+.+++++++.+.+.|+...+++.||+||++......     ....+++|.+.+    ...+...+.+.+  
T Consensus       315 ~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  387 (600)
T PRK08279        315 RLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV-----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEP  387 (600)
T ss_pred             ceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc-----CCCCcccccccccccccceeeeeccCcCce
Confidence            77764  47789999999999999856799999999998643321     122344555444    333322222222  


Q ss_pred             --------ccCCCCCceEEE--EEcCcccccccCCcccccccc------cCCCeEecCceEEEcCCCcEEEEeccCCceE
Q 026632          162 --------KPLPPNQLGEIW--LRGPNMMRGYYNNEQATKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIK  225 (235)
Q Consensus       162 --------~~v~~g~~Gel~--v~~~~~~~~y~~~~~~~~~~~------~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~  225 (235)
                              ..++.|+.||++  +.++.++.|| ++++.+...+      ..++||+|||+|+++++|++++.||.||+||
T Consensus       388 i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik  466 (600)
T PRK08279        388 VRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFR  466 (600)
T ss_pred             eeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEE
Confidence                    357889999998  6789999999 8887776654      2368999999999999999999999999999


Q ss_pred             eccEEeecCC
Q 026632          226 YKGFQVTSNW  235 (235)
Q Consensus       226 ~~G~~v~p~~  235 (235)
                      ++|++|+|+|
T Consensus       467 ~~G~~i~p~e  476 (600)
T PRK08279        467 WKGENVATTE  476 (600)
T ss_pred             ECCcccCHHH
Confidence            9999999864

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.4e-30  Score=225.35  Aligned_cols=222  Identities=27%  Similarity=0.356  Sum_probs=176.7

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCc
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l   89 (235)
                      ...++++++.+|++|..++...++.++ .+++.++..++++..+++.++++++|++.++|+++..|++........+.+.
T Consensus       220 ~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  298 (545)
T PRK08162        220 MPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHP  298 (545)
T ss_pred             CCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccc
Confidence            445689999999999999855544445 4555555567899999999999999999999999999998755444445567


Q ss_pred             eEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC-C--------CCCCCcccccCCC-cEEEEEeCC
Q 026632           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-G--------SRNIGSAGALAPG-VEALIVSVD  159 (235)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~-~--------~~~~~~~g~p~~~-~~~~~~d~~  159 (235)
                      +.++.+|+++++++.+.+.+.  +.++++.||+||+++.+..+.... .        .......|.+.+. ..++++|++
T Consensus       299 ~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~  376 (545)
T PRK08162        299 VHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPD  376 (545)
T ss_pred             eEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCC
Confidence            778899999999999998764  489999999999975444322110 0        0112334555442 357888877


Q ss_pred             CCccCCC-C-CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          160 TQKPLPP-N-QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       160 ~~~~v~~-g-~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++++. | +.|||+++++.++.||+++++.+...| .++||+|||++++|++|++++.||.||+++.+|++|+|.+
T Consensus       377 ~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~e  453 (545)
T PRK08162        377 TMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIE  453 (545)
T ss_pred             CCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHH
Confidence            8888875 3 469999999999999999999998888 7899999999999999999999999999999999999863

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.97  E-value=6.7e-31  Score=230.41  Aligned_cols=226  Identities=25%  Similarity=0.409  Sum_probs=180.9

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcC---
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG---   79 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~---   79 (235)
                      .+...++|++++++|++|.+|+...++.++..|+++++.+.    .++..+++.+.+++++.....|..+..+....   
T Consensus       212 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~  291 (579)
T PRK09192        212 GLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK  291 (579)
T ss_pred             cccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc
Confidence            44556779999999999999998788888999999877652    26889999999999987665444333333222   


Q ss_pred             CcCCCCCCCceEEEecccCCcHHHHHHHHHhCCC-----CceeccccccccccccccccCCCC-----------------
Q 026632           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPS-----ATVIQGYGLTETSGIATMENSFAG-----------------  137 (235)
Q Consensus        80 ~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~-----~~i~~~yG~tE~g~~~~~~~~~~~-----------------  137 (235)
                      .....+++++|.++.||+++++++.+.+.+.++.     ..+++.||+||++.+.........                 
T Consensus       292 ~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (579)
T PRK09192        292 DLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKA  371 (579)
T ss_pred             cccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCcee
Confidence            1223467899999999999999999999998742     358899999999865543221100                 


Q ss_pred             ---------CCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEE
Q 026632          138 ---------SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF  208 (235)
Q Consensus       138 ---------~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~  208 (235)
                               ......+|+|+|+++++++|+ +++.++.|+.|||+++++.++.||+++ ..+.+.+..++||+|||++++
T Consensus       372 ~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~-~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~  449 (579)
T PRK09192        372 VAPGAETRRVRTFVNCGKALPGHEIEIRNE-AGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL  449 (579)
T ss_pred             eccCCCCccceeEeecCCcCCCcEEEEECC-CCCCCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE
Confidence                     001236899999999999995 688999999999999999999999999 566666778999999999999


Q ss_pred             cCCCcEEEEeccCCceEeccEEeecCC
Q 026632          209 DGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       209 ~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                       ++|++++.||.||+||++|++|+|.|
T Consensus       450 -~~G~l~~~GR~dd~i~~~G~~v~p~e  475 (579)
T PRK09192        450 -LDGYLYITGRAKDLIIINGRNIWPQD  475 (579)
T ss_pred             -ECCEEEEEeccccEEEECCCccCHHH
Confidence             89999999999999999999999864

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.2e-30  Score=225.56  Aligned_cols=220  Identities=28%  Similarity=0.441  Sum_probs=178.7

Q ss_pred             cEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcC----CcCCCC
Q 026632           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHG----LVKKFD   85 (235)
Q Consensus        14 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~----~~~~~~   85 (235)
                      |++++++|++|.+|+...++.++..|+++++.++    .++..+++.+++++++++...|..+..+.+..    .....+
T Consensus       195 d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  274 (545)
T PRK07768        195 DVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFD  274 (545)
T ss_pred             ceeEEeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCC
Confidence            8999999999999997778889999999988764    26788999999999999877777666555432    111356


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHh---CC--CCceeccccccccccccccccCCCC-----------------------
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKN---VP--SATVIQGYGLTETSGIATMENSFAG-----------------------  137 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~---~~--~~~i~~~yG~tE~g~~~~~~~~~~~-----------------------  137 (235)
                      ++++|.++.+|+++++++.+++.+.   ++  ...+++.||+||++..+........                       
T Consensus       275 ~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (545)
T PRK07768        275 LSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKG  354 (545)
T ss_pred             chheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCC
Confidence            7899999999999999999999874   43  2359999999999875543221100                       


Q ss_pred             -CCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEE
Q 026632          138 -SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYV  216 (235)
Q Consensus       138 -~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~  216 (235)
                       .......|+|+++++++++| ++++++++|+.|||+++++.++.+|++++... .....++||+|||+++++++|.+++
T Consensus       355 ~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~-~~~~~~g~~~TGDl~~~~~~g~l~~  432 (545)
T PRK07768        355 NTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGVGVIELRGESVTPGYLTMDGFI-PAQDADGWLDTGDLGYLTEEGEVVV  432 (545)
T ss_pred             CcceEEeccCCCCCCEEEEEC-CCCCCCCCCCEEEEEEccCcccccccCCCCCc-ccccCCCeeeccceEEEecCCEEEE
Confidence             11234689999999999999 57899999999999999999999999765443 3334678999999999999999999


Q ss_pred             EeccCCceEeccEEeecCC
Q 026632          217 VDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       217 ~GR~~d~i~~~G~~v~p~~  235 (235)
                      .||.||+|+++|++|+|++
T Consensus       433 ~GR~~d~i~~~G~~v~~~e  451 (545)
T PRK07768        433 CGRVKDVIIMAGRNIYPTD  451 (545)
T ss_pred             EccccceEEECCEecCHHH
Confidence            9999999999999999864

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.97  E-value=1.6e-29  Score=219.21  Aligned_cols=218  Identities=22%  Similarity=0.284  Sum_probs=180.4

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHH-HHHhcCC-cCCCCC
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGL-VKKFDL   86 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~-~l~~~~~-~~~~~l   86 (235)
                      ..+++++..+|++|..++ ..++.+++.|+++++.+  .+++..+++.++++++|.+.++|+.+. .+.+... .....+
T Consensus       217 ~~~~~~~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~  295 (533)
T PRK07798        217 GPGMRRFPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDL  295 (533)
T ss_pred             CCCceEEEecchhhhhhH-HHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCC
Confidence            456899999999999999 47889999999999998  789999999999999999999986553 3333322 234467


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCccc--ccCCCcEEEEEeCCCCccC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAG--ALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g--~p~~~~~~~~~d~~~~~~v  164 (235)
                      +++|.++.||+++++++.+++.+.+++..+++.||+||++.+........ .   ...|  .+.++..++++++ +++++
T Consensus       296 ~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~---~~~g~~~~~~~~~~~i~~~-~~~~~  370 (533)
T PRK07798        296 SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG-A---VHTGGPRFTIGPRTVVLDE-DGNPV  370 (533)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC-C---ccCCCCccCCCceEEEECC-CCCCC
Confidence            89999999999999999999999997789999999999976555332111 1   1223  6778899999995 67799


Q ss_pred             CCCCc--eEEEEEcCcccccccCCcccccccccC---CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQL--GEIWLRGPNMMRGYYNNEQATKLTIDK---KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~--Gel~v~~~~~~~~y~~~~~~~~~~~~~---~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|+.  |+++ +++.++.+|+++++.+...|..   .+||+|||+++++++|++++.||.||+|+.+|++|+|++
T Consensus       371 ~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~e  445 (533)
T PRK07798        371 EPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEE  445 (533)
T ss_pred             CCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHH
Confidence            99987  7665 5668999999999988877732   359999999999999999999999999999999999864

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=2.9e-29  Score=214.30  Aligned_cols=198  Identities=30%  Similarity=0.461  Sum_probs=166.2

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|+++..+|++|.+|+ ..++.++..|+++++.+.   ..+++.+.  +++.+..+|+++..++.....    ..
T Consensus       171 ~~~~~~~~~l~~~p~~h~~g~-~~~~~~l~~G~~v~~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~  240 (458)
T PRK09029        171 MPFTAQDSWLLSLPLFHVSGQ-GIVWRWLYAGATLVVRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE----PL  240 (458)
T ss_pred             CCCCccceEEEecCcHhhhhh-HHHHHHHhCCceEEeCCh---HHHHHHHh--hceeeecChHHHHHHHhcccc----CC
Confidence            445567999999999999998 577788999999999774   55667774  689999999999998876543    34


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.+++||+++++++.+.+.+.  +.++++.||+||++........    .....+|+|++++.+++.+          
T Consensus       241 ~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~----------  304 (458)
T PRK09029        241 SLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD----------  304 (458)
T ss_pred             cceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC----------
Confidence            79999999999999999998864  5899999999999875443221    1224589999999999876          


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                        |||+++++.++.||+++++.+.... .++||+|||+++++ +|++++.||+||+||++|++|+|.|
T Consensus       305 --gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~e  368 (458)
T PRK09029        305 --GEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEE  368 (458)
T ss_pred             --CEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHH
Confidence              8999999999999999888776443 68999999999999 9999999999999999999999864

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.97  E-value=6.8e-29  Score=209.44  Aligned_cols=192  Identities=20%  Similarity=0.242  Sum_probs=164.3

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +....+|+++..+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|.++++|+++..+.+....    ..
T Consensus       137 ~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~  212 (414)
T PRK08308        137 LNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TF  212 (414)
T ss_pred             hCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cc
Confidence            33456689999999999999988899999999999999888999999999999999999999999999876432    23


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      +++.++.+|+++++++.+.+++.  ..++++.||+||++++....  .  ......+|+|++++++++.+.       .+
T Consensus       213 ~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~--~--~~~~~~~G~p~~~~~~~~~~~-------~~  279 (414)
T PRK08308        213 QFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICP--D--MKSHLDLGNPLPHVSVSAGSD-------EN  279 (414)
T ss_pred             cccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecC--C--CCCCCccCccCCCeEEEEecC-------CC
Confidence            68899999999999999999887  36899999999998654321  1  233467899999999988752       36


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.||+++++                   .++||+|||+++++++|++++.||.||+||++|++|+|.|
T Consensus       280 ~~gel~v~~-------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~e  328 (414)
T PRK08308        280 APEEIVVKM-------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIE  328 (414)
T ss_pred             CCceEEEEc-------------------CCceEECCceEEECCCccEEEecccCCeEEECCEEECHHH
Confidence            679999975                   3579999999999999999999999999999999999864

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=99.96  E-value=5.4e-30  Score=210.99  Aligned_cols=222  Identities=29%  Similarity=0.401  Sum_probs=182.3

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCC----HHHH----HHHHHhccceEEeecHHHHHHHHhcCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD----LEMF----LRAIEKHRVTHIWVVPPLILALAKHGL   80 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~----~~~~----~~~l~~~~~t~~~~~p~~~~~l~~~~~   80 (235)
                      ...+.|+++.++|+-|.+-+ ..=+.++..|+++-..++.+    ...+    -..+...+||.+.++|.+|.++.+-..
T Consensus       275 ~lg~~D~yi~yLPLAHIlEl-~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl  353 (678)
T KOG1180|consen  275 ELGPKDRYIAYLPLAHILEL-TAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVL  353 (678)
T ss_pred             ccCCCceEEEechHHHHHHH-HHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHH
Confidence            34566999999999999999 56677888899998876532    1122    235678899999999998774433100


Q ss_pred             -------------------------c-CC----------------CCCCCceEEEecccCCcHHHHHHHHHhCCCCceec
Q 026632           81 -------------------------V-KK----------------FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQ  118 (235)
Q Consensus        81 -------------------------~-~~----------------~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~  118 (235)
                                               . ..                ..--++|.+++||+|++++..+.+.-.+. +++..
T Consensus       354 ~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C-~Pv~q  432 (678)
T KOG1180|consen  354 SKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC-CPVLQ  432 (678)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc-ccccc
Confidence                                     0 00                01138999999999999999999888775 79999


Q ss_pred             cccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC--ceEEEEEcCcccccccCCcccccccccC
Q 026632          119 GYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ--LGEIWLRGPNMMRGYYNNEQATKLTIDK  196 (235)
Q Consensus       119 ~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~--~Gel~v~~~~~~~~y~~~~~~~~~~~~~  196 (235)
                      .||.||++.-++.....  +...+.+|.|++-++++++|-+++.=-..+.  +|||+++|+.+..||+++|+.|++.|+.
T Consensus       433 GYGLTEtca~~tv~e~~--d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~  510 (678)
T KOG1180|consen  433 GYGLTETCAAATVLEPE--DFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTV  510 (678)
T ss_pred             cccccchhcccEecChh--hcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhcee
Confidence            99999999877776555  6667899999999999999977766555554  8999999999999999999999999987


Q ss_pred             -CC--eEecCceEEEcCCCcEEEEeccCCceEe-ccEEeecC
Q 026632          197 -KG--WVHTGDLGYFDGDGQLYVVDRIKELIKY-KGFQVTSN  234 (235)
Q Consensus       197 -~g--~~~TgDl~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  234 (235)
                       +|  ||+|||+|.+.++|++.|++|++|+||+ +|+-|+.+
T Consensus       511 ~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~  552 (678)
T KOG1180|consen  511 EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLG  552 (678)
T ss_pred             cCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehH
Confidence             88  9999999999999999999999999999 89999865

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=3.9e-28  Score=201.15  Aligned_cols=193  Identities=27%  Similarity=0.400  Sum_probs=160.9

Q ss_pred             CCcEEEEecChhHHHhHHHHHHHHhhcCcEEEE---ccCCCHHHHHHHHHhcc--ceEEeecHHHHHHHHhcCCcCCCCC
Q 026632           12 LDYVFLCVLPLFHVFGLAVITCGQLQKGSCIIL---MAKFDLEMFLRAIEKHR--VTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus        12 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~---~~~~~~~~~~~~l~~~~--~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      ..++++..+|++|.+|+ ..++.++..|++.++   ...+++..+++.+++++  .++...+|+.+..+....... ..+
T Consensus        73 ~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~~-~~~  150 (358)
T PRK07824         73 GPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAAT-AAL  150 (358)
T ss_pred             CCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcccc-CCc
Confidence            34788999999999998 567888888998887   34578999999999998  566677888887776654332 357


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.||+++++++.+.+.+.  ++++++.||+||++..+.            ..|.|++++++++.+         
T Consensus       151 ~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~---------  207 (358)
T PRK07824        151 AELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCV------------YDGVPLDGVRVRVED---------  207 (358)
T ss_pred             ccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcC------------cCceeCCCCEEEecC---------
Confidence            899999999999999999998864  599999999999875322            247889999988843         


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                         |||+++++.++.||+++++..  .+..+|||+|||++++ ++|.+++.||.||+|+++|++|+|++
T Consensus       208 ---Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~e  270 (358)
T PRK07824        208 ---GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQV  270 (358)
T ss_pred             ---CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHH
Confidence               899999999999999987643  3446789999999999 88999999999999999999999864

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.96  E-value=4.7e-28  Score=204.85  Aligned_cols=209  Identities=19%  Similarity=0.155  Sum_probs=161.6

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC--C
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD--L   86 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~--l   86 (235)
                      +..++|++++..++.+..+.+...+.+...|++++..+..+++.+++.|++++++++.++|+++..|++.....+..  .
T Consensus       115 g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~  194 (422)
T TIGR02155       115 GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQ  194 (422)
T ss_pred             CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCccc
Confidence            44567898887776655554455667788899998877778899999999999999999999999988765433322  3


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceecccccccccc-ccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG-IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~-~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      .++|.++++|+++++++.+.+.+.|+ +++++.||+||+++ .....+..   ...+.. .+.+.+.++++|++++++++
T Consensus       195 ~~lr~i~~~ge~l~~~~~~~i~~~~g-~~v~~~YG~tE~~~~~~~~~~~~---~~~g~~-~~~~~~~~eivd~~~g~~v~  269 (422)
T TIGR02155       195 TSLQVGIFGAEPWTNAMRKEIEARLG-MKATDIYGLSEVIGPGVAMECVE---TQDGLH-IWEDHFYPEIIDPHTGEVLP  269 (422)
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhC-CceEecccchhhcCCceeecccc---cCCCce-EecCeeEEEEECCCCCCCCC
Confidence            58999999999999999999999997 99999999999853 22222211   111111 12245778899988999999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCC-C-----cEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD-G-----QLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~-g-----~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +|+.|||++++.+            ...+ +.+||+|||+++++++ |     .+++.||.||+|+++|++|+|.+
T Consensus       270 ~Ge~Gelvvt~~~------------~~~~-p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~e  332 (422)
T TIGR02155       270 DGEEGELVFTTLT------------KEAL-PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQ  332 (422)
T ss_pred             CCCeeEEEEecCC------------cccc-ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHH
Confidence            9999999998732            2333 6789999999999765 3     46899999999999999999853

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=99.95  E-value=1.4e-26  Score=191.53  Aligned_cols=228  Identities=22%  Similarity=0.248  Sum_probs=181.6

Q ss_pred             eeccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      +.++..++|+++.++|++|.+|.+..+..++..|+|+|+.++|+...+|+...++++|++..+--+.+.|+..+......
T Consensus       276 ~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er  355 (649)
T KOG1179|consen  276 YVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER  355 (649)
T ss_pred             HHhCCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999998887777


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceecccccccccccccc-ccCCCCCCCCCcccccCCCcEEEEEeCCCCc--
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-ENSFAGSRNIGSAGALAPGVEALIVSVDTQK--  162 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~-~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~--  162 (235)
                      -+++|..+  |.-+.+++++.|.++|+..+|.+.||+||...-... +...++-.......+-+.-+++.-.|+++++  
T Consensus       356 ~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~i  433 (649)
T KOG1179|consen  356 QHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPI  433 (649)
T ss_pred             CceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecCccccccchhhhhhhccceEEEEecCCCCcee
Confidence            78888887  566999999999999998889999999998753221 1111111111112222233445555666666  


Q ss_pred             --------cCCCCCceEEEEE--c--C-cccccccCCcccccccc------cCCCeEecCceEEEcCCCcEEEEeccCCc
Q 026632          163 --------PLPPNQLGEIWLR--G--P-NMMRGYYNNEQATKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKEL  223 (235)
Q Consensus       163 --------~v~~g~~Gel~v~--~--~-~~~~~y~~~~~~~~~~~------~~~g~~~TgDl~~~~~~g~~~~~GR~~d~  223 (235)
                              +|++||.|.++-+  .  | ..|.||.++...+++..      ..|-||+|||+-..|+.|++|+.+|..|+
T Consensus       434 Rd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDT  513 (649)
T KOG1179|consen  434 RDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDT  513 (649)
T ss_pred             ecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCc
Confidence                    5689999977543  2  2 33889998766665444      23559999999999999999999999999


Q ss_pred             eEeccEEeecCC
Q 026632          224 IKYKGFQVTSNW  235 (235)
Q Consensus       224 i~~~G~~v~p~~  235 (235)
                      +...|++|+.+|
T Consensus       514 FRWKGENVsTtE  525 (649)
T KOG1179|consen  514 FRWKGENVSTTE  525 (649)
T ss_pred             eeecCCcccHHH
Confidence            999999999765

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.92  E-value=1.4e-23  Score=178.32  Aligned_cols=207  Identities=19%  Similarity=0.075  Sum_probs=153.3

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC--CC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF--DL   86 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~--~l   86 (235)
                      +..++|+++.+.|+.+..+.....+.+...|++++....  ....++.+++++++++.++|+.+..+++..+..+.  ..
T Consensus       126 G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~  203 (445)
T TIGR03335       126 GFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAE  203 (445)
T ss_pred             CCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCccc
Confidence            445679999999988877765566677888888765443  35678899999999999999998888765443332  23


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      .++|.++.+|+++++++.+.+.+.|+ +++++.||+||++. +. .+..    ..+ ...+.+.+.++++|++++.++++
T Consensus       204 ~~lr~ii~gGE~l~~~~r~~ie~~~g-~~v~~~YG~TE~~~-~~-~c~~----~~g-~h~~~d~~~vEIvDp~~~~~vp~  275 (445)
T TIGR03335       204 SSIRRLVVGGESFADESRNYVEELWG-CEVYNTYGSTEGTM-CG-ECQA----VAG-LHVPEDLVHLDVYDPRHQRFLPD  275 (445)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHhC-CcEEecCChhhhhh-eE-EecC----CCC-ccccCCceEEEEEcCCCCCCCcC
Confidence            68999999999999999999999996 99999999999863 22 2211    001 11233557899999988899999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEc-CCC--------cEEEEeccCCceEeccEEeecC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFD-GDG--------QLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~-~~g--------~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      |+.|||++++-.-..        ....+ +--.|+|||++++. .+.        ++...||.||+++++|.+|+|.
T Consensus       276 Ge~GELvvT~L~~~~--------~r~~~-PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~  343 (445)
T TIGR03335       276 GECGRIVLTTLLKPG--------ERCGS-LLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRV  343 (445)
T ss_pred             CCceEEEEEecCCCC--------ccCCc-eEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHH
Confidence            999999998732100        00011 34469999999963 221        2445799999999999999985

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.91  E-value=1.3e-23  Score=174.99  Aligned_cols=174  Identities=20%  Similarity=0.220  Sum_probs=137.3

Q ss_pred             cEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceEEE
Q 026632           14 YVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG   93 (235)
Q Consensus        14 d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~i~   93 (235)
                      |++++++|++|.+|+...++.++..|+++++.+++++..+++.++.+  |+++++|++++.+.+..    ..++++|. +
T Consensus       139 dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i  211 (386)
T TIGR02372       139 RRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-V  211 (386)
T ss_pred             CeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-E
Confidence            68999999999999877888899999999998888999888888754  78999999999987653    24567775 6


Q ss_pred             ecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEE
Q 026632           94 SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIW  173 (235)
Q Consensus        94 ~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~  173 (235)
                      ++|+++++++++.+++. +...+++.||+||+++++....       ....++|.|++++.+ +  ++..          
T Consensus       212 ~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~-------~~~~~~~~p~~~~~~-~--~~~~----------  270 (386)
T TIGR02372       212 SSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA-------PDDPFRLLPDLACFA-D--TLSS----------  270 (386)
T ss_pred             ecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC-------CCCCcccCCCccccC-C--CccC----------
Confidence            78999999999999886 4357999999999988655321       123456777665432 1  1100          


