Citrus Sinensis ID: 026668

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFMFYLLLIST
Secondary Structure (PSIPRED)
cccccccccHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEHEEcccccccccEEEEEHHHHHccccccccccccccEEEccccEEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mylkkplwsegvEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVaesdstihffcqsqsvpelqvvpvlfqhsfkedsvderVTSLdhiftvdpmrvtspstDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSlmldssanqldfeACNGIEEVAELIRDKQVDENLRFMFYLLLIST
Flexible Loop (DISEMBL)
mylkkplwsegvEKQMESETETAAATAVGElanslkqqrVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHiftvdpmrvtspSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELirdkqvdeNLRFMFYLLLIST
Low Complexity Region (SEG)
MYLKKPLWSEGVEKQMesetetaaataVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFMFYLLLIST
Disordered region (IsUnstruct)
***************************************VQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFMFYLLLI**
Disordered Region (DISOPRED)
***K*P********************************RVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFK******RVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFMFYLLLIST
Disordered Region (DISEMBL)
MYLKKPLWS**************AATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFMFYLLLIST
Disordered Region (DISPRO)
**************************AVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFMFYLLLIST
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFMFYLLLIST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
302143939	374	unnamed protein product [Vitis vinifera]	0.991	0.622	0.725	1e-92
225455310	298	PREDICTED: uncharacterized protein LOC10	0.991	0.781	0.725	2e-92
449456405	304	PREDICTED: uncharacterized protein LOC10	0.991	0.766	0.703	2e-90
55956221	294	impaired sucrose induction 1-like protei	0.974	0.778	0.704	2e-89
30687718	305	impaired sucrose induction 1 protein [Ar	0.991	0.763	0.663	8e-87
55956223	310	impaired sucrose induction 1-like protei	0.931	0.706	0.717	3e-86
388513219	296	unknown [Lotus japonicus]	0.961	0.763	0.685	1e-85
4469026	324	hypothetical protein [Arabidopsis thalia	0.948	0.688	0.679	3e-85
359806386	301	uncharacterized protein LOC100819127 [Gl	0.982	0.767	0.692	4e-85
363806946	309	uncharacterized protein LOC100808750 [Gl	0.995	0.757	0.668	3e-84

>gi|302143939|emb|CBI23044.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 197/237 (83%), Gaps = 4/237 (1%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKK LWSE +      +     ATAVG+L  SL +QR+ RE+TLALRTGLR+ARAEFS
Sbjct: 77  MYLKKALWSESMATPESDQKAPYPATAVGDLVTSLNRQRLYREVTLALRTGLREARAEFS 136

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLD 120
           FLRVRGLRS+LK LRSVAESDSTI+ FC SQS+PELQVVPVLFQ+S K+   D  V +LD
Sbjct: 137 FLRVRGLRSILKFLRSVAESDSTINLFCHSQSIPELQVVPVLFQNSLKQYEEDT-VANLD 195

Query: 121 HIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE 180
           HIF V+PM+++SPSTDAEVALALRVLEGCCLLHRES I AH+HKAI+ILM+ILSTRG LE
Sbjct: 196 HIFGVEPMKISSPSTDAEVALALRVLEGCCLLHRESTIFAHQHKAIEILMDILSTRGVLE 255

Query: 181 QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLLLIS 234
           QGACLDAL S+MLDSSANQ+DFE+C+GIEEVA +IRDKQVDENLR     F LLLI 
Sbjct: 256 QGACLDALISIMLDSSANQMDFESCDGIEEVAHIIRDKQVDENLRMKCGEFLLLLIG 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455310|ref|XP_002275469.1| PREDICTED: uncharacterized protein LOC100241859 [Vitis vinifera]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 172/237 (72%), Positives = 197/237 (83%), Gaps = 4/237 (1%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKK LWSE +      +     ATAVG+L  SL +QR+ RE+TLALRTGLR+ARAEFS
Sbjct: 1   MYLKKALWSESMATPESDQKAPYPATAVGDLVTSLNRQRLYREVTLALRTGLREARAEFS 60

