Citrus Sinensis ID: 026650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Secondary Structure (PSIPRED)
cccccccccEEHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEHEHHHHHHHHHHHcccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mrtmgvkgLTLYHLKSHLQKYRLGKQACkettenskdvscvaesqdtgssttsstrmvaqdpndgyqVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSndcqgmvplenikmpSISELAAALEsknastiparigdcsvescltstsspvspmglgsqaaamkkrprplfgngeslplegnmrQEVEWVMPHIG
Flexible Loop (DISEMBL)
mrtmgvkgltlyHLKSHLQKYRLGKQACKEttenskdvscvaesqdtgssttsstrmvaqdpnDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFgngeslplegnmrqevewvmphig
Low Complexity Region (SEG)
MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDtgssttsstRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVaagleaareelselaIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered region (IsUnstruct)
******KGLTLYHLKSHLQKYRLG**********************************************ALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIK***********************************************************************************
Disordered Region (DISOPRED)
****GVKGLTLYHLKSHLQKY***************************************************************************EAQGKYLQSIL********************************************************************************************************************RQEVEWVMPHI*
Disordered Region (DISEMBL)
MRTMGVKGLTLYHLKSHLQKYRLGKQA*******************************AQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESC*********************KRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Disordered Region (DISPRO)
***MGVKGLTLYHLKSHLQKYRLGKQA*************************************GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN************************************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	no	no	0.446	0.293	0.596	3e-30
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.463	0.263	0.440	2e-18

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 83/114 (72%), Gaps = 9/114 (7%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D   +  SS+ M+++
Sbjct: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSR 125

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 114
           + N+         +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L
Sbjct: 126 NMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTL 170

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 9/118 (7%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           ++ +   GLT+YH+KSHLQKYR  +    ET+E         E Q+     TS   + + 
Sbjct: 263 LKLLNNPGLTIYHVKSHLQKYRTARYK-PETSE------VTGEPQEK--KMTSIEDIKSL 313

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA 118
           D     ++T+ALR+QMEVQ+RLHEQLE+QR LQL+IE QG+YLQ + EK  K  ++++
Sbjct: 314 DMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKS 371

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
255554128	303	transcription factor, putative [Ricinus	0.995	0.772	0.846	1e-110
118486035	309	unknown [Populus trichocarpa]	0.995	0.757	0.814	1e-109
327412613	307	putative MYB transcription factor [Rosa	0.991	0.758	0.829	1e-103
224060385	285	predicted protein [Populus trichocarpa]	0.919	0.757	0.838	1e-102
302398985	307	MYBR domain class transcription factor [	1.0	0.765	0.768	6e-99
359477885	307	PREDICTED: uncharacterized protein LOC10	1.0	0.765	0.795	3e-98
224140815	280	predicted protein [Populus trichocarpa]	0.885	0.742	0.829	3e-96
449487536	315	PREDICTED: uncharacterized protein LOC10	0.995	0.742	0.744	2e-89
449432414	315	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.995	0.742	0.740	5e-89
312282911	291	unnamed protein product [Thellungiella h	0.902	0.728	0.676	4e-78

>gi|255554128|ref|XP_002518104.1| transcription factor, putative [Ricinus communis] gi|223542700|gb|EEF44237.1| transcription factor, putative [Ricinus communis]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/235 (84%), Positives = 222/235 (94%), Gaps = 1/235 (0%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MRTMGVKGLTLYHLKSHLQKYRLG+Q+CKE+ ENSKD S VAESQDTGSST++S+RM+AQ
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGRQSCKESNENSKDAS-VAESQDTGSSTSTSSRMIAQ 128

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
           D NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA V
Sbjct: 129 DVNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAAV 188

Query: 121 AAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSV 180
           +AGLEAAREELSELAIKVSN+CQG+VP +N+KMPS+SELA ALESK+ S +PARIGDCSV
Sbjct: 189 SAGLEAAREELSELAIKVSNECQGIVPADNMKMPSLSELAVALESKSTSNLPARIGDCSV 248