Q ss_pred             EEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          174 LRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       174 v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                       .+                   +..|++|||+++++++|++++.||+||+|+++|++|+|++
T Consensus       271 -~g-------------------~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~e  312 (386)
T TIGR02372       271 -AG-------------------LARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGH  312 (386)
T ss_pred             -CC-------------------ccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHH
Confidence             01                   1236899999999999999999999999999999999864

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.90  E-value=9.7e-23  Score=167.41  Aligned_cols=207  Identities=20%  Similarity=0.149  Sum_probs=162.9

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC--CCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--FDL   86 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--~~l   86 (235)
                      +...+|++..+..+.-..|.....+.+-..|++++...+-+.+..++++..+++|++.++|+++..|++..+..+  ..-
T Consensus       130 g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~  209 (438)
T COG1541         130 GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDK  209 (438)
T ss_pred             cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhh
Confidence            345567777777644434433555666667888777777789999999999999999999999999999887764  344


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      .++|.++.|+|++++++++.+.+.|+ +++++.||+||..+.++..|......+     -.-+...++++||++++.+++
T Consensus       210 ~~lk~~i~gaE~~see~R~~ie~~~g-~~~~diYGltE~~g~g~~eC~~~~glh-----i~eD~~~~Ei~dP~t~e~l~d  283 (438)
T COG1541         210 LSLKKGIFGAEPWSEEMRKVIENRFG-CKAFDIYGLTEGFGPGAGECTERNGLH-----IWEDHFIFEIVDPETGEQLPD  283 (438)
T ss_pred             cceeEEEEecccCCHHHHHHHHHHhC-CceeeccccccccCCcccccccccCCC-----cchhhceeeeecCCcCccCCC
Confidence            68999999999999999999999997 999999999999877543333311111     123667899999999999999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCc---------EEEEeccCCceEeccEEeecC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQ---------LYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~---------~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      |+.|||++++-+            +..+ +--.|+|||+..+.++.+         ..+.||.||++.+.|.+|+|.
T Consensus       284 ge~GelV~T~L~------------~~~~-PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~  347 (438)
T COG1541         284 GERGELVITTLT------------KEGM-PLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPS  347 (438)
T ss_pred             CCeeEEEEEecc------------ccCc-ceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHH
Confidence            999999998722            2222 455799999999976322         679999999999999999984

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.89  E-value=1.4e-21  Score=173.54  Aligned_cols=226  Identities=22%  Similarity=0.261  Sum_probs=188.3

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+....+|+++...++.+.... ..++.++..|+++++.++   .++..+.+.+.++++|++..+|+.+..+........
T Consensus       401 ~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~  479 (642)
T COG1020         401 RFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPD  479 (642)
T ss_pred             hcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcc
Confidence            3556677899999999888887 689999999999999875   489999999999999999999999998887632221


Q ss_pred             --CCCCCceEEEecccCCcHHHHHHHHHhCC-CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCC
Q 026632           84 --FDLSSLKLVGSGAAPLGKELMEECAKNVP-SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT  160 (235)
Q Consensus        84 --~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~  160 (235)
                        ...+.+|.+..||+.++.++.+.+..... ...+.+.||.||+...................|+|.++..+.++| +.
T Consensus       480 ~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild-~~  558 (642)
T COG1020         480 LISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILD-QG  558 (642)
T ss_pred             ccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEEC-CC
Confidence              22335999999999999999999888764 368999999999665444332221111145789999999999999 68


Q ss_pred             CccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          161 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       161 ~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      +++++.|..||+++.|..+..||+++|+.+.+.|..+.+|+|||+++..++|.+.+.||.|+.+|++|++|.+.
T Consensus       559 ~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~  632 (642)
T COG1020         559 LRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELG  632 (642)
T ss_pred             CCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeEEEeccccceeEeceEecCcH
Confidence            99999999999999999999999999999999995445899999999999999999999999999999998543

>PTZ00297 pantothenate kinase; Provisional

Probab=99.70  E-value=1.9e-16  Score=148.50  Aligned_cols=185  Identities=15%  Similarity=0.094  Sum_probs=134.5

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcC--------
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK--------   82 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~--------   82 (235)
                      .++|++++++|++|.++. ...+.++..|+++..   +++..+++.+++++||+++++|.++..+......+        
T Consensus       643 ~~~D~~Ls~LPLaHI~er-~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~  718 (1452)
T PTZ00297        643 FKKHLMVHFTPFAMLFNR-VFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVY  718 (1452)
T ss_pred             CCCCEEEEechHHHHHHH-HHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHH
Confidence            456999999999999996 567788999999864   47899999999999999999999888554321100        


Q ss_pred             ------------------CC----------------CCCCceEEEeccc--CCcHHHHHHHHHhCCCCceeccccccccc
Q 026632           83 ------------------KF----------------DLSSLKLVGSGAA--PLGKELMEECAKNVPSATVIQGYGLTETS  126 (235)
Q Consensus        83 ------------------~~----------------~l~~lr~i~~~G~--~~~~~~~~~~~~~~~~~~i~~~yG~tE~g  126 (235)
                                        ..                .-.++|.+++||.  +++..+.     .  .+++...||+||+.
T Consensus       719 ~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~  791 (1452)
T PTZ00297        719 SWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVF  791 (1452)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh-----C--CceEEEecceEEee
Confidence                              00                0036888888873  4443332     2  36788899999953


Q ss_pred             cccccccCCCCCCCCCcccccCCCcEEEEEeC-CCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCce
Q 026632          127 GIATMENSFAGSRNIGSAGALAPGVEALIVSV-DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDL  205 (235)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~-~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl  205 (235)
                      .   ..+..  ..  ...|.|+|++++++.+. +.+.   .+..|||++++       +++|+.|.+.  .+||+     
T Consensus       792 ~---~~~~~--~~--~~~G~PlpgvEvKI~~~~E~~~---~~~~GEIlvr~-------~kdpe~T~e~--~~gW~-----  847 (1452)
T PTZ00297        792 F---LPSEG--VF--CVDGTPAPSLQVDLEPFDEPSD---GAGIGQLVLAK-------KGEPRRTLPI--AAQWK-----  847 (1452)
T ss_pred             e---ecCCC--Cc--ccCCeecCceEEEEcccccccC---CCCCCeEEEEE-------CCChHHHHHh--hCcCc-----
Confidence            2   22222  12  22399999999999874 2222   23469999964       5788888874  35664     


Q ss_pred             EEEcCCCcEEEEeccCCceEe-ccEEeecC
Q 026632          206 GYFDGDGQLYVVDRIKELIKY-KGFQVTSN  234 (235)
Q Consensus       206 ~~~~~~g~~~~~GR~~d~i~~-~G~~v~p~  234 (235)
                          ++|+++|+||+||+||+ +|++|+|+
T Consensus       848 ----~dG~L~IidRkKdlikls~GEyVaP~  873 (1452)
T PTZ00297        848 ----RDRTLRLLGPPLGILLPVAYEYVIAA  873 (1452)
T ss_pred             ----cCCeEEEEeccccceECCCCcEEcHH
Confidence                68999999999999999 89999986

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.60  E-value=1.6e-14  Score=121.29  Aligned_cols=151  Identities=17%  Similarity=0.072  Sum_probs=107.8

Q ss_pred             CHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccc
Q 026632           49 DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI  128 (235)
Q Consensus        49 ~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~  128 (235)
                      +.+.+++.|.+++|+++.+.|+.+..|++..+..... ..+|.++++||.++++..+.+.+.|+ +++++.||+|| |.+
T Consensus       175 ~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg-~~V~~~YG~tE-g~l  251 (430)
T TIGR02304       175 PFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFK-NTVHQIYQATE-GFL  251 (430)
T ss_pred             CHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhC-CCeeEccCCch-hhe
Confidence            5678999999999999999999999999876554433 47999999999999999999999997 99999999999 654


Q ss_pred             cccccCCCCCCCCCcccccC-CCcEEE--EEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCce
Q 026632          129 ATMENSFAGSRNIGSAGALA-PGVEAL--IVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDL  205 (235)
Q Consensus       129 ~~~~~~~~~~~~~~~~g~p~-~~~~~~--~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl  205 (235)
                      +.-+ ..      +. .+.. ..+.++  ++|++ ++       ++.++|+-.            ...+ +--.|+|||+
T Consensus       252 a~eC-~~------g~-lHl~ed~~~vE~~ivD~~-~~-------~~~ViT~L~------------n~~~-PlIRYrtGD~  302 (430)
T TIGR02304       252 ASTC-RC------GT-LHLNEDLVHIEKQYLDEH-KR-------FVPIITDFT------------RTTQ-PIVRYRLNDI  302 (430)
T ss_pred             EEec-CC------CC-EEEccccEEEEeeEECCC-Cc-------eEEEEecCC------------Cccc-eEEeeeCCCE
Confidence            4333 21      11 1222 223444  78853 32       345666511            1111 4446999999


Q ss_pred             EEEcCCC--------cE-EEEeccCCceEe---ccEEe
Q 026632          206 GYFDGDG--------QL-YVVDRIKELIKY---KGFQV  231 (235)
Q Consensus       206 ~~~~~~g--------~~-~~~GR~~d~i~~---~G~~v  231 (235)
                      +...++.        .+ .+.||.+|++++   +|..+
T Consensus       303 ~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v  340 (430)
T TIGR02304       303 LVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQ  340 (430)
T ss_pred             EEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeE
Confidence            8885442        24 488999999985   45544

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.06  E-value=3.8e-09  Score=94.59  Aligned_cols=225  Identities=17%  Similarity=0.202  Sum_probs=153.9

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      ...+..-++.+++.+...|+....+...++|...++.++    .++..++..++++++.-++.+-+.+..+.+....+-.
T Consensus       980 ~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~e 1059 (1363)
T KOG3628|consen  980 QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVE 1059 (1363)
T ss_pred             ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccc
Confidence            345566677788888888888999999999999888875    3799999999999988888877777766654333222


Q ss_pred             CCC------CceEEEecccCCcHHHHHHHHHhCCCC-----ceeccccccccccccccccCCCC----------------
Q 026632           85 DLS------SLKLVGSGAAPLGKELMEECAKNVPSA-----TVIQGYGLTETSGIATMENSFAG----------------  137 (235)
Q Consensus        85 ~l~------~lr~i~~~G~~~~~~~~~~~~~~~~~~-----~i~~~yG~tE~g~~~~~~~~~~~----------------  137 (235)
                      +++      +-..++..-++...++.+.|.+.|...     .+.-.|++-=- +.++.+...+.                
T Consensus      1060 nl~~~gnn~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~N-p~Ic~r~~sg~~Pt~~y~D~raLR~gr 1138 (1363)
T KOG3628|consen 1060 NLSKRGNNTSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVN-PFICLRSYSGPEPTTVYLDARALREGR 1138 (1363)
T ss_pred             hhhhhhcccccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCC-hHhhhccccCCCCcceeechhhhhccc
Confidence            221      113455567788888888888876321     23333433211 11111100000                


Q ss_pred             --------C--CCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcc-cccccc---------cCC
Q 026632          138 --------S--RNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ-ATKLTI---------DKK  197 (235)
Q Consensus       138 --------~--~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~-~~~~~~---------~~~  197 (235)
                              .  ...-..|...+..++.++.|++-.++.+|+.||||+.+.+-+.+|+...+ .....|         ...
T Consensus      1139 V~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~ 1218 (1363)
T KOG3628|consen 1139 VRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGK 1218 (1363)
T ss_pred             eeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccc
Confidence                    0  00113477888999999999999999999999999999888887775321 111111         134


Q ss_pred             CeEecCceEEEcC------C----CcEEEEeccCCceEeccEEeecC
Q 026632          198 GWVHTGDLGYFDG------D----GQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       198 g~~~TgDl~~~~~------~----g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      .|-||||+|++..      .    ..+|+.|-.++.+.++|.+-+|.
T Consensus      1219 sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~ 1265 (1363)
T KOG3628|consen 1219 SYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPS 1265 (1363)
T ss_pred             cceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcc
Confidence            5999999999842      1    35999999999999999988774

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=99.05  E-value=1.9e-08  Score=83.15  Aligned_cols=164  Identities=22%  Similarity=0.286  Sum_probs=109.7

Q ss_pred             HhhcCcEEEEcc-CCCHHHHHHHH----HhccceEEeecHHHHHHHHhcCCcCCC--CCC-CceEEEecc------cCCc
Q 026632           35 QLQKGSCIILMA-KFDLEMFLRAI----EKHRVTHIWVVPPLILALAKHGLVKKF--DLS-SLKLVGSGA------APLG  100 (235)
Q Consensus        35 ~l~~G~~~v~~~-~~~~~~~~~~l----~~~~~t~~~~~p~~~~~l~~~~~~~~~--~l~-~lr~i~~~G------~~~~  100 (235)
                      .+..++.-.+.. .+|.+.+.+.+    .+.++..+++.|.++..++...+..+.  .++ ..+.+..||      +.++
T Consensus       161 ~~~~~~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~  240 (365)
T PF04443_consen  161 ELFFGSRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVS  240 (365)
T ss_pred             hcccCceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccC
Confidence            344555644432 36777766655    456688899999987777665444433  333 566777776      5675


Q ss_pred             -HHHHHHHHHhCCC---CceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEc
Q 026632          101 -KELMEECAKNVPS---ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG  176 (235)
Q Consensus       101 -~~~~~~~~~~~~~---~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~  176 (235)
                       ++..+.+.+.|+.   .++++.|||||.....+.+..   ...     ...++  +.++|+++.++++.|+.|-|.+-+
T Consensus       241 r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~---~~~-----~~p~w--V~iRDp~tl~~~~~Ge~Gli~vid  310 (365)
T PF04443_consen  241 REEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH---GHF-----HVPPW--VIIRDPETLEPLPPGETGLIQVID  310 (365)
T ss_pred             HHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC---Ccc-----cCCCe--EEEECCCCCcCCCCCCeeEEEEEc
Confidence             5777777777873   479999999998766554311   111     12244  667799999999999999999877


Q ss_pred             CcccccccCCcccccccccCCCeEecCceEEEcCC--------CcEEEEeccCC
Q 026632          177 PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD--------GQLYVVDRIKE  222 (235)
Q Consensus       177 ~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~--------g~~~~~GR~~d  222 (235)
                      +....              ..+..-|.|+|.+..+        .++.+.||.+.
T Consensus       311 l~~~s--------------~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  311 LANTS--------------YPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             ccccC--------------CCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC
Confidence            54221              2234789999987543        36999999763

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.90  E-value=1.8e-08  Score=91.66  Aligned_cols=201  Identities=15%  Similarity=0.075  Sum_probs=120.5

Q ss_pred             HHHhhcCcEEEEccCC---CHHHHHHHHHhccceEEeecHHHHHHHHhcCCc----------CCC---CCCCceEEEecc
Q 026632           33 CGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV----------KKF---DLSSLKLVGSGA   96 (235)
Q Consensus        33 ~~~l~~G~~~v~~~~~---~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~----------~~~---~l~~lr~i~~~G   96 (235)
                      ...|.+|+.+..+...   ++..+.+.++++.++....+|++.++++.....          ...   ..+.+|....+|
T Consensus       257 ~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~  336 (1032)
T KOG1178|consen  257 GALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGG  336 (1032)
T ss_pred             hhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecC
Confidence            3444555545544332   378999999999999999999997776654322          111   234899999999


Q ss_pred             cCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCC--cccccCC-------CcEEEEEeCCCCccCCCC
Q 026632           97 APLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIG--SAGALAP-------GVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~--~~g~p~~-------~~~~~~~d~~~~~~v~~g  167 (235)
                      ++...++...+.+.+...-...-|+++|.............+.-..  .++.+-.       ....+... ..+.+.+.+
T Consensus       337 ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~  415 (1032)
T KOG1178|consen  337 EPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLY-RAGGEGEGG  415 (1032)
T ss_pred             CccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeee-ccCcccCCc
Confidence            9999999887766654233334588887776544322111111000  0000000       01122222 234444433


Q ss_pred             CceEE----EEEcCcccccccCCcccccccc-----cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEI----WLRGPNMMRGYYNNEQATKLTI-----DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel----~v~~~~~~~~y~~~~~~~~~~~-----~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.+..    +-.++....|| ..++.+...+     ..+..|+|||+|+..++|-+.+.||.|+.||.+|.|+...|
T Consensus       416 v~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~e  491 (1032)
T KOG1178|consen  416 VGKGCLGAEQNLSSWVVDGY-STPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGE  491 (1032)
T ss_pred             ccceeecccccccceeeccc-cchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhh
Confidence            33222    22234444442 3333322222     24568999999999899999999999999999999997653

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=98.73  E-value=1.1e-07  Score=85.66  Aligned_cols=218  Identities=19%  Similarity=0.194  Sum_probs=148.3

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHH----hcCC---
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALA----KHGL---   80 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~----~~~~---   80 (235)
                      ...+.++.........|++..++-++++|.|.+-.++   ..+..+.+.+.++|.+++..=-.-+.+..    +.++   
T Consensus       308 ~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~  387 (1363)
T KOG3628|consen  308 PSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATL  387 (1363)
T ss_pred             CcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCccccc
Confidence            3448888888899999999999999999999999986   57889999999999998655422222111    1111   


Q ss_pred             ----cCCCCCCCceEEEecccCCcHHHHHHHHHhC----CCCc-----------------eeccccccccccccccccCC
Q 026632           81 ----VKKFDLSSLKLVGSGAAPLGKELMEECAKNV----PSAT-----------------VIQGYGLTETSGIATMENSF  135 (235)
Q Consensus        81 ----~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~----~~~~-----------------i~~~yG~tE~g~~~~~~~~~  135 (235)
                          .+-.+++++|..+..=..+..+..+-..+.|    +...                 ...+=+++|++......+..
T Consensus       388 s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~  467 (1363)
T KOG3628|consen  388 SFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQ  467 (1363)
T ss_pred             chhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCccc
Confidence                1223678999998888888877665555544    2111                 11223345666555543331


Q ss_pred             CCCC----------------------------CCCcccccCC-CcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCC
Q 026632          136 AGSR----------------------------NIGSAGALAP-GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN  186 (235)
Q Consensus       136 ~~~~----------------------------~~~~~g~p~~-~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~  186 (235)
                      ....                            ....++...| ++.+.++++++.++|+++++|||||.+++....|+.-
T Consensus       468 ~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al  547 (1363)
T KOG3628|consen  468 MADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYAL  547 (1363)
T ss_pred             ccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceeec
Confidence            1000                            0123444333 4678888888999999999999999999999999987


Q ss_pred             ccccccccc------------CCCeEecCceEEEcCCCcEEEEeccCCceEecc
Q 026632          187 EQATKLTID------------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKG  228 (235)
Q Consensus       187 ~~~~~~~~~------------~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G  228 (235)
                      +..+...|.            ..-+.|||-+|++++++.+++.++.|....+.|
T Consensus       548 ~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~  601 (1363)
T KOG3628|consen  548 DKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSG  601 (1363)
T ss_pred             cccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhhhhh
Confidence            777666661            123789999999987766666666665555444

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=98.42  E-value=4.5e-07  Score=70.48  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccce
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVT   63 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t   63 (235)
                      .....++|+++ .+|++|.+|+...++.++..|+++++.++|+++.+++.++++|+|
T Consensus       172 ~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       172 AAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             hcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            34567789999 999999999988999999999999999999999999999999986

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.13  E-value=2.4e-06  Score=70.72  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=30.6

Q ss_pred             CCCeEecCceEEE-cCCCcEEEEeccCCceEecc---EEeecC
Q 026632          196 KKGWVHTGDLGYF-DGDGQLYVVDRIKELIKYKG---FQVTSN  234 (235)
Q Consensus       196 ~~g~~~TgDl~~~-~~~g~~~~~GR~~d~i~~~G---~~v~p~  234 (235)
                      .+|||+|||+|++ |++|++++.||.|     +|   ++|+|+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~  244 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA  244 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH
Confidence            7899999999998 6999999999998     77   788873

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.02  E-value=3.1e-05  Score=67.60  Aligned_cols=124  Identities=19%  Similarity=0.255  Sum_probs=69.6

Q ss_pred             CCCceE-EEecccCCcHHHHHHHHHhCCCCcee-ccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCC---
Q 026632           86 LSSLKL-VGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT---  160 (235)
Q Consensus        86 l~~lr~-i~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~---  160 (235)
                      -++++. .+++|..+ ....+.+++.+|++.+. ..|++||.. ++....    .......-.|-.+ ..+.++.++   
T Consensus       266 WP~L~~v~~~~~g~~-~~y~~~l~~~~g~~~~~~~~y~ASEg~-i~i~~~----~~~~~~~l~~~~~-ffEFip~~~~~~  338 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSM-APYAPKLREYFGGVPIQSKGYGASEGF-IGIPLD----PEDPGYVLAPDSG-FFEFIPVDEDEQ  338 (528)
T ss_dssp             STT--EEEEE-SGGG-GGGHHHHHHHHTTS-EEE-EEEETTEE-EEEES-----CCC--EEE-TTSS-EEEEEE-STT--
T ss_pred             CCCCcEEEEEcCCCh-HHHHHHHHHHcCCCceeeccccccceE-EEEecC----CCCCceEeecCCe-EEEEEeccCCcc
Confidence            468884 44444333 45566777778765544 799999964 333221    1111222223333 566666543   


Q ss_pred             -----C-----ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcC--C--CcEEEEeccCCceEe
Q 026632          161 -----Q-----KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG--D--GQLYVVDRIKELIKY  226 (235)
Q Consensus       161 -----~-----~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~--~--g~~~~~GR~~d~i~~  226 (235)
                           +     ..++.|+..||++++..   |.|              .|+.||+++...  +  ..+.|.||.+.++++
T Consensus       339 ~~~~~~~~l~~~ele~G~~YelviTt~~---GLy--------------RY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l  401 (528)
T PF03321_consen  339 NPSEQPKTLLLHELEVGEEYELVITTNS---GLY--------------RYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSL  401 (528)
T ss_dssp             -----SSSEEGGG--TT-EEEEEEESTT---S-S--------------SEEECEEEEEEEEETTEEEEEEEEETTEEE-S
T ss_pred             cccCCCceecHHHhcCCCeEEEEEeccc---cee--------------eeecCCEEEEeeccCCCcEEEEeccCCceeec
Confidence                 2     24578899999998743   333              299999999842  2  379999999999999


Q ss_pred             ccEEeec
Q 026632          227 KGFQVTS  233 (235)
Q Consensus       227 ~G~~v~p  233 (235)
                      .|+|++.
T Consensus       402 ~gEkl~e  408 (528)
T PF03321_consen  402 FGEKLSE  408 (528)
T ss_dssp             SS--EEH
T ss_pred             ceeecCH
Confidence            9999875

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.98  E-value=0.00029  Score=62.08  Aligned_cols=126  Identities=10%  Similarity=0.048  Sum_probs=77.8

Q ss_pred             CCC---ceEEEecccCCcHHHHHHHHHhCCCCc-eeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCC-
Q 026632           86 LSS---LKLVGSGAAPLGKELMEECAKNVPSAT-VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDT-  160 (235)
Q Consensus        86 l~~---lr~i~~~G~~~~~~~~~~~~~~~~~~~-i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~-  160 (235)
                      -++   +..+..||-.   ...+.++..+|+.. +...|++||+..-+-..+.+. .......-.| .+...+.++.++ 
T Consensus       301 WPnl~~i~~~~~G~~~---~Y~~~l~~~~g~~~~~~~~Y~ASEg~~gi~~~~~~~-p~~~~~~l~~-~~~ffEFiP~~~~  375 (597)
T PLN02249        301 WPNTKYLDVIVTGAMA---QYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCK-PSEVSYTIMP-NMAYFEFLPHNHD  375 (597)
T ss_pred             CCCCCeEEEEecCChH---HHHHHHHHHcCCCccccccccccceEEEeecCCCCC-CCCcceEecC-CcEEEEeeecccC
Confidence            356   6667766644   55566766776554 558999999653332221110 1111111112 255566664221 