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLD 120
           FLRVRGLRS+LK LRSVAESDSTI+ FC SQS+PELQVVPVLFQ+S K+   D  V +LD
Sbjct: 61  FLRVRGLRSILKFLRSVAESDSTINLFCHSQSIPELQVVPVLFQNSLKQYEEDT-VANLD 119

Query: 121 HIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE 180
           HIF V+PM+++SPSTDAEVALALRVLEGCCLLHRES I AH+HKAI+ILM+ILSTRG LE
Sbjct: 120 HIFGVEPMKISSPSTDAEVALALRVLEGCCLLHRESTIFAHQHKAIEILMDILSTRGVLE 179

Query: 181 QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLLLIS 234
           QGACLDAL S+MLDSSANQ+DFE+C+GIEEVA +IRDKQVDENLR     F LLLI 
Sbjct: 180 QGACLDALISIMLDSSANQMDFESCDGIEEVAHIIRDKQVDENLRMKCGEFLLLLIG 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456405|ref|XP_004145940.1| PREDICTED: uncharacterized protein LOC101204796 [Cucumis sativus] gi|449531007|ref|XP_004172479.1| PREDICTED: uncharacterized protein LOC101231506 [Cucumis sativus]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/243 (70%), Positives = 197/243 (81%), Gaps = 10/243 (4%)

Query: 1   MYLKKPLWSEGVEKQM------ESETETAAATAVGELANSLKQQRVQREITLALRTGLRD 54
           MYLKK LW++G+          + ++ +A ++AVGEL NSL +QR+ RE+T ALRTGLRD
Sbjct: 1   MYLKKALWTDGLTPNPSADSLPDDQSASATSSAVGELVNSLNRQRLFREVTFALRTGLRD 60

Query: 55  ARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDE 114
           A AEFSFLRV GLRSLLK LRS+AES+STI  FCQ+QSVPELQVVPVLFQ S KE S D+
Sbjct: 61  ASAEFSFLRVCGLRSLLKSLRSIAESNSTIELFCQTQSVPELQVVPVLFQQSLKE-SEDD 119

Query: 115 RVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILS 174
            V +LDHIF V+P+++ SPSTDAEVALALRVLEGCCLLHRES  LAH+HKAI +LMNILS
Sbjct: 120 PVVNLDHIFGVEPLKIASPSTDAEVALALRVLEGCCLLHRESTALAHQHKAIPVLMNILS 179

Query: 175 TRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLL 231
            RG LEQGACLDAL S+MLDSSANQ+DFE CNGIEEVA LIRDKQ+DENLR     F LL
Sbjct: 180 IRGILEQGACLDALISVMLDSSANQMDFEVCNGIEEVAVLIRDKQIDENLRLKCGEFLLL 239

Query: 232 LIS 234
           LI 
Sbjct: 240 LIG 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55956221|emb|CAG26906.1| impaired sucrose induction 1-like protein [Solanum tuberosum]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 197/237 (83%), Gaps = 8/237 (3%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLK P WS    K   SE++T + +AV EL +SL++QR+ RE+TLALRTGL DARAEFS
Sbjct: 1   MYLKAPFWS----KDSNSESQTESPSAVAELISSLERQRLYREVTLALRTGLSDARAEFS 56

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLD 120
           FLR+RGLR +LK LRSVAESD+TI+ FC SQS+P+LQVVPVLF+HS + D+ D+ VTSLD
Sbjct: 57  FLRIRGLRVILKFLRSVAESDTTINLFCHSQSIPDLQVVPVLFRHSLR-DTEDQNVTSLD 115

Query: 121 HIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE 180
           HIFTV+PM +TSPSTD+EV+LALRVLEGCCL+H ES +LAH++KAI +LMNILSTRG L 
Sbjct: 116 HIFTVEPMEITSPSTDSEVSLALRVLEGCCLIHCESNVLAHQYKAIPVLMNILSTRGVLG 175

