Citrus Sinensis ID: 026635

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLLETKL
ccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccc
HHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHEccccccccccHHcc
MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKyeevsvpvVGDLILISDKAYTRKEVLEMESLMLNTLqfnmsvptpYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGfkqwsktcqwhsgysedQLLECATLMIGFHQKAATGKLTGVHRkyctskfgyisksepaqflLETKL
MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYeevsvpvvgdlILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKaatgkltgVHRKYCTSkfgyisksepaqflletkl
MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFlsqqqvvrkklqlvglvAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLaaaaiyaaQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLLETKL
*******NEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYIS*************
**QQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLL****
MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLLETKL
***QFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLL****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLLETKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query235 2.2.26 [Sep-21-2011]
P46277428 G2/mitotic-specific cycli N/A no 1.0 0.549 0.8 1e-115
P46278434 G2/mitotic-specific cycli N/A no 0.995 0.539 0.760 1e-109
P30278328 G2/mitotic-specific cycli N/A no 0.995 0.713 0.760 1e-109
Q01J96423 Cyclin-B2-1 OS=Oryza sati N/A no 0.991 0.550 0.725 1e-100
Q7XSJ6420 Cyclin-B2-1 OS=Oryza sati yes no 0.991 0.554 0.725 1e-100
Q9LDM4429 Cyclin-B2-3 OS=Arabidopsi yes no 0.982 0.538 0.722 1e-100
Q0D9C7419 Cyclin-B2-2 OS=Oryza sati no no 0.991 0.556 0.716 1e-100
A2YH60419 Cyclin-B2-2 OS=Oryza sati N/A no 0.991 0.556 0.716 1e-100
Q9SFW6431 Cyclin-B2-4 OS=Arabidopsi no no 0.982 0.535 0.728 3e-98
Q39068429 Cyclin-B2-1 OS=Arabidopsi no no 0.982 0.538 0.718 4e-92
>sp|P46277|CCNB1_MEDSV G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function desciption
 Score =  412 bits (1060), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/235 (80%), Positives = 215/235 (91%)

Query: 1   MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLV 60
           M QQFDINE+MRAIL+DWLIEVHDKFDLM ETLFL++NLIDRFL +Q VVRKKLQLVGLV
Sbjct: 194 MAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLV 253

Query: 61  AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFL 120
           AMLLACKYEEVSVPVVGDLILISD+AYTRKEVLEME +M+N L+FN+SVPT YVF++RFL
Sbjct: 254 AMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNALKFNISVPTAYVFMRRFL 313

Query: 121 KAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS 180
           KAAQ+D+KL+LL+FFLIELSLVEY MLKF+PS LAAAA+Y AQCT+YG KQWSKTC+WH+
Sbjct: 314 KAAQADRKLELLAFFLIELSLVEYAMLKFSPSQLAAAAVYTAQCTMYGVKQWSKTCEWHT 373

Query: 181 GYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLLETKL 235
            YSEDQLLEC++LM+ FH+KA TGKLTG HRKYCTSKF Y +K EPA FLLE +L
Sbjct: 374 NYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFSYTAKCEPASFLLENEL 428
Essential for the control of the cell cycle at the G2/M (mitosis) transition.
Medicago sativa subsp. varia (taxid: 36902)
>sp|P46278|CCNB2_MEDSV G2/mitotic-specific cyclin-2 OS=Medicago sativa subsp. varia PE=2 SV=1 Back     alignment and function description
>sp|P30278|CCNB2_MEDSA G2/mitotic-specific cyclin-2 (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|Q01J96|CCB21_ORYSI Cyclin-B2-1 OS=Oryza sativa subsp. indica GN=CYCB2-1 PE=1 SV=1 Back     alignment and function description
>sp|Q7XSJ6|CCB21_ORYSJ Cyclin-B2-1 OS=Oryza sativa subsp. japonica GN=CYCB2-1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LDM4|CCB23_ARATH Cyclin-B2-3 OS=Arabidopsis thaliana GN=CYCB2-3 PE=2 SV=2 Back     alignment and function description
>sp|Q0D9C7|CCB22_ORYSJ Cyclin-B2-2 OS=Oryza sativa subsp. japonica GN=CYCB2-2 PE=1 SV=1 Back     alignment and function description
>sp|A2YH60|CCB22_ORYSI Cyclin-B2-2 OS=Oryza sativa subsp. indica GN=CYCB2-2 PE=1 SV=2 Back     alignment and function description
>sp|Q9SFW6|CCB24_ARATH Cyclin-B2-4 OS=Arabidopsis thaliana GN=CYCB2-4 PE=2 SV=2 Back     alignment and function description
>sp|Q39068|CCB21_ARATH Cyclin-B2-1 OS=Arabidopsis thaliana GN=CYCB2-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
255561387 432 cyclin B, putative [Ricinus communis] gi 0.995 0.541 0.867 1e-118
356538377 433 PREDICTED: G2/mitotic-specific cyclin-1- 1.0 0.542 0.834 1e-116
356496569 432 PREDICTED: G2/mitotic-specific cyclin-1- 1.0 0.543 0.825 1e-115
224084058 427 predicted protein [Populus trichocarpa] 0.978 0.538 0.860 1e-114
1168893 428 RecName: Full=G2/mitotic-specific cyclin 1.0 0.549 0.8 1e-113
780267 428 B-like cyclin [Medicago sativa subsp. x 1.0 0.549 0.8 1e-113
449434436 444 PREDICTED: G2/mitotic-specific cyclin-1- 0.995 0.527 0.821 1e-112
449491261 439 PREDICTED: G2/mitotic-specific cyclin-1- 0.995 0.533 0.821 1e-112
357484071 428 G2/mitotic-specific cyclin-1 [Medicago t 0.995 0.546 0.794 1e-111
290578970 446 B2-type cyclin [Malus x domestica] 0.995 0.524 0.816 1e-108
>gi|255561387|ref|XP_002521704.1| cyclin B, putative [Ricinus communis] gi|223539095|gb|EEF40691.1| cyclin B, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/234 (86%), Positives = 218/234 (93%)