Q ss_pred             C------------ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEc----CCCcEEEEeccCCce
Q 026632          161 Q------------KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFD----GDGQLYVVDRIKELI  224 (235)
Q Consensus       161 ~------------~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~----~~g~~~~~GR~~d~i  224 (235)
                      +            ..|+.|+..+++|++.+   |.|              .|+.||..+..    ...++.|+||.+.++
T Consensus       376 ~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~---GLy--------------RY~iGDvVrvtgf~~~~P~i~F~gR~~~~l  438 (597)
T PLN02249        376 GDGALDETSLVELADVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFKFIRRKNVLL  438 (597)
T ss_pred             CcccCCCCcEecHHHcCCCCeEEEEEEccc---cee--------------EeecCCEEEEeeccCCCcEEEEEccCCcce
Confidence            1            13578888999998632   222              39999999984    345799999999999


Q ss_pred             EeccEEeec
Q 026632          225 KYKGFQVTS  233 (235)
Q Consensus       225 ~~~G~~v~p  233 (235)
                      ++.|+|++.
T Consensus       439 s~~GEKl~e  447 (597)
T PLN02249        439 SIESDKTDE  447 (597)
T ss_pred             ecccccCCH
Confidence            999999874

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.77  E-value=0.00053  Score=60.18  Aligned_cols=128  Identities=12%  Similarity=0.068  Sum_probs=78.1

Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCcee-ccccccccccccccccCCCCCCCCCcccccCCC-cEEEEEeCCCC---
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAGALAPG-VEALIVSVDTQ---  161 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~~~~~~d~~~~---  161 (235)
                      +++|.|.+=-..-.......++..+++..++ -.|++||+-.-+-..+.+. +.  ...+...|+ .-.+.++.+++   
T Consensus       293 P~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~~ginl~p~~~-p~--~~sy~L~p~~~yFEFip~~~~~~~  369 (606)
T PLN02247        293 PRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECYFGINLKPLSD-PS--DVSYTLLPNMAYFEFLPVDKNNGE  369 (606)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceEEEeccCcCCC-cc--CCceeecCCcEEEEEeecCCCccc
Confidence            5677644332223455556777677777766 5999999754433332211 11  111222222 22455532221   


Q ss_pred             --------------------------ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEE----cCC
Q 026632          162 --------------------------KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF----DGD  211 (235)
Q Consensus       162 --------------------------~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~----~~~  211 (235)
                                                ..++.|+.-|++|++-+   |.+              .||.||+.+.    +..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt~~---GLY--------------RYrlGDvv~V~GF~n~~  432 (606)
T PLN02247        370 VIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTTFT---GLY--------------RYRVGDILMVTGFYNNA  432 (606)
T ss_pred             ccccccccccccccccccccCceecHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeeecCCC
Confidence                                      13578888999998622   222              3999998887    456


Q ss_pred             CcEEEEeccCCceEeccEEeecC
Q 026632          212 GQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       212 g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      ..+.|++|.+.+..+.|+|++.+
T Consensus       433 P~~~Fv~R~~~vlsi~gEK~tE~  455 (606)
T PLN02247        433 PQFRFVQRRNVVLSIDTDKTNEE  455 (606)
T ss_pred             ceEEEEecCCceeecccccCCHH
Confidence            78999999999999999998643

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=97.67  E-value=0.00097  Score=58.56  Aligned_cols=129  Identities=12%  Similarity=0.054  Sum_probs=76.9

Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCcee-ccccccccccccccccCCCCCCCCCcccccCCC-cEEEEEeCCC---
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAGALAPG-VEALIVSVDT---  160 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~~~~~~d~~~---  160 (235)
                      -+++|.|-+=-..-.......++..+++..+. -.|++||+-.-+...+.+. +..  ..+...|+ .-.+.++.+.   
T Consensus       303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~-p~~--~sy~L~p~~~yFEFip~~~~~~  379 (612)
T PLN02620        303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCK-PSE--VSYTLIPTMAYFEFLPVHRNNG  379 (612)
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceEEEeccCCCCC-ccc--ceeeecCCcEEEEEeeccCccc
Confidence            35666643332223345556666667777765 7999999754443333211 111  11222222 2234443211   


Q ss_pred             ----------------Cc-----cCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEE----cCCCcEE
Q 026632          161 ----------------QK-----PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYF----DGDGQLY  215 (235)
Q Consensus       161 ----------------~~-----~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~----~~~g~~~  215 (235)
                                      ++     .++.|+.-|++|++-+   |.+              .|+.||+.+.    +....+.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~---GLy--------------RYrlGDvv~V~Gf~n~~P~~~  442 (612)
T PLN02620        380 VTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYA---GLY--------------RYRVGDVLRVAGFKNKAPQFS  442 (612)
T ss_pred             ccccccccccccccccCccccHHHccCCCeEEEEEEecC---ceE--------------EEecCCEEEEeeecCCCceEE
Confidence                            11     2578888999998622   222              3999998887    4557899


Q ss_pred             EEeccCCceEeccEEeecC
Q 026632          216 VVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       216 ~~GR~~d~i~~~G~~v~p~  234 (235)
                      |++|.+.+..+.|+|++.+
T Consensus       443 Fv~R~~~~lsi~gEK~tE~  461 (612)
T PLN02620        443 FICRKNVVLSIDSDKTDEV  461 (612)
T ss_pred             EEeecCceeecccccCCHH
Confidence            9999999999999998653

>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family

Probab=86.59  E-value=11  Score=28.61  Aligned_cols=90  Identities=12%  Similarity=0.148  Sum_probs=55.9

Q ss_pred             cEEEEecCh--hHHHhHHHHHHHHhhcCcEEEEcc-CCCHHHHHHHHHhccceEEeecHHH------HHHHHhcCCcCCC
Q 026632           14 YVFLCVLPL--FHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPL------ILALAKHGLVKKF   84 (235)
Q Consensus        14 d~~l~~~p~--~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~l~~~~~t~~~~~p~~------~~~l~~~~~~~~~   84 (235)
                      .+++..++.  .|..|....-...-..|-.++... ...++++.+.+.+.+++.+..+-++      +..+.+..+... 
T Consensus        85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~-  163 (197)
T TIGR02370        85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEG-  163 (197)
T ss_pred             CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcC-
Confidence            455666655  688888544444446677777554 4678999999999999987776542      233333322221 


Q ss_pred             CCCCceEEEecccCCcHHHHH
Q 026632           85 DLSSLKLVGSGAAPLGKELME  105 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~  105 (235)
                      ..++++ ++.||.++.++..+
T Consensus       164 ~~~~v~-i~vGG~~~~~~~~~  183 (197)
T TIGR02370       164 YRDSVK-FMVGGAPVTQDWAD  183 (197)
T ss_pred             CCCCCE-EEEEChhcCHHHHH
Confidence            122344 77788888765433

This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=84.46  E-value=8.4  Score=27.35  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             hHHHhHHHHHHHHhhcCcEEEEccC-CCHHHHHHHHHhccceEEeecH
Q 026632           23 FHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVP   69 (235)
Q Consensus        23 ~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~p   69 (235)
                      .|..|........-..|-.++.... ..++++.+.+.+++++.+..+-
T Consensus        15 ~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~   62 (137)
T PRK02261         15 CHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSS   62 (137)
T ss_pred             hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence            4777885444444467777777754 5789999999999999877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		5e-49
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		2e-47
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		3e-47
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-47
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-47
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		7e-47
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		2e-46
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-46
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-46
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-46
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-27
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-22
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		5e-21
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-19
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-19
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		3e-19
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		5e-18
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		6e-17
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		1e-16
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		5e-16
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		2e-15
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		2e-14
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		4e-13
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		5e-13
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		6e-13
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		5e-12
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		7e-08
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		7e-08
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		3e-07
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		3e-07
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		6e-07
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		2e-06
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		2e-06
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		7e-06
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		8e-06
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		2e-05
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		3e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		4e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		4e-05
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		6e-05
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		6e-05
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-04
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		5e-04
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		5e-04
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		5e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		5e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		5e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		5e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		5e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		6e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  190 bits (483), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 147/223 (65%), Gaps = 5/223 (2%)
Query: 13  DYVFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPL 71
           D V LCVLP+FH++ L +++ CG L+ G+ I++M KF++ + L  I++ +VT   +VPP+
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCG-LRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPI 328
Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +LA+AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M
Sbjct: 329 VLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM 388
Query: 132 ENSFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ 188
              FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+GY NN  
Sbjct: 389 SLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPA 448
Query: 189 ATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           AT  TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct: 449 ATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 141/217 (64%), Gaps = 7/217 (3%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T++ +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK  I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 134/219 (61%), Gaps = 2/219 (0%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  I+LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 268 DTAILTVIPFHHGFGM-FTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLF 326
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  LV K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+  A + 
Sbjct: 327 SFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTS-AIII 385
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                    G+ G + P   A IV +DT K L  NQ GE+ ++GP +M+GY NN +AT  
Sbjct: 386 TPRGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSA 445
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            IDK GW+H+GD+ Y+D DG  ++VDR+K LIKYKG+QV
Sbjct: 446 LIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQV 484

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 7/217 (3%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK  I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  184 bits (467), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/217 (43%), Positives = 140/217 (64%), Gaps = 7/217 (3%)
Query: 17  LCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA 76
           L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   L 
Sbjct: 240 LTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILN 298
Query: 77  KHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSG--IATMENS 134
           K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+   I T E  
Sbjct: 299 KSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE-- 356
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK  I
Sbjct: 357 --GDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414
Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  183 bits (465), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 104/222 (46%), Positives = 148/222 (66%), Gaps = 5/222 (2%)
Query: 15  VFLCVLPLFHVFGL-AVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V LCVLP+FH++ L +++ CG L+ G+ I++M KF++   L  IEK++V+   VVPP+++
Sbjct: 225 VILCVLPMFHIYALNSIMLCG-LRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMM 283
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
           ++AK   + K DLSSL+++ SG APLGKEL +      P A + QGYG+TE   +  M  
Sbjct: 284 SIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCL 343
Query: 134 SFAGSR---NIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
           +FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+GY N+ +AT
Sbjct: 344 AFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEAT 403
Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 232
             TIDK+GW+HTGD+GY D D +L++VDR+KELIKYKGFQV 
Sbjct: 404 SRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVA 445

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 134/219 (61%), Gaps = 3/219 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             LAK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 298 SFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI- 356
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
            +  G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT  
Sbjct: 357 -TPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNA 415
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG QV
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQV 454

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 133/219 (60%), Gaps = 3/219 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
               G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT  
Sbjct: 353 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  181 bits (460), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 133/219 (60%), Gaps = 3/219 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 234 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 292
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 293 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
               G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT  
Sbjct: 353 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 410
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 411 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 133/219 (60%), Gaps = 3/219 (1%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D   L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L 
Sbjct: 239 DTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 297
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
              AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    + 
Sbjct: 298 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 357
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
               G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT  
Sbjct: 358 PE--GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNA 415
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            IDK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 416 LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 454

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 118/221 (53%), Gaps = 17/221 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++   Q Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLMLTLQ-QAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +       +  L+SL+ V     P   E +E      P+AT    +G +ETSG++T    
Sbjct: 262 ILDQAAPAQ--LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLST---- 312
Query: 135 FAGSRN-IGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
           FA  R+   SAG   P     +  VD + +PLPP ++GEI LRGP + +GY+NN  AT+ 
Sbjct: 313 FAPYRDRPKSAGR--PLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQH 370
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQV 231
              + GW HTGD+G FD DG L+   R   KELIK  G  V
Sbjct: 371 AF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 104/219 (47%), Gaps = 5/219 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L      I + KFD +  L      R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   + K      +L  SG+APL  +   E +     A V++ YG TET+      
Sbjct: 254 TRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHA-VLERYGXTETN--XNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
           N + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +GY+   + TK 
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKS 370
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                G+  TGDLG  D  G ++++ R K+L+   GF V
Sbjct: 371 EFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 18/225 (8%)
Query: 21  PLFHV--FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAK- 77
           P FH   FGL  +    +  G+  ++   F+ E     IEK++ T  W VPP +  L   
Sbjct: 229 PXFHSAEFGLVNLX---VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNT 285
Query: 78  -HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETSGIAT 130
                K +D S LK+  +GA P+   L+E+  K      N P     Q +G TE     T
Sbjct: 286 LESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 131 MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
                   ++  + G     +E  ++S++  + L   + GEI +RGPN+ +GY+  E+  
Sbjct: 346 TNPPLRLDKST-TQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN 404
Query: 191 KLT--IDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           +     D+KG  +  TGD+G+ D +G L+  DR+KE+IKYKG+ +
Sbjct: 405 QECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 5/219 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  GY+   + T  
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 5/219 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  GY+   + T  
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 5/219 (2%)
Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           D V +  LP++H  GL V +   L     +I +  FD +  L  +   R T +  VP   
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFY 253
Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
             L +   +       ++L  SG+APL  +   E +     A V++ YG+TET+      
Sbjct: 254 TRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHA-VLERYGMTETN--MNTS 310
Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
           N + G R  G+ G   PGV A +   +T   LP   +G I + GPN+  GY+   + T  
Sbjct: 311 NPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXS 370
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                G+  TGDLG  D  G ++++ R  +L+   GF V
Sbjct: 371 EFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNV 409

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 8/217 (3%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 214 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
            +     + D    +   +G AP+ + L++   AKN+    V+QGY LTE+ G  T+  S
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 329
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
               R  GSAG      +  +   D    +  +  GE+ ++   +++ Y+N  +AT+   
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAF 387
Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           D  GW  TGD+G  D +G LY+ DR+K++I   G  V
Sbjct: 388 DN-GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 18/232 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + LA
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLA 280
Query: 75  LAKHGLVKKFDLSSLK--LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA +       L +L+  +VG  AAP  + L+    +      V QGYGLTETS +    
Sbjct: 281 LADYLESTGHRLKTLRRLVVGGSAAP--RSLIARFERM--GVEVRQGYGLTETSPVVVQN 336
Query: 133 ------NSFAGSRNI---GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPNMMR 181
                  S +    +      G   P V  L V+ +  +P+P +   LGE+ L+GP +  
Sbjct: 337 FVKSHLESLSEEEKLTLKAKTGLPIPLVR-LRVADEEGRPVPKDGKALGEVQLKGPWITG 395
Query: 182 GYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
           GYY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  ++S
Sbjct: 396 GYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 447

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 14/225 (6%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELNDG-ATMLFGVPTMYHR 256
Query: 75  LAK-----HGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIA 129
           +A+       L K   L+  +L+ SG+A L     E  A       VI+ YG+TET  + 
Sbjct: 257 IAETLPADPELAKA--LAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTET--LM 311
Query: 130 TMENSFAGSRNIGSAGALAPGVEALIVSVDTQK--PLPPNQLGEIWLRGPNMMRGYYNNE 187
                  G    G+ G   PGVE  +V  D      L    +GEI +RGPN+   Y N  
Sbjct: 312 NTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRP 371
Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDR-IKELIKYKGFQV 231
            AT     + G+  TGD+   D DG + +V R   +LIK  G+++
Sbjct: 372 DATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 26/220 (11%)
Query: 11  ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           + D  +L VLP++H+ GL+V+    ++ G  + ++ KF+ E  L  I+  R+THI +VP 
Sbjct: 202 DRDTNWLSVLPIYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQ 260
Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSG-- 127
            +  L + GL + ++L  + L   G A L   ++E   + N+P   +   +G+TET    
Sbjct: 261 TLNWLMQQGLHEPYNLQKILL---GGAKLSATMIETALQYNLP---IYNSFGMTETCSQF 314
Query: 128 -IATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRGPNMMRGYYN 185
             AT E   A    +G   A          +VD +   P  +  GE+ ++G N+M GY  
Sbjct: 315 LTATPEMLHARPDTVGMPSA----------NVDVKIKNPNKEGHGELMIKGANVMNGYL- 363
Query: 186 NEQATKLT-IDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
               T LT   + G+ +TGD+   D +G + + DR K+LI
Sbjct: 364 --YPTDLTGTFENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 8/204 (3%)
Query: 16  FLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
            L  LP+FHV  L  +    + +G  +I M +FD       I + RV     VP ++  +
Sbjct: 200 LLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 258
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELME-ECAKNVPSATVIQGYGLTETSGIATMENS 134
            +     + D    +   +G AP+ + L++   AKN+    V+QGY LTE+ G  T+  S
Sbjct: 259 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNI---EVVQGYALTESCGGGTLLLS 315
Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
               R  GSAG      +  +   D    +  +  GE+ ++   +++ Y+N  +AT+   
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDDGV--IREHGEGEVVIKSDILLKEYWNRPEATRDAF 373
Query: 195 DKKGWVHTGDLGYFDGDGQLYVVD 218
           D  GW  TGD+G  D +G LY+ D
Sbjct: 374 DN-GWFRTGDIGEIDDEGYLYIKD 396

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 112/254 (44%), Gaps = 43/254 (16%)
Query: 18  CV--LPLFHVFGLAVITCGQLQKGSCIILMAKFDLE----MFLRAIEKHRVTHIWVVPPL 71
           CV  LP +H  GL       +     +  +   D       +L+ I K+R T + V PP 
Sbjct: 220 CVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPF 278
Query: 72  ILALAKHGLVKK----FDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGL 122
              L +  + +K     DLS  ++ G GA P+  E + + A+     N  + T    YGL
Sbjct: 279 GYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGL 338
Query: 123 TETSGIATMENSFAG------SRNI--GSAGALAPGVEALIVS--VDTQKPLPPNQL--- 169
            E +   +  +  +G       R+I      A+APG E   VS  V+  K LP + +   
Sbjct: 339 AENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIR 398
Query: 170 ------------GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVV 217
                       G I + GP++  GY+ + Q ++  I   GW+ TGDLGY   DG LYV 
Sbjct: 399 NEAGXPVAERVVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGYLYVT 456
Query: 218 DRIKELIKYKGFQV 231
            RIK+LI  +G  +
Sbjct: 457 GRIKDLIIIRGRNI 470

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 11/223 (4%)
Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++ 
Sbjct: 235 LLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIM 294
Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP---SATVIQGYGLTETSGIATM 131
             +     K  + SLKL+  G    G    E  A+ VP   +  + Q +G+ E  G+   
Sbjct: 295 WLEKAAQYKDQIQSLKLLQVG----GASFPESLARQVPEVLNCKLQQVFGMAE--GLVNY 348
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
                    I +        +  I  VD Q + +P  ++G +  RGP    GYY + +  
Sbjct: 349 TRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHN 408
Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS 233
               D+  + ++GDL     DG L VV RIK+ I   G ++ S
Sbjct: 409 SQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIAS 451

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 17/228 (7%)
Query: 16  FLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + +
Sbjct: 228 YLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-S 286
Query: 75  LAKHGLVK---KFDLSSLKLVGSGAAPLGKELMEECAKNVPS---ATVIQGYGLTE-TSG 127
           L    L++   +  L+SLKL+  G A L   L    A  +P+     + Q +G+ E    
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATL----AARIPAEIGCQLQQVFGMAEGLVN 342
Query: 128 IATMENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 186
              +++S    + I + G  + P  E  +   +   PLP  ++G +  RGP   RGYY +
Sbjct: 343 YTRLDDS--AEKIIHTQGYPMCPDDEVWVADAEG-NPLPQGEVGRLMTRGPYTFRGYYKS 399
Query: 187 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
            Q      D  G+  +GDL   D +G + V  R K+ I   G ++ + 
Sbjct: 400 PQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 3/221 (1%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E      K V   T+ Q +G+ E     T  +
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGMAEGLVNYTRLD 343
Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
                        ++P  E+ +   D  + + P + G +  RGP  +RGYY  E+    +
Sbjct: 344 DPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAAS 402
Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
             + G+  TGD+     DG + V  R K+ I   G +V + 
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 92/222 (41%), Gaps = 5/222 (2%)
Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP  H + L+     G L  G  ++L      +     IE+ +VT   +VPPL  
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAX 284
Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E      K V   T+ Q +G  E  G+     
Sbjct: 285 VWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRV-KAVFGCTLQQVFGXAE--GLVNYTR 341
Query: 134 SFAGSRNI-GSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                  I  + G      +   V  D  + + P + G +  RGP  +RGYY  E+    
Sbjct: 342 LDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAA 401
Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN 234
           +  + G+  TGD+     DG + V  R K+ I   G +V + 
Sbjct: 402 SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 11/226 (4%)
Query: 10  GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLE--MFLRAIEKHRVTHIWV 67
            E D VF     LF  +GL       L  G+  ILMA+      +F R +E HR T  + 
Sbjct: 223 AENDVVF-SAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVE-HRPTVFYG 280
Query: 68  VPPLIL-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETS 126
           VP L    L    L  + D++ +++  S    L +E+ E    +     ++ G G TE  
Sbjct: 281 VPTLYANMLVSPNLPARADVA-IRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEML 338
Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 186
            I    ++ AG+   G+ G   PG E + +  +    +P  ++G+++++GP+    Y+NN
Sbjct: 339 HI--FLSNRAGAVEYGTTGRPVPGYE-IELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNN 395
Query: 187 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT 232
            + ++ T   + W+ +GD      +G      R  +++K  G  V+
Sbjct: 396 REKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVS 440

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 11/101 (10%)
Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT- 190
           +++  GS  + S+G   P  E  I+  DT  P   +Q+GEIW++  ++ +GY+N  + T 
Sbjct: 364 DDNSPGSYKLVSSGN--PIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETR 421
Query: 191 -----KLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELI 224
                K+  D++   ++ TGDLG+   + +LYV  RIK+LI
Sbjct: 422 HAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLI 461

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 34  GQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I        +  ++ S+LK 
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDLSHYNFSTLKY 345
Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGV 151
                 PL  E+     +      +++G+G TET  + T+          GS G   PG 
Sbjct: 346 AVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTET--VVTIATFPWMEPKPGSIGKPTPGY 402
Query: 152 EALIVSVDTQKPLPPNQLGEIWLRGPNMMRG-------YYNNEQATKLTIDKKGWVHTGD 204
           +  ++  D  +     + GEI +   N M G       +Y  +          G+ HTGD
Sbjct: 403 KIELMDRDG-RLCEVGEEGEIVI---NTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGD 458
Query: 205 LGYFDGDGQLYVVDRIKELIKYKGFQV 231
           + + D DG L+ V R  ++IK  G++V
Sbjct: 459 MAWMDEDGYLWFVGRADDIIKTSGYKV 485

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 100 GKELMEECAKNV----PSATVIQGYGLTE-TSGIATMENSFAGSRNIGS--AGALAPGVE 152
           G+EL    A+ +    PSA +I  YG TE T  ++ +E +     N      G   P   
Sbjct: 273 GEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSP 332
Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK---LTIDKKGWVHTGDLGYFD 209
             I+  D  K L   + GEI + GP + +GY NN + T     T   +   HTGD+G   
Sbjct: 333 TYIIDEDG-KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391
Query: 210 GDGQLYVVDRIKELIKYKGFQV 231
            D  L    R+   IKY G+++
Sbjct: 392 EDNILLYGGRLDFQIKYAGYRI 413

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 16/217 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P   V  GYG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NGYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNNE 187
               G+        +APG   E  IV +     + +   + GE+ +   +    GY N  
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 370 QATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 109 KNVPSATVIQGYGLTE-TSGIATME--NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP 165
           +  P A +   YG TE T  + ++E  N           G   P +   I+  + Q PLP
Sbjct: 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQ-PLP 340
Query: 166 PNQLGEIWLRGPNMMRGYYNNEQAT-KLTIDKKG-WVH-TGDLGYFDGDGQLYVVDRIKE 222
             + GEI + GP++ RGY    + T K     +G W + TGD G+   DGQ++   R+  
Sbjct: 341 EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDF 399
Query: 223 LIKYKGFQV 231
            IK  G+++
Sbjct: 400 QIKLHGYRM 408

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P   V   YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNNE 187
               G+        +APG   E  IV +     + +   + GE+ +   +    GY N  
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 370 QATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P   V   YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNNE 187
               G+        +APG   E  IV +     + +   + GE+ +   +    GY N  
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 370 QATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P   V   YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNNE 187
               G+        +APG   E  IV +     + +   + GE+ +   +    GY N  
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           QAT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 370 QATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVPDMI 405

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 16/217 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P   V   YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMR 316
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNNE 187
               G+        +APG   E  IV +     + +   + GE+ +   +    GY N  
Sbjct: 317 QPKTGTE-------MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           +AT   + + GW  T D+  +  +G + ++ R+ ++I
Sbjct: 370 EATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMI 405