Query: 181 QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLLLIS 234
           QGACLDAL ++MLDSSANQ DFEACNGIEEVA LIRDKQVDE LR     F LLLI 
Sbjct: 176 QGACLDALIAIMLDSSANQADFEACNGIEEVAILIRDKQVDEKLRLKCGEFLLLLIG 232

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687718|ref|NP_194505.2| impaired sucrose induction 1 protein [Arabidopsis thaliana] gi|28393094|gb|AAO41981.1| unknown protein [Arabidopsis thaliana] gi|28827484|gb|AAO50586.1| unknown protein [Arabidopsis thaliana] gi|55956219|emb|CAG26905.1| impaired sucrose induction 1 [Arabidopsis thaliana] gi|332659989|gb|AEE85389.1| impaired sucrose induction 1 protein [Arabidopsis thaliana]

 Score =  325 bits (834), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 162/244 (66%), Positives = 198/244 (81%), Gaps = 11/244 (4%)

Query: 1   MYLKKPLWSEGVEKQME--SETET-----AAATAVGELANSLKQQRVQREITLALRTGLR 53
           MYLK+P+WS+G     E  SE+ET     AA+  V EL  SL  QR+ RE+TL+LRTGLR
Sbjct: 1   MYLKRPIWSDGASATPENPSESETGEESDAASMVVEELVTSLNTQRLYRELTLSLRTGLR 60

Query: 54  DARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVD 113
           DA AEFSFLR+RGLRSLLK LR+VA+SDS I  F  +Q++ +LQ+VPVLFQHS KE + D
Sbjct: 61  DACAEFSFLRIRGLRSLLKTLRTVADSDSIIRLFSHTQTISDLQLVPVLFQHSLKE-AED 119

Query: 114 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL 173
           ++VTSLDHIF+V+PM++TSPSTDAEVA+ALRVLEGCCLLH +S +LAHKH A++++MN+L
Sbjct: 120 DKVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKHGAVRVMMNVL 179

Query: 174 STRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYL 230
           STRG LEQGACLDAL S++LDSSANQ+DF ACNGIEEVA L+RDKQ DENLR     F L
Sbjct: 180 STRGVLEQGACLDALISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFLL 239

Query: 231 LLIS 234
           LL+ 
Sbjct: 240 LLVG 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55956223|emb|CAG26907.1| impaired sucrose induction 1-like protein [Mesembryanthemum crystallinum]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 160/223 (71%), Positives = 187/223 (83%), Gaps = 4/223 (1%)

Query: 15  QMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKIL 74
           Q+ES + +AA  AV EL  SL Q ++ RE+TL+LR+GLRDARAEFSFLRVRGLR LLK L
Sbjct: 25  QVESPSTSAAMAAVEELVESLTQAKLYREVTLSLRSGLRDARAEFSFLRVRGLRCLLKFL 84

Query: 75  RSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDERVTSLDHIFTVDPMRVTSPS 134
           RSVA+SDSTI  FC +QS+P+LQVVP LF+HS KE + +ERV +LDHIFTV+PM++TSPS
Sbjct: 85  RSVADSDSTIRLFCLTQSIPDLQVVPALFEHSLKE-TEEERVANLDHIFTVEPMKLTSPS 143

Query: 135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLD 194
           TD EVALALRVLEGCCL+HR+S I AH+HKAI +LMNILS RG LEQGACLDAL +LMLD
Sbjct: 144 TDTEVALALRVLEGCCLIHRQSTIFAHQHKAILVLMNILSNRGVLEQGACLDALIALMLD 203

Query: 195 SSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLLLIS 234
           S+ANQ+DFE CNGIEEVA +IRDKQVDENLR     F LLLI 
Sbjct: 204 STANQMDFETCNGIEEVAAIIRDKQVDENLRMKCGEFLLLLIG 246