Query: 1   MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLV 60
           M QQFDINEKMRAILIDWLIEVHDKFDLM ETLFL++NLIDRFLSQQ VVRKKLQLVGLV
Sbjct: 198 MAQQFDINEKMRAILIDWLIEVHDKFDLMKETLFLTVNLIDRFLSQQTVVRKKLQLVGLV 257

Query: 61  AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFL 120
           AMLLACKYEEVSVPVVGDLILISDKAY R+EVLEME LMLN LQFNMS PTPYVF+QRFL
Sbjct: 258 AMLLACKYEEVSVPVVGDLILISDKAYNREEVLEMEKLMLNKLQFNMSFPTPYVFMQRFL 317

Query: 121 KAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS 180
           KAAQSDKK+++LSFF+IELSLVEYEMLKF PSLLAAAAIY AQCTIYGFKQW++TC+WHS
Sbjct: 318 KAAQSDKKIEMLSFFIIELSLVEYEMLKFPPSLLAAAAIYTAQCTIYGFKQWNRTCEWHS 377

Query: 181 GYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLLETK 234
            YSEDQLLEC+ LM+GFHQKA TGKLTGVHRKY TSKFG+ SK EPA FLLET+
Sbjct: 378 NYSEDQLLECSRLMVGFHQKAGTGKLTGVHRKYNTSKFGHTSKCEPACFLLETQ 431

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356538377|ref|XP_003537680.1| PREDICTED: G2/mitotic-specific cyclin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356496569|ref|XP_003517139.1| PREDICTED: G2/mitotic-specific cyclin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224084058|ref|XP_002307205.1| predicted protein [Populus trichocarpa] gi|222856654|gb|EEE94201.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1168893|sp|P46277.1|CCNB1_MEDVA RecName: Full=G2/mitotic-specific cyclin-1; AltName: Full=B-like cyclin; AltName: Full=CycMs1 gi|914861|emb|CAA57559.1| cycMs1 [Medicago sativa subsp. x varia] Back     alignment and taxonomy information
>gi|780267|emb|CAA55272.1| B-like cyclin [Medicago sativa subsp. x varia] Back     alignment and taxonomy information
>gi|449434436|ref|XP_004135002.1| PREDICTED: G2/mitotic-specific cyclin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449491261|ref|XP_004158843.1| PREDICTED: G2/mitotic-specific cyclin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357484071|ref|XP_003612322.1| G2/mitotic-specific cyclin-1 [Medicago truncatula] gi|355513657|gb|AES95280.1| G2/mitotic-specific cyclin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|290578970|gb|ADD51363.1| B2-type cyclin [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
TAIR|locus:2030482429 CYCB2;3 "Cyclin B2;3" [Arabido 0.982 0.538 0.649 3e-78
TAIR|locus:2127948429 CYCB2;2 "Cyclin B2;2" [Arabido 0.982 0.538 0.642 7.9e-78
TAIR|locus:2014574431 CYCB2;4 "CYCLIN B2;4" [Arabido 0.982 0.535 0.659 2.1e-77
TAIR|locus:2057243429 CYCB2;1 "Cyclin B2;1" [Arabido 0.982 0.538 0.640 2.7e-77
TAIR|locus:2030457265 AT1G20590 [Arabidopsis thalian 0.731 0.649 0.639 8.6e-56
TAIR|locus:2080717414 CYCB1;3 "CYCLIN B1;3" [Arabido 0.991 0.562 0.416 1.6e-47
TAIR|locus:2160722445 CYC1BAT [Arabidopsis thaliana 0.970 0.512 0.390 1.4e-46
TAIR|locus:2043818387 CYCB1;4 "Cyclin B1;4" [Arabido 0.910 0.552 0.425 8.1e-44
DICTYBASE|DDB_G0275493436 cycB "G2/M-specific cyclinB" [ 0.961 0.518 0.396 3.2e-42
TAIR|locus:2126377428 CYCB1;1 "CYCLIN B1;1" [Arabido 0.978 0.537 0.361 7.8e-39
TAIR|locus:2030482 CYCB2;3 "Cyclin B2;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 150/231 (64%), Positives = 181/231 (78%)