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/247 (20%), Positives = 106/247 (42%), Gaps = 14/247 (5%)
Query: 1   MVTMDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM----AKFDLEMFLRA 56
           ++TM        + VF     +  + G   +  G L  G   ++     A  +   +   
Sbjct: 292 LLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI 351
Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--P 112
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +   
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKN 411
Query: 113 SATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL-G 170
              ++  Y  TE+ S + T           GSA     G++A+++  +T + L  +   G
Sbjct: 412 EIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEG 471
Query: 171 EIWLRG--PNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKY 226
            + ++   P+  R  + N      T      G+  TGD    D DG ++++ R+ +++  
Sbjct: 472 VLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV 531
Query: 227 KGFQVTS 233
            G ++++
Sbjct: 532 SGHRLST 538

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 39  GSC--IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG-SG 95
           G+C  + L+ KFD  + L+ +  + +  +   P +   L +       DLSS K      
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------DLSSYKFPHLQN 326
Query: 96  AAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
              +G+ L+ E  +N  + T   + + YG TET G+  M +     +  G  G  A   +
Sbjct: 327 CVTVGESLLPETLENWRAQTGLDIRESYGQTET-GLTCMVSKTMKIKP-GYMGTAASCYD 384
Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGP-----NMMRGYYNNEQATKLTIDKKGWVHTGDLGY 207
             I+  D    LPP   G+I +R        +  GY +N   T   I    W+  GD G 
Sbjct: 385 VQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 208 FDGDGQLYVVDRIKELIKYKGFQV 231
            D DG    + R  ++I   G+++
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRI 466

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 39  GSC--IILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVG-SG 95
           G+C  + L+ KFD  + L+ +  + +  +   P +   L +       DLSS K      
Sbjct: 273 GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------DLSSYKFPHLQN 326
Query: 96  AAPLGKELMEECAKNVPSAT---VIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
              +G+ L+ E  +N  + T   + + YG TET G+  M +     +  G  G  A   +
Sbjct: 327 CVTVGESLLPETLENWRAQTGLDIRESYGQTET-GLTCMVSKTMKIKP-GYMGTAASCYD 384
Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGP-----NMMRGYYNNEQATKLTIDKKGWVHTGDLGY 207
             I+  D    LPP   G+I +R        +  GY +N   T   I    W+  GD G 
Sbjct: 385 VQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGI 442
Query: 208 FDGDGQLYVVDRIKELIKYKGFQV 231
            D DG    + R  ++I   G+++
Sbjct: 443 KDEDGYFQFMGRADDIINSSGYRI 466

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 97/231 (41%), Gaps = 24/231 (10%)
Query: 22  LFHV--FGLAVITC-GQLQKGSCIILM---AKFDLEMFLRAIEKHRVTHIWVVPPLILAL 75
           LFH   F  +V    G    G+ ++++   A    E +L  I    VT I   P   LAL
Sbjct: 221 LFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLAL 280
Query: 76  AKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK--NVPSATVIQGYGLTETSGIAT--- 130
            +  +    D+S L+ V  G   L   ++   AK   +    ++ GYG+TET+   T   
Sbjct: 281 TEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEE 340
Query: 131 -MENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQA 189
             E   A   +I   G   P     +V  D  + + P + GE+WL G  +  GY    + 
Sbjct: 341 ITEAYLAQDASI--IGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYLRRPEL 397
Query: 190 T-----KLTIDKKG----WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           T     ++T +K G    +  TGDL     DG+     R    IK +G+++
Sbjct: 398 TAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRI 448

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Query: 94  SGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSA---GALAPG 150
           +G  P     + +  ++ P+  +  GYG  E+ G  T     AG  + G+A   G    G
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS-GTALPIGVPLAG 391
Query: 151 VEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQ--ATKLTIDK------KGWVHT 202
             A ++  D  KP     LGE+++ G  +  GY +     A +   D       +    T
Sbjct: 392 KRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRT 450
Query: 203 GDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           GDL     DG L  V R  + +K +GF+V
Sbjct: 451 GDLARRRADGVLEYVGRADDQVKIRGFRV 479

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 17/231 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQ----LGEIWLRGPNMM 180
           G   M     G+  + +  A  P  GV+  +V  +        +    + + W      +
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477
Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            G +   + T  +  K  +  +GD    D DG  ++  R+ +++   G ++
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRL 527

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 16/217 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L + PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257
Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A     ++E   +++P   V   YG TE        
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKV-NIYGTTEAX------ 310
Query: 133 NSFAGSRNIGSAGALAPGV--EALIVSV--DTQKPLPPNQLGEIWLRGPN-MMRGYYNNE 187
           NS    R   +    APG   E  IV +     + +   + GE+ +   +    GY N  
Sbjct: 311 NSLY-XRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQP 369
Query: 188 QATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           QAT   + + GW  T D+  +  +G + ++ R+ + I
Sbjct: 370 QATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXI 405

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 17/231 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQ----LGEIWLRGPNMM 180
           G   M     G+  + +  A  P  GV+  +V  +        +    + + W      +
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477
Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            G +   + T  +  K  +  +GD    D DG  ++  R+ +++   G ++
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRL 527

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 155 IVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK-----------GWVHTG 203
           IV  DT    P   +GEIW+ G N+  GY+     ++ T   K            W+ TG
Sbjct: 406 IVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
Query: 204 DLGYFDGDGQLYVVDR 219
           D G+   DG+++++ R
Sbjct: 466 DSGFVT-DGKMFIIGR 480

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 17/231 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQ----LGEIWLRGPNMM 180
           G   M     G+  + +  A  P  GV+  +V  +        +    + + W      +
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477
Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            G +   + T  +  K  +  +GD    D DG  ++  R+ +++   G ++
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRL 527

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 17/231 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQ----LGEIWLRGPNMM 180
           G   M     G+  + +  A  P  GV+  +V  +        +    + + W      +
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477
Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            G +   + T  +  K  +  +GD    D DG  ++  R+ +++   G ++
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRL 527

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 17/231 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQ----LGEIWLRGPNMM 180
           G   M     G+  + +  A  P  GV+  +V  +        +    + + W      +
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477
Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            G +   + T  +  K  +  +GD    D DG  ++  R+ +++   G ++
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRL 527

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 17/231 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQ----LGEIWLRGPNMM 180
           G   M     G+  + +  A  P  GV+  +V  +        +    + + W      +
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477
Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            G +   + T  +  K  +  +GD    D DG  ++  R+ +++   G ++
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRL 527

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 17/231 (7%)
Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 360 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 419
Query: 127 GIATMENSFAGSRNIGSAGALAP--GVEALIVSVDTQKPLPPNQ----LGEIWLRGPNMM 180
           G   M     G+  + +  A  P  GV+  +V  +        +    + + W      +
Sbjct: 420 GF--MITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477
Query: 181 RGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            G +   + T  +  K  +  +GD    D DG  ++  R+ +++   G ++
Sbjct: 478 FGDHERFEQTYFSTFKNMYF-SGDGARRDEDGYYWITGRVDDVLNVSGHRL 527

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-122
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-121
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-120
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-120
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-106
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-82
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	3e-79
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	2e-75
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	6e-75
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	4e-74
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-72
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-70
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-70
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	4e-70
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-65
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	7e-42
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-40
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	4e-40
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-38
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-35
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	9e-31
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	5e-24
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	7e-15
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-14
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	5e-14
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-13
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-12
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-10
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	1e-10
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	2e-10
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	7e-05
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	9e-05
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  356 bits (917), Expect = e-122
 Identities = 103/220 (46%), Positives = 144/220 (65%), Gaps = 3/220 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++   L  IEK++V+   VVPP++++
Sbjct: 225 VILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK   + K DLSSL+++ SG APLGKEL +      P A + QGYG+TE   +  M  +
Sbjct: 285 IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344

Query: 135 FA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
           FA        G+ G +    E  IV  +T   LP NQ GEI +RG  +M+GY N+ +AT 
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATS 404

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TIDK+GW+HTGD+GY D D +L++VDR+KELIKYKGFQV
Sbjct: 405 RTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQV 444

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  353 bits (908), Expect = e-121
 Identities = 92/217 (42%), Positives = 139/217 (64%), Gaps = 3/217 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++++ KFD E FL+ ++ ++ T + +VP L   
Sbjct: 238 AVLTVVPFHHGFGM-FTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L K  L+ K+DLS+L  + SG APL KE+ E  A+      V QGYGLTET+    +  +
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII--T 354

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             G    G++G + P  +A ++ +DT+K L PN+ GE+ ++GP +M+GY NN +ATK  I
Sbjct: 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELI 414

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           D++GW+HTGD+GY+D +   ++VDR+K LIKYKG+QV
Sbjct: 415 DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQV 451

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  351 bits (904), Expect = e-120
 Identities = 94/217 (43%), Positives = 133/217 (61%), Gaps = 3/217 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 236 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 294

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    +  +
Sbjct: 295 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI--T 352

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT   I
Sbjct: 353 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALI 412

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           DK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 413 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  363 bits (933), Expect = e-120
 Identities = 104/220 (47%), Positives = 142/220 (64%), Gaps = 3/220 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V LCVLP+FH++ L  I    L+ G+ I++M KF++ + L  I++ +VT   +VPP++LA
Sbjct: 272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLA 331

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +AK    +K+DLSS+++V SGAAPLGKEL +      P+A + QGYG+TE   +  M   
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLG 391

Query: 135 FA---GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATK 191
           FA        G+ G +    E  IV  DT   L  NQ GEI +RG  +M+GY NN  AT 
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATA 451

Query: 192 LTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            TIDK GW+HTGD+G  D D +L++VDR+KELIKYKGFQV
Sbjct: 452 ETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQV 491

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  315 bits (810), Expect = e-106
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 14/229 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             +  +P+FH     ++    +  G+  ++M  F+ EM    IEK++ T  W VPP +  
Sbjct: 223 TIVGCMPMFHSAEFGLVNLM-VTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNV 281

Query: 75  LAK--HGLVKKFDLSSLKLVGSGAAPLGKELMEECAK------NVPSATVIQGYGLTETS 126
           L        K +D S LK+  +GA P+   L+E+  K      N P     Q +G+TE  
Sbjct: 282 LVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNN 186
            + T  N         + G     +E  ++S++  + L   + GEI +RGPN+ +GY+  
Sbjct: 342 PMVTT-NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKR 400

Query: 187 EQATKLTI----DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           E+  +         + +  TGD+G+ D +G L+  DR+KE+IKYKG+ +
Sbjct: 401 EKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTI 449

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  253 bits (648), Expect = 3e-82
 Identities = 68/217 (31%), Positives = 107/217 (49%), Gaps = 5/217 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LP++H  GL V +   L     +I + KFD +  L  +   R T +  VP     
Sbjct: 198 VLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTR 255

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           L +   + K     ++L  SG+APL  +   E +       V++ YG+TET+   +  N 
Sbjct: 256 LLQSPRLTKETTGHMRLFISGSAPLLADTHREWSA-KTGHAVLERYGMTETNMNTS--NP 312

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
           + G R  G+ G   PGV A +   +T K LP   +G I ++GPN+ +GY+   + TK   
Sbjct: 313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF 372

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
              G+  TGDLG  D  G ++++ R K+L+   GF V
Sbjct: 373 RDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNV 409

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  245 bits (629), Expect = 3e-79
 Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 6/217 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L  LP+FHV  L  +      +G  +I M +FD       I + RV     VP ++  
Sbjct: 213 RLLLPLPMFHVAALTTVIFS-AMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 271

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           + +     + D    +   +G AP+ + L++  A    +  V+QGY LTE+ G  T+  S
Sbjct: 272 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA--KNIEVVQGYALTESCGGGTLLLS 329

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
               R  GSAG      +  +   D        + GE+ ++   +++ Y+N  +AT+   
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGV-IREHGE-GEVVIKSDILLKEYWNRPEATRDAF 387

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           D  GW  TGD+G  D +G LY+ DR+K++I   G  V
Sbjct: 388 D-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  235 bits (603), Expect = 2e-75
 Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 16/218 (7%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
            +L VLP++H+ GL+V+    + +G  + ++ KF+ E  L  I+  R+THI +VP  +  
Sbjct: 206 NWLSVLPIYHISGLSVLLRA-VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNW 264

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEEC-AKNVPSATVIQGYGLTETSGIATMEN 133
           L + G     +  +L+ +  G A L   ++E     N+P   +   +G+TET        
Sbjct: 265 LMQQG---LHEPYNLQKILLGGAKLSATMIETALQYNLP---IYNSFGMTETCSQFLTAT 318

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
                    + G  +  V+  I + +          GE+ ++G N+M GY      T   
Sbjct: 319 PEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTDLTGTF 372

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            +  G+ +TGD+   D +G + + DR K+LI   G  +
Sbjct: 373 EN--GYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENI 408

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  234 bits (599), Expect = 6e-75
 Identities = 80/219 (36%), Positives = 109/219 (49%), Gaps = 13/219 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L +LPLFHV GL ++     Q G   ++ AKFD     R IE H+VT +    P++  
Sbjct: 203 VNLGMLPLFHVTGLGLML-TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGN 261

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
           +          L+SL+ V     P   E  E      P+AT    +G +ETSG++T    
Sbjct: 262 ILDQ--AAPAQLASLRAVTGLDTPETIERFEAT---CPNATFWATFGQSETSGLSTF--- 313

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
                   SAG         +V  + + PLPP ++GEI LRGP + +GY+NN  AT+   
Sbjct: 314 APYRDRPKSAGRPLFWRTVAVVDAEDR-PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF 372

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQV 231
            + GW HTGD+G FD DG L+   R   KELIK  G  V
Sbjct: 373 -RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENV 410

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  232 bits (593), Expect = 4e-74
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 12/222 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGLV--KKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P    +  YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMR 316

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDT--QKPLPPNQLGEIWLRGPN-MMRGYYNNEQA 189
                    G+  A     E  IV +     + +   + GE+ +   +    GY N  QA
Sbjct: 317 -----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371

Query: 190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           T   +   GW  T D+  +  +G + ++ R+ ++I   G  +
Sbjct: 372 TAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  227 bits (580), Expect = 4e-72
 Identities = 68/223 (30%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V +  LPLFHV GL +   G L++G  +  + +F  E   R +     T ++ VP +   
Sbjct: 198 VLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELN-DGATMLFGVPTMYHR 256

Query: 75  LAKHGLVKKF---DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
           +A+           L+  +L+ SG+A L     E  A       VI+ YG+TET    + 
Sbjct: 257 IAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA-ATGRRVIERYGMTETLMNTS- 314

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQ--KPLPPNQLGEIWLRGPNMMRGYYNNEQA 189
                G    G+ G   PGVE  +V  D      L    +GEI +RGPN+   Y N   A
Sbjct: 315 -VRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDA 373

Query: 190 TKLTIDKKGWVHTGDLGYFDGDGQLYVVDR-IKELIKYKGFQV 231
           T     + G+  TGD+   D DG + +V R   +LIK  G+++
Sbjct: 374 TAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  224 bits (573), Expect = 1e-70
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 5/212 (2%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V+L  LP+ H + L+     G L  G  ++L      +     IE+ +VT   +VPPL +
Sbjct: 225 VYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAM 284

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
                   ++ DLSSL+++  G A    E            T+ Q +G+ E     T   
Sbjct: 285 VWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTR-L 342

Query: 134 SFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
                  + + G  ++P  E+ +     +  + P + G +  RGP  +RGYY  E+    
Sbjct: 343 DDPEEIIVNTQGKPMSPYDESRVWDDHDR-DVKPGETGHLLTRGPYTIRGYYKAEEHNAA 401

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
           +  + G+  TGD+     DG + V  R K+ I
Sbjct: 402 SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQI 433

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  225 bits (577), Expect = 1e-70
 Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 7/214 (3%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
            +LC +P  H + ++   + G    G  ++L A     +    IEKH+V    +VPP + 
Sbjct: 227 RYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVS 286

Query: 74  ALAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              +  +    +  L+SLKL+  G A L   L       +    + Q +G+ E     T 
Sbjct: 287 LWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYTR 345

Query: 132 ENSFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
               +  + I + G  + P  E  +   +   PLP  ++G +  RGP   RGYY + Q  
Sbjct: 346 -LDDSAEKIIHTQGYPMCPDDEVWVADAEGN-PLPQGEVGRLMTRGPYTFRGYYKSPQHN 403

Query: 191 KLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
               D  G+  +GDL   D +G + V  R K+ I
Sbjct: 404 ASAFDANGFYCSGDLISIDPEGYITVQGREKDQI 437

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  223 bits (570), Expect = 4e-70
 Identities = 54/212 (25%), Positives = 91/212 (42%), Gaps = 5/212 (2%)

Query: 15  VFLCVLPLFHVFGLAVI-TCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLIL 73
             LC LP  H F L+     G L  G C+++    +       I++H+V    +VP  ++
Sbjct: 234 RLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
              +     K  + SLKL+  G A   + L  +    V +  + Q +G+ E     T   
Sbjct: 294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQ-VPEVLNCKLQQVFGMAEGLVNYT-RL 351

Query: 134 SFAGSRNIGSAG-ALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
             +  +   + G  ++   E  IV    +  +P  ++G +  RGP    GYY + +    
Sbjct: 352 DDSDEQIFTTQGRPISSDDEIKIVDEQYR-EVPEGEIGMLATRGPYTFCGYYQSPEHNSQ 410

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELI 224
             D+  + ++GDL     DG L VV RIK+ I
Sbjct: 411 VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  209 bits (535), Expect = 3e-65
 Identities = 49/218 (22%), Positives = 91/218 (41%), Gaps = 6/218 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMA-KFDLEMFLRAIEKHRVTHIWVVPPLIL 73
           V      LF  +GL       L  G+  ILMA +   +     + +HR T  + VP L  
Sbjct: 227 VVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYA 286

Query: 74  ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN 133
            +     +      ++++  S    L +E+ E          ++ G G TE   I    +
Sbjct: 287 NMLVSPNLPARADVAIRICTSAGEALPREIGERF-TAHFGCEILDGIGSTEMLHIFL--S 343

Query: 134 SFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLT 193
           + AG+   G+ G   PG E  +   +    +P  ++G+++++GP+    Y+NN + ++ T
Sbjct: 344 NRAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRAT 402

Query: 194 IDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                W+ +GD      +G      R  +++K  G  V
Sbjct: 403 F-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYV 439

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  148 bits (375), Expect = 7e-42
 Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 24/227 (10%)

Query: 15  VFLCVLPLFHV----FGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPP 70
           V L V+P+FHV       A    G       ++   + D    +   +   VT    VP 
Sbjct: 221 VVLPVVPMFHVNAWCLPYAATLVG----AKQVLPGPRLDPASLVELFDGEGVTFTAGVPT 276

Query: 71  LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-NVPSATVIQGYGLTETSGIA 129
           + LALA +       L +L+ +  G +   + L+    +  V    V QGYGLTETS + 
Sbjct: 277 VWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVE---VRQGYGLTETSPVV 333

Query: 130 TMENSFAGSRNI---------GSAGALAPGVEALIVSVDTQKPLPPN--QLGEIWLRGPN 178
                 +   ++            G   P V   +   +  +P+P +   LGE+ L+GP 
Sbjct: 334 VQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPW 392

Query: 179 MMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
           +  GYY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK
Sbjct: 393 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK 439

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  143 bits (364), Expect = 4e-40
 Identities = 59/249 (23%), Positives = 96/249 (38%), Gaps = 46/249 (18%)

Query: 20  LPLFHVFGLAVITCGQLQKGSCIILMAKFDLEM----FLRAIEKHRVTHIWVVPP----L 71
           LP  H  GL       +  G   I+M+ F        +L+ I K++ T     P      
Sbjct: 215 LPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGS-PNFAYDY 273

Query: 72  ILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-----NVPSATVIQGYGLTETS 126
            +   +    +  DLSS     +GA P+ +E ME   +               YGL E +
Sbjct: 274 CVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEAT 333

Query: 127 GIATMENSFAGSRNI-----------------GSAGALA------PGVEALIVSVDTQKP 163
            + T     +  + +                  S G+        P  E  I+  DT  P
Sbjct: 334 LLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIP 393

Query: 164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTI--------DKKGWVHTGDLGYFDGDGQLY 215
              +Q+GEIW++  ++ +GY+N  + T+               ++ TGDLG+   + +LY
Sbjct: 394 CDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452

Query: 216 VVDRIKELI 224
           V  RIK+LI
Sbjct: 453 VTGRIKDLI 461

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  138 bits (350), Expect = 1e-38
 Identities = 45/262 (17%), Positives = 84/262 (32%), Gaps = 48/262 (18%)

Query: 4   MDQETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDL----EMFLRAIEK 59
            D +     +   +  LP +H  GL +  C  +  G   +L +          ++  +  
Sbjct: 221 ADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMAS 280

Query: 60  HRVTHIWVVPP----LILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAK-----N 110
                    P     L         +   DL ++  + SG+  +    ++  A      N
Sbjct: 281 DFHAFSAA-PNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFN 339

Query: 111 VPSATVIQGYGLTETSGIATMENSFAGSR---------NIGSAGALAPGVEALIVSV--- 158
           +    +   Y L E +                      + G A   A G    ++S    
Sbjct: 340 LQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLP 399

Query: 159 ----------DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI-----------DKK 197
                     DT    P   +GEIW+ G N+  GY+     ++ T             + 
Sbjct: 400 RSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEG 459

Query: 198 GWVHTGDLGYFDGDGQLYVVDR 219
            W+ TGD G+   DG+++++ R
Sbjct: 460 PWLRTGDSGFVT-DGKMFIIGR 480

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  130 bits (330), Expect = 3e-35
 Identities = 42/219 (19%), Positives = 75/219 (34%), Gaps = 15/219 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
           +   +     +  +          G+C  +  + KFD  + L+ +  + +    +  P++
Sbjct: 249 IMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK-SMMGAPIV 307

Query: 73  L-ALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM 131
              L +  L   +    L+   +    L  E +E          + + YG TET      
Sbjct: 308 YRMLLQQDL-SSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLT--C 363

Query: 132 ENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEI-----WLRGPNMMRGYYNN 186
             S       G  G  A   +  I+       LPP   G+I      +R   +  GY +N
Sbjct: 364 MVSKTMKIKPGYMGTAASCYDVQIIDDKGN-VLPPGTEGDIGIRVKPIRPIGIFSGYVDN 422

Query: 187 EQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIK 225
              T   I +  +   GD G  D DG    + R  ++I 
Sbjct: 423 PDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIIN 460

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  118 bits (297), Expect = 9e-31
 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 17/201 (8%)

Query: 34  GQLQKGSCIIL--MAKFDLEMFLRAIEKHRVTHIWVVPPLIL-ALAKHGLVKKFDLSSLK 90
           GQ   G  + +    +F+ +  L    K+ VT  +  PP I   L K  L   ++ S+LK
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVT-TFCAPPTIYRFLIKEDL-SHYNFSTLK 344

Query: 91  LVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRN-IGSAGALAP 149
                  PL  E+     +      +++G+G TET  +     +F       GS G   P
Sbjct: 345 YAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTET-VV--TIATFPWMEPKPGSIGKPTP 400

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPN-----MMRGYYNNEQATKLTIDKKGWVHTGD 204
           G +  ++     +     + GEI +         +   Y  + + T+ T    G+ HTGD
Sbjct: 401 GYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGD 458

Query: 205 LGYFDGDGQLYVVDRIKELIK 225
           + + D DG L+ V R  ++IK
Sbjct: 459 MAWMDEDGYLWFVGRADDIIK 479

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 97.5 bits (242), Expect = 5e-24
 Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 28/215 (13%)

Query: 15  VFLCVLPLF-HVFGLAVITCGQLQKGSCIIL---------------------MAKFDLEM 52
             L  +P   H+ G           G    +                          ++ 
Sbjct: 137 NTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQ 196

Query: 53  FLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNV- 111
               +    +  +   PP++  L K   V      SL  +  G   L  + ++  A  + 
Sbjct: 197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEIL 256

Query: 112 PSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGE 171
           P       YG T   G++                + +P +   +V   T + +   + G 
Sbjct: 257 PDCEFSASYGSTSALGVS-RSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGN 315

