Citrus Sinensis ID: 026639

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHccccccccccEEEccccccccccccccEEccccccHHHcccEccHHHHHHHHHcccccccccccHHHcccccHHHHHHcHcHHHHHHHHHHHHHcccHHHHHccccHccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgssngggdEELKRMAELSKTLKEGerilaptrrpdgtlrkpiriragyvpqdevAIYQSKGALLRKELTAlqeappgydpeldakpktksvkRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSaenlshgsastdSLTSQMNELsvsanpvvenplsdakdpgdagapgqdIDKRIRAIKKKIRLSEAQQQKAGqqelkpeqLEKLSKLEGWRNELKLLEEKKADLEAS
Flexible Loop (DISEMBL)
mgssngggdeeLKRMAELSKTlkegerilaptrrpdgtlrkpiriragyvpqdevAIYQSKGALLRKELTAlqeappgydpeldakpktksvkrnerkkekrqqqaalekgkiveklvdGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVEnplsdakdpgdagapgqdiDKRIRAIKKKIRLSEAqqqkagqqelkpeqleklsklegwrNELKlleekkadleas
Low Complexity Region (SEG)
MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVkrnerkkekrqqqaalekGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQdidkriraikkkirLSEAQQQKAGQQELKPEQLEKLSKLEGWRNelklleekkADLEAS
Disordered region (IsUnstruct)
*****************************************PIRIRAGYVPQDEVAIYQSKGALLR*************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*********************************R**GTLRK***************************************************************************************************************************************************************************S**EGWR****************
Disordered Region (DISEMBL)
***********LKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPK********************EKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSD**********GQDIDKRIRAIKKKIR***************PEQLEKLSKLEGWRNELKLLEEKKADLEAS
Disordered Region (DISPRO)
****************ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELD******************************************************************************************GQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKAD****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKxxxxxxxxxxxxxxxxxxxxx
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q6PH11	194	Partner of Y14 and mago O	yes	no	0.731	0.886	0.336	1e-16
A6QPH1	203	Partner of Y14 and mago O	yes	no	0.514	0.596	0.379	5e-11
Q8CHP5	203	Partner of Y14 and mago O	yes	no	0.672	0.778	0.331	2e-10
Q9BRP8	204	Partner of Y14 and mago O	yes	no	0.489	0.563	0.338	9e-10
Q7Q6B5	233	Partner of Y14 and mago O	yes	no	0.310	0.313	0.443	1e-09
Q16LW2	253	Partner of Y14 and mago O	N/A	no	0.314	0.292	0.456	2e-09
B0WII7	238	Partner of Y14 and mago O	N/A	no	0.297	0.294	0.437	3e-09
B5XDD3	202	Partner of Y14 and mago A	N/A	no	0.723	0.841	0.318	7e-09
P82804	207	Partner of Y14 and mago O	yes	no	0.323	0.367	0.464	4e-08
B5XG19	192	Partner of Y14 and mago B	N/A	no	0.455	0.557	0.320	9e-08

>sp|Q6PH11|WIBG_DANRE Partner of Y14 and mago OS=Danio rerio GN=wibg PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 108/214 (50%), Gaps = 42/214 (19%)

Query: 24  EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGY---- 79
           E  + +A T+RPDG+ RKP R+R GYVPQ+EV +Y++K     K   +  E PPG     
Sbjct: 9   ESGKYIAATQRPDGSWRKPRRVRDGYVPQEEVPVYENK---FVKFFKSKPELPPGVCVET 65

Query: 80  DPELDAKPK-----TKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSAENLS 134
            P+   +P      +++ KRN ++KEKR+QQ               E K+E  +  E   
Sbjct: 66  PPQTQTQPSDAAGLSRTAKRNMKRKEKRRQQGQ-------------ETKSEPELQPEPEL 112

Query: 135 HGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEA 194
                   L+ QM +L +SA          ++ PG A     D  +R++ ++KK+R  E 
Sbjct: 113 QPEPEPQGLSQQMQQLELSA----------SQGPGAA-----DSARRLKNLRKKLRQVEE 157

Query: 195 QQQKAGQQELKP--EQLEKLSKLEGWRNELKLLE 226
            QQ+    ELKP  EQL+KL + +  R EL+ LE
Sbjct: 158 LQQRVLSGELKPSQEQLDKLGRAQALREELQQLE 191

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.
Danio rerio (taxid: 7955)

>sp|A6QPH1|WIBG_BOVIN Partner of Y14 and mago OS=Bos taurus GN=WIBG PE=2 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 24/145 (16%)

Query: 15  MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
           MA    T + G + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E
Sbjct: 1   MATPYVTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPE 57

Query: 75  APPGYDPELDA-----KPK------TKSVKRNERKKEKRQQQAALEKG------KIVEKL 117
            PPG  PE  A     +P+      +K+ KRN ++KEKR+QQ   EKG      + +EK+
Sbjct: 58  LPPGLSPEATAPITASRPEGGEPALSKTAKRNLKRKEKRRQQQ--EKGEAEALSRTLEKV 115

Query: 118 VDGEIKTEEVVSAENLSHGSASTDS 142
             GE  T +V SA   S  + +  S
Sbjct: 116 SLGE--TAQVPSAPQASRAAPTAAS 138

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Bos taurus (taxid: 9913)

>sp|Q8CHP5|WIBG_MOUSE Partner of Y14 and mago OS=Mus musculus GN=Wibg PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 107/205 (52%), Gaps = 47/205 (22%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELD-- 84
           + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG  PE    
Sbjct: 14  KYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPGLSPEATTP 70

Query: 85  ---AKPK------TKSVKRNERKKEKRQQQAALEK---GKIVEKLVDGEIKTEEVVSAEN 132
              ++P+      +K+ KRN ++KEKR+QQ   E     + ++K+  G+  T ++ SA  
Sbjct: 71  VTPSRPEGGETGLSKTAKRNLKRKEKRRQQQEKEAEALSRTLDKVSLGD--TAQIPSA-- 126

Query: 133 LSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLS 192
              G  +T                    PL+ A DP D+ A  +   K+I+ ++KK+R  
Sbjct: 127 -LQGPQAT--------------------PLA-ASDPSDSAATTEKA-KKIKNLRKKLRQV 163

Query: 193 EAQQQKAGQQEL-KP--EQLEKLSK 214
           E  QQ+    E+ +P  EQLEKL++
Sbjct: 164 EELQQRIQAGEVSQPSREQLEKLAR 188

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Mus musculus (taxid: 10090)

>sp|Q9BRP8|WIBG_HUMAN Partner of Y14 and mago OS=Homo sapiens GN=WIBG PE=1 SV=1

 Score = 63.9 bits (154), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 15/130 (11%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDA- 85
           + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG  PE  A 
Sbjct: 14  KYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENK---YVKFFKSKPELPPGLSPEATAP 70

Query: 86  ----KPK------TKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSAENLSH 135
               +P+      +K+ KRN ++KEKR+QQ    + + + + +D ++  EE     +   
Sbjct: 71  VTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLD-KVSLEETAQLPSAPQ 129

Query: 136 GSASTDSLTS 145
           GS +  +  S
Sbjct: 130 GSRAAPTAAS 139

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions. May bind RNA; the relevance of RNA-binding remains unclear in vivo, RNA-binding was detected by PubMed:14968132, while PubMed:19410547 did not detect RNA-binding activity independently of the EJC.

Homo sapiens (taxid: 9606)

>sp|Q7Q6B5|WIBG_ANOGA Partner of Y14 and mago OS=Anopheles gambiae GN=wibg PE=3 SV=4

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 6/79 (7%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
           + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG    K+       PPG  PE+  K
Sbjct: 11  KFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKG----KQFAQKPALPPGLSPEVVQK 66

Query: 87  PKTKSVKRNERKKEKRQQQ 105
            K K  +  ER ++ R++Q
Sbjct: 67  AKEK--RERERLRQAREEQ 83

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Anopheles gambiae (taxid: 7165)

>sp|Q16LW2|WIBG_AEDAE Partner of Y14 and mago OS=Aedes aegypti GN=wibg PE=3 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 7/81 (8%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALL-RKELTALQEAPPGYDPELDA 85
           + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  +K L      PPG  PE+  
Sbjct: 11  KFIPSTQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPLL-----PPGMSPEMAQ 65

Query: 86  KPKTKSVKRNERKKEKRQQQA 106
           K + K  +R +R K++R+  A
Sbjct: 66  KSREKR-EREQRIKQQREADA 85

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Aedes aegypti (taxid: 7159)

>sp|B0WII7|WIBG_CULQU Partner of Y14 and mago OS=Culex quinquefasciatus GN=wibg PE=3 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 10/80 (12%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
           + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  ++ +     PPG  PE+  K
Sbjct: 11  KFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPS----LPPGLPPEMAQK 66

Query: 87  PKTKSVKRNERKKEKRQQQA 106
                  R +R+KE+R+  A
Sbjct: 67  ------AREKREKEQRKAAA 80

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Culex quinquefasciatus (taxid: 7176)

>sp|B5XDD3|WIBGA_SALSA Partner of Y14 and mago A OS=Salmo salar GN=wibga PE=2 SV=1

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 102/220 (46%), Gaps = 50/220 (22%)

Query: 27  RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
           + +A T+RPDGT RKP R++ GY PQ+EV +Y++K     K      + PPG  P   A+
Sbjct: 12  KYIAATQRPDGTWRKPRRVKDGYTPQEEVPVYENK---FVKFFKGKPDLPPGMSPGNAAQ 68

Query: 87  PK----------------TKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSA 130
            +                +K+ KRN ++KEKR+QQ      +++   V      E +  A
Sbjct: 69  ARQQQGIPGIAENEIAGLSKTAKRNMKRKEKRKQQGPDSNVELLTNAV------ETMTFA 122

Query: 131 ENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIR 190
           E+        D++T               NP     DP  A A   +  K+I+ IKKK+R
Sbjct: 123 ED-------GDNVTP------------ASNPAGATYDPSSAIA---EKAKKIKNIKKKLR 160

Query: 191 LSEAQQQKAGQQELK---PEQLEKLSKLEGWRNELKLLEE 227
             E  QQK    E+K    EQ EKL + +  + EL  LEE
Sbjct: 161 QVEELQQKLDSGEIKQATKEQQEKLGRAKALQGELLQLEE 200

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Salmo salar (taxid: 8030)

>sp|P82804|WIBG_DROME Partner of Y14 and mago OS=Drosophila melanogaster GN=wibg PE=1 SV=1

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 8/84 (9%)

Query: 24  EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEA--PPGYDP 81
           EG+ I A T+RPDGT RK  R++ GYVPQ+EV +Y+SKG    K+  A ++A  PPG  P
Sbjct: 9   EGKFIPA-TKRPDGTWRKARRVKDGYVPQEEVPLYESKG----KQFVAQRQAGVPPGMCP 63

Query: 82  ELDAKPKTKSVKRNERKKEKRQQQ 105
            L A+ K K  ++ ER + K+Q++
Sbjct: 64  LLAAESK-KEREKQERTRAKKQEK 86

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Drosophila melanogaster (taxid: 7227)

>sp|B5XG19|WIBGB_SALSA Partner of Y14 and mago B OS=Salmo salar GN=wibgb PE=2 SV=2

 Score = 57.4 bits (137), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 24/131 (18%)

Query: 24  EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPEL 83
           E  + +A T+RPDGT RKP +++ GY PQ+EV +Y++K     K      + PPG  P  
Sbjct: 9   ESGKYIAATQRPDGTWRKPRKVKDGYTPQEEVPVYENK---FVKFFKGKPDLPPGMSPGD 65

Query: 84  DAKPK-----------------TKSVKRNERKKEKRQQQAALEKGKIVEKLVDG-EIKTE 125
           +A+ +                 +K+ KRN ++KEKR+ Q        VE L++  E+ T 
Sbjct: 66  EAQARQQQQGIPGIAESETAGLSKTAKRNMKRKEKRKLQGPDSN---VEALINAVEMPTS 122

Query: 126 EVVSAENLSHG 136
               A N   G
Sbjct: 123 NPAEATNDPSG 133

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Salmo salar (taxid: 8030)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
147782757	234	hypothetical protein VITISV_043015 [Viti	0.987	0.991	0.700	2e-83
225448093	236	PREDICTED: partner of Y14 and mago-like	0.987	0.983	0.700	3e-83
118487739	240	unknown [Populus trichocarpa]	0.961	0.941	0.708	1e-79
255575432	252	protein with unknown function [Ricinus c	0.953	0.888	0.683	4e-78
224058992	204	predicted protein [Populus trichocarpa]	0.868	1.0	0.671	1e-70
449438240	230	PREDICTED: partner of Y14 and mago-like	0.970	0.991	0.622	1e-65
449523984	234	PREDICTED: partner of Y14 and mago-like	0.914	0.918	0.635	2e-62
449452002	216	PREDICTED: partner of Y14 and mago-like	0.906	0.986	0.636	5e-62
297843968	206	partner of Y14-mago [Arabidopsis lyrata	0.876	1.0	0.591	4e-58
356525387	196	PREDICTED: partner of Y14 and mago-like	0.821	0.984	0.585	2e-57

>gi|147782757|emb|CAN63437.1| hypothetical protein VITISV_043015 [Vitis vinifera] gi|298204603|emb|CBI23878.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 164/234 (70%), Positives = 196/234 (83%), Gaps = 2/234 (0%)

Query: 2   GSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 61
           GS    G+EELK++AELSK+LKEGER+LAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK
Sbjct: 3   GSDGREGEEELKQLAELSKSLKEGERLLAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 62

Query: 62  GALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGE 121
           GAL RKE+ A QE PPGYDP  DAKPKTKSVKRNERKKEKR Q AAL+KGK +E++VDGE
Sbjct: 63  GALWRKEM-ASQEGPPGYDPPTDAKPKTKSVKRNERKKEKRLQ-AALDKGKNLEQMVDGE 120

Query: 122 IKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKR 181
           +  + V+SAE+++HGS   +S+ SQMNEL+V+ NP    P S++ +  + G    DIDKR
Sbjct: 121 VNQDGVLSAEDVNHGSEFVESVASQMNELTVTENPTTVTPPSESIECLNPGGAAPDIDKR 180

Query: 182 IRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 235
           IRA+KKKIRL+EAQQQKA QQE+KPEQL+K+ KLEGW+ ELKLLE+KKA+L AS
Sbjct: 181 IRALKKKIRLTEAQQQKASQQEMKPEQLDKMMKLEGWQKELKLLEDKKAELAAS 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448093|ref|XP_002276574.1| PREDICTED: partner of Y14 and mago-like [Vitis vinifera]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 164/234 (70%), Positives = 196/234 (83%), Gaps = 2/234 (0%)

Query: 2   GSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 61
           GS    G+EELK++AELSK+LKEGER+LAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK
Sbjct: 5   GSDGREGEEELKQLAELSKSLKEGERLLAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSK 64

Query: 62  GALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGE 121
           GAL RKE+ A QE PPGYDP  DAKPKTKSVKRNERKKEKR Q AAL+KGK +E++VDGE
Sbjct: 65  GALWRKEM-ASQEGPPGYDPPTDAKPKTKSVKRNERKKEKRLQ-AALDKGKNLEQMVDGE 122

Query: 122 IKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKR 181
           +  + V+SAE+++HGS   +S+ SQMNEL+V+ NP    P S++ +  + G    DIDKR
Sbjct: 123 VNQDGVLSAEDVNHGSEFVESVASQMNELTVTENPTTVTPPSESIECLNPGGAAPDIDKR 182

Query: 182 IRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 235
           IRA+KKKIRL+EAQQQKA QQE+KPEQL+K+ KLEGW+ ELKLLE+KKA+L AS
Sbjct: 183 IRALKKKIRLTEAQQQKASQQEMKPEQLDKMMKLEGWQKELKLLEDKKAELAAS 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487739|gb|ABK95693.1| unknown [Populus trichocarpa]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/230 (70%), Positives = 184/230 (80%), Gaps = 4/230 (1%)

Query: 6   GGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALL 65
           GGGDEELK M E+SKTLKEGERI+AP+RRPDGTLRKPIRIRAGYVPQDEVAIYQSKGAL 
Sbjct: 14  GGGDEELKEMTEISKTLKEGERIVAPSRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALW 73

Query: 66  RKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTE 125
           RKE+ + QE PPGYD +   KPKTKSVKRNERKKEKR Q AALEKGK  E + DG +  +
Sbjct: 74  RKEMQS-QEVPPGYDTDPHTKPKTKSVKRNERKKEKRHQ-AALEKGKNTEAIEDGNM-VK 130

Query: 126 EVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAI 185
             +  E+L H S S  SLTSQMNEL+VS+NP V  P SD  D  +  +P QDIDKRIRA+
Sbjct: 131 GALPDEDLGHASDSVKSLTSQMNELAVSSNPAVVGPSSDLADASNMESPVQDIDKRIRAL 190

Query: 186 KKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 235
           KKKIRL+EAQQQK   Q++ PEQLEKL+KLEGWR ELKLLE KKA+ EAS
Sbjct: 191 KKKIRLAEAQQQKTSSQDMNPEQLEKLAKLEGWRQELKLLEGKKAE-EAS 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575432|ref|XP_002528618.1| protein with unknown function [Ricinus communis] gi|223531963|gb|EEF33776.1| protein with unknown function [Ricinus communis]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 158/231 (68%), Positives = 186/231 (80%), Gaps = 7/231 (3%)

Query: 1   MGSSNGGG----DEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVA 56
           M ++N GG    +E++K+MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVA
Sbjct: 1   MATNNNGGGGREEEQIKKMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVA 60

Query: 57  IYQSKGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEK 116
           IYQS+GAL +KE+ +L   PPGYDP +DAKPKTKSVKRNERKKEKR  QAALEKGK ++ 
Sbjct: 61  IYQSRGALWKKEMQSLHVVPPGYDPGMDAKPKTKSVKRNERKKEKR-LQAALEKGKNLDA 119

Query: 117 LVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQ 176
              G++K  EV+  E++ H S S  SLTSQMNEL VSANPV+  P  D+ +  D  A  Q
Sbjct: 120 SAAGDMK-REVLPDEDVGHASESVKSLTSQMNELDVSANPVLSIP-GDSTETLDPNASSQ 177

Query: 177 DIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEE 227
           DIDKRIRA+KKKIR +EAQQQKA  Q++KPEQLEKL+KLEGW  ELK+LE+
Sbjct: 178 DIDKRIRALKKKIRQAEAQQQKATSQDMKPEQLEKLAKLEGWHQELKILED 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058992|ref|XP_002299675.1| predicted protein [Populus trichocarpa] gi|222846933|gb|EEE84480.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 145/216 (67%), Positives = 166/216 (76%), Gaps = 12/216 (5%)

Query: 15  MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
           M E+SKTLKEGERI+AP+RRPDGTLRKPIRIRAGYVPQDEVAIYQSKGAL RKE+ + QE
Sbjct: 1   MTEISKTLKEGERIVAPSRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALWRKEMQS-QE 59

Query: 75  APPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSAENLS 134
            PPGYD +   KPKTKSVKRNERKKEKR Q  ++E G +V+            +  E+L 
Sbjct: 60  VPPGYDTDPHTKPKTKSVKRNERKKEKRHQ-VSIEDGNMVKG----------ALPDEDLG 108

Query: 135 HGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEA 194
           H S S  SLTSQMNEL+VS+NP V  P SD  D  +  +P QDIDKRIRA+KKKIRL+EA
Sbjct: 109 HASDSVKSLTSQMNELAVSSNPAVVAPSSDLADASNMESPVQDIDKRIRALKKKIRLAEA 168

Query: 195 QQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKA 230
           QQQK   Q++ PEQLEKL+KLEGWR ELKLLE KKA
Sbjct: 169 QQQKTSSQDMNPEQLEKLAKLEGWRQELKLLEGKKA 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438240|ref|XP_004136897.1| PREDICTED: partner of Y14 and mago-like [Cucumis sativus]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/236 (62%), Positives = 175/236 (74%), Gaps = 8/236 (3%)

Query: 1   MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQS 60
           MGSS+GGG++  K+M ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQ+EVAIYQS
Sbjct: 1   MGSSDGGGEDLCKQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQS 60

Query: 61  KGALLRKELTALQEAPPGYD-PELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVD 119
           KGAL +KE+ A  + PPGY+ P  D K KTKS KRNERKKEKR  QAA EK K++E++V 
Sbjct: 61  KGALWKKEM-ASHDGPPGYEPPTTDVKTKTKSAKRNERKKEKR-LQAAHEKDKVLEQVVV 118

Query: 120 GEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDID 179
            EI   +    +N         SL+SQMNEL+VS N  VE+P S+  D  D   P  D+D
Sbjct: 119 EEITEAKEAYVDNRLE---PIQSLSSQMNELAVSTNLKVESPSSEPID--DPQLPSSDLD 173

Query: 180 KRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 235
           KRIRA KKKIR++EAQ QK   Q++KPEQ  KLSKLE WR+EL LLEE++  L +S
Sbjct: 174 KRIRATKKKIRMAEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRLKLNSS 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523984|ref|XP_004169003.1| PREDICTED: partner of Y14 and mago-like [Cucumis sativus]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 143/225 (63%), Positives = 168/225 (74%), Gaps = 10/225 (4%)

Query: 13  KRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTAL 72
           K+M ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQ+EVAIYQSKGAL +KE+ + 
Sbjct: 17  KQMTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEMASH 76

Query: 73  QEAPPGYD-PELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEI-KTEEVVSA 130
            E PPGYD P  D K KTKS KRNERKKEKR  QAA EK K++E++V  EI + +E   A
Sbjct: 77  DE-PPGYDSPTTDVKTKTKSAKRNERKKEKR-LQAAHEKDKVLEQVVVEEITEPKEAYVA 134

Query: 131 ENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIR 190
             L        SL+SQMNEL+VS N  VE+P S+  D  D   P  D+DKRIRA KKKIR
Sbjct: 135 NRLE----PIQSLSSQMNELAVSTNLKVESPSSEPID--DPQLPSSDLDKRIRATKKKIR 188

Query: 191 LSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 235
           ++EAQ QK   Q++KPEQ  KLSKLE WR+EL LLEE++ +L +S
Sbjct: 189 MAEAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRVNLNSS 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452002|ref|XP_004143749.1| PREDICTED: partner of Y14 and mago-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 166/223 (74%), Gaps = 10/223 (4%)

Query: 15  MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
           M ELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQ+EVAIYQSKGAL +KE+ A  +
Sbjct: 1   MTELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQEEVAIYQSKGALWKKEM-ASHD 59

Query: 75  APPGYD-PELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEI-KTEEVVSAEN 132
            PPGYD P  D K KTKS KRNERKKEKR  QAA EK K++E++V  EI + +E   A  
Sbjct: 60  EPPGYDPPTTDVKTKTKSAKRNERKKEKR-LQAAHEKDKVLEQVVVEEITEPKEAYVANR 118

Query: 133 LSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLS 192
           L        SL+SQMNEL+VS N  VE+P S+  D  D   P  D+DKRIRA KKKIR++
Sbjct: 119 LE----PIQSLSSQMNELAVSTNLKVESPSSEPID--DPQLPSSDLDKRIRATKKKIRMA 172

Query: 193 EAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 235
           EAQ QK   Q++KPEQ  KLSKLE WR+EL LLEE++ +L +S
Sbjct: 173 EAQLQKTPLQDMKPEQANKLSKLETWRSELMLLEEQRVNLNSS 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843968|ref|XP_002889865.1| partner of Y14-mago [Arabidopsis lyrata subsp. lyrata] gi|297335707|gb|EFH66124.1| partner of Y14-mago [Arabidopsis lyrata subsp. lyrata]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/230 (59%), Positives = 164/230 (71%), Gaps = 24/230 (10%)

Query: 1   MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQS 60
           MGS+N  G E+ K+MA+LSK+LKEGERIL PTRRPDGTLRKPIRIRAGYVPQDEV  YQS
Sbjct: 1   MGSNNKSG-EQGKQMADLSKSLKEGERILEPTRRPDGTLRKPIRIRAGYVPQDEVVKYQS 59

Query: 61  KGALLRKELTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDG 120
           KG+L++KE+ +  + PPGY+P+   KPKTKS KRNERKKEKR Q  A EKG   E   DG
Sbjct: 60  KGSLMKKEMAS--QGPPGYEPDPAPKPKTKSAKRNERKKEKRLQSTA-EKGNSSE---DG 113

Query: 121 EIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDK 180
                      + S+GS S + L S+M  L VS+N  V     +A +P      G+D++K
Sbjct: 114 -----------SASNGSQSVNVLASEMEALDVSSNNDV---CGEAPNPVTT---GEDVEK 156

Query: 181 RIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKA 230
           RIRA+KKKIRL+EAQQQK   Q+L PEQLEK SKLE WR ELK LE+K+A
Sbjct: 157 RIRALKKKIRLTEAQQQKTASQDLNPEQLEKFSKLEEWRQELKALEDKEA 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525387|ref|XP_003531306.1| PREDICTED: partner of Y14 and mago-like [Glycine max]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/227 (58%), Positives = 161/227 (70%), Gaps = 34/227 (14%)

Query: 9   DEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKE 68
           DE  K++AELSK+LKEGER++ PTRRPDGTLRKPIRIRAGY PQDEVAIYQ KGALL+KE
Sbjct: 4   DERKKQIAELSKSLKEGERLVGPTRRPDGTLRKPIRIRAGYTPQDEVAIYQPKGALLKKE 63

Query: 69  LTALQEAPPGYDPELDAKPKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVV 128
           + +    PPGY+P+ D+KPKTKSVKRNERKKEKR  QAALEK K V ++ D         
Sbjct: 64  MGSA--GPPGYEPDADSKPKTKSVKRNERKKEKR-IQAALEKEKNVSEVED--------- 111

Query: 129 SAENLSHGSASTDSLTSQMNELSVSANPVVENPLSDAKDPGDAGAPGQDIDKRIRAIKKK 188
                S    S ++LTSQ+N L+V  +P                   QDIDKRIRA+KKK
Sbjct: 112 -----SGKQESLEALTSQVNRLAVQDSP-----------------QAQDIDKRIRALKKK 149

Query: 189 IRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEKKADLEAS 235
           IRL+EA +QK+ +Q+LKPEQLEKL+KLE WR ELKLLE++K +   S
Sbjct: 150 IRLTEALEQKSAEQDLKPEQLEKLAKLEDWRRELKLLEDEKGETTVS 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2200116	204	PYM "partner of Y14-MAGO" [Ara	0.365	0.421	0.670	7.4e-40
ZFIN|ZDB-GENE-040426-1464	194	wibg "within bgcn homolog (Dro	0.531	0.644	0.303	3e-13
UNIPROTKB|A6QPH1	203	WIBG "Partner of Y14 and mago"	0.310	0.359	0.441	2.6e-12
FB|FBgn0034918	207	wibg "within bgcn" [Drosophila	0.285	0.323	0.445	7.1e-12
UNIPROTKB|Q7Q6B5	233	wibg "Partner of Y14 and mago"	0.276	0.278	0.5	4.5e-11
UNIPROTKB|B0WII7	238	wibg "Partner of Y14 and mago"	0.276	0.273	0.485	5.8e-11
UNIPROTKB|B4NSP6	204	wibg "Partner of Y14 and mago"	0.285	0.328	0.432	6.3e-11
MGI|MGI:1925678	203	Wibg "within bgcn homolog (Dro	0.736	0.852	0.310	1.2e-10
UNIPROTKB|Q16LW2	253	wibg "Partner of Y14 and mago"	0.251	0.233	0.492	1.4e-10
UNIPROTKB|Q2F5J3	193	wibg "Partner of Y14 and mago"	0.268	0.326	0.463	2e-10

TAIR|locus:2200116 PYM "partner of Y14-MAGO" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
 Identities = 61/91 (67%), Positives = 73/91 (80%)

Query:     1 MGSSNGGGDEELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQS 60
             MGS +G   E+ KRMAELSK LKEGERIL PTRRPDGTLRKPIRIR GY P+DEV  YQS
Sbjct:     1 MGSRSG---EQGKRMAELSKNLKEGERILEPTRRPDGTLRKPIRIRPGYTPEDEVVKYQS 57

Query:    61 KGALLRKELTALQEAPPGYDPELDAKPKTKS 91
             KG+L++KE+ +  + PPGY+P+   KPKTK+
Sbjct:    58 KGSLMKKEMAS--QGPPGYEPDPAPKPKTKA 86

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

ZFIN|ZDB-GENE-040426-1464 wibg "within bgcn homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 40/132 (30%), Positives = 60/132 (45%)

Query:    24 EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPEL 83
             E  + +A T+RPDG+ RKP R+R GYVPQ+EV +Y++K     K   +  E PPG   E 
Sbjct:     9 ESGKYIAATQRPDGSWRKPRRVRDGYVPQEEVPVYENKFV---KFFKSKPELPPGVCVE- 64

Query:    84 DAKPKTKSVXXXXXXXXXXXXXXXXXXGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSL 143
                P+T++                    K   +    E K+E  +  E           L
Sbjct:    65 -TPPQTQTQPSDAAGLSRTAKRNMKRKEK--RRQQGQETKSEPELQPEPELQPEPEPQGL 121

Query:   144 TSQMNELSVSAN 155
             + QM +L +SA+
Sbjct:   122 SQQMQQLELSAS 133

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA;ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|A6QPH1 WIBG "Partner of Y14 and mago" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 34/77 (44%), Positives = 45/77 (58%)

Query:    15 MAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE 74
             MA    T + G + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E
Sbjct:     1 MATPYVTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPE 57

Query:    75 APPGYDPELDAKPKTKS 91
              PPG  PE  A P T S
Sbjct:    58 LPPGLSPEATA-PITAS 73

GO:0035145 "exon-exon junction complex" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

FB|FBgn0034918 wibg "within bgcn" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
 Identities = 33/74 (44%), Positives = 47/74 (63%)

Query:    18 LSKTLKEGE-RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEA- 75
             +S  L+  E + +  T+RPDGT RK  R++ GYVPQ+EV +Y+SKG    K+  A ++A 
Sbjct:     1 MSTYLQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKG----KQFVAQRQAG 56

Query:    76 -PPGYDPELDAKPK 88
              PPG  P L A+ K
Sbjct:    57 VPPGMCPLLAAESK 70

GO:0005515 "protein binding" evidence=IPI

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

UNIPROTKB|Q7Q6B5 wibg "Partner of Y14 and mago" [Anopheles gambiae (taxid:7165)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 35/70 (50%), Positives = 44/70 (62%)

Query:    21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYD 80
             T  +G+ I A T+RPDGT RKP R+R GYVPQ+EV +Y+SKG    K+       PPG  
Sbjct:     6 TDSQGKFIPA-TQRPDGTWRKPRRVRDGYVPQEEVPLYESKG----KQFAQKPALPPGLS 60

Query:    81 PELDAKPKTK 90
             PE+  K K K
Sbjct:    61 PEVVQKAKEK 70

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|B0WII7 wibg "Partner of Y14 and mago" [Culex quinquefasciatus (taxid:7176)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 34/70 (48%), Positives = 45/70 (64%)

Query:    21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYD 80
             T  +G+ I A T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  ++       PPG  
Sbjct:     6 TDSQGKFIPA-TQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQK----PSLPPGLP 60

Query:    81 PELDAKPKTK 90
             PE+  K + K
Sbjct:    61 PEMAQKAREK 70

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|B4NSP6 wibg "Partner of Y14 and mago" [Drosophila simulans (taxid:7240)]

 Score = 137 (53.3 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
 Identities = 32/74 (43%), Positives = 47/74 (63%)

Query:    18 LSKTLKEGE-RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEA- 75
             +S  L+  E + +  T+RPDGT RK  R++ GYVPQ+EV +Y+SKG    K+  A ++A 
Sbjct:     1 MSTYLQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKG----KQFVAQRQAG 56

Query:    76 -PPGYDPELDAKPK 88
              PPG  P + A+ K
Sbjct:    57 VPPGMCPLVAAESK 70

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

MGI|MGI:1925678 Wibg "within bgcn homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 59/190 (31%), Positives = 83/190 (43%)

Query:    27 RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK 86
             + +A T+RPDGT RK  R++ GYVPQ+EV +Y++K     K   +  E PPG  PE    
Sbjct:    14 KYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPGLSPEATT- 69

Query:    87 PKTKSVXXXXXXXXXXXXXXXXXXGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQ 146
             P T S                    K  EK    + K  E +S   L   S      T+Q
Sbjct:    70 PVTPSRPEGGETGLSKTAKRNL---KRKEKRRQQQEKEAEALS-RTLDKVSLGD---TAQ 122

Query:   147 MNELSVSANPVVENPLSDAKDPGDAGAPGQXXXXXXXXXXXXXXLSEAQQQ-KAGQ-QEL 204
             +   S    P    PL+ A DP D+ A  +              + E QQ+ +AG+  + 
Sbjct:   123 IP--SALQGPQA-TPLA-ASDPSDSAATTEKAKKIKNLRKKLRQVEELQQRIQAGEVSQP 178

Query:   205 KPEQLEKLSK 214
               EQLEKL++
Sbjct:   179 SREQLEKLAR 188

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

GO:0045727 "positive regulation of translation" evidence=ISO

UNIPROTKB|Q16LW2 wibg "Partner of Y14 and mago" [Aedes aegypti (taxid:7159)]

 Score = 150 (57.9 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 32/65 (49%), Positives = 42/65 (64%)

Query:    27 RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALL-RKELTALQEAPPGYDPELDA 85
             + +  T+RPDGT RKP R+R GYVPQ+EV +Y+SKG L  +K L      PPG  PE+  
Sbjct:    11 KFIPSTQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPLL-----PPGMSPEMAQ 65

Query:    86 KPKTK 90
             K + K
Sbjct:    66 KSREK 70

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|Q2F5J3 wibg "Partner of Y14 and mago" [Bombyx mori (taxid:7091)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 32/69 (46%), Positives = 44/69 (63%)

Query:    24 EGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQE--APPGYDP 81
             +G + +  T+RPDGT RKP RI+ GYVPQ+EV +Y+SKG    K+  A Q    P G  P
Sbjct:    12 DGSKFIPATQRPDGTWRKPRRIKEGYVPQEEVPLYESKG----KQFRARQNDGLPVGLTP 67

Query:    82 ELDAKPKTK 90
             E+ A+ + K
Sbjct:    68 EIVAQAQKK 76

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam09282	27	pfam09282, Mago-bind, Mago binding	7e-09

>gnl|CDD|117826 pfam09282, Mago-bind, Mago binding

 Score = 49.5 bits (119), Expect = 7e-09
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 25 GERILAPTRRPDGTLRKPIRIRAGYVP 51
          GERI+  T+RPDG+ RK IR+R GY P
Sbjct: 1  GERIIPETQRPDGSFRKEIRVRPGYTP 27

Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
KOG4325	212	consensus Uncharacterized conserved protein [Funct	100.0
PF09282	27	Mago-bind: Mago binding; InterPro: IPR015362 Membe	99.69
KOG2315	566	consensus Predicted translation initiation factor	99.1
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.05
PF14282	106	FlxA: FlxA-like protein	87.24

>KOG4325 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.9e-43  Score=299.32  Aligned_cols=197  Identities=46%  Similarity=0.624  Sum_probs=159.7

Q ss_pred             HHhhhhhhccccccCCCeeccCccCCCCCcccceecCCCCCCccchhhhhcchHHHHHhhhccCCCCCCCCCcCCCC---
Q 026639           10 EELKRMAELSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEAPPGYDPELDAK---   86 (235)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p~eev~~y~~~~~~~~~~~~~~~~~PPG~~p~~~~k---   86 (235)
                      +..+.||+.+.....|++||.+||||||||||+||||+||+|+|||++|+|++..|++.++.  .+||||+|++.++   
T Consensus         3 aaGkpaAeesgnlkegek~ia~TqRPDGT~RK~~RikeGYtPedEVp~YenK~~kffKek~e--q~PPGlePdaaa~~kp   80 (212)
T KOG4325|consen    3 AAGKPAAEESGNLKEGEKIIAPTQRPDGTLRKPIRIKEGYTPEDEVPKYENKGSKFFKEKAE--QGPPGLEPDAAAKPKP   80 (212)
T ss_pred             ccccchhhhhccccccceeeccccCCCCccccceeccCCCCchhhhhhhhhhhhHHHhhhhh--cCCCCCCCCCCCCCCC
Confidence            46789999999999999999999999999999999999999999999999999999999882  4999999985532   


Q ss_pred             --------ccchhhhhhhHHHHHHHHHHHHhhcchhhhhcccccchhhhhhhhhccCCCCcchhhhhhhhhccccCCCCc
Q 026639           87 --------PKTKSVKRNERKKEKRQQQAALEKGKIVEKLVDGEIKTEEVVSAENLSHGSASTDSLTSQMNELSVSANPVV  158 (235)
Q Consensus        87 --------~~skaakKN~KRKEKrkkq~a~~k~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (235)
                              .+++++|+|.||++++++|+.  ++..   .+++           ..+.++..|.-..+.|..++++.+..+
T Consensus        81 k~~eggEpglsktakRnlKkeek~qaqaE--K~ea---eea~-----------S~sldsqkVnleasa~~~~apqgn~aa  144 (212)
T KOG4325|consen   81 KAAEGGEPGLSKTAKRNLKKEEKLQAQAE--KAEA---EEAG-----------SASLDSQKVNLEASAMEALAPQGNNAA  144 (212)
T ss_pred             CcccCCCccchhHHHhhhhHHHHHHHHHH--hhcc---hhhh-----------ccccCccccchhhhhhhccCcccCccc
Confidence                    368889999999999886653  3331   1111           112334456667777877777777766


Q ss_pred             CCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcHHHHHHHHHHHHHh
Q 026639          159 ENPLSDAKDPGDAGAPGQDIDKRIRAIKKKIRLSEAQQQKAGQQELKPEQLEKLSKLEGWRNELKLLEEK  228 (235)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~e~~KkiRnLkKKLRqIE~Lk~k~~G~~L~~eQleKl~k~~el~~EL~~Le~~  228 (235)
                      |+..    +........++.+||||||+||||+.|+|++++..+.|+++|++|+.+..+|+.|++.||..
T Consensus       145 ~~aA----~d~~dsaa~edkaKkIkaLKKKiR~tEalQQkiaagdln~~qkEkfeKLaerRa~eeaLED~  210 (212)
T KOG4325|consen  145 CGAA----PDPGDSAAGEDKAKKIKALKKKIRLTEALQQKIAAGDLNPEQKEKFEKLAERRAEEEALEDK  210 (212)
T ss_pred             ccCC----CCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5532    11122234679999999999999999999999999999999999999999999999999864

>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin

Probab=99.69  E-value=5.1e-18  Score=105.40  Aligned_cols=27  Identities=63%  Similarity=1.195  Sum_probs=14.0

Q ss_pred             CCeeccCccCCCCCcccceecCCCCCC
Q 026639           25 GERILAPTRRPDGTLRKPIRIRAGYVP   51 (235)
Q Consensus        25 g~~~i~~s~R~DGt~Rk~~rvr~gy~p   51 (235)
                      |++|||+||||||||||+||||+||+|
T Consensus         1 Ger~I~~s~RpDGt~RK~irvr~GY~P   27 (27)
T PF09282_consen    1 GERIIPASQRPDGTWRKEIRVRPGYTP   27 (27)
T ss_dssp             --EEE--EE-TTS-EE--EE--TT---
T ss_pred             CccCcCcccCCCCCcccceeccCCcCC
Confidence            799999999999999999999999998

They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.1e-10  Score=114.48  Aligned_cols=51  Identities=35%  Similarity=0.418  Sum_probs=48.3

Q ss_pred             chHHHHHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHhcHHHHHHHHHHHHH
Q 026639          177 DIDKRIRAIKKKIRLSEAQQ-QKAGQQELKPEQLEKLSKLEGWRNELKLLEE  227 (235)
Q Consensus       177 e~~KkiRnLkKKLRqIE~Lk-~k~~G~~L~~eQleKl~k~~el~~EL~~Le~  227 (235)
                      +.+||||+|.||||.||.|| +...|+.|+++||+||.++..|+.||+.|++
T Consensus       515 ~~ekKir~L~kkLraIe~LK~r~a~Ge~Le~nQl~kIq~E~~~l~ELk~L~~  566 (566)
T KOG2315|consen  515 EEEKKIRSLLKKLRAIEALKERMANGEQLEVNQLNKIQKEPKLLSELKKLGW  566 (566)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHhhhHHHHHHHHhhcC
Confidence            88999999999999999999 6668999999999999999999999999963

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.05  E-value=0.00086  Score=66.44  Aligned_cols=51  Identities=31%  Similarity=0.342  Sum_probs=45.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHH-HHhccCCCCHHHHHHHhcHHHHHHHHHHH
Q 026639          175 GQDIDKRIRAIKKKIRLSEAQQ-QKAGQQELKPEQLEKLSKLEGWRNELKLL  225 (235)
Q Consensus       175 ~~e~~KkiRnLkKKLRqIE~Lk-~k~~G~~L~~eQleKl~k~~el~~EL~~L  225 (235)
                      ....+.|||.|-||||.|+.|+ +...|++|+..|+-||..+.+++.||+.|
T Consensus       507 e~s~e~ki~sl~~~lRaIe~lker~~~~eele~~qv~kietee~VlsElk~l  558 (561)
T COG5354         507 EYSDEDKIRSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKEL  558 (561)
T ss_pred             ccCHHHHHHHHHHHhhhhhcchhhcccccchhhhhhhhhhhHHHHHHHhhhc
Confidence            3344559999999999999999 66689999999999999999999999988

>PF14282 FlxA: FlxA-like protein

Probab=87.24  E-value=6.8  Score=31.10  Aligned_cols=54  Identities=22%  Similarity=0.367  Sum_probs=38.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHh-ccCCCCHHHHHHHhcHHHHHHHHHHHHHhhhhh
Q 026639          177 DIDKRIRAIKKKIRLSEAQQQKA-GQQELKPEQLEKLSKLEGWRNELKLLEEKKADL  232 (235)
Q Consensus       177 e~~KkiRnLkKKLRqIE~Lk~k~-~G~~L~~eQleKl~k~~el~~EL~~Le~~~a~l  232 (235)
                      ..+..|..|++.|..+.+-=..+ ....|++++..  .+...|..+|..|+.+++.|
T Consensus        16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~ql   70 (106)
T PF14282_consen   16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQL   70 (106)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            34788888887776665433333 44778877654  45788999999999887765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	235
1rk8_C	58	Structure Of The Cytosolic Protein Pym Bound To The		1e-06

>pdb|1RK8|C Chain C, Structure Of The Cytosolic Protein Pym Bound To The Mago- Y14 Core Of The Exon Junction Complex Length = 58

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 5/59 (8%)
Query: 18 LSKTLKEGE-RILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKELTALQEA 75
          +S  L+  E + +  T+RPDGT RK  R++ GYVPQ+EV +Y+SKG    K+  A ++A
Sbjct: 1  MSTYLQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKG----KQFVAQRQA 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1rk8_C	58	PYM protein, within the BGCN gene intron protein,	4e-13

>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1 Length = 58

 Score = 61.4 bits (148), Expect = 4e-13
 Identities = 20/46 (43%), Positives = 29/46 (63%)

Query: 23 KEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKE 68
              + +  T+RPDGT RK  R++ GYVPQ+EV +Y+SKG     +
Sbjct: 7  SSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQ 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
1rk8_C	58	PYM protein, within the BGCN gene intron protein,	99.89

>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1

Probab=99.89  E-value=1.1e-24  Score=155.73  Aligned_cols=49  Identities=41%  Similarity=0.742  Sum_probs=29.2

Q ss_pred             cccCCCeeccCccCCCCCcccceecCCCCCCccchhhhhcchHHHHHhh
Q 026639           21 TLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIYQSKGALLRKEL   69 (235)
Q Consensus        21 ~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p~eev~~y~~~~~~~~~~~   69 (235)
                      ...+|++|||+||||||||||+||||+||+|||||++|++++++++++.
T Consensus         5 ~~~~g~~~I~~s~RpDGT~RK~irVr~GY~Pqeev~~Y~~k~~~~~~~r   53 (58)
T 1rk8_C            5 LQSSEGKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQR   53 (58)
T ss_dssp             EEETTEEEECCEECTTSCEECCEECCTTCCC------------------
T ss_pred             EccCCCEEcccccCCCCccccceeccCCcCCHHHhhhhhhhhhHHHHhh
Confidence            3568999999999999999999999999999999999999999665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1rk8c_	33	b.72.3.1 (C:) Pym (Within the bgcn gene intron pro	2e-04

>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
family: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
domain: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 24 EGERILAPTRRPDGTLRKPIRIRAGYVP 51
             + +  T+RPDGT RK  R++ GYVP
Sbjct: 6  SEGKFIPATKRPDGTWRKARRVKDGYVP 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1rk8c_	33	Pym (Within the bgcn gene intron protein, WIBG), N	99.67

>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
family: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
domain: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=5.9e-18  Score=106.04  Aligned_cols=33  Identities=45%  Similarity=0.828  Sum_probs=30.1

Q ss_pred             ccccccCCCeeccCccCCCCCcccceecCCCCCC
Q 026639           18 LSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVP   51 (235)
Q Consensus        18 ~~~~~~~g~~~i~~s~R~DGt~Rk~~rvr~gy~p   51 (235)
                      .|+.+.+| .|||+||||||||||++||++||||
T Consensus         1 tyv~d~~G-~~i~atqRpDGtWRK~rrvk~gyvP   33 (33)
T d1rk8c_           1 TYLQSSEG-KFIPATKRPDGTWRKARRVKDGYVP   33 (33)
T ss_dssp             CCEEETTE-EEECCEECTTSCEECCEECCTTCCC
T ss_pred             CcEecCCC-cEeccccCCCCccccceecccCcCC
Confidence            36777776 8999999999999999999999998