Query:     1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
             M  Q D+NE+MR ILIDWLIEVH KF+LM ETL+L+IN+IDRF                 
Sbjct:   199 MDNQQDLNERMRGILIDWLIEVHYKFELMEETLYLTINVIDRFLAVHQIVRKKLQLVGVT 258

Query:    61 AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFL 120
             A+LLACKYEEVSVPVV DLILISDKAY+R+EVL+ME LM NTLQFN S+PTPYVF++RFL
Sbjct:   259 ALLLACKYEEVSVPVVDDLILISDKAYSRREVLDMEKLMANTLQFNFSLPTPYVFMKRFL 318

Query:   121 KAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQWHS 180
             KAAQSDKKL++LSFF+IEL LVEYEML++ PS L        QCT+ GF++WSKTC++H+
Sbjct:   319 KAAQSDKKLEILSFFMIELCLVEYEMLEYLPSKLAASAIYTAQCTLKGFEEWSKTCEFHT 378

Query:   181 GYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFLL 231
             GY+E QLL CA  M+ FH KA TGKLTGVHRKY TSKF + +++EPA FL+
Sbjct:   379 GYNEKQLLACARKMVAFHHKAGTGKLTGVHRKYNTSKFCHAARTEPAGFLI 429
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=IEA;ISS
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2127948 CYCB2;2 "Cyclin B2;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014574 CYCB2;4 "CYCLIN B2;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057243 CYCB2;1 "Cyclin B2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030457 AT1G20590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080717 CYCB1;3 "CYCLIN B1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160722 CYC1BAT [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043818 CYCB1;4 "Cyclin B1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275493 cycB "G2/M-specific cyclinB" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2126377 CYCB1;1 "CYCLIN B1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P30278CCNB2_MEDSANo assigned EC number0.76060.99570.7134N/Ano
Q9LDM4CCB23_ARATHNo assigned EC number0.72290.98290.5384yesno
Q7XSJ6CCB21_ORYSJNo assigned EC number0.72530.99140.5547yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 5e-57
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 1e-52
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 2e-44
cd0004388 cd00043, CYCLIN, Cyclin box fold 9e-22
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 8e-19
cd0004388 cd00043, CYCLIN, Cyclin box fold 2e-16
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 5e-16
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 3e-09
TIGR00569305 TIGR00569, ccl1, cyclin ccl1 0.002
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score =  186 bits (475), Expect = 5e-57
 Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 1   MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLV 60
           + +Q      MR+IL+DWL+EVH KF L+ ETLFL+IN+IDRFLS + V  +K QLVG+ 
Sbjct: 202 LIKQSLYEWSMRSILVDWLVEVHGKFGLLPETLFLAINIIDRFLSSRVVSLEKYQLVGIS 261

Query: 61  AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFL 120
           A+ +A KYEEV+ P + DL+  +D A+TR +++  E  ML  L FN+S P+P  F++R  
Sbjct: 262 ALFIASKYEEVNCPSIKDLVYATDGAFTRDDIIRAERYMLEVLDFNISWPSPMSFLRRIS 321

Query: 121 KAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQWHS 180
           KA+  D   +  + F  E+S V+Y+ ++ +PS  AAAA+Y ++  I    QW +T   +S
Sbjct: 322 KASDYDIFSRTPAKFSSEISPVDYKFIQISPSWCAAAAMYLSR-KILSQNQWDRTLIHYS 380