Query: 172 IW---LRGPNMMRGYYNNEQATKLTIDKKGWVHTG 203
           +    L            + A +L     G+    
Sbjct: 316 VIVTHLSPWAFYPRVAERDTAIRLP-GVSGFAGDR 349

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 72.3 bits (178), Expect = 7e-15
 Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 22/206 (10%)

Query: 33  CGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKL 91
               + G C +   +   L+   R   +  VTH  +VP L+            D   L  
Sbjct: 243 FLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----DAPHLVY 298

Query: 92  VGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME--NSFAGSRNIGSAGALAP 149
           +G G   +     +  + +     ++  YG TE +   +       + +R IG       
Sbjct: 299 LGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHP---LG 354

Query: 150 GVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID------KKGWVHTG 203
              A +++  + + +     GE+ + G  +  GY N   A            +     TG
Sbjct: 355 DSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYR-----TG 409

Query: 204 DLGYFDGDGQLYVVDRIKELIKYKGF 229
           D+   D D  +  + R  E +K +G 
Sbjct: 410 DIVRMDADSSILFLGRKDEQVKVRGQ 435

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 69.9 bits (172), Expect = 4e-14
 Identities = 45/211 (21%), Positives = 69/211 (32%), Gaps = 26/211 (12%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K    D +     I +  V      P             +  + +L   
Sbjct: 210 LALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHF 269

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGA 146
                 L      +  +  PSA +I  YG TE +   +                IG    
Sbjct: 270 YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYP-- 327

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWV------ 200
             P     I+  D +  L   + GEI + GP + +GY NN +    T +   +       
Sbjct: 328 -KPDSPTYIIDEDGK-ELSSGEQGEIIVTGPAVSKGYLNNPE---KTAEA--FFTFKGQP 380

Query: 201 --HTGDLGYFDGDGQLYVVDRIKELIKYKGF 229
             HTGD+G    D  L    R+   IKY G+
Sbjct: 381 AYHTGDIGSLTEDNILLYGGRLDFQIKYAGY 411

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 42/215 (19%), Positives = 74/215 (34%), Gaps = 35/215 (16%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           +   + +I+  +    D E     I +  V  ++    L   L   G      +  L+ +
Sbjct: 669 MLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED---WMKGLRCI 725

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM-----ENSFAGSRNIGSAGAL 147
             G        + +  + +    +I  YG TE +  AT            S  IG     
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP--- 782

Query: 148 APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK----------- 196
                  I++  +Q   P   +GE+ + G  + +GY N      LT +K           
Sbjct: 783 ISNASVYILNEQSQ-LQPFGAVGELCISGMGVSKGYVNRAD---LTKEKFIENPFKPGET 838

Query: 197 --KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGF 229
             +    TGDL  +  DG +    RI + +K +G 
Sbjct: 839 LYR----TGDLARWLPDGTIEYAGRIDDQVKIRGH 869

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 66.0 bits (162), Expect = 9e-13
 Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 31/198 (15%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G  +  + K      +    ++E+  +      P             +  L ++K  
Sbjct: 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTF 266

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGA 146
                 L  E+  +  +  P AT++  YG TE +   T             S  +G    
Sbjct: 267 LFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC-- 324

Query: 147 LAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK---------- 196
                  LI+  D     P  + GEI + GP++  GY  + +   LT             
Sbjct: 325 -KSDCRLLIMKEDGT-IAPDGEKGEIVIVGPSVSVGYLGSPE---LTEKAFTMIDGERAY 379

Query: 197 KGWVHTGDLGYFDGDGQL 214
           K    TGD GY + +G L
Sbjct: 380 K----TGDAGYVE-NGLL 392

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 33/199 (16%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           LQ G  +  + K      ++    ++K  +      P  +          +  L      
Sbjct: 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTF 265

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM------ENSFAGSRNIGSAGA 146
                 L   + +   +  P A +   YG TE +   T         S + S  +G A  
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFA-- 323

Query: 147 LAPGVEALIVSVDTQ-KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--------- 196
             P +   I  +D + +PLP  + GEI + GP++ RGY    +   LT            
Sbjct: 324 -KPDMNIFI--MDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPE---LTEKAFFSHEGQWA 377

Query: 197 -KGWVHTGDLGYFDGDGQL 214
            +    TGD G+   DGQ+
Sbjct: 378 YR----TGDAGFIQ-DGQI 391

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 40/199 (20%)

Query: 36  LQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
           L  G+ + ++ K    D   F + I +  +T I + P  ++ L          + S++ +
Sbjct: 245 LLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTL 298

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATM----ENSFAGSRNIGSAGALA 148
            +  +     L+ +  + V     I  YG TET+  AT     + +   S  IG+     
Sbjct: 299 ITAGSATSPSLVNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVPIGAP---I 352

Query: 149 PGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK------------ 196
              +  IV  + Q      + GE+ + G  + RGY+   +   LT  K            
Sbjct: 353 QNTQIYIVDENLQ-LKSVGEAGELCIGGEGLARGYWKRPE---LTSQKFVDNPFVPGEKL 408

Query: 197 -KGWVHTGDLGYFDGDGQL 214
            K    TGD   +  DG +
Sbjct: 409 YK----TGDQARWLSDGNI 423

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 40/181 (22%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL------------GKE 102
           I++H+VT  +V P  +  L + G   ++   L SL+ +GS   P+            GK 
Sbjct: 352 IDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGK- 410

Query: 103 LMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI---GSAGALAPGVEALIVSVD 159
              E         ++  Y  TE+     +    AG       GSA     G++A+++  +
Sbjct: 411 --NEIP-------IVDTYWQTESGSH--LVTPLAGGVTPMKPGSASFPFFGIDAVVLDPN 459

Query: 160 TQKPLPPNQLGEI------WLRGPNMMRGYYNNEQATKLT--IDKKGWVHTGDLGYFDGD 211
           T + L  +    +      W   P+  R  + N      T      G+  TGD    D D
Sbjct: 460 TGEELNTSHAEGVLAVKAAW---PSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKD 516

Query: 212 G 212
           G
Sbjct: 517 G 517

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 33/184 (17%)

Query: 57  IEKHRVTHIWVVPPLILALAKHG--LVKKFDLSSLKLVGSGAAPL------------GKE 102
           ++KH+V  ++  P  I AL   G   ++  D SSL+++GS   P+            GK 
Sbjct: 346 VDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGK- 404

Query: 103 LMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNI--GSAGALAPGVEALIVSVDT 160
             E+C        V+  +  TET G   M     G+  +  GSA     GV+  +V  + 
Sbjct: 405 --EKCP-------VVDTWWQTETGGF--MITPLPGAIELKAGSATRPFFGVQPALVD-NE 452

Query: 161 QKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLT--IDKKGWVHTGDLGYFDGDGQLYV 216
             P      G + +    P   R  + + +  + T     K    +GD    D DG  ++
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWI 512

Query: 217 VDRI 220
             R+
Sbjct: 513 TGRV 516

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 34/201 (16%)

Query: 49  DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA 108
           D  +  + I +      W+   L   L          L  L+ + +G   L    +    
Sbjct: 241 DPGVLRQLIGERGADSAWLTASLFNTLVDLDPD---CLGGLRQLLTGGDILSVPHVRRAL 297

Query: 109 KNVPSATVIQGYGLTETSGIATM-----ENSFAGSRNIGSAGALAPGVEALIVSVDTQKP 163
              P   ++ GYG TE +          ++       IG A     G   L++    Q  
Sbjct: 298 LRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKA---IAGTAVLLLDEHGQ-E 353

Query: 164 LP-PNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--------------KGWVHTGDLGYF 208
           +  P++ GEI   G  + +GY N+      T                 +    TGD   +
Sbjct: 354 IAEPDRAGEIVAFGAGLAQGYRNDAA---RTRASFVELPYRGRLLRAYR----TGDRARY 406

Query: 209 DGDGQLYVVDRIKELIKYKGF 229
           D  G+L  + R    +K  G+
Sbjct: 407 DEQGRLRFIGRGDGQVKLNGY 427

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 32/207 (15%), Positives = 55/207 (26%), Gaps = 49/207 (23%)

Query: 13  DYVFLCVLPLFHVFGLAVITCG-------QLQKGSCIILMAKFDLEMFLRA--------- 56
            Y   C +  F +F L +  C         LQK     L+ + D     R+         
Sbjct: 173 SYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQK-----LLYQIDPNWTSRSDHSSNIKLR 226

Query: 57  IE--KHRVTHIWVVPPLILAL--------AKHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           I   +  +  +    P    L        AK      F+LS   L+ +    +   L   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 107 CAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP 166
              ++            E   +           +      L    E L  +     P   
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSL------LLKYLDC-RPQDLPR--EVLTTN-----PRRL 330

Query: 167 NQLGEIWLRGPNMMRGYYNNEQATKLT 193
           + + E  +R        + +    KLT
Sbjct: 331 SIIAES-IRDGLATWDNWKHVNCDKLT 356

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 26/52 (50%)

Query: 81  VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           +KK   +SLKL    +AP               A  I+          ATME
Sbjct: 22  LKKLQ-ASLKLYADDSAP---------------ALAIK----------ATME 47

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 14/140 (10%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGS 94
           G  +I       E  ++ I+  R   I V P  +L++A    + GL      SSL++   
Sbjct: 160 GLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGL--DPVQSSLRIGIF 217

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTET--SGIATMENSFAGSRNIGSAGALAPGVE 152
           GA P   ++     + +     +  YGL+E    G+A+          I          E
Sbjct: 218 GAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFY---PE 273

Query: 153 ALIVSVDTQKPLPPNQLGEI 172
             I+  +T + LP  +LGE+
Sbjct: 274 --IIDPETGEVLPDGELGEL 291

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 34/140 (24%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 39  GSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGS 94
           G  ++ M+    E  ++ I       I V P  +L L     + G+      SSLK+   
Sbjct: 162 GCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM--DPAESSLKIGIF 219

Query: 95  GAAPLGKELMEECAKNVPSATVIQGYGLTETS--GIATMENSFAGSRNIGSAGALAPGVE 152
           GA P  + L  E    V     +  YGL+E    G+A           I          E
Sbjct: 220 GAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVETKDGPVIWEDHFY---PE 275

Query: 153 ALIVSVDTQKPLPPNQLGEI 172
             I+   T + LP    GE+
Sbjct: 276 --IIDPVTGEVLPDGSQGEL 293

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 35/138 (25%)

Query: 51  EMFLRAIEKHRVTHIWVVPPLILALA----KHGLVKKFDLSSLKLVGSGAAPLGKELMEE 106
           +  ++ I   + T +  +P   + LA    + G+      ++LK +  GA P   E   +
Sbjct: 168 KRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI--DPRETTLKTLVIGAEPHTDEQRRK 225

Query: 107 CAKNVPSATVIQGYGLTETSGIAT------------MENSFAGSRNIGSAGALAPGVEAL 154
             + + +      +G+TE +G                E+ +               VE  
Sbjct: 226 -IERMLNVKAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYL--------------VE-- 268

Query: 155 IVSVDTQKPLPPNQLGEI 172
           I+  +T +P+P  ++GE+
Sbjct: 269 IIDPETGEPVPEGEIGEL 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.95
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.66
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.6
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.51

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=3.4e-44  Score=310.45  Aligned_cols=228  Identities=44%  Similarity=0.723  Sum_probs=209.1

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++++|++|.+|+...++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+........++
T Consensus       218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  297 (536)
T 3ni2_A          218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLS  297 (536)
T ss_dssp             SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCT
T ss_pred             ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCc
Confidence            34567799999999999999977889999999999999999999999999999999999999999999998877777899


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceecccccccccccccccc---CCCCCCCCCcccccCCCcEEEEEeCCCCccC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN---SFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~---~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v  164 (235)
                      ++|.+++||+++++++.+.+++.|+++++++.||+||++++++.+.   ........+++|+|+++++++++|+++++++
T Consensus       298 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~  377 (536)
T 3ni2_A          298 SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL  377 (536)
T ss_dssp             TCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC
T ss_pred             cceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC
Confidence            9999999999999999999999998799999999999997665432   1222445678999999999999998899999


Q ss_pred             CCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|+.|||+++||.++.||+++|+.+.+.|+.+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       378 ~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  448 (536)
T 3ni2_A          378 PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE  448 (536)
T ss_dssp             CTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHH
T ss_pred             CCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999864

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.5e-43  Score=307.30  Aligned_cols=224  Identities=42%  Similarity=0.684  Sum_probs=190.0

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...++|++++++|++|.+|+ ..++.++..|+++++.+++++..+++.++++++|+++++|+++..+.+........+++
T Consensus       230 ~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~  308 (550)
T 3rix_A          230 QIIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSN  308 (550)
T ss_dssp             CCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTT
T ss_pred             cCCCCcEEEEechHHHHHHH-HHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCccc
Confidence            34567999999999999998 57788899999999999999999999999999999999999999999988777778999


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.+++||+++++++.+++.+.|+...+++.||+||+++++...+..  ....+++|+|+++++++++|++++++++.|+
T Consensus       309 lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~  386 (550)
T 3rix_A          309 LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ  386 (550)
T ss_dssp             CCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTTC
T ss_pred             ccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCCC
Confidence            99999999999999999999999855699999999999877765443  4566789999999999999988999999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+|+||.++.||+++|+.+.+.|+.+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       387 ~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  453 (550)
T 3rix_A          387 RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE  453 (550)
T ss_dssp             CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------
T ss_pred             CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHH
Confidence            9999999999999999999999999988999999999999999999999999999999999999975

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=1.5e-43  Score=307.05  Aligned_cols=224  Identities=39%  Similarity=0.679  Sum_probs=204.4

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...++|++++++|++|.+|+...++.++ .|+++++.+++++..+++.++++++|+++++|+++..|.+........+++
T Consensus       232 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~  310 (548)
T 2d1s_A          232 QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSN  310 (548)
T ss_dssp             CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTT
T ss_pred             CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccc
Confidence            4456799999999999999966677778 999999999999999999999999999999999999999887666667899


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.+++||+++++++.+++.+.|++.++++.||+||++.++......  ....+++|+|+++++++++|++++++++.|+
T Consensus       311 lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~  388 (548)
T 2d1s_A          311 LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPNR  388 (548)
T ss_dssp             CCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTTC
T ss_pred             eeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCCC
Confidence            99999999999999999999999778999999999999876653322  3456789999999999999987999999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++||.++.||+++|+.+.+.|+.+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       389 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~e  455 (548)
T 2d1s_A          389 RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE  455 (548)
T ss_dssp             CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHH
T ss_pred             CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHH
Confidence            9999999999999999999999999988999999999999999999999999999999999999864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=6.7e-43  Score=300.19  Aligned_cols=224  Identities=30%  Similarity=0.458  Sum_probs=204.3

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+...++|++++++|++|.+|+...++.+++.|+++++.++++++.+++.++  ++|+++++|+++..+++........+
T Consensus       190 ~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~  267 (503)
T 4fuq_A          190 YWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETT  267 (503)
T ss_dssp             HTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTT
T ss_pred             HhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccch
Confidence            3456678999999999999998677888999999999999999999999998  79999999999999999887777778


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.||+++++++.+.+.+.++ .++++.||+||++.+.....  ......+++|+|+++++++++|++++++++.
T Consensus       268 ~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~  344 (503)
T 4fuq_A          268 GHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPR  344 (503)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCT
T ss_pred             hhcEEEEECCCCCCHHHHHHHHHHhC-CCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcC
Confidence            99999999999999999999999986 89999999999987654322  2245567899999999999999889999999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+|+||.++.||+++|+.+.+.|..+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       345 g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  413 (503)
T 4fuq_A          345 GDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKE  413 (503)
T ss_dssp             TCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHH
T ss_pred             CCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHH
Confidence            999999999999999999999999999988999999999999999999999999999999999999864

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=2.5e-42  Score=298.94  Aligned_cols=225  Identities=24%  Similarity=0.338  Sum_probs=197.7

Q ss_pred             ccCCCCcEEEEecChhHHHhHHH-HHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++++|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........+
T Consensus       218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l  297 (539)
T 1mdb_A          218 CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDL  297 (539)
T ss_dssp             HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCC
T ss_pred             hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCc
Confidence            34567799999999999999855 68999999999999999999999999999999999999999999988765556678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCC-cEEEEEeCCCCccCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPG-VEALIVSVDTQKPLP  165 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~-~~~~~~d~~~~~~v~  165 (235)
                      +++|.+++||+++++++.+++.+.++ +++++.||+||++..... ..........++|+|+++ .+++++|+ ++++++
T Consensus       298 ~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~  374 (539)
T 1mdb_A          298 SSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWDD-HDRDVK  374 (539)
T ss_dssp             TTCCEEEEESSCCCHHHHTTHHHHTC-SEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEECT-TSCBCC
T ss_pred             cceeEEEEcCCCCCHHHHHHHHHHhC-CcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEECC-CCCCCc
Confidence            99999999999999999999999996 999999999996543322 111101223578999975 58999994 899999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++||.++.||+++|+.+.+.|..+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       375 ~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  444 (539)
T 1mdb_A          375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE  444 (539)
T ss_dssp             TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHH
T ss_pred             CCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHH
Confidence            9999999999999999999999999999988999999999999999999999999999999999999864

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.8e-41  Score=311.36  Aligned_cols=228  Identities=45%  Similarity=0.743  Sum_probs=197.1

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++++|++|.+++...++.++..|+++++.+++++..+++.++++++|++.++|+++..+.+........++
T Consensus       265 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~  344 (979)
T 3tsy_A          265 LYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLS  344 (979)
T ss_dssp             SCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCT
T ss_pred             ccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCcc
Confidence            34567799999999999999977889999999999999999999999999999999999999999999998877777899


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceecccccccccccccccc---CCCCCCCCCcccccCCCcEEEEEeCCCCccC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMEN---SFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~---~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v  164 (235)
                      ++|.+++||+++++++.+++.+.|+++++++.||+||++++++...   ........+.+|+|+++++++++|+++++++
T Consensus       345 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~  424 (979)
T 3tsy_A          345 SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSL  424 (979)
T ss_dssp             TCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCC
Confidence            9999999999999999999999998899999999999997665432   1222345678999999999999998889999


Q ss_pred             CCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|+.|||+|+||.++.||+++|+.+.+.|+.++||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       425 ~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~e  495 (979)
T 3tsy_A          425 SRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAE  495 (979)
T ss_dssp             CTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------
T ss_pred             CCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999975

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=3.4e-41  Score=293.99  Aligned_cols=222  Identities=23%  Similarity=0.310  Sum_probs=198.1

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEc--cCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM--AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~--~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      ....+++++++..|++|..+.+..++.++..|+++++.  +.+++..+++.++++++|+++++|++++.|.+.. .....
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~  339 (580)
T 3etc_A          261 QNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYN  339 (580)
T ss_dssp             SCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---C
T ss_pred             hCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCC
Confidence            44567799999999999999877788999999999988  4689999999999999999999999999998763 34457


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      ++++|.+++||+++++++.+++.+.++ +++++.||+||++.++...+..  ..+.+++|+|+++++++++|+ ++++++
T Consensus       340 l~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd~-~g~~~~  415 (580)
T 3etc_A          340 FSTLKYAVVAGEPLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMDR-DGRLCE  415 (580)
T ss_dssp             CTTCCEEEECSSCCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEECT-TSCBCC
T ss_pred             CccceEEEEccCCCCHHHHHHHHHHhC-CeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEECC-CCCCCC
Confidence            899999999999999999999999886 8999999999998766554333  456678999999999999995 799999


Q ss_pred             CCCceEEEEEc-----CcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRG-----PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~-----~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||++++     +.++.||+++|+.+.+.| .+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       416 ~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~e  489 (580)
T 3etc_A          416 VGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFE  489 (580)
T ss_dssp             TTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHH
T ss_pred             CCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHH
Confidence            99999999997     789999999999999999 6899999999999999999999999999999999999864

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=4.3e-41  Score=296.96  Aligned_cols=228  Identities=21%  Similarity=0.283  Sum_probs=200.9

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--   80 (235)
                      .+...++|++++.+|++|.+|+...++.+|..|+++++.+.    +++..+++.++++++|+++++|++++.|.+...  
T Consensus       292 ~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~  371 (652)
T 1pg4_A          292 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA  371 (652)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG
T ss_pred             hcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc
Confidence            34566789999999999999997788999999999999874    589999999999999999999999999988654  


Q ss_pred             cCCCCCCCceEEEecccCCcHHHHHHHHHhCC--CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeC
Q 026632           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      ....+++++|.++++|+++++++++++.+.++  ++++++.||+||+++++..........+.+++|+|+++++++++|+
T Consensus       372 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~  451 (652)
T 1pg4_A          372 IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN  451 (652)
T ss_dssp             TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT
T ss_pred             cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECC
Confidence            23456899999999999999999999999886  3789999999999976665433222455678999999999999995


Q ss_pred             CCCccCCCCCceEEEEEc--CcccccccCCccccccccc--CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          159 DTQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       159 ~~~~~v~~g~~Gel~v~~--~~~~~~y~~~~~~~~~~~~--~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                       +|++++.|+.|||++++  |.++.||+++++.+.+.+.  .+|||+|||+|++|++|++++.||+||+||++|++|+|.
T Consensus       452 -~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~  530 (652)
T 1pg4_A          452 -EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTA  530 (652)
T ss_dssp             -TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHH
T ss_pred             -CCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHH
Confidence             79999999999999999  7899999999998877763  378999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus       531 e  531 (652)
T 1pg4_A          531 E  531 (652)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=4.5e-42  Score=297.64  Aligned_cols=226  Identities=24%  Similarity=0.358  Sum_probs=187.8

Q ss_pred             eccCCCCcEEEEecChhHHHhHHH-HHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      .+...++|++++++|++|.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++........
T Consensus       226 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  305 (544)
T 3o83_A          226 ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ  305 (544)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH
T ss_pred             HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc
Confidence            345667899999999999999854 5889999999999999999999999999999999999999999999876655567


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccC-CCcEEEEEeCCCCccC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKPL  164 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~d~~~~~~v  164 (235)
                      ++++|.+++||+++++++.+++.+.++ +++++.||+||++......... ......++|+|+ ++.+++++| ++++++
T Consensus       306 ~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~~~  382 (544)
T 3o83_A          306 IQSLKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYTRLDDS-DEQIFTTQGRPISSDDEIKIVD-EQYREV  382 (544)
T ss_dssp             HTTCCEEEEESSCCCHHHHTHHHHHHC-SEEEEEEECTTSCEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSCBC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHhC-CcEEeeeccccccceeecCCCc-hhhccCCCceecCCCcEEEEEC-CCCCCC
Confidence            889999999999999999999999885 9999999999998544432111 112235689996 899999999 589999


Q ss_pred             CCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          165 PPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++|+.|||+++||.++.||+++|+.+.+.|+.+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       383 ~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  453 (544)
T 3o83_A          383 PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEE  453 (544)
T ss_dssp             CTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------
T ss_pred             CCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999975

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.3e-41  Score=292.50  Aligned_cols=227  Identities=29%  Similarity=0.471  Sum_probs=189.9

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC--C
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK--F   84 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--~   84 (235)
                      .+...++|++++++|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+......  .
T Consensus       215 ~~~~~~~d~~~~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  293 (549)
T 3g7s_A          215 ATGLSHMDTIVGCMPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY  293 (549)
T ss_dssp             HHCCCTTCEEECCSCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCC
T ss_pred             HcCCCCCCEEEEeCcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccC
Confidence            34456779999999999999995 48889999999999999999999999999999999999999999988654433  5


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHh----CCC--CceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKN----VPS--ATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~----~~~--~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      .++++|.++.||+++++++.+.+.+.    +++  +++++.||+||++.++....... ......+|+|+++++++++|+
T Consensus       294 ~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~  372 (549)
T 3g7s_A          294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISL  372 (549)
T ss_dssp             CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECS
T ss_pred             CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeC
Confidence            68899999999999999999999987    643  88999999999998776543321 234567899999999999998


Q ss_pred             CCCccCCCCCceEEEEEcCcccccccCCccccccccc--CCC--eEecCceEEEcCCCcEEEEeccCCceEeccEEeecC
Q 026632          159 DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID--KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSN  234 (235)
Q Consensus       159 ~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~--~~g--~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~  234 (235)
                      +++++++.|+.|||+|+||.++.||+++|+.+.+.|.  .+|  ||+|||+|+++++|.+++.||+||+||++|++|+|.
T Consensus       373 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~  452 (549)
T 3g7s_A          373 EDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPF  452 (549)
T ss_dssp             SSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CH
T ss_pred             CCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHH
Confidence            8999999999999999999999999999999998884  567  999999999999999999999999999999999986