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513219|gb|AFK44671.1| unknown [Lotus japonicus]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/242 (68%), Positives = 188/242 (77%), Gaps = 16/242 (6%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLKKPLWSEG+E   +         AV E+  SL+QQRV RE+TLALRTGLRDARAEFS
Sbjct: 1   MYLKKPLWSEGIESDSDG--------AVVEVVKSLQQQRVYREVTLALRTGLRDARAEFS 52

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKE---DSVDERVT 117
           FLRVR LRS+L  LRSVA+SDSTI  F Q+QS+PELQVVPVLFQHS KE   D  + R+ 
Sbjct: 53  FLRVRALRSILNFLRSVADSDSTIDLFNQTQSIPELQVVPVLFQHSLKETGEDYTENRLG 112

Query: 118 SLDHIFTVD--PMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST 175
            L HI  V+  P+++TSPSTD EVALALRVLEGCCLLH +S  LAH+H AI++LMNILS 
Sbjct: 113 DLTHILGVEVEPIKLTSPSTDHEVALALRVLEGCCLLHPQSTALAHQHNAIQVLMNILSN 172

Query: 176 RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLLL 232
           RG LEQGACLDAL SLM+DSS NQ+DFE CNGI EVA+LIRDKQVDENLR     F LLL
Sbjct: 173 RGVLEQGACLDALISLMVDSSPNQMDFEKCNGIMEVADLIRDKQVDENLRLKCGEFLLLL 232

Query: 233 IS 234
           I 
Sbjct: 233 IG 234

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469026|emb|CAB38287.1| hypothetical protein [Arabidopsis thaliana] gi|7269629|emb|CAB81425.1| hypothetical protein [Arabidopsis thaliana]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 192/231 (83%), Gaps = 8/231 (3%)

Query: 1   MYLKKPLWSEGVEKQME--SETET-----AAATAVGELANSLKQQRVQREITLALRTGLR 53
           MYLK+P+WS+G     E  SE+ET     AA+  V EL  SL  QR+ RE+TL+LRTGLR
Sbjct: 1   MYLKRPIWSDGASATPENPSESETGEESDAASMVVEELVTSLNTQRLYRELTLSLRTGLR 60

Query: 54  DARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVD 113
           DA AEFSFLR+RGLRSLLK LR+VA+SDS I  F  +Q++ +LQ+VPVLFQHS KE + D
Sbjct: 61  DACAEFSFLRIRGLRSLLKTLRTVADSDSIIRLFSHTQTISDLQLVPVLFQHSLKE-AED 119

Query: 114 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL 173
           ++VTSLDHIF+V+PM++TSPSTDAEVA+ALRVLEGCCLLH +S +LAHKH A++++MN+L
Sbjct: 120 DKVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKHGAVRVMMNVL 179

Query: 174 STRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENL 224
           STRG LEQGACLDAL S++LDSSANQ+DF ACNGIEEVA L+RDKQ DENL
Sbjct: 180 STRGVLEQGACLDALISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENL 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806386|ref|NP_001241236.1| uncharacterized protein LOC100819127 [Glycine max] gi|255634502|gb|ACU17615.1| unknown [Glycine max]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 167/241 (69%), Positives = 192/241 (79%), Gaps = 10/241 (4%)

Query: 1   MYLKKPLWSEGVEKQMESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARAEFS 60
           MYLK+PLWSE  +    ++TE   A  V E+  SL+QQRV RE+TLALRTGLRDARAEFS
Sbjct: 1   MYLKEPLWSETGKGDGSAKTEDYGA--VSEVVKSLQQQRVYREVTLALRTGLRDARAEFS 58

Query: 61  FLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDE----RV 116
           FLRVR LRS+LK LRSVAESDSTI  F Q QS+P+LQVVPVLFQHS KE S DE    RV
Sbjct: 59  FLRVRALRSILKFLRSVAESDSTIDLFNQIQSIPQLQVVPVLFQHSLKE-SGDEYSENRV 117