Query: 181 G-YSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYIS 222
           G Y+   L           Q   +     +  KY +  FG  S
Sbjct: 381 GNYTNPDLKPLNESNKENLQN-PSVHHDAIFPKYPSPTFGKAS 422

Length = 440
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 100.0
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
TIGR00569305 ccl1 cyclin ccl1. University). 99.94
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.93
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.92
KOG0835 367 consensus Cyclin L [General function prediction on 99.9
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.9
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.89
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.85
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.83
KOG1597308 consensus Transcription initiation factor TFIIB [T 99.7
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.65
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.6
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.57
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.54
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.0
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.96
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.76
KOG1598 521 consensus Transcription initiation factor TFIIIB, 98.4
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.38
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.14
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.79
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.47
KOG1674218 consensus Cyclin [General function prediction only 96.3
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 95.75
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 95.71
KOG1675343 consensus Predicted cyclin [General function predi 94.29
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 94.15
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 93.76
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 90.78
KOG1597308 consensus Transcription initiation factor TFIIB [T 89.81
TIGR00569 305 ccl1 cyclin ccl1. University). 88.95
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 88.01
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-38  Score=277.77  Aligned_cols=222  Identities=51%  Similarity=0.774  Sum_probs=207.6

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHH-HhhhccccccccHhhHH
Q 026635            2 TQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAML-LACKYEEVSVPVVGDLI   80 (235)
Q Consensus         2 ~~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~-IA~K~ee~~~~~~~~l~   80 (235)
                      .+|++++.+||..+++|+.+++..|++..+|+++||+++|||++..++++.++||+|++||+ ||||+||..+|.+.+++
T Consensus       148 ~~~~e~~~~mR~iLvdwlvevh~~F~L~~ETL~LaVnliDRfL~~~~v~~~~lqLvgvsalf~IA~K~EE~~~P~v~dlv  227 (391)
T KOG0653|consen  148 ISQSEIRAKMRAILVDWLVEVHEKFGLSPETLYLAVNLIDRFLSKVKVPLKKLQLVGVSALLSIACKYEEISLPSVEDLV  227 (391)
T ss_pred             cccccccHHHHHHHHHHHHHhhhhcCcCHHHHHHHHHHHHHHHHHhcccHHHhhHHhHHHHHHHHHhhhhccCCccceeE
Confidence            47899999999999999999999999999999999999999999999999999999999966 99999999999999999


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhccCCCHHHHHHHHHH
Q 026635           81 LISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDKKLQLLSFFLIELSLVEYEMLKFTPSLLAAAAIY  160 (235)
Q Consensus        81 ~~~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~~ps~iA~a~l~  160 (235)
                      .++++.|+.++|.+||+.||++|+|+++.|+|+.|++++......+.+...++.++++++++|+.++.++||.+|+|+.+
T Consensus       228 ~isd~~~s~~~il~mE~~il~~L~f~l~~p~~~~FLrr~~ka~~~d~~~~~~~k~~~El~l~d~~~~~~~~s~~aaa~~~  307 (391)
T KOG0653|consen  228 LITDGAYSREEILRMEKYILNVLEFDLSVPTPLSFLRRFLKAADYDIKTRTLVKYLLELSLCDYSMLSIPPSSSAAASFT  307 (391)
T ss_pred             eeeCCccchHHHHHHHHHHHhccCeeecCCchHHHHHHHHHhhhcchhHHHHHHHHHHHHHhhhHHhccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhhc-CCCChhH-HHHhhCCCCCCcccc
Q 026635          161 AAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKA-ATGKLTG-VHRKYCTSKFGYISK  223 (235)
Q Consensus       161 la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~-~~~~~~~-i~~ky~~~~~~~vs~  223 (235)
                      +++........|...+..++|+...++.+|.+.+..+.... .++.... +++||.+++++.++.
T Consensus       308 ~~~~~~~~~~~w~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ky~~~~~~~~~~  372 (391)
T KOG0653|consen  308 LALRMLSKGDVWSPTLEHYSGYSESYLFECARSLSALSLSSLQNPSLRASVLNKYNSSKFLPASP  372 (391)
T ss_pred             HHHHHhccCCccCCCCeeccCCCcHHHHHHHHHHHHHHHHhcccchhHHHHHHHhcccccchhhh
Confidence            99988776557999999999999999999999999955443 3334454 999999999999984