Q ss_pred             C
Q 026632          235 W  235 (235)
Q Consensus       235 ~  235 (235)
                      |
T Consensus       453 e  453 (549)
T 3g7s_A          453 E  453 (549)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=6.6e-41  Score=290.15  Aligned_cols=224  Identities=29%  Similarity=0.406  Sum_probs=195.1

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC-CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK-FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++++|++|.+++ ..++.++..|+++++.+. +++..+++.++++++|+++++|+++..|.+........+
T Consensus       214 ~~~~~~d~~l~~~p~~h~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l  292 (541)
T 1v25_A          214 TALSEKDVVLPVVPMFHVNAW-CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL  292 (541)
T ss_dssp             TCCCTTCEEEECSCTTSHHHH-THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCC
T ss_pred             ccCCCCCEEEEeccchhhhHH-HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcc
Confidence            344677999999999999998 567788999999999864 699999999999999999999999999988765555578


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCC---------CCCCCcccccCCCcEEEEEe
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAG---------SRNIGSAGALAPGVEALIVS  157 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~---------~~~~~~~g~p~~~~~~~~~d  157 (235)
                      +++|.+++||+++++++.+.+ +.++ +++++.||+||++++++.......         .....++|+|+++++++++|
T Consensus       293 ~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d  370 (541)
T 1v25_A          293 KTLRRLVVGGSAAPRSLIARF-ERMG-VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD  370 (541)
T ss_dssp             SSCCEEEECSSCCCHHHHHHH-HHTT-CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC
T ss_pred             hhccEEEECCCCCCHHHHHHH-HHhC-CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC
Confidence            899999999999999999999 6675 999999999999987665432100         01235789999999999999


Q ss_pred             CCCCccCCC--CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          158 VDTQKPLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       158 ~~~~~~v~~--g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      + ++++++.  ++.|||+++||.++.||+++|+.+.+.|..+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       371 ~-~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~e  449 (541)
T 1v25_A          371 E-EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD  449 (541)
T ss_dssp             T-TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHH
T ss_pred             C-CCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHH
Confidence            5 7888884  368999999999999999999999999977999999999999999999999999999999999999864

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.1e-40  Score=290.31  Aligned_cols=222  Identities=19%  Similarity=0.300  Sum_probs=198.6

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      +...++|++++++|++|.+++...++.++..|+++++.+  .+++..+++.++++++|+++++|+++..+.+.. .....
T Consensus       242 ~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~  320 (570)
T 3c5e_A          242 TGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYK  320 (570)
T ss_dssp             TSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCC
T ss_pred             cCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccc
Confidence            345677999999999999999667899999999999986  689999999999999999999999999998763 33446


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      ++++|.+++||+++++++.+.+.+.++ +++++.||+||++.++......  ....+++|+|+++++++++|+ ++++++
T Consensus       321 ~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d~-~g~~~~  396 (570)
T 3c5e_A          321 FPHLQNCVTVGESLLPETLENWRAQTG-LDIRESYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIIDD-KGNVLP  396 (570)
T ss_dssp             CTTCCEEEEESSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEECT-TSCBCC
T ss_pred             cccceEEEEcCCcCCHHHHHHHHHHhC-CchhhccchhhcccceecCccc--ccCCCcccccCCCceEEEECC-CCCCCC
Confidence            789999999999999999999999885 8999999999999765543322  345678999999999999995 799999


Q ss_pred             CCCceEEEEE-----cCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLR-----GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~-----~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++     +|.++.||+++|+.+.+.| .++||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       397 ~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~e  470 (570)
T 3c5e_A          397 PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE  470 (570)
T ss_dssp             TTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH
T ss_pred             CCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHH
Confidence            9999999999     9999999999999999988 6899999999999999999999999999999999999864

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=5.6e-41  Score=289.14  Aligned_cols=223  Identities=27%  Similarity=0.410  Sum_probs=199.1

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+...++|++++++|++|.+++...++.++ .|+++++.+.+++..+++.++++++|++.++|+++..+.+........+
T Consensus       205 ~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  283 (517)
T 3r44_A          205 TIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDA  283 (517)
T ss_dssp             HSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCC
T ss_pred             hcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCC
Confidence            345567799999999999999955455555 9999999999999999999999999999999999999998776666678


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.+++||+++++++.+.+.+.  ++++++.||+||+++.+............+++|+|.++.+++++|+ ++++++.
T Consensus       284 ~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~~~~~~~  360 (517)
T 3r44_A          284 PDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGD-DGVIREH  360 (517)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECT-TSCEESS
T ss_pred             CcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECC-CCCCCCC
Confidence            999999999999999999999887  5999999999999887665443333455678999999999999995 7889998


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      | .|||+++||.++.||+++|+.+.+.| .+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       361 g-~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  427 (517)
T 3r44_A          361 G-EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAE  427 (517)
T ss_dssp             E-EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHH
T ss_pred             C-CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHH
Confidence            9 89999999999999999999999999 7899999999999999999999999999999999999864

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=9.7e-41  Score=287.33  Aligned_cols=226  Identities=20%  Similarity=0.250  Sum_probs=201.3

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|++++++|++|.+++ ..++.+++.|+++++.+.   +++..+++.++++++|++.++|+++..+++......
T Consensus       179 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  257 (512)
T 3fce_A          179 DFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE  257 (512)
T ss_dssp             HTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST
T ss_pred             hcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc
Confidence            3455678999999999999998 678999999999999876   689999999999999999999999999988877777


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC---CCCCCCcccccCCCcEEEEEeCCC
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDT  160 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~d~~~  160 (235)
                      ..++++|.++++|+++++++.+++.+.|+++++++.||+||++.++.......   .......+|+|.++++++++| ++
T Consensus       258 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~  336 (512)
T 3fce_A          258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-ED  336 (512)
T ss_dssp             TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SS
T ss_pred             hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CC
Confidence            78899999999999999999999999998799999999999998766433211   012345789999999999999 58


Q ss_pred             CccCCCCCceEEEEEcCcccccccCCcccccccc---cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          161 QKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       161 ~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~---~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++++|+.|||+++||.++.||+++|+.+.+.|   +.++||+|||+|++ ++|++++.||+||+||++|++|+|+|
T Consensus       337 g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~e  413 (512)
T 3fce_A          337 GTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEE  413 (512)
T ss_dssp             SCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHH
T ss_pred             CCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHH
Confidence            9999999999999999999999999999999887   34679999999999 79999999999999999999999864

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.6e-40  Score=287.04  Aligned_cols=223  Identities=21%  Similarity=0.321  Sum_probs=193.5

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEc-cCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILM-AKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~-~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      +...++|++++++|++|.+|+...++.++..|+++++. +.+++..+++.++++++|+++++|+++..+++.........
T Consensus       220 ~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  299 (529)
T 2v7b_A          220 LGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARAD  299 (529)
T ss_dssp             CCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGG
T ss_pred             cCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccC
Confidence            44567799999999999999977788899999999987 56899999999999999999999999999987654433212


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      .++|.+++||+++++++.+.+.+.++ +++++.||+||++.+.......  ....+++|+|+++++++++| ++++++++
T Consensus       300 ~~lr~~~~gGe~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~  375 (529)
T 2v7b_A          300 VAIRICTSAGEALPREIGERFTAHFG-CEILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPD  375 (529)
T ss_dssp             CCCCEEEECSSCCCHHHHHHHHHHHS-CCEEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHhC-CceeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCC
Confidence            48999999999999999999999885 9999999999997765544322  34557899999999999999 48999999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+++||.++.||+++++.+.+.| .++||+|||+++++++|++++.||+||+||++|++|+|.|
T Consensus       376 g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e  443 (529)
T 2v7b_A          376 GEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVE  443 (529)
T ss_dssp             TSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHH
T ss_pred             CCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHH
Confidence            9999999999999999999999999888 5899999999999999999999999999999999999853

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=3.5e-40  Score=283.82  Aligned_cols=225  Identities=20%  Similarity=0.272  Sum_probs=199.0

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      +...++|++++++|++|..++ ..++.++..|+++++.+.   +++..+++.++++++|++.++|+++..+++.......
T Consensus       179 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  257 (511)
T 3e7w_A          179 FPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQD  257 (511)
T ss_dssp             STTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred             cCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccc
Confidence            445677999999999999998 678999999999999875   6899999999999999999999999999988776777


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC---CCCCCCcccccCCCcEEEEEeCCCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      .++++|.++.+|+++++++.+.+.+.|+++++++.||+||++.+++......   .......+|+|.++++++++|+ ++
T Consensus       258 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~-~g  336 (511)
T 3e7w_A          258 LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDE-EG  336 (511)
T ss_dssp             TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECT-TS
T ss_pred             cCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECC-CC
Confidence            7899999999999999999999999998799999999999998766432111   1233456899999999999995 79


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCccccccccc-CCC--eEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-KKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-~~g--~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++.|+.|||+++||.++.||+++|+.+.+.|. .+|  ||+|||+|++ ++|++++.||+||+||++|++|+|+|
T Consensus       337 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~e  412 (511)
T 3e7w_A          337 QPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEE  412 (511)
T ss_dssp             CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHH
T ss_pred             CCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHH
Confidence            9999999999999999999999999999998883 233  7999999999 68999999999999999999999864

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.4e-40  Score=288.28  Aligned_cols=223  Identities=23%  Similarity=0.271  Sum_probs=180.6

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      ....++|++++++|++|..+. ..++.++..|+++++.+  .+++..+++.++++++|++.++|+++..|.+...   ..
T Consensus       249 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~  324 (570)
T 4gr5_A          249 AGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EA  324 (570)
T ss_dssp             SCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GG
T ss_pred             cCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hh
Confidence            345667999999999997766 57888999999999986  4689999999999999999999999999987643   24


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC--CCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                      ++++|.+++||+++++++.+.+.+.++++++++.||+||++++........  .......+|+|+++++++++|+ ++++
T Consensus       325 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~~~~  403 (570)
T 4gr5_A          325 FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDD-DLKP  403 (570)
T ss_dssp             GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECT-TSCB
T ss_pred             CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECC-CCCC
Confidence            789999999999999999999999998899999999999988766433221  1233456899999999999994 7999


Q ss_pred             CCCCCceEEEEEcCcccccccCCcccccccccC--------CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK--------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~--------~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|+.|||+|+||.++.||+++|+.+.+.|..        ++||+|||+|++|++|++++.||+||+||++|++|+|.|
T Consensus       404 ~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~e  483 (570)
T 4gr5_A          404 AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGE  483 (570)
T ss_dssp             CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------
T ss_pred             CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHH
Confidence            999999999999999999999999999988843        379999999999999999999999999999999999975

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=2.3e-40  Score=284.52  Aligned_cols=217  Identities=22%  Similarity=0.358  Sum_probs=194.7

Q ss_pred             CCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--cCCCCCCC
Q 026632           11 ELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKFDLSS   88 (235)
Q Consensus        11 ~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--~~~~~l~~   88 (235)
                      .++|++++.+|++|.+|+...++.++..|+++++.+.+++..+++.++++++|+++++|+++..|.+...  .....+++
T Consensus       194 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~  273 (504)
T 1t5h_X          194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDS  273 (504)
T ss_dssp             STTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTT
T ss_pred             CCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCcc
Confidence            5679999999999999986778999999999999999999999999999999999999999999987652  23446889


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCC---ccCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQ---KPLP  165 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~---~~v~  165 (235)
                      +|.+++||+++++++.+.+.+.++ .++++.||+||++.... .+    ....+..|.|.++++++++|+ ++   ++++
T Consensus       274 lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~-~~----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~  346 (504)
T 1t5h_X          274 LRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLY-MR----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVA  346 (504)
T ss_dssp             CCEEEECCTTCCHHHHHHHHHHCC-SEEEEEEEETTTEEEEE-EE----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCC
T ss_pred             ccEEEEcCCcCCHHHHHHHHHhcC-cceeeeecccccccccc-cc----CCCCCccccCCCCCceeEEec-cCCCCCcCC
Confidence            999999999999999999999997 89999999999943222 22    234567899999999999996 45   8999


Q ss_pred             CCCceEEEEE-cCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLR-GPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~-~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|+.|||+++ +|.++.||+++|+.+.+.| .+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       347 ~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e  416 (504)
T 1t5h_X          347 NGEEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE  416 (504)
T ss_dssp             TTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH
T ss_pred             CCCcceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHH
Confidence            9999999999 8999999999999999998 7899999999999999999999999999999999999864

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.6e-40  Score=293.66  Aligned_cols=229  Identities=20%  Similarity=0.325  Sum_probs=201.0

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--   80 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--   80 (235)
                      .+...++|++++.+|++|..|+...++.+|..|+++++.+.    +++..+++.|+++++|+++++|++++.|.+...  
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~  377 (663)
T 1ry2_A          298 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY  377 (663)
T ss_dssp             HSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS
T ss_pred             hcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc
Confidence            34566789999999999999997788899999999999864    589999999999999999999999999988654  


Q ss_pred             cCCCCCCCceEEEecccCCcHHHHHHHHHhCC--CCceeccccccccccccccccC-CCCCCCCCcccccCCCcEEEEEe
Q 026632           81 VKKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENS-FAGSRNIGSAGALAPGVEALIVS  157 (235)
Q Consensus        81 ~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~g~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~~d  157 (235)
                      ....+++++|.++++|+++++++++++.+.++  ++++++.||+||++.++..... .....+.+++|.|+++++++++|
T Consensus       378 ~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d  457 (663)
T 1ry2_A          378 IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD  457 (663)
T ss_dssp             SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC
T ss_pred             cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEc
Confidence            23457899999999999999999999999886  3889999999999976665432 22245668899999999999999


Q ss_pred             CCCCccCCC-CCceEEEEEc--CcccccccCCccccccccc--CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEee
Q 026632          158 VDTQKPLPP-NQLGEIWLRG--PNMMRGYYNNEQATKLTID--KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVT  232 (235)
Q Consensus       158 ~~~~~~v~~-g~~Gel~v~~--~~~~~~y~~~~~~~~~~~~--~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~  232 (235)
                      +++|++++. |+.|||++++  |.++.||+++++.+.+.+.  .+|||+|||+|+++++|++++.||+||+||++|++|+
T Consensus       458 ~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~  537 (663)
T 1ry2_A          458 PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLS  537 (663)
T ss_dssp             SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBC
T ss_pred             CCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcC
Confidence            768999988 9999999999  5899999999998887764  3789999999999999999999999999999999999


Q ss_pred             cCC
Q 026632          233 SNW  235 (235)
Q Consensus       233 p~~  235 (235)
                      |.|
T Consensus       538 ~~e  540 (663)
T 1ry2_A          538 TAE  540 (663)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=6.8e-40  Score=287.59  Aligned_cols=225  Identities=21%  Similarity=0.283  Sum_probs=195.7

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEcc--CCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMA--KFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~--~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      .+...++|++++++|++|..++ ..++.++..|+++++.+  .+++..+++.++++++|++.++|+++..+.+..   ..
T Consensus       198 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~  273 (620)
T 4dg8_A          198 FLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PD  273 (620)
T ss_dssp             GGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GG
T ss_pred             hhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hh
Confidence            3455677999999999999998 67899999999999964  579999999999999999999999999998753   23


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC--CCCCCCcccccCCCcEEEEEeCCCCc
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSVDTQK  162 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~~~d~~~~~  162 (235)
                      .++++|.+++||++++++..+.+.+.+++++++|.||+||++.+++......  .......+|+|+++++++++|++...
T Consensus       274 ~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~  353 (620)
T 4dg8_A          274 CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQE  353 (620)
T ss_dssp             GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCB
T ss_pred             hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCC
Confidence            5789999999999999999999988887799999999999998765432221  12345679999999999999964444


Q ss_pred             cCCCCCceEEEEEcCcccccccCCcccccccccCC-------CeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          163 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKK-------GWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       163 ~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~-------g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +++.|+.|||+|+||.++.||+++|+.+.+.|..+       +||+|||+|+++++|.+++.||+||+||++|++|+|.|
T Consensus       354 ~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~e  433 (620)
T 4dg8_A          354 IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA  433 (620)
T ss_dssp             CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHH
T ss_pred             CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHH
Confidence            48999999999999999999999999999988442       79999999999999999999999999999999999864

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.4e-40  Score=285.81  Aligned_cols=223  Identities=30%  Similarity=0.438  Sum_probs=193.6

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcC---CC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK---KF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~---~~   84 (235)
                      +...++|++++.+|++|..|+...++.++..|+++++.+++++..+++.+ ++++|+++++|+++..+.+.....   ..
T Consensus       191 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  269 (505)
T 3nyq_A          191 WQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAK  269 (505)
T ss_dssp             HTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHH
T ss_pred             hCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhc
Confidence            45567799999999999999977889999999999999999999999999 789999999999999998743322   23


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPL  164 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v  164 (235)
                      .++++|.++.||+++++++.+++.+.++ +++++.||+||++.++......  ......+|+|+++++++++|+ +++++
T Consensus       270 ~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~-~g~~~  345 (505)
T 3nyq_A          270 ALAGARLLVSGSAALPVHDHERIAAATG-RRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEE-DGTPI  345 (505)
T ss_dssp             HHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC------CC
T ss_pred             ccccceEEEECCCCCCHHHHHHHHHhcC-CeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECC-CCCCc
Confidence            4678999999999999999999999886 8999999999998766543322  455678999999999999995 78888


Q ss_pred             CC---CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEecc-CCceEeccEEeecCC
Q 026632          165 PP---NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI-KELIKYKGFQVTSNW  235 (235)
Q Consensus       165 ~~---g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~-~d~i~~~G~~v~p~~  235 (235)
                      +.   |+.|||+++||.++.||+++|+.+.+.|..++||+|||+|+++++|++++.||+ ||+||++|++|+|.|
T Consensus       346 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~e  420 (505)
T 3nyq_A          346 AALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE  420 (505)
T ss_dssp             CCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHH
T ss_pred             ccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHH
Confidence            76   899999999999999999999999999988999999999999999999999997 599999999999864

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=4.9e-40  Score=283.48  Aligned_cols=226  Identities=20%  Similarity=0.233  Sum_probs=195.4

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCC---CHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF---DLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      +...+++++++..|++|..++ ..++.++..|+++++.+..   ++..+++.+.++++|++.++|+++..+.........
T Consensus       183 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  261 (521)
T 3l8c_A          183 FDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQA  261 (521)
T ss_dssp             TCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTT
T ss_pred             cCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccc
Confidence            445667999999999999988 6788999999999998764   899999999999999999999999999887766667


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC---CCCCCCcccccCCCcEEEEEeCCCC
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA---GSRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~---~~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      .++++|.++++|+++++++.+.+.+.|+++++++.||+||++.+++......   ......++|+|.++++++++|+ ++
T Consensus       262 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~g  340 (521)
T 3l8c_A          262 KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DG  340 (521)
T ss_dssp             TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECT-TS
T ss_pred             cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECC-Cc
Confidence            7899999999999999999999999998799999999999998765432211   0123457999999999999995 79


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCcccccccc---cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI---DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~---~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++.|+.|||+++||.++.||+++|+.+.+.|   +.++||+|||+|+++++|++++.||+||+||++|++|+|+|
T Consensus       341 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~e  417 (521)
T 3l8c_A          341 KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELED  417 (521)
T ss_dssp             CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHH
T ss_pred             CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHH
Confidence            999999999999999999999999999999887   45789999999999999999999999999999999999864

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.3e-39  Score=285.98  Aligned_cols=225  Identities=25%  Similarity=0.393  Sum_probs=196.8

Q ss_pred             ccCCCCcEEEEecChhHHHhHHH-HHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcC--CC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAV-ITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVK--KF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~-~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~--~~   84 (235)
                      +...++|++++++|++|.+++.. .++.++..|+++++.+..++..+++.++++++|++.++|+++..+.+.....  ..
T Consensus       220 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  299 (617)
T 3rg2_A          220 CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRA  299 (617)
T ss_dssp             HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTT
T ss_pred             cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccc
Confidence            45567899999999999998854 5889999999999999889999999999999999999999999888754332  23


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccC-CCcEEEEEeCCCCcc
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALA-PGVEALIVSVDTQKP  163 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~-~~~~~~~~d~~~~~~  163 (235)
                      .++++|.+++||+++++++.+.+.+.++ ++++|.||+||++......... ........|.|. ++.++.++| +++++
T Consensus       300 ~l~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~~~~~~~i~d-~~~~~  376 (617)
T 3rg2_A          300 QLASLKLLQVGGARLSATLAARIPAEIG-CQLQQVFGMAEGLVNYTRLDDS-AEKIIHTQGYPMCPDDEVWVAD-AEGNP  376 (617)
T ss_dssp             TTTTCCEEEEESSCCCHHHHHHHHHHTC-SEEEEEEEETTEEEEECCTTSC-HHHHHHCCCEESCTTCEEEEEC-TTSCB
T ss_pred             cCCCccEEEEcCCcCCHHHHHHHHHHhC-CcEEEEeccCcceeecccCCCc-ccccccCCCccCCCCceEEEEC-CCCCC
Confidence            6889999999999999999999999986 9999999999998654432111 112224678887 788999999 48999


Q ss_pred             CCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|+.|||+|+||.++.||+++|+.+.+.|..++||+|||+|+++++|.+++.||+||+||++|++|+|.|
T Consensus       377 ~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~e  448 (617)
T 3rg2_A          377 LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEE  448 (617)
T ss_dssp             CCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHH
T ss_pred             CCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHH
Confidence            999999999999999999999999999999988999999999999999999999999999999999999864

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.1e-39  Score=275.43  Aligned_cols=214  Identities=26%  Similarity=0.412  Sum_probs=187.9

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLS   87 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~   87 (235)
                      +...++|++++++|++|.+|+ ..++.++..|+++++.+++++..+++.++++++|++.++|+++..|.+......   .
T Consensus       199 ~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~  274 (501)
T 3ipl_A          199 LGFDRDTNWLSVLPIYHISGL-SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---Y  274 (501)
T ss_dssp             TCCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---T
T ss_pred             hCCCccCEEEEeCcHHHHHHH-HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---C
Confidence            445677999999999999999 568899999999999999999999999999999999999999999998765433   2


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.+++||+++++++.+.+.+ + ++++++.||+||+++.+.............++|+|+++++++++|++      .|
T Consensus       275 ~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~  346 (501)
T 3ipl_A          275 NLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KE  346 (501)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SS
T ss_pred             cccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CC
Confidence            8999999999999999999987 4 59999999999998755543322112345679999999999999964      46


Q ss_pred             CceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|||+++|+.++.||+++++.+.. + .+|||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       347 ~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e  412 (501)
T 3ipl_A          347 GHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQ  412 (501)
T ss_dssp             CCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHH
T ss_pred             CccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHH
Confidence            7799999999999999999999887 5 7899999999999999999999999999999999999863

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=6.5e-39  Score=275.76  Aligned_cols=218  Identities=37%  Similarity=0.545  Sum_probs=175.4

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDL   86 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l   86 (235)
                      .+...++|++++++|++|.+|+...+...+..|+++++ .++++..+++.++++++|++.++|+++..+++..  ....+
T Consensus       195 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l  271 (509)
T 3ivr_A          195 AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA-AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQL  271 (509)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-SSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGG
T ss_pred             hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-cccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccch
Confidence            34566789999999999999995544445555555544 5889999999999999999999999999998876  33457


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPP  166 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~  166 (235)
                      +++|.++.+|++   ++.+.+.+.++++++++.||+||+++++......   .....+|+|+++++++++|+ ++++++.
T Consensus       272 ~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~-~~~~~~~  344 (509)
T 3ivr_A          272 ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDA-EDRPLPP  344 (509)
T ss_dssp             TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECT-TSCBCCT
T ss_pred             hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECC-CCCCCCC
Confidence            899999999987   8889999999779999999999999876654432   12234899999999999995 6999999


Q ss_pred             CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEecc--CCceEeccEEeecCC
Q 026632          167 NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRI--KELIKYKGFQVTSNW  235 (235)
Q Consensus       167 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~--~d~i~~~G~~v~p~~  235 (235)
                      |+.|||+++||.++.||+++|+.+.+.| .+|||+|||+|+++++|++++.||+  ||+||++|++|+|.|
T Consensus       345 g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~e  414 (509)
T 3ivr_A          345 GEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE  414 (509)
T ss_dssp             TCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC-----------------
T ss_pred             CCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHH
Confidence            9999999999999999999999999999 6899999999999999999999999  999999999999975

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=9.9e-39  Score=277.63  Aligned_cols=217  Identities=19%  Similarity=0.222  Sum_probs=188.9

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCC
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKF   84 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~   84 (235)
                      +...++|++++++|++|..++ ..++.+++.|+++++.+.   +++..+++.++++++|++.++|+++..+.+.      
T Consensus       218 ~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------  290 (563)
T 1amu_A          218 LNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------  290 (563)
T ss_dssp             SCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------
T ss_pred             cCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------
Confidence            445677999999999999998 577889999999999875   6899999999999999999999988766432      


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC-CCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA-GSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                      .++++|.+++||+++++++.+.+.+.   +++++.||+||++.++....... ......++|+|+++++++++|+ ++++
T Consensus       291 ~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~-~~~~  366 (563)
T 1amu_A          291 RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDE-NLQL  366 (563)
T ss_dssp             TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECT-TSCB
T ss_pred             ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECC-CcCC
Confidence            36789999999999999999998764   78999999999997666543221 1234567999999999999994 8999


Q ss_pred             CCCCCceEEEEEcCcccccccCCcccccccccC------CCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK------KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~------~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++.|+.|||+++||.++.||+++|+.+.+.|..      ++||+|||+|+++++|++++.||+||+||++|++|+|.|
T Consensus       367 ~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~e  444 (563)
T 1amu_A          367 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE  444 (563)
T ss_dssp             CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred             CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHH
Confidence            999999999999999999999999999888732      469999999999999999999999999999999999864

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6.3e-40  Score=286.63  Aligned_cols=226  Identities=27%  Similarity=0.347  Sum_probs=193.1

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCC----CHHHHHHHHHhccceEEeecHHHHHHHHhcC---
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKHG---   79 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~---   79 (235)
                      .+...++|++++++|++|.+|+...++.+++.|+++++.+++    ++..+++.++++++|++.++|+++..+.+..   
T Consensus       202 ~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~  281 (590)
T 3kxw_A          202 SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE  281 (590)
T ss_dssp             HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG
T ss_pred             hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh
Confidence            345667899999999999999966689999999999998865    7899999999999999999999999887753   


Q ss_pred             CcCCCCCCCceEEEecccCCcHHHHHHHHHhCC-----CCceeccccccccccccccccCCC------------------
Q 026632           80 LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFA------------------  136 (235)
Q Consensus        80 ~~~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~i~~~yG~tE~g~~~~~~~~~~------------------  136 (235)
                      ......++++|.++.||+++++++.+++.+.|+     +.++++.||+||++.+++......                  
T Consensus       282 ~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (590)
T 3kxw_A          282 KKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVH  361 (590)
T ss_dssp             GGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCC
T ss_pred             hccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCcee
Confidence            334557899999999999999999999999874     357999999999998766432110                  


Q ss_pred             -------CCCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccC------CC--eEe
Q 026632          137 -------GSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDK------KG--WVH  201 (235)
Q Consensus       137 -------~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~------~g--~~~  201 (235)
                             ......++|+|+++  ++++|++++++++.|+.|||+|+||.++.||+++|+.+.+.|..      +|  ||+
T Consensus       362 ~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~  439 (590)
T 3kxw_A          362 FADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLR  439 (590)
T ss_dssp             BCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEE
T ss_pred             eccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEe
Confidence                   01123467899988  88899877999999999999999999999999999999988843      24  999


Q ss_pred             cCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          202 TGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       202 TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |||+|+++ +|.+++.||+||+||++|++|+|.|
T Consensus       440 TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~e  472 (590)
T 3kxw_A          440 TGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQD  472 (590)
T ss_dssp             EEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHH
T ss_pred             cCcEEEEE-CCEEEEEcCccceEEECCEecCHHH
Confidence            99999998 9999999999999999999999864

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6.8e-38  Score=272.40  Aligned_cols=218  Identities=18%  Similarity=0.222  Sum_probs=176.0

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCC-HHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFD-LEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~-~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ....+++++..|++|..++ ..++.++..|+++++.+.+. +..+++.++++++|++.++|+++..+...    ...+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~  295 (562)
T 3ite_A          221 LGGVGKFLCLASRAFDVHI-GEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPH  295 (562)
T ss_dssp             CTTTCEEECCSCTTSTHHH-HHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTT
T ss_pred             cCcCceEEEecCchhhhhH-HHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCc
Confidence            4556899999999999887 57788999999999987654 57788999999999999999988877433    235789


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQ  168 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~  168 (235)
                      +|.+++||+++++++.+.+.+.++ +++++.||+||++..+....... .....++|+|+++++++++|++++++++.|+
T Consensus       296 lr~~~~gG~~l~~~~~~~~~~~~~-~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~  373 (562)
T 3ite_A          296 LVYLGVGGEKMTPRTQQIWSSSDR-VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGM  373 (562)
T ss_dssp             CCEEEEESSCCCHHHHHHHTTCSS-CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTS
T ss_pred             eEEEEEecCCCCHHHHHHHhhCCC-cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCC
Confidence            999999999999999999988765 99999999999987666543322 3455689999999999999988899999999


Q ss_pred             ceEEEEEcCcccccccCCcccccccccCCC--eEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          169 LGEIWLRGPNMMRGYYNNEQATKLTIDKKG--WVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       169 ~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g--~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .|||+++||.++.||+++|+.+...+ .+|  ||+|||+|++|++|++++.||+||+||++|++|+|.|
T Consensus       374 ~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~e  441 (562)
T 3ite_A          374 AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGE  441 (562)
T ss_dssp             CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEEEC---------------
T ss_pred             ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHH
Confidence            99999999999999999999888665 455  9999999999999999999999999999999999975

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=6.8e-37  Score=287.65  Aligned_cols=224  Identities=19%  Similarity=0.199  Sum_probs=196.1

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      .+...++|+++++.|++|..+. ..++.++..|+++++.+.   .++..+++.++++++|++.++|+++..+.+...   
T Consensus       641 ~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---  716 (1304)
T 2vsq_A          641 YMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---  716 (1304)
T ss_dssp             SSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---
T ss_pred             hcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---
Confidence            4455677999999999999887 688999999999999874   689999999999999999999999999876532   


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCC--CCCCCCcccccCCCcEEEEEeCCCC
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFA--GSRNIGSAGALAPGVEALIVSVDTQ  161 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~--~~~~~~~~g~p~~~~~~~~~d~~~~  161 (235)
                      ..++++|.+++|||++++++.+.+.+.+++.+++|.||+||++.+++......  .......+|+|++++++.++|+ .+
T Consensus       717 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~  795 (1304)
T 2vsq_A          717 DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNE-QS  795 (1304)
T ss_dssp             HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECT-TS
T ss_pred             hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECC-Cc
Confidence            23578999999999999999999999888789999999999998766543221  1233457899999999999995 78


Q ss_pred             ccCCCCCceEEEEEcCcccccccCCccccccccc------CCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          162 KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID------KKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       162 ~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~------~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      ++++.|+.|||+|+|+.+++||+++|+.|++.|.      .++||+|||+|+++++|.+++.||+||+||++|++|.|.|
T Consensus       796 ~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~e  875 (1304)
T 2vsq_A          796 QLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEE  875 (1304)
T ss_dssp             CBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred             CCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHH
Confidence            9999999999999999999999999999998883      2459999999999999999999999999999999999864

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1e-36  Score=260.11  Aligned_cols=204  Identities=21%  Similarity=0.375  Sum_probs=176.7

Q ss_pred             CcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCC----CHHHHHHHHHhccceEEeecHHHHHHHHhc----CCcCCC
Q 026632           13 DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPPLILALAKH----GLVKKF   84 (235)
Q Consensus        13 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~----~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~----~~~~~~   84 (235)
                      +|++++++|++|.+|+...++.++..|+++++.++.    ++..+++.++++++| +.++|+++..++..    ......
T Consensus       230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~  308 (480)
T 3t5a_A          230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR  308 (480)
T ss_dssp             TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred             CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence            899999999999999877889999999999998753    899999999999999 78889988887763    334456


Q ss_pred             CCCCceEEEecccCCcHHHHHHHHHhCC-----CCceeccccccccccccccccCCCC----------------------
Q 026632           85 DLSSLKLVGSGAAPLGKELMEECAKNVP-----SATVIQGYGLTETSGIATMENSFAG----------------------  137 (235)
Q Consensus        85 ~l~~lr~i~~~G~~~~~~~~~~~~~~~~-----~~~i~~~yG~tE~g~~~~~~~~~~~----------------------  137 (235)
                      .++++|.+++||+++++++.+++++.|+     ++++++.||+||++.+++.......                      
T Consensus       309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  388 (480)
T 3t5a_A          309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG  388 (480)
T ss_dssp             CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred             chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence            7899999999999999999999999984     4589999999999987765432211                      


Q ss_pred             -CCCCCcccccCCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCccccccccc-----------CCCeEecCce
Q 026632          138 -SRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTID-----------KKGWVHTGDL  205 (235)
Q Consensus       138 -~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~-----------~~g~~~TgDl  205 (235)
                       .....++|+|++ .+++++|++++++++.|+.|||+|+||.++.||+++|+.+++.|.           .+|||+|||+
T Consensus       389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDl  467 (480)
T 3t5a_A          389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS  467 (480)
T ss_dssp             SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEE
T ss_pred             CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccce
Confidence             122347899999 999999987899999999999999999999999999999998884           5679999999


Q ss_pred             EEEcCCCcEEEEec
Q 026632          206 GYFDGDGQLYVVDR  219 (235)
Q Consensus       206 ~~~~~~g~~~~~GR  219 (235)
                      |+++ +|+++|.||
T Consensus       468 g~~d-dG~l~~~GR  480 (480)
T 3t5a_A          468 GFVT-DGKMFIIGR  480 (480)
T ss_dssp             EEEE-TTEEEECC-
T ss_pred             eeEE-CCEEEEeCC
Confidence            9996 999999998

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=4.5e-35  Score=247.37  Aligned_cols=208  Identities=17%  Similarity=0.158  Sum_probs=177.2

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC--C
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD--L   86 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~--l   86 (235)
                      ...++|++++++|+.|..+.+..++.++..|+++++.+..++..+++.++++++|+++++|+++..|++........  +
T Consensus       126 ~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  205 (436)
T 3qov_A          126 GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRE  205 (436)
T ss_dssp             TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTS
T ss_pred             CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCccc
Confidence            45677999999999877777678889999999999998889999999999999999999999999998875544433  7


Q ss_pred             CCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccc-cccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           87 SSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGI-ATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        87 ~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~-~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      +++|.+++||+++++++.+.+.+.|+ +++++.||+||+++. ....+..    . ...+.|.+++.++++|++++++++
T Consensus       206 ~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~~----~-~g~~~~~~~~~v~i~d~~~g~~~~  279 (436)
T 3qov_A          206 TTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSFGMTEMNGPGVAFECQE----Q-NGMHFWEDCYLVEIIDPETGEPVP  279 (436)
T ss_dssp             SSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEEEGGGTEEEEEEECTT----C-SSEEECTTTEEEEEECTTTCSBCS
T ss_pred             CCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecCcchhhcCCeeEEecCC----C-CeeEEccCceEEEEEECCCCCCCC
Confidence            89999999999999999999999995 999999999999543 3333211    1 225677789999999988999999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCC------c---EEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG------Q---LYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g------~---~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +|+.|||++++.+            ...+ +++||+|||+++++++|      +   +++.||.||+||++|++|+|.+
T Consensus       280 ~g~~Gel~v~~~~------------~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~e  345 (436)
T 3qov_A          280 EGEIGELVLTTLD------------REMM-PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQ  345 (436)
T ss_dssp             TTCCEEEEEEESS------------CCSS-CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHH
T ss_pred             CCCceEEEEeccC------------cCCc-eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHH
Confidence            9999999999842            2233 78899999999999988      4   6999999999999999999853

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=3.8e-34  Score=241.74  Aligned_cols=209  Identities=19%  Similarity=0.184  Sum_probs=173.4

Q ss_pred             ccCCCCcEEEEecCh-hHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC-
Q 026632            8 TAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD-   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-   85 (235)
                      +...++|++++++|+ +|..++ ..++.++..|+++++.+.++++.+++.++++++|+++++|+++..|++........ 
T Consensus       129 ~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~  207 (437)
T 2y27_A          129 AGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP  207 (437)
T ss_dssp             TTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG
T ss_pred             cCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc
Confidence            345677999999998 677776 56788999999999988889999999999999999999999999998765433333 


Q ss_pred             -CCCceEEEecccCCcHHHHHHHHHhCCCCceecccccccc-ccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           86 -LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        86 -l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~-g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                       ++++|.+++||+++++++.+.+.+.|+ +++++.||+||+ +..+...+..   ... ..+.|.+++.++++|++++++
T Consensus       208 ~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~g~~~~~~~~~---~~~-g~~~~~~~~~~~i~d~~~g~~  282 (437)
T 2y27_A          208 VQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIYGLSEVMGPGVASECVE---TKD-GPTIWEDHFYPEIIDPETGEV  282 (437)
T ss_dssp             GGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEEETTTTEEEEEECCTT---TCS-SCEECTTTEEEEEECTTTCCB
T ss_pred             ccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecCCchhhcCCeeEEecCC---CCC-ceeEccCceEEEEEcCCCCCC
Confidence             478999999999999999999999885 999999999998 4423333221   111 245677899999999878999


Q ss_pred             CCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcC-CCcE-----EEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG-DGQL-----YVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~-~g~~-----~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +++|+.|||++++.            +.+.+ +++||+|||++++++ +|++     ++.||.||+|+++|++|+|.+
T Consensus       283 ~~~g~~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~e  347 (437)
T 2y27_A          283 LPDGELGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQ  347 (437)
T ss_dssp             CCTTCCEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHH
T ss_pred             CCCCCccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHH
Confidence            99999999999983            23334 688999999999998 6885     899999999999999999853

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=6.4e-34  Score=240.78  Aligned_cols=209  Identities=22%  Similarity=0.204  Sum_probs=173.2

Q ss_pred             ccCCCCcEEEEecCh-hHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC-
Q 026632            8 TAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD-   85 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~-   85 (235)
                      +...++|++++++|+ +|..++ ..++.++..|+++++.+.++++.+++.++++++|+++++|+++..|++........ 
T Consensus       131 ~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~  209 (443)
T 2y4o_A          131 AGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP  209 (443)
T ss_dssp             TTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG
T ss_pred             cCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc
Confidence            445677999999998 466666 67888999999999998889999999999999999999999999998765433333 


Q ss_pred             -CCCceEEEecccCCcHHHHHHHHHhCCCCceecccccccc-ccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCcc
Q 026632           86 -LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTET-SGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKP  163 (235)
Q Consensus        86 -l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~-g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~  163 (235)
                       ++++|.+++||+++++++.+.+.+.|+ +++++.||+||+ +..+...+..   ...+ .+.|.+++.++++|++++++
T Consensus       210 ~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG~TE~~g~~~~~~~~~---~~~g-~~~~~~~~~~~i~d~~~g~~  284 (443)
T 2y4o_A          210 AESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIYGLSEVMGPGVACECVE---TKDG-PVIWEDHFYPEIIDPVTGEV  284 (443)
T ss_dssp             GGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEEEETTTTEEEEEEECTT---TCCS-EEECTTTEEEEEECTTTCCB
T ss_pred             ccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEeccCchhhcCCeEEeccCC---CCCc-eEEccCCeEEEEEcCCCCCC
Confidence             479999999999999999999999885 999999999997 4423333221   1112 45567899999999878999


Q ss_pred             CCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCC-CcE-----EEEeccCCceEeccEEeecCC
Q 026632          164 LPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD-GQL-----YVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       164 v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~-g~~-----~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +++|+.|||++++.            +.+.+ +++||+|||+++++++ |++     ++.||.||+||++|++|+|.+
T Consensus       285 ~~~G~~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~e  349 (443)
T 2y4o_A          285 LPDGSQGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQ  349 (443)
T ss_dssp             CCTTCCEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHH
T ss_pred             CCCCCceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHH
Confidence            99999999999973            22334 6789999999999998 986     899999999999999999853

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=2e-33  Score=231.54  Aligned_cols=194  Identities=16%  Similarity=0.195  Sum_probs=160.9

Q ss_pred             eeccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            6 QETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         6 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      ..+...++|++++++|++|.+|+ ..++.++..|+++++.++.  ...++.++++++|++.++|+++..+++..... ..
T Consensus        71 ~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~-~~  146 (358)
T 4gs5_A           71 KALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSATS-GQ  146 (358)
T ss_dssp             HHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTG-GG
T ss_pred             HHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhcccccc-cc
Confidence            34556678999999999999999 5678888889998887642  12366789999999999999999999876543 36


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      ++++|.+++||+++++++.+++++.  ++++++.||+||+++.+......  ....+..|.+.|++.+.+.+        
T Consensus       147 l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~--------  214 (358)
T 4gs5_A          147 VDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVALKALN--GPEASELYVFLPGIQYGVDE--------  214 (358)
T ss_dssp             GGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT--------
T ss_pred             CCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeeccccc--ccccceeeccCCCeEEEecC--------
Confidence            8999999999999999999999874  58999999999999877765544  34457788999998877643        


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                         .||++++++..                .+|||+|||+|++|++| +.+.||+||+||++|++|+|+|
T Consensus       215 ---~Gel~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~e  264 (358)
T 4gs5_A          215 ---RGCLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQ  264 (358)
T ss_dssp             ---TSEEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHH
T ss_pred             ---cCceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEECCEEECHHH
Confidence               39999988632                67899999999999888 6677999999999999999864

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.95  E-value=4.3e-27  Score=194.44  Aligned_cols=199  Identities=16%  Similarity=0.161  Sum_probs=150.2

Q ss_pred             ccCCCCcEEEEecCh-hHHHhHHHHHHHHhhcCcEEEEccCCCHH-----------------------HHHHHHHhccce
Q 026632            8 TAGELDYVFLCVLPL-FHVFGLAVITCGQLQKGSCIILMAKFDLE-----------------------MFLRAIEKHRVT   63 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~-~~~~g~~~~~~~~l~~G~~~v~~~~~~~~-----------------------~~~~~l~~~~~t   63 (235)
                      ....++|++++++|+ +|..|+ ...+.++..|+ +++...+++.                       .+++.++++++|
T Consensus       130 ~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t  207 (369)
T 3hgu_A          130 RPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIR  207 (369)
T ss_dssp             STTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred             hCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCC
Confidence            344667999999999 999998 45566688888 6666667777                       888899999999


Q ss_pred             EEeecHHHHHHHHhcCCcCCCCCCCceEEEecccCCcHHHHHHHH-HhCCCCceeccccccccccccccccCCCCCCCCC
Q 026632           64 HIWVVPPLILALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECA-KNVPSATVIQGYGLTETSGIATMENSFAGSRNIG  142 (235)
Q Consensus        64 ~~~~~p~~~~~l~~~~~~~~~~l~~lr~i~~~G~~~~~~~~~~~~-~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~  142 (235)
                      ++.++|+++..|++........++++|.+++||+++++++.+.+. +.||++++++.||+||+++++..+..       .
T Consensus       208 ~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-------~  280 (369)
T 3hgu_A          208 FLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-------T  280 (369)
T ss_dssp             EEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-------C
T ss_pred             EEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-------c
Confidence            999999999999887543334568999999999999999999999 99977999999999999876643321       1


Q ss_pred             ccccc------CCCcEEEEEeCCCCccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCC--C--
Q 026632          143 SAGAL------APGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGD--G--  212 (235)
Q Consensus       143 ~~g~p------~~~~~~~~~d~~~~~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~--g--  212 (235)
                      ..|+|      .++++++++|+++++++++|+.|||+|++...            ..+  -.+|+|||+++..+.  |  
T Consensus       281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~------------~~~--l~ry~tgD~~~~~~~~~g~~  346 (369)
T 3hgu_A          281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSP------------WAF--YPRVAERDTAIRLPGVSGFA  346 (369)
T ss_dssp             TTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEET------------TEE--EEEEEEEEEEEEECCSTTCS
T ss_pred             cCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCc------------ccc--cccccCCceEEEecCCCCCc
Confidence            36777      89999999998799999999999999987321            111  225999999988543  2  


Q ss_pred             -----cEEEEeccCCceEeccE
Q 026632          213 -----QLYVVDRIKELIKYKGF  229 (235)
Q Consensus       213 -----~~~~~GR~~d~i~~~G~  229 (235)
                           -+...+|.++..++.|.
T Consensus       347 ~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          347 GDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             SCEEEEEEECC-----------
T ss_pred             CcccccceeccccCCCceeeec
Confidence                 14556677777777664

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.66  E-value=2.9e-08  Score=85.44  Aligned_cols=122  Identities=13%  Similarity=0.135  Sum_probs=79.0

Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCcee-ccccccccccccccccCCCCCCCCCccc-ccC-CCcEEEEEeCCCC----
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAG-ALA-PGVEALIVSVDTQ----  161 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g-~p~-~~~~~~~~d~~~~----  161 (235)
                      +..++.||-   ..-.+.++..+|+..+. ..|++||.. ++.-..+   ...+...+ ..+ ..+..+.++.++.    
T Consensus       302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p---~~~~~~~~~~L~~~~~ffEFip~~~~~~~~  374 (581)
T 4eql_A          302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDP---LCKPEDVSYTFMPNMSYFEFIPMDGGDKND  374 (581)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCT---TSCGGGCCEEECTTSSEEEEEECSTTCCSS
T ss_pred             EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCC---CCCcccCceeecCCcEEEEEEeccccCCCc
Confidence            656677774   33334454555667777 999999953 3321111   11111111 112 2256777764321    


Q ss_pred             ----ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcC----CCcEEEEeccCCceEeccEEeec
Q 026632          162 ----KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       162 ----~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~----~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                          ..|+.|+.+||++++..   |.|              .|++||+.++..    ..++.+.||.++++++.|+|+++
T Consensus       375 ~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~  437 (581)
T 4eql_A          375 VVDLEDVKLGCTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNE  437 (581)
T ss_dssp             CEEGGGCCTTCEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEH
T ss_pred             EeCHHHcCCCceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCH
Confidence                35679999999999853   223              299999999864    46799999999999999999987


Q ss_pred             C
Q 026632          234 N  234 (235)
Q Consensus       234 ~  234 (235)
                      +
T Consensus       438 ~  438 (581)
T 4eql_A          438 E  438 (581)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.60  E-value=4e-08  Score=84.78  Aligned_cols=125  Identities=13%  Similarity=0.109  Sum_probs=80.0

Q ss_pred             CCC---ceEEEecccCCcHHHHHHHHHhCCCCcee-ccccccccccccccccCCCCCCCCCccc-ccC-CCcEEEEEeCC
Q 026632           86 LSS---LKLVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSAG-ALA-PGVEALIVSVD  159 (235)
Q Consensus        86 l~~---lr~i~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~g~~~~~~~~~~~~~~~~~~g-~p~-~~~~~~~~d~~  159 (235)
                      -++   +..++.||-   ..-.+.++..+++..++ ..|++||.. ++.-..+   ...+...+ ..+ ..+..+.++.+
T Consensus       301 WPnlk~l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p---~~~p~~~~~~L~p~~~ffEFIP~~  373 (609)
T 4b2g_A          301 WPNTKYLDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNP---MSKPSEVSYTIMPNMAYFEFLPHE  373 (609)
T ss_dssp             STTCCEEEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCT---TSCGGGCCEEECTTSCEEEEEEGG
T ss_pred             CCCCcEEEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCC---CCCcccCceeecCCcEEEEEEecc
Confidence            356   445666663   33334454555667777 999999974 3332211   11111111 112 22566777543


Q ss_pred             CC---------------ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcC----CCcEEEEecc
Q 026632          160 TQ---------------KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRI  220 (235)
Q Consensus       160 ~~---------------~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~----~g~~~~~GR~  220 (235)
                      +.               ..|+.|+.+||++++..   |+|              .|++||++++..    ..++.+.||.
T Consensus       374 ~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~~~gR~  436 (609)
T 4b2g_A          374 HSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYA---GLY--------------RYRVGDILRVTGFHNSAPQFHFVRRK  436 (609)
T ss_dssp             GTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTT---SCC--------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred             ccccccccCCCCccccHhHcCCCCeEEEehhhhh---hhh--------------heecCCEEEEeecCCCCcEEEEEEec
Confidence            32               35789999999998743   344              299999999863    4689999999


Q ss_pred             CCceEeccEEeecC
Q 026632          221 KELIKYKGFQVTSN  234 (235)
Q Consensus       221 ~d~i~~~G~~v~p~  234 (235)
                      ++++++.|+||+++
T Consensus       437 ~~~l~~~Geki~~~  450 (609)
T 4b2g_A          437 NVLLSIDSDKTDEA  450 (609)
T ss_dssp             TCCBCSSSCCBCHH
T ss_pred             CCeEEccccCCCHH
Confidence            99999999999874

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.51  E-value=1.6e-07  Score=80.72  Aligned_cols=125  Identities=17%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CCCce---EEEecccCCcHHHHHHHHHhCCCCcee-ccccccccccccccccCCCCCCCCCcc-cccCC-CcEEEEEeCC
Q 026632           86 LSSLK---LVGSGAAPLGKELMEECAKNVPSATVI-QGYGLTETSGIATMENSFAGSRNIGSA-GALAP-GVEALIVSVD  159 (235)
Q Consensus        86 l~~lr---~i~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~g~~~~~~~~~~~~~~~~~~-g~p~~-~~~~~~~d~~  159 (235)
                      -+++|   .++.|+-   ..-.+.++..+|+..+. ..|++||.. ++.-..+   ...++.. ...+| ....+.++.+
T Consensus       301 WPnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p---~~~~~~~~~~L~p~~~ffEFiP~~  373 (581)
T 4epl_A          301 FPNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTP---RLSPEEATFAVIPNLGYFEFLPVS  373 (581)
T ss_dssp             CTTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCT---TSCTTTCCEEECTTSCEEEEEEC-
T ss_pred             CCCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceecccee-eeeecCC---CCCccccceeecCCcEEEEEEecc
Confidence            45665   4444433   23334555555667777 999999964 3332211   1111111 11222 2556666533


Q ss_pred             CC----------ccCCCCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcC----CCcEEEEeccCCceE
Q 026632          160 TQ----------KPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDG----DGQLYVVDRIKELIK  225 (235)
Q Consensus       160 ~~----------~~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~----~g~~~~~GR~~d~i~  225 (235)
                      +.          ..|+.|+.+||++++..   |.|              .|++||+.++..    ..++.+.||.+++++
T Consensus       374 ~~~~~~~~~v~l~eve~G~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~  436 (581)
T 4epl_A          374 ETGEGEEKPVGLTQVKIGEEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILS  436 (581)
T ss_dssp             ------CCCEEGGGCCTTCEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred             cccCCCCceeeHHHcCCCCeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence            21          46789999999999853   223              299999999853    257999999999999


Q ss_pred             eccEEeecC
Q 026632          226 YKGFQVTSN  234 (235)
Q Consensus       226 ~~G~~v~p~  234 (235)
                      +.|++++++
T Consensus       437 ~~Ge~~~~~  445 (581)
T 4epl_A          437 INIDKNTER  445 (581)
T ss_dssp             SSSCCBCHH
T ss_pred             eeeeECCHH
Confidence            999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	6e-59
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	4e-47
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-46
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	3e-45
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-26
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-26
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	4e-21

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  194 bits (494), Expect = 6e-59
 Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 13/229 (5%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPP 70
           ++ C   +  V G + +  G L  G+  ++              + ++KH+V  ++  P 
Sbjct: 296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 355

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNV--PSATVIQGYGLTETS 126
            I AL   G   ++  D SSL+++GS   P+  E  E   K +      V+  +  TET 
Sbjct: 356 AIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG 415

Query: 127 GIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRG--PNMMRGYY 184
           G        A     GSA     GV+  +V  +   P      G + +    P   R  +
Sbjct: 416 GFMITPLPGAIELKAGSATRPFFGVQPALVDNEGH-PQEGATEGNLVITDSWPGQARTLF 474

Query: 185 NNEQATKLTIDK--KGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            + +  + T     K    +GD    D DG  ++  R+ +++   G ++
Sbjct: 475 GDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 523

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  162 bits (411), Expect = 4e-47
 Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 14/231 (6%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKF----DLEMFLRAIEKHRVTHIWVVPP 70
           VF     +  + G   +  G L  G   ++        +   +   I++H+VT  +V P 
Sbjct: 283 VFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPT 342

Query: 71  LILALAKHG--LVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSA--TVIQGYGLTETS 126
            +  L + G   ++   L SL+ +GS   P+  E+ E  ++ +      ++  Y  TE+ 
Sbjct: 343 ALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 402

Query: 127 GIATMENSFAGS-RNIGSAGALAPGVEALIVSVDTQKPLPPNQ-LGEIWLRG--PNMMRG 182
                  +   +    GSA     G++A+++  +T + L  +   G + ++   P+  R 
Sbjct: 403 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 183 YYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            + N      T      G+  TGD    D DG ++++ R+ +++   G ++
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRL 513

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  159 bits (402), Expect = 3e-46
 Identities = 94/217 (43%), Positives = 133/217 (61%), Gaps = 3/217 (1%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
             L V+P  H FG+   T G L  G  ++LM +F+ E+FLR+++ +++    +VP L   
Sbjct: 233 AILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSF 291

Query: 75  LAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENS 134
            AK  L+ K+DLS+L  + SG APL KE+ E  AK      + QGYGLTET+    +  +
Sbjct: 292 FAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI--T 349

Query: 135 FAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI 194
             G    G+ G + P  EA +V +DT K L  NQ GE+ +RGP +M GY NN +AT   I
Sbjct: 350 PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALI 409

Query: 195 DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           DK GW+H+GD+ Y+D D   ++VDR+K LIKYKG+QV
Sbjct: 410 DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 446

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  156 bits (394), Expect = 3e-45
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 12/229 (5%)

Query: 13  DYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLI 72
             V L V+P+FHV    +     L     ++   + D    +   +   VT    VP + 
Sbjct: 212 KDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 271

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LALA +       L +L+ +  G +   + L+    +      V QGYGLTETS +    
Sbjct: 272 LALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQN 329

Query: 133 ---------NSFAGSRNIGSAGALAPGVEALIVSVDTQK-PLPPNQLGEIWLRGPNMMRG 182
                    +           G   P V   +   + +  P     LGE+ L+GP +  G
Sbjct: 330 FVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGG 389

Query: 183 YYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
           YY NE+AT+  +   G+  TGD+  +D +G + + DR+K+LIK  G  +
Sbjct: 390 YYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI 438

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  104 bits (261), Expect = 1e-26
 Identities = 40/227 (17%), Positives = 81/227 (35%), Gaps = 21/227 (9%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK--FDLEMFLRAIEKHRVTHIWVVPPLI 72
                  +     +  +    L   S  I++     D   F + I +  +T I + P   
Sbjct: 209 RIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP--- 265

Query: 73  LALAKHGLVKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
                   +    + S++ + +  +     L+ +  + V     I  YG TET+  AT  
Sbjct: 266 ---TYVVHLDPERILSIQTLITAGSATSPSLVNKWKEKVT---YINAYGPTETTICAT-- 317

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSV--DTQKPLPPNQLGEIWLRGPNMMRGYYNNEQAT 190
              A    IG +  +   ++   + +  +  +     + GE+ + G  + RGY+   + T
Sbjct: 318 TWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELT 377

Query: 191 KLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
                       +    TGD   +  DG +  + RI   +K +G +V
Sbjct: 378 SQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV 424

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  102 bits (255), Expect = 8e-26
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 2/199 (1%)

Query: 33  CGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSLKLV 92
            G L  G  ++L      +     IE+ +VT   +VPPL +        ++ DLSSL+++
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303

Query: 93  GSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVE 152
             G A    E            T+ Q +G      +            + + G      +
Sbjct: 304 QVGGAKFSAEAARRVKAVFG-CTLQQVFG-MAEGLVNYTRLDDPEEIIVNTQGKPMSPYD 361

Query: 153 ALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDG 212
              V  D  + + P + G +  RGP  +RGYY  E+    +  + G+  TGD+     DG
Sbjct: 362 ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDG 421

Query: 213 QLYVVDRIKELIKYKGFQV 231
            + V  R K+ I   G +V
Sbjct: 422 YIVVEGRAKDQINRGGEKV 440

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 88.9 bits (219), Expect = 4e-21
 Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 6/219 (2%)

Query: 15  VFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILA 74
           V L ++PL+HV G   +    L      +++ +F     L+ +++ +VT ++  P  + A
Sbjct: 198 VVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA 257

Query: 75  LAKHGL--VKKFDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATME 132
           LA           L SL+ V    A +   ++E   +++P    +  YG TE      M 
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMR 316

Query: 133 NSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQLGEIWLRGPNMMRGYYNNEQATKL 192
               G+    + G  +      I     +      +   I     +   GY N  QAT  
Sbjct: 317 QPKTGTE--MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374

Query: 193 TIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQV 231
            + + GW  T D+  +  +G + ++ R+ ++I   G  +
Sbjct: 375 KL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	99.97
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	99.97
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.95

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=3.6e-40  Score=288.48  Aligned_cols=227  Identities=22%  Similarity=0.287  Sum_probs=199.9

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--   81 (235)
                      +...++|++++.+|++|++|+...++.+|..|+++++.++    +++..+++.++++++|++.++|++++.|++....  
T Consensus       289 ~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~  368 (643)
T d1pg4a_         289 FDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAI  368 (643)
T ss_dssp             TTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGT
T ss_pred             hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhc
Confidence            4556789999999999999997778899999999999764    4889999999999999999999999999877543  


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCC--CCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVP--SATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      ...+++++|.++++|+++++++++++.+.++  ++.+++.||+||+++++..........+.+++|+|+++++++++|+ 
T Consensus       369 ~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~-  447 (643)
T d1pg4a_         369 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDN-  447 (643)
T ss_dssp             TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECT-
T ss_pred             cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECC-
Confidence            3457899999999999999999999999986  4779999999999987765444333556788999999999999995 


Q ss_pred             CCccCCCCCceEEEEEc--CcccccccCCcccccccc--cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          160 TQKPLPPNQLGEIWLRG--PNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       160 ~~~~v~~g~~Gel~v~~--~~~~~~y~~~~~~~~~~~--~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +|++++.|+.|||++++  |+++.+|+++++.+.+.+  ..+|||+|||+|++|++|++++.||+||+||++|++|+|+|
T Consensus       448 ~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~e  527 (643)
T d1pg4a_         448 EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE  527 (643)
T ss_dssp             TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHH
T ss_pred             CCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHH
Confidence            78999999999999999  578899999998877665  35899999999999999999999999999999999999864

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=7.6e-38  Score=268.02  Aligned_cols=223  Identities=42%  Similarity=0.687  Sum_probs=197.5

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCCc
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSSL   89 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~l   89 (235)
                      ..+++++++++|++|..++ ...+..+..++..+.....+....+..+..+++|.+.++|+++..+.+........++++
T Consensus       228 ~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l  306 (541)
T d1lcia_         228 IIPDTAILSVVPFHHGFGM-FTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNL  306 (541)
T ss_dssp             CCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTC
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccc
Confidence            4567999999999999999 566777777888888888899999999999999999999999999999888888889999


Q ss_pred             eEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCCCc
Q 026632           90 KLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPNQL  169 (235)
Q Consensus        90 r~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g~~  169 (235)
                      |.++.||++++++..+++.+.++..++++.||+||+++.++.....  ....+++|+|+|+++++++|++++++++.|+.
T Consensus       307 ~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~  384 (541)
T d1lcia_         307 HEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR  384 (541)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCTTCC
T ss_pred             eEEEecccccccccccccccccCCceeeecCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCCCCe
Confidence            9999999999999999999999867899999999999887765443  55667899999999999999999999999999


Q ss_pred             eEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          170 GEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       170 Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      |||+|+++.++.||+++++.+...+..++||+|||+|+++++|++++.||+||+||++|++|+|.+
T Consensus       385 Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~  450 (541)
T d1lcia_         385 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE  450 (541)
T ss_dssp             EEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHH
T ss_pred             EEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHH
Confidence            999999999999999999988888888999999999999999999999999999999999999853

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.5e-37  Score=262.69  Aligned_cols=224  Identities=29%  Similarity=0.395  Sum_probs=192.2

Q ss_pred             cCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCCCCC
Q 026632            9 AGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFDLSS   88 (235)
Q Consensus         9 ~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~   88 (235)
                      ...+.|++++.+|++|..++...+...+..|.++++.+.+++..+++.+.++++|.+.++|+++..+.+........+++
T Consensus       208 ~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~  287 (534)
T d1v25a_         208 ALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKT  287 (534)
T ss_dssp             CCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSS
T ss_pred             ccccccccccccchhhhccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccccccc
Confidence            34566999999999999999665555555555555556689999999999999999999999999998877777778999


Q ss_pred             ceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCC---------CCCCcccccCCCcEEEEEeCC
Q 026632           89 LKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGS---------RNIGSAGALAPGVEALIVSVD  159 (235)
Q Consensus        89 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~---------~~~~~~g~p~~~~~~~~~d~~  159 (235)
                      +|.++.||+++++++.+++++.  +.++++.||+||+++++.........         .....+|+|+++++++++|+ 
T Consensus       288 lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~-  364 (534)
T d1v25a_         288 LRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADE-  364 (534)
T ss_dssp             CCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECT-
T ss_pred             eeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEECC-
Confidence            9999999999999999999875  47999999999999987754322111         12357899999999999995 


Q ss_pred             CCccCCC--CCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          160 TQKPLPP--NQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       160 ~~~~v~~--g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +++.++.  ++.|||+++||+++.||+++++.+...+..+|||+|||+|+++++|.+++.||+||+||++|++|+|.+
T Consensus       365 ~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~e  442 (534)
T d1v25a_         365 EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD  442 (534)
T ss_dssp             TSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHH
T ss_pred             CCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEEecccccEEEECCEEECHHH
Confidence            6777765  688999999999999999999999999989999999999999999999999999999999999999863

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.5e-37  Score=269.59  Aligned_cols=228  Identities=20%  Similarity=0.327  Sum_probs=196.5

Q ss_pred             ccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC----CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCc--
Q 026632            8 TAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK----FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLV--   81 (235)
Q Consensus         8 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--   81 (235)
                      +...++|++++++|++|++|+...++.++..|+++++.+.    +++..+++.++++++|++.++|+++..|.+....  
T Consensus       276 ~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~  355 (640)
T d1ry2a_         276 FDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI  355 (640)
T ss_dssp             SCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSS
T ss_pred             cCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccccc
Confidence            3456779999999999999987788899999999988764    3889999999999999999999999998876543  


Q ss_pred             CCCCCCCceEEEecccCCcHHHHHHHHHhCCC--CceeccccccccccccccccCC-CCCCCCCcccccCCCcEEEEEeC
Q 026632           82 KKFDLSSLKLVGSGAAPLGKELMEECAKNVPS--ATVIQGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIVSV  158 (235)
Q Consensus        82 ~~~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~~~d~  158 (235)
                      ...+++++|.++++|+++++++.+++.+.++.  ..+++.||+||++......... ....+.+++|.|+++++++++|+
T Consensus       356 ~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~  435 (640)
T d1ry2a_         356 ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDP  435 (640)
T ss_dssp             SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECS
T ss_pred             ccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeC
Confidence            45578999999999999999999999999973  4689999999999866543322 22456678999999999999998


Q ss_pred             CCCccC-CCCCceEEEEEc--CcccccccCCcccccccc--cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeec
Q 026632          159 DTQKPL-PPNQLGEIWLRG--PNMMRGYYNNEQATKLTI--DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTS  233 (235)
Q Consensus       159 ~~~~~v-~~g~~Gel~v~~--~~~~~~y~~~~~~~~~~~--~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p  233 (235)
                      ++++.+ +.+..|||++++  |+++.+|+++++.+.+.+  +.+|||+|||+|++|++|++++.||+||+||++|++|+|
T Consensus       436 ~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p  515 (640)
T d1ry2a_         436 NTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST  515 (640)
T ss_dssp             SSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCH
T ss_pred             CCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECH
Confidence            766555 456679999998  689999999999988877  346999999999999999999999999999999999998


Q ss_pred             CC
Q 026632          234 NW  235 (235)
Q Consensus       234 ~~  235 (235)
                      .|
T Consensus       516 ~e  517 (640)
T d1ry2a_         516 AE  517 (640)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=99.97  E-value=5.4e-31  Score=224.08  Aligned_cols=218  Identities=19%  Similarity=0.220  Sum_probs=183.6

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccC---CCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAK---FDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKK   83 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~   83 (235)
                      ......+|++++..|++|..++ ..++.++..|+++++.+.   .+....++.+..+.++.+...|.....      ...
T Consensus       201 ~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  273 (514)
T d1amua_         201 SLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDP  273 (514)
T ss_dssp             TSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCT
T ss_pred             cccccccccccceecccccccc-ccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccc------ccc
Confidence            4455677999999999999999 577778888888888753   477888999999999999998875332      234


Q ss_pred             CCCCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCC-CCCCCCCcccccCCCcEEEEEeCCCCc
Q 026632           84 FDLSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSF-AGSRNIGSAGALAPGVEALIVSVDTQK  162 (235)
Q Consensus        84 ~~l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~-~~~~~~~~~g~p~~~~~~~~~d~~~~~  162 (235)
                      ..++++|.++.+|+++++++.+++.+   +..+++.||+||++.++...... .........+.+.+...+.+.| ++++
T Consensus       274 ~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~  349 (514)
T d1amua_         274 ERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQ  349 (514)
T ss_dssp             TTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSC
T ss_pred             cccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeec-ccce
Confidence            46789999999999999999887755   47899999999999987654433 2233445778899999999999 5999


Q ss_pred             cCCCCCceEEEEEcCcccccccCCcccccccc------cCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          163 PLPPNQLGEIWLRGPNMMRGYYNNEQATKLTI------DKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       163 ~v~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~------~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +++.|+.|||+|++|.++.||++++..+.+.+      +.++||+|||+|++|++|++++.||+||+|+++|++|+|++
T Consensus       350 ~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~  428 (514)
T d1amua_         350 LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE  428 (514)
T ss_dssp             BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH
T ss_pred             ecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHH
Confidence            99999999999999999999999998877665      34789999999999999999999999999999999999863

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=4.8e-31  Score=225.15  Aligned_cols=227  Identities=24%  Similarity=0.325  Sum_probs=193.9

Q ss_pred             eccCCCCcEEEEecChhHHHhHHHHHHH-HhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCCcCCCC
Q 026632            7 ETAGELDYVFLCVLPLFHVFGLAVITCG-QLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGLVKKFD   85 (235)
Q Consensus         7 ~~~~~~~d~~l~~~p~~~~~g~~~~~~~-~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~   85 (235)
                      .+...++|++++..|++|.+++...++. .+..|.+++..+.+++..++..+.+++++.+..+|+.+..+..........
T Consensus       217 ~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (536)
T d1mdba_         217 VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD  296 (536)
T ss_dssp             HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC
T ss_pred             ccccccccccccccccccccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc
Confidence            3456778999999999999997544444 445578888878899999999999999999999999999888877777778


Q ss_pred             CCCceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCC
Q 026632           86 LSSLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLP  165 (235)
Q Consensus        86 l~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~  165 (235)
                      ++++|.++.||++++++..+++.+.++ ......|+.+|.+......... .....+.+|.|++......++.+++++++
T Consensus       297 ~~~~~~~~~gG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~p~~~~~~~~v~~~~g~~~~  374 (536)
T d1mdba_         297 LSSLQVLQVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTRLDDP-EEIIVNTQGKPMSPYDESRVWDDHDRDVK  374 (536)
T ss_dssp             CTTCCEEEEESSCCCHHHHTTHHHHTC-SEEEEEEECTTSCEEECCTTSC-HHHHHHCCCEESSTTCEEEEECTTSCBCC
T ss_pred             cCcceeEEEeccccccccccchhhccC-ceeeeccccccccccccccccc-cccccCCcccCCCCcceEEEEcCCCCeec
Confidence            899999999999999999999999997 8888888888877655443221 12334578999877666666667999999


Q ss_pred             CCCceEEEEEcCcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          166 PNQLGEIWLRGPNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       166 ~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      .++.|||+++|+.++.||++++..+...+..++||+|||+++++++|++++.||+||+||++|++|+|++
T Consensus       375 ~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~  444 (536)
T d1mdba_         375 PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE  444 (536)
T ss_dssp             TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHH
T ss_pred             ccccceeecCCCccccccccccccccccccccCccccCccccccCCCceecCCCcceEEEECCEEECHHH
Confidence            9999999999999999999999999999889999999999999999999999999999999999999853

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.95  E-value=3.1e-27  Score=199.26  Aligned_cols=221  Identities=20%  Similarity=0.341  Sum_probs=180.7

Q ss_pred             CCCCcEEEEecChhHHHhHHHHHHHHhhcCcEEEEccCCCHHHHHHHHHhccceEEeecHHHHHHHHhcCC--cCCCCCC
Q 026632           10 GELDYVFLCVLPLFHVFGLAVITCGQLQKGSCIILMAKFDLEMFLRAIEKHRVTHIWVVPPLILALAKHGL--VKKFDLS   87 (235)
Q Consensus        10 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~--~~~~~l~   87 (235)
                      ....++++..+|++|..+.....+.+...++++++.+.+++..++..+..++++....+|+.+..+.....  .....++
T Consensus       193 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (503)
T d3cw9a1         193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLD  272 (503)
T ss_dssp             SSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCT
T ss_pred             ccccccccccCccccccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccccccc
Confidence            34558999999999999888888899899999999999999999999999999999999998776655322  2344578


Q ss_pred             CceEEEecccCCcHHHHHHHHHhCCCCceeccccccccccccccccCCCCCCCCCcccccCCCcEEEEEeCCCCccCCCC
Q 026632           88 SLKLVGSGAAPLGKELMEECAKNVPSATVIQGYGLTETSGIATMENSFAGSRNIGSAGALAPGVEALIVSVDTQKPLPPN  167 (235)
Q Consensus        88 ~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~g~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~d~~~~~~v~~g  167 (235)
                      ++|.++.||++++++..+++...++ ..+.+.||+||++..+......  .......+.+.+.... ......++.++.|
T Consensus       273 ~Lr~i~~gG~~~~~~~~~~~~~~~~-~~~~~~yg~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g  348 (503)
T d3cw9a1         273 SLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMRQPK--TGTEMAPGFFSEVRIV-RIGGGVDEIVANG  348 (503)
T ss_dssp             TCCEEEECSSCCCHHHHHHHHHHCC-SEEEEEEEETTTEEEEEEESCS--SSSEEBCCTTCCEEEE-CTTSCTTCBCCTT
T ss_pred             ceEEEEecccccccccccccccccc-ccccccccccccceeeeecccc--ccccccccccccceee-eeecccCcccCCC
Confidence            9999999999999999999999986 8899999999999877655433  2222222333333333 3334688899999


Q ss_pred             CceEEEEEc-CcccccccCCcccccccccCCCeEecCceEEEcCCCcEEEEeccCCceEeccEEeecCC
Q 026632          168 QLGEIWLRG-PNMMRGYYNNEQATKLTIDKKGWVHTGDLGYFDGDGQLYVVDRIKELIKYKGFQVTSNW  235 (235)
Q Consensus       168 ~~Gel~v~~-~~~~~~y~~~~~~~~~~~~~~g~~~TgDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~  235 (235)
                      +.|++++.+ +....+|++++..+.+.+ .+|||+|||+|+++++|.+++.||+||+||++|++|+|++
T Consensus       349 ~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~  416 (503)
T d3cw9a1         349 EEGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE  416 (503)
T ss_dssp             CCEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHH
T ss_pred             ccccccccccccccccccCChhhhHHHh-cCCceecccccccccCCeEEeCCCcCCeEEECCEEECHHH
Confidence            999887776 566677888888888877 7899999999999999999999999999999999999853