Query: 117 TSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR 176
             L HIF V+PM++TSPSTDAEVALALRVLEGCCLLH  S  LAH+H AI++LMNILSTR
Sbjct: 118 GDLSHIFGVEPMKLTSPSTDAEVALALRVLEGCCLLHPHSTALAHQHNAIQVLMNILSTR 177

Query: 177 GALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLLLI 233
           G LEQGACLDAL SLM+DSS NQ+DFE C+GI EVA+L+RD+++DE+LR     F LLLI
Sbjct: 178 GVLEQGACLDALISLMVDSSFNQMDFEKCSGIMEVADLLRDQELDEDLRLKCGEFLLLLI 237

Query: 234 S 234
            
Sbjct: 238 G 238

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806946|ref|NP_001242053.1| uncharacterized protein LOC100808750 [Glycine max] gi|255636499|gb|ACU18588.1| unknown [Glycine max]

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/247 (66%), Positives = 191/247 (77%), Gaps = 13/247 (5%)

Query: 1   MYLKKPLWSEGVEKQ---MESETETAAATAVGELANSLKQQRVQREITLALRTGLRDARA 57
           MYLKKPLWSE  +      ++E E     AV E+  SL+QQRV RE+TLALRTGLRDARA
Sbjct: 1   MYLKKPLWSETGKDDGGSAKTEEEDHGDGAVSEVVKSLQQQRVYREVTLALRTGLRDARA 60

Query: 58  EFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVDE--- 114
           EFSF RVR LRS+LK LRSVAES STI  F Q+QS+P+LQVVPVLF HS KE   D+   
Sbjct: 61  EFSFPRVRALRSILKFLRSVAESGSTIDLFNQTQSIPQLQVVPVLFHHSLKESGDDDYNE 120

Query: 115 ---RVTSLDHI-FTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILM 170
              +V  L HI F V+PM++TSPSTDAEVALALRVLEGCCLLH +S  LAH+H AI++LM
Sbjct: 121 KKIKVGDLSHILFGVEPMKLTSPSTDAEVALALRVLEGCCLLHPQSTALAHQHNAIQVLM 180

Query: 171 NILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM--- 227
           NILSTRG LEQGACLDAL SLM+DSS+NQ+DFE C+GI EVA+L+RDKQ+DENLR     
Sbjct: 181 NILSTRGVLEQGACLDALISLMVDSSSNQMDFEKCSGIMEVADLLRDKQLDENLRLKCGE 240

Query: 228 FYLLLIS 234
           F LLLI 
Sbjct: 241 FLLLLIG 247

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
TAIR|locus:2137757	305	ISI1 "IMPAIRED SUCROSE INDUCTI	0.987	0.760	0.637	1.5e-76
UNIPROTKB|G4NEM9	299	MGG_00757 "Cell division contr	0.540	0.424	0.237	0.00054

TAIR|locus:2137757 ISI1 "IMPAIRED SUCROSE INDUCTION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 155/243 (63%), Positives = 190/243 (78%)

Query:     1 MYLKKPLWSEGVE-------KQMXXXXXXXXXXXVGELANSLKQQRVQREITLALRTGLR 53
             MYLK+P+WS+G         +             V EL  SL  QR+ RE+TL+LRTGLR
Sbjct:     1 MYLKRPIWSDGASATPENPSESETGEESDAASMVVEELVTSLNTQRLYRELTLSLRTGLR 60

Query:    54 DARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFKEDSVD 113
             DA AEFSFLR+RGLRSLLK LR+VA+SDS I  F  +Q++ +LQ+VPVLFQHS KE + D
Sbjct:    61 DACAEFSFLRIRGLRSLLKTLRTVADSDSIIRLFSHTQTISDLQLVPVLFQHSLKE-AED 119