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1675 consensus Predicted cyclin [General function prediction only] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 6e-33
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 7e-33
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 7e-33
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-32
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 2e-32
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 2e-32
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 2e-32
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 2e-32
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 2e-32
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 2e-32
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 2e-32
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 2e-32
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-32
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-32
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 2e-32
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-32
1vin_A268 Bovine Cyclin A3 Length = 268 2e-32
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 2e-32
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 3e-32
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 6e-32
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 6e-30
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 3e-29
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 7e-09
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-05
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 2e-05
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 2e-05
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
Query: 1   MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFXXXXXXXXXXXXXXXXX 60
           M +Q DI   MRAIL+DWL+EV +++ L +ETL L++N IDRF                 
Sbjct: 29  MKRQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 88
Query: 61  AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFI-QRF 119
           AMLLA K+EE+  P V + + I+D  Y++K+VL ME L+L  L F+++ PT   F+ Q F
Sbjct: 89  AMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAAPTVNQFLTQYF 148
Query: 120 LKAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLXXXXXXXXQCTIYGFKQWSKTCQW 178
           L    ++ K++ L+ FL ELSL++ +  LK+ PSL+          T+ G + W ++   
Sbjct: 149 LHLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLALYTVTG-QSWPESLAQ 207
Query: 179 HSGYSEDQLLECATLMIGFHQ---KAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
            +GY+ + L  C   ++  HQ   KA       +  KY  SK+  +S   P + L
Sbjct: 208 QTGYTLESLKPC---LVDLHQTYLKAPQHAQQSIREKYKHSKYHSVSLLNPPETL 259
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-108
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 1e-105
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 7e-95
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 4e-94
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 9e-94
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 4e-92
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 2e-88
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-82
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 8e-35
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 3e-18
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 6e-17
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 7e-16
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 8e-16
2ivx_A257 Cyclin-T2; transcription regulation, cell division 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1ais_B200 TFB TFIIB, protein (transcription initiation facto 5e-04
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  310 bits (797), Expect = e-108
 Identities = 91/232 (39%), Positives = 140/232 (60%), Gaps = 3/232 (1%)

Query: 1   MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLV 60
           M +Q DI   MRAIL+DWL+EV +++ L +ETL L++N IDRFLS   V+R KLQLVG  
Sbjct: 28  MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTA 87

Query: 61  AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFL 120
           AMLLA K+EE+  P V + + I+D  YT+K+VL ME L+L  L F+++ PT   F+ ++ 
Sbjct: 88  AMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYF 147

Query: 121 -KAAQSDKKLQLLSFFLIELSLVEYE-MLKFTPSLLAAAAIYAAQCTIYGFKQWSKTCQW 178
                ++ K++ L+ FL ELSL++ +  LK+ PS++A AA + A  T+   + W ++   
Sbjct: 148 LHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTV-TGQSWPESLIR 206

Query: 179 HSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFL 230
            +GY+ + L  C   +   + KA       +  KY  SK+  +S   P + L
Sbjct: 207 KTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL 258
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 100.0
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.97
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.95
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.88
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.75
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.56
1ais_B200 TFB TFIIB, protein (transcription initiation facto 97.98
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.23
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 95.85
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 95.85
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 95.27
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 94.76
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 94.61
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 94.57
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 94.56
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 94.47
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 94.41
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 93.77
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 93.57
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 93.49
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 93.25
2ivx_A257 Cyclin-T2; transcription regulation, cell division 92.61
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 92.34
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 91.31
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 89.0
3m03_A95 ORC6, origin recognition complex subunit 6; helix 88.5
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 87.7
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=1.9e-53  Score=353.82  Aligned_cols=229  Identities=41%  Similarity=0.661  Sum_probs=219.7

Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHH
Q 026635            1 MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLI   80 (235)
Q Consensus         1 ~~~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~   80 (235)
                      |++|++|++.+|..+++||.+++..++++++|+++|++|+|||++..++++.++|++|+||++||||+||..+|++++++
T Consensus        28 ~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~  107 (260)
T 2cch_B           28 MKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFV  107 (260)
T ss_dssp             GGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHcCccccCCChHHHHHHHHHHhCcch-HHHHHHHHHHHHHhcchh-ccCCCHHHHHHHH
Q 026635           81 LISDKAYTRKEVLEMESLMLNTLQFNMSVPTPYVFIQRFLKAAQSDK-KLQLLSFFLIELSLVEYE-MLKFTPSLLAAAA  158 (235)
Q Consensus        81 ~~~~~~~~~~~i~~~E~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~-~~~~~a~~ll~~~l~~~~-~~~~~ps~iA~a~  158 (235)
                      .++++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.+. ++..+|+++++.++.+.. +++|+||.||+||
T Consensus       108 ~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAa  187 (260)
T 2cch_B          108 YITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAA  187 (260)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHH
T ss_pred             HHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999998765 788999999999999999 9999999999999