Query: 181 ESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG 235
           ESCLTST SPVSPMG+GS  A++KKRPRP+FGNG+SLPLEG+MRQEVEW+M +IG
Sbjct: 249 ESCLTSTGSPVSPMGVGSHTASIKKRPRPIFGNGDSLPLEGSMRQEVEWMMGNIG 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486035|gb|ABK94861.1| unknown [Populus trichocarpa]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/237 (81%), Positives = 214/237 (90%), Gaps = 3/237 (1%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSC---VAESQDTGSSTTSSTRM 57
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKDV     VAESQDTGSST++S+RM
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIAPSVAESQDTGSSTSASSRM 129

Query: 58  VAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQ 117
           +AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYLQSILEKACKALNDQ
Sbjct: 130 IAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILEKACKALNDQ 189

Query: 118 AIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGD 177
           A+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL ++NAS +PARIGD
Sbjct: 190 AVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNRNASNVPARIGD 249

Query: 178 CSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 234
           CSVESCLTSTSSPVSPMG+GSQ A+ KKR RP+ GNG+SLP EGN RQEVEW M +I
Sbjct: 250 CSVESCLTSTSSPVSPMGVGSQVASTKKRSRPVLGNGDSLPFEGNFRQEVEWTMSNI 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412613|emb|CCA29095.1| putative MYB transcription factor [Rosa rugosa] gi|327412625|emb|CCA29101.1| putative MYB transcription factor [Rosa rugosa]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/234 (82%), Positives = 214/234 (91%), Gaps = 1/234 (0%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD SC+AESQDTGSS TSS R++AQ
Sbjct: 74  MRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQDTGSSATSS-RVIAQ 132

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
           D NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA  
Sbjct: 133 DLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAAT 192

Query: 121 AAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSV 180
           AAGLEAA+EELSELAIKVS+DCQGM PL+ IKM S+SE+AAA+E+K+AS + ARIG+CSV
Sbjct: 193 AAGLEAAKEELSELAIKVSSDCQGMAPLDTIKMQSLSEIAAAIENKSASNVLARIGNCSV 252

Query: 181 ESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHI 234
           +SCLTST SP SPMG+ S AAAMKKR RP F NG+SLPLEGNMRQEVEW+M +I
Sbjct: 253 DSCLTSTGSPGSPMGMSSLAAAMKKRQRPFFSNGDSLPLEGNMRQEVEWMMSNI 306

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060385|ref|XP_002300173.1| predicted protein [Populus trichocarpa] gi|222847431|gb|EEE84978.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/217 (83%), Positives = 203/217 (93%), Gaps = 1/217 (0%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKD S VAESQDTGSST++S+RM+AQ
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDAS-VAESQDTGSSTSASSRMIAQ 128

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
           D NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA+ 
Sbjct: 129 DLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAVA 188

Query: 121 AAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSV 180
            AGLEAAREELSELAIKVSN+  G+ PL+ +KMPSISELAAALE+K+AS +PAR+GDCSV
Sbjct: 189 TAGLEAAREELSELAIKVSNERAGIAPLDTMKMPSISELAAALENKHASNVPARVGDCSV 248

Query: 181 ESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESL 217
           ESCLTST SPVSPMG+G+Q A+ KKR RP+FGNG+SL
Sbjct: 249 ESCLTSTGSPVSPMGVGAQVASTKKRSRPVFGNGDSL 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398985|gb|ADL36787.1| MYBR domain class transcription factor [Malus x domestica]

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 183/238 (76%), Positives = 212/238 (89%), Gaps = 3/238 (1%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKD---VSCVAESQDTGSSTTSSTRM 57
           MRTMGVKGLTLYHLKSHLQKYRLGK +CK++ ENSKD    SC+AESQDTGSS+  S+R+
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKLSCKDSAENSKDGIAASCIAESQDTGSSSAVSSRV 129

Query: 58  VAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQ 117
           +AQD NDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQ KYLQSILEKACKALNDQ
Sbjct: 130 IAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQSKYLQSILEKACKALNDQ 189

Query: 118 AIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGD 177
           A  AAG+EAA+EELSELAI+VSNDC+G+VPL++ K+PS+SE+AAALE+++ S + A +G+
Sbjct: 190 AATAAGVEAAKEELSELAIRVSNDCEGIVPLDSTKIPSLSEIAAALENRDVSNVMAHLGN 249

Query: 178 CSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG 235
           CSV+SCLTST SPV PM + S AAAMKKR RP FGNG+SLPLE NMRQEVEW+M +IG
Sbjct: 250 CSVDSCLTSTGSPVLPMDMSSLAAAMKKRQRPFFGNGDSLPLESNMRQEVEWMMSNIG 307

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477885|ref|XP_002268698.2| PREDICTED: uncharacterized protein LOC100250267 [Vitis vinifera]

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/235 (79%), Positives = 207/235 (88%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE T+N K+ SC+AESQDTGSS+TSS+RM+ Q
Sbjct: 73  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKELTDNCKEASCIAESQDTGSSSTSSSRMIPQ 132

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
           D NDGYQVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILEKACKAL DQA  
Sbjct: 133 DLNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACKALKDQAAA 192

Query: 121 AAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSV 180
            AGLEAAREELSEL IKVSNDC+GM PLE IKMP +SE+AAALE+KNA  +PARIGDCSV
Sbjct: 193 TAGLEAAREELSELQIKVSNDCEGMNPLETIKMPCLSEIAAALENKNAVNVPARIGDCSV 252

Query: 181 ESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG 235
           +SCLTS+ SP+SPMG  S+ A MKKR RPLF  G SL LE NMRQ+VEW+M ++G
Sbjct: 253 DSCLTSSGSPISPMGASSRGAVMKKRSRPLFTGGSSLALENNMRQDVEWMMTNMG 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140815|ref|XP_002323774.1| predicted protein [Populus trichocarpa] gi|222866776|gb|EEF03907.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (915), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/211 (82%), Positives = 193/211 (91%), Gaps = 3/211 (1%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSC---VAESQDTGSSTTSSTRM 57
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+CKE+T+NSKDV     VAESQDTGSST++S+RM
Sbjct: 70  MRTMGVKGLTLYHLKSHLQKYRLGKQSCKESTDNSKDVGIAPSVAESQDTGSSTSASSRM 129

Query: 58  VAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQ 117
           +AQD NDGYQVTEALRVQMEVQRRLHEQLEVQ  LQLRIEAQGKYLQSILEKACKALNDQ
Sbjct: 130 IAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILEKACKALNDQ 189

Query: 118 AIVAAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGD 177
           A+  AGLEAAREELSELAIKVSN+C G+ PL+ +KMPS+SELAAAL ++NAS +PARIGD
Sbjct: 190 AVATAGLEAAREELSELAIKVSNECAGIAPLDTMKMPSLSELAAALGNRNASNVPARIGD 249

Query: 178 CSVESCLTSTSSPVSPMGLGSQAAAMKKRPR 208
           CSVESCLTSTSSPVSPMG+GSQ A+ KKR R
Sbjct: 250 CSVESCLTSTSSPVSPMGVGSQVASTKKRSR 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487536|ref|XP_004157675.1| PREDICTED: uncharacterized protein LOC101223852 [Cucumis sativus]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 175/235 (74%), Positives = 204/235 (86%), Gaps = 1/235 (0%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD SC+AESQ+T SS++ S+R++AQ
Sbjct: 82  MRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMAQ 141

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
           D NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILE+AC+AL+DQA  
Sbjct: 142 DLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAA 201

Query: 121 AAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSV 180
           +AGLEAAREELSELAIKVSND + M PLE  K    SELAAALE++ A T+  RIGDCS+
Sbjct: 202 SAGLEAAREELSELAIKVSNDSKEMAPLETQKALPFSELAAALENRKAPTVMPRIGDCSM 261

Query: 181 ESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG 235
           +SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN R +VEW+M +IG
Sbjct: 262 DSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNARHDVEWMMSNIG 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432414|ref|XP_004133994.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213244 [Cucumis sativus]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 174/235 (74%), Positives = 204/235 (86%), Gaps = 1/235 (0%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MRTMGVKGLTLYHLKSHLQKYRLGKQ+ KE+TENSKD SC+AESQ+T SS++ S+R++AQ
Sbjct: 82  MRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMAQ 141

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
           D NDG+QVTEALRVQMEVQRRLHEQLEVQR LQLRIEAQGKYLQSILE+AC+AL+DQA  
Sbjct: 142 DLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAA 201

Query: 121 AAGLEAAREELSELAIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGDCSV 180
           +AGLEAAREELSELAIKVSND + M PLE  K+   SELAAALE++ A T+  RIGDCS+
Sbjct: 202 SAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSM 261

Query: 181 ESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMPHIG 235
           +SCLTS  SPVSP+G+GS A AM KRPRP+F +G+S+ LEGN R +V W+M +IG
Sbjct: 262 DSCLTSAGSPVSPIGVGSTATAM-KRPRPVFSHGDSMALEGNARHDVXWMMSNIG 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282911|dbj|BAJ34321.1| unnamed protein product [Thellungiella halophila]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 161/238 (67%), Positives = 185/238 (77%), Gaps = 26/238 (10%)

Query: 1   MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDTGSSTTSSTRMVAQ 60
           MRTMGVKGLTLYHLKSHLQK+RLG+Q+CKE+TENSKDVSCVAESQDTGSS+TSS R+ AQ
Sbjct: 69  MRTMGVKGLTLYHLKSHLQKFRLGRQSCKESTENSKDVSCVAESQDTGSSSTSSLRLAAQ 128

Query: 61  DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
           + N+ YQVTEALR QMEVQRRLHEQLEVQRRLQLRIEAQGKYLQS+LEKACKA+ +QA+ 
Sbjct: 129 EQNESYQVTEALRAQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSVLEKACKAIEEQAVS 188

Query: 121 AAGLEAAREELSELAIKVSNDC-QGMV-PLENIKM--PSISELAAALESKNASTIPARIG 176
            AGLEAAREELSELAIKVSN C QG     +  KM  PS+SELA A+E KN         
Sbjct: 189 FAGLEAAREELSELAIKVSNGCHQGTTSSFDTTKMRIPSLSELAVAIEHKN--------- 239

Query: 177 DCSVESCLTSTS--SPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMP 232
           +CS ES LTS++  SPVS       AA MKKR R +FGNG+S+ +      E  W++P
Sbjct: 240 NCSAESSLTSSTVGSPVS-------AALMKKRHRGVFGNGDSVVVG----HETGWIIP 286

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.902	0.718	0.578	1.5e-58
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.906	0.714	0.562	4.8e-55
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.842	0.553	0.383	8.2e-28
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.757	0.451	0.415	1.3e-27
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.757	0.442	0.415	2.5e-26
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.782	0.545	0.378	5.3e-24
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.417	0.342	0.550	1.8e-23
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.455	0.455	0.469	1.3e-20
TAIR|locus:2157146	264	AT5G45580 [Arabidopsis thalian	0.485	0.431	0.475	5.7e-20
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.438	0.229	0.491	2.1e-18

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 140/242 (57%), Positives = 163/242 (67%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQ 60
             MRTMGVKGLTLYHLKSHLQK+RLG+Q+CKE+ +NSKDVSCVAESQD         R+ AQ
Sbjct:    69 MRTMGVKGLTLYHLKSHLQKFRLGRQSCKESIDNSKDVSCVAESQDTGSSSTSSLRLAAQ 128

Query:    61 DPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEAQGKYLQSILEKACKALNDQ 117
             + N+ YQVTEALR QMEVQRRLHEQLE   VQRRLQLRIEAQGKYLQSILEKACKA+ +Q
Sbjct:   129 EQNESYQVTEALRAQMEVQRRLHEQLEYTQVQRRLQLRIEAQGKYLQSILEKACKAIEEQ 188

Query:   118 AIVXXXXXXXXXXXXXXXIKVS--NDCQGMVP-LENIKM--PSISELAAALESKNASTIP 172
             A+                IK S  N CQG     +  KM  PS+SELA A+E KN     
Sbjct:   189 AVAFAGLEAAREELSELAIKASITNGCQGTTSTFDTTKMMIPSLSELAVAIEHKN----- 243

Query:   173 ARIGDCSVESCLTSTS--SPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWV 230
                 +CS ES LTS++  SPVS       AA MKKR R +FGNG+S+ + G+   +  WV
Sbjct:   244 ----NCSAESSLTSSTVGSPVS-------AALMKKRQRGVFGNGDSVVV-GH---DAGWV 288

Query:   231 MP 232
             MP
Sbjct:   289 MP 290

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 135/240 (56%), Positives = 156/240 (65%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQ 60
             MRTMGVKGLTLYHLKSHLQK+RLG+QA KE+TENSKD SCV ESQD         RM  Q
Sbjct:    73 MRTMGVKGLTLYHLKSHLQKFRLGRQAGKESTENSKDASCVGESQDTGSSSTSSMRMAQQ 132

Query:    61 DPNDGYQVTEALRVQMEVQRRLHEQLE---VQRRLQLRIEAQGKYLQSILEKACKALNDQ 117
             + N+GYQVTEALR QMEVQRRLH+QLE   VQRRLQLRIEAQGKYLQSILEKACKA ++Q
Sbjct:   133 EQNEGYQVTEALRAQMEVQRRLHDQLEYGQVQRRLQLRIEAQGKYLQSILEKACKAFDEQ 192

Query:   118 AIVXXXXXXXXXXXXXXXIKVSNDCQGM-VPL----ENIKMPSISELAAALESKNASTIP 172
             A                 IKVSN  QG  VP     + + MPS+SELA A+++KN  T  
Sbjct:   193 AATFAGLEAAREELSELAIKVSNSSQGTSVPYFDATKMMMMPSLSELAVAIDNKNNITT- 251

Query:   173 ARIGDCSVESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGNGESLPLEGNMRQEVEWVMP 232
                 +CSVES LTS +      G    AA+MKKR R     G++L     +  E  W+MP
Sbjct:   252 ----NCSVESSLTSITH-----GSSISAASMKKRQR-----GDNL----GVGYESGWIMP 293

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 82/214 (38%), Positives = 112/214 (52%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQ 60
             MR MGVKGLTLYHLKSHLQK+RLGKQ  KE  ++S      A + D          M+++
Sbjct:    66 MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSR 125

Query:    61 DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIV 120
             + N+         +QMEVQRRLHEQLEVQR LQLRIEAQGKY+QSILE+AC+ L  + + 
Sbjct:   126 NMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENMA 176

Query:   121 XXXXXXXXXXXXXXXIKVSNDCQGMVPLEN-IKMPSISELAAALESKNASTIPARIGDCS 179
                            +  S+    + P  + +  P   +L     + +           +
Sbjct:   177 AATAAAAVGGGYKGNLGSSSLSAAVGPPPHPLSFPPFQDLNIYGNTTDQVLDHHNFHHQN 236

Query:   180 VESCLTSTSSPVSPMGLGSQAAAMKKRPRPLFGN 213
             +E+  T  ++  + + LG      KKRP P FGN
Sbjct:   237 IENHFTGNNAADTNIYLG------KKRPNPNFGN 264

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 79/190 (41%), Positives = 100/190 (52%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTE--NSKDVSCVAESQDXXXXXXXXXRM- 57
             M+ MG+ GLTLYHLKSHLQKYRL K    +     N   +  + E +           + 
Sbjct:    77 MKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLS 136

Query:    58 VAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQ 117
             +   PN    + EAL++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQS+LEKA + L  Q
Sbjct:   137 IGPQPNKNSPIGEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQ 196

Query:   118 AIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGD 177
              +                 KVS +     P  +   P   EL      +  +  P    D
Sbjct:   197 NLGAAGIEAAKVQLSELVSKVSAE----YPNSSFLEPK--ELQNLCSQQMQTNYPP---D 247

Query:   178 CSVESCLTST 187
             CS+ESCLTS+
Sbjct:   248 CSLESCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 79/190 (41%), Positives = 100/190 (52%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTE--NSKDV-SCVAESQDXXXXXXXXXRM 57
             M+ MG+ GLTLYHLKSHLQKYRL K    +     N   V + V E+             
Sbjct:    77 MKVMGIPGLTLYHLKSHLQKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLS 136

Query:    58 VAQDPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQ 117
             +   P+    +++AL++Q+EVQRRLHEQLEVQR LQLRIEAQGKYLQSILEKA + L  Q
Sbjct:   137 IGPQPSMNLPISDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQETLGRQ 196

Query:   118 AIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISELAAALESKNASTIPARIGD 177
              +                 KVS D     P  +   P   EL      +   T P    +
Sbjct:   197 NLGAAGIEATKAQLSELVSKVSAD----YPDSSFLEPK--ELQNLHHQQMQKTYPP---N 247

Query:   178 CSVESCLTST 187
              S++SCLTS+
Sbjct:   248 SSLDSCLTSS 257

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 75/198 (37%), Positives = 104/198 (52%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXX----R 56
             M+ M + GLTLYHLKSHLQKYRLGK    +  +N  +VS  +E+Q+              
Sbjct:    66 MKVMEIPGLTLYHLKSHLQKYRLGKSM--KFDDNKLEVSSASENQEVESKNDSRDLRGCS 123

Query:    57 MVAQDPND----GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 112
             +  ++ N     G Q+TEAL++QMEVQ++LHEQ+EVQR LQ++IEAQGKYLQS+L KA +
Sbjct:   124 VTEENSNPAKDRGLQITEALQMQMEVQKKLHEQIEVQRHLQVKIEAQGKYLQSVLMKAQQ 183

Query:   113 ALNDQAIVXXXXXXXXXXXXXXXIKVSNDCQGMVPLENIKMPSISE-LAAALESKNASTI 171
              L   +                   V+  C      E  ++    E      + +N    
Sbjct:   184 TLAGYSSSNLGMDFARTELSRLASMVNRGCPSTSFSELTQVEEEEEGFLWYKKPENRGIS 243

Query:   172 PARIGDCSVESCLTSTSS 189
               R   CSVES LTS+ +
Sbjct:   244 QLR---CSVESSLTSSET 258

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 60/109 (55%), Positives = 76/109 (69%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQ 60
             +R MGV+GLT+YH+KSHLQKYRL K     ++E  K      ES D          +   
Sbjct:    47 LRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSEGKKTDK--KESGDM---------LSGL 95

Query:    61 DPNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 109
             D + G Q+TEAL++QMEVQ+RLHEQLEVQR+LQLRIEAQGKYL+ I+E+
Sbjct:    96 DGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEE 144

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 53/113 (46%), Positives = 73/113 (64%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQ 60
             MR MGVKGLTLYHLKSHLQK+RLGKQ  KE ++N     C+ ++            +   
Sbjct:    55 MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEHSQNHS--ICIRDTNRASMLDLRRNAVFTT 112

Query:    61 DPND-GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 112
              P   G  + E   +QMEVQRR+ E++ ++R++  RI AQGKY++S+LEKAC+
Sbjct:   113 SPLIIGRNMNE---MQMEVQRRIEEEVVIERQVNQRIAAQGKYMESMLEKACE 162

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2157146 AT5G45580 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/120 (47%), Positives = 75/120 (62%)

Query:     1 MRTMGVKGLTLYHLKSHLQKYRLGKQACKET--TENSKD---VSCVAESQDXXXXXXXXX 55
             ++ MG+KGLTLYHLKSHLQKYRLG+Q  K+   TE +K+    S V              
Sbjct:    39 LKLMGLKGLTLYHLKSHLQKYRLGQQQGKKQNRTEQNKENAGSSYVHFDNCSQGGISNDS 98

Query:    56 RMVAQDPNDG-YQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 114
             R        G     EA+R Q++ Q+R  EQLEVQ++LQ+R+EAQGKYL ++LEKA K+L
Sbjct:    99 RFDNHQRQSGNVPFAEAMRHQVDAQQRFQEQLEVQKKLQMRMEAQGKYLLTLLEKAQKSL 158

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 2.1e-18, P = 2.1e-18
 Identities = 55/112 (49%), Positives = 71/112 (63%)

Query:     2 RTMGVKGLTLYHLKSHLQKYRLGKQACKETTENSKDVSCVAESQDXXXXXXXXXRMVAQD 61
             + M V+GLT+YH+KSHLQKYRL K   ++  E   D S   E +          +  A +
Sbjct:   274 KLMNVEGLTIYHVKSHLQKYRLAKYMPEKKEEKRTDNS---EEKKLALS-----KSEADE 325

Query:    62 PNDG-YQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACK 112
                G  Q+TEALR+QMEVQ++LHEQLEVQR LQLRIE   KYL+ +LE+  K
Sbjct:   326 KKKGAIQLTEALRMQMEVQKQLHEQLEVQRVLQLRIEEHAKYLEKMLEEQRK 377

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	1e-24
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-04

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 91.9 bits (229), Expect = 1e-24
 Identities = 42/51 (82%), Positives = 46/51 (90%)

Query: 65  GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN 115
           G Q+TEALR+QMEVQRRLHEQLEVQR LQ+RIEAQGKYLQ ILEKA K L+
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 4  MGVKGLTLYHLKSHLQKYRLGK 25
          M V GLT   + SHLQKYRL +
Sbjct: 36 MVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.95
PLN03162	526	golden-2 like transcription factor; Provisional	98.56
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.81
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	93.83
PF15235	137	GRIN_C: G protein-regulated inducer of neurite out	83.57

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.95  E-value=4.4e-28  Score=171.92  Aligned_cols=51  Identities=88%  Similarity=1.125  Sum_probs=49.1

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026650           65 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN  115 (235)
Q Consensus        65 ~~qI~EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La  115 (235)
                      |++|+||||+||||||||||||||||+||+|||||||||++|||||+++++
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999999999999999874

>PLN03162 golden-2 like transcription factor; Provisional

Probab=98.56  E-value=2.1e-08  Score=96.00  Aligned_cols=26  Identities=46%  Similarity=0.676  Sum_probs=24.3

Q ss_pred             CcccCCCCchHHHHHHHHhhhhhccc
Q 026650            1 MRTMGVKGLTLYHLKSHLQKYRLGKQ   26 (235)
Q Consensus         1 lrlMgV~GLTiyHvKSHLQKYRL~k~   26 (235)
                      |++|+|+|||++||||||||||+.++
T Consensus       266 LelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        266 LELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             HHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            57999999999999999999999775

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.81  E-value=8e-06  Score=58.92  Aligned_cols=23  Identities=57%  Similarity=0.699  Sum_probs=21.2

Q ss_pred             cccCCCCchHHHHHHHHhhhhhc
Q 026650            2 RTMGVKGLTLYHLKSHLQKYRLG   24 (235)
Q Consensus         2 rlMgV~GLTiyHvKSHLQKYRL~   24 (235)
                      .+|++.+||..||+|||||||+.
T Consensus        34 ~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557        34 ELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             HHcCCCCCCHHHHHHHHHHHHcc
Confidence            57999999999999999999974

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=93.83  E-value=0.16  Score=36.62  Aligned_cols=35  Identities=43%  Similarity=0.499  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 026650           80 RRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN  115 (235)
Q Consensus        80 rrLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe~La  115 (235)
                      --|..|+||||+|.=.+|.| |-||.=+|..-+-|.
T Consensus         6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~   40 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQ   40 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHH
Confidence            45788999999999999999 778777766655543

>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus

Probab=83.57  E-value=0.89  Score=38.66  Aligned_cols=19  Identities=21%  Similarity=0.371  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHhHHHHH
Q 026650           87 EVQRRLQLRIEAQGKYLQS  105 (235)
Q Consensus        87 EVQRhLQLRIEAQGKYLQs  105 (235)
                      -||+||+++||.|++....
T Consensus        71 AIQkHLE~qi~e~~~q~~~   89 (137)
T PF15235_consen   71 AIQKHLERQIEEHERQRAP   89 (137)
T ss_pred             HHHHHHHHHHHHhhhcccc
Confidence            4899999999999988754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	5e-07

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 1  MRTMGVKGLTLYHLKSHLQKYRLGKQ 26
          +  M V  LT  ++ SHLQK+R+  +
Sbjct: 36 LDLMNVDKLTRENVASHLQKFRVALK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	98.98

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=98.98  E-value=8e-11  Score=86.08  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=22.8

Q ss_pred             CcccCCCCchHHHHHHHHhhhhhcc
Q 026650            1 MRTMGVKGLTLYHLKSHLQKYRLGK   25 (235)
Q Consensus         1 lrlMgV~GLTiyHvKSHLQKYRL~k   25 (235)
                      |++|||+|||++||||||||||+..
T Consensus        36 l~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A           36 LDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            4689999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	5e-06

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 1  MRTMGVKGLTLYHLKSHLQKYRL 23
          +  M V  LT  ++ SHLQK+R+
Sbjct: 36 LDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	98.54

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.54  E-value=6.4e-09  Score=74.10  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=22.4

Q ss_pred             CcccCCCCchHHHHHHHHhhhhhcc
Q 026650            1 MRTMGVKGLTLYHLKSHLQKYRLGK   25 (235)
Q Consensus         1 lrlMgV~GLTiyHvKSHLQKYRL~k   25 (235)
                      |.+|+|+|||+.||+|||||||+..
T Consensus        36 ~~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_          36 LDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             HHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            3579999999999999999999854