Query:   114 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL 173
             ++VTSLDHIF+V+PM++TSPSTDAEVA+ALRVLEGCCLLH +S +LAHKH A++++MN+L
Sbjct:   120 DKVTSLDHIFSVEPMKITSPSTDAEVAVALRVLEGCCLLHPQSTVLAHKHGAVRVMMNVL 179

Query:   174 STRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYL 230
             STRG LEQGACLDAL S++LDSSANQ+DF ACNGIEEVA L+RDKQ DENLR     F L
Sbjct:   180 STRGVLEQGACLDALISVLLDSSANQVDFGACNGIEEVAMLMRDKQADENLRLRCGEFLL 239

Query:   231 LLI 233
             LL+
Sbjct:   240 LLV 242

GO:0005634 "nucleus" evidence=ISM

GO:0009745 "sucrose mediated signaling" evidence=IMP

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IMP

UNIPROTKB|G4NEM9 MGG_00757 "Cell division control protein 14" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 110 (43.8 bits), Expect = 0.00054, P = 0.00054
 Identities = 33/139 (23%), Positives = 70/139 (50%)

Query:   104 QHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKH 163
             Q SF+ + +   + +L+++ +    R      D  +  AL +++G  LLH  S IL  + 
Sbjct:    84 QDSFEWNIISRLIDTLNNLLS----RGAEGENDMLIVSALELMQGLLLLHPPSKILFMRD 139

Query:   164 KAIKILMNILSTRG--ALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVD 221
              ++ +L+++L      A+++ A L  +T+L +D+  N   FE  +G+  V  L + +   
Sbjct:   140 PSMNLLLDLLEPCNCPAIQKAAVLVLVTAL-IDTPQNTRTFERLDGLLTVTSLFKSRATS 198

Query:   222 ENLR-----FMFYLLLIST 235
              +L+     F+++ L+  T
Sbjct:   199 RDLKVKLMEFLYFYLMPET 217


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       224   0.00099  112 3  11 22  0.48    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  153 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.23u 0.11s 19.34t   Elapsed:  00:00:01
  Total cpu time:  19.23u 0.11s 19.34t   Elapsed:  00:00:01
  Start:  Sat May 11 01:05:09 2013   End:  Sat May 11 01:05:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	235
pfam08045	255	pfam08045, CDC14, Cell division control protein 14	2e-22

>gnl|CDD|219711 pfam08045, CDC14, Cell division control protein 14, SIN component

 Score = 92.1 bits (229), Expect = 2e-22
 Identities = 42/191 (21%), Positives = 71/191 (37%), Gaps = 14/191 (7%)

Query: 48  LRTGLRDARAEFSFLRVRG-LRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHS 106
           +R GLR   +  + L              S   +   +       ++ E   +   FQ+ 
Sbjct: 20  IRKGLRQVESLLASLCPSISKTRNSDTRESALNARKVLELLRDDPALREFFKLQDGFQY- 78

Query: 107 FKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAI 166
              +     VT+LD +  +          D  +  ALR+L+G  LLH  S  L  +   +
Sbjct: 79  ---NLASRLVTTLDRL--LGSGGNEQGQNDILILNALRLLQGLLLLHPPSRTLFSREANM 133

Query: 167 KILMNILSTRGALE-QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLR 225
            +L+++L        Q A +  L  ++L +  N   FE  NG+  V  L +     + L 
Sbjct: 134 NLLLDLLEPANPPAIQVATISTLVHILLKNPTNTRTFERLNGLSTVISLFKLSSTQQELN 193

Query: 226 F------MFYL 230
           F       FYL
Sbjct: 194 FKIIEFLYFYL 204

Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PF08045	257	CDC14: Cell division control protein 14, SIN compo	100.0
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	95.8
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	94.23
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	88.65
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	88.08

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=100.00  E-value=1.3e-51  Score=363.85  Aligned_cols=202  Identities=33%  Similarity=0.468  Sum_probs=192.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHhhchHHHHHHHHHhhhcccchhhhhccCCcCCccchhhhhccccc
Q 026668           29 GELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVLFQHSFK  108 (