Q ss_pred             HHHHHHHhcCCCCCchhhhhhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHHhhCCCCCCccccCCCcccc
Q 026635          159 IYAAQCTIYGFKQWSKTCQWHSGYSEDQLLECATLMIGFHQKAATGKLTGVHRKYCTSKFGYISKSEPAQFL  230 (235)
Q Consensus       159 l~la~~~~~~~~~w~~~l~~~t~~~~~~i~~~~~~i~~~~~~~~~~~~~~i~~ky~~~~~~~vs~~~~~~~~  230 (235)
                      +++|+..++. +.|...+..++|+++++|.+|++.|.+++.+....+.++|++||++++|+.||.++||+.+
T Consensus       188 i~lA~~~~~~-~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky~~~~~~~vs~~~~~~~~  258 (260)
T 2cch_B          188 FHLALYTVTG-QSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETL  258 (260)
T ss_dssp             HHHHHHHHHS-CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHHTSGGGTTGGGSCCCSCC
T ss_pred             HHHHHHHhCC-CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHCcccccceeCCCCcccC
Confidence            9999988875 7899999999999999999999999999988887888999999999999999999999865
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 235
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 6e-39
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 4e-37
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 5e-36
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 4e-35
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 2e-34
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 8e-34
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 7e-29
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-23
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 1e-21
d2ivxa2113 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapien 5e-04
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

 Score =  129 bits (325), Expect = 6e-39
 Identities = 28/107 (26%), Positives = 54/107 (50%)

Query: 1   MTQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLV 60
              Q ++    R IL+ W+  + + F+L      LS++++DR+L ++Q  +K LQ +G  
Sbjct: 20  WEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAA 79

Query: 61  AMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMESLMLNTLQFNM 107
            +L+  K   V    V  L  +S   +T  E++  E  +L  L+++ 
Sbjct: 80  CVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDT 126
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.97
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.97
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.97
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.97
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.96
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.92
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.87
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.82
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.96
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.85
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.84
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.73
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.72
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.65
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.6
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.56
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.28
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.2
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 98.19
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.18
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.87
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 95.78
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 95.27
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 95.06
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 94.46
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 94.37
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 93.51
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 93.17
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 92.74
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 91.84
d1bu2a2102 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 85.03
d1f5qb2106 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 84.28
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 83.54
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Herpesvirus saimiri [TaxId: 10381]

Probab=99.97  E-value=1.5e-31  Score=196.42  Aligned_cols=107  Identities=26%  Similarity=0.476  Sum_probs=104.7

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhhccccccchhHHHHHHHHHHHhhhccccccccHhhHHH
Q 026635            2 TQQFDINEKMRAILIDWLIEVHDKFDLMSETLFLSINLIDRFLSQQQVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLIL   81 (235)
Q Consensus         2 ~~q~~i~~~~R~~~v~wm~~~~~~~~l~~~t~~~Av~l~Dr~l~~~~~~~~~l~l~a~tcl~IA~K~ee~~~~~~~~l~~   81 (235)
                      +.|++||+++|..+++||.+++.+++++++|+++||+|+|||++...++++++|++|+||++||+|++|..+|+++++++
T Consensus        21 ~~q~~it~~~R~~lidWl~~v~~~~~l~~eTl~lAv~llDryl~~~~i~~~~lqLi~~tcL~IAsK~ee~~~~~l~~l~~  100 (127)
T d1bu2a1          21 EIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTY  100 (127)
T ss_dssp             TTCSSSCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHSSSSCCCHHHHHH
T ss_pred             hcCCcCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHcCcccc
Q 026635           82 ISDKAYTRKEVLEMESLMLNTLQFNMS  108 (235)
Q Consensus        82 ~~~~~~~~~~i~~~E~~IL~~L~f~l~  108 (235)
                      ++++.|+.+++.+||+.||++|+||+.
T Consensus       101 ~~~~~~t~~ei~~mE~~IL~~L~~dl~  127 (127)
T d1bu2a1         101 LSCDCFTNLELINQEKDILEALKWDTE  127 (127)
T ss_dssp             TTTTSSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999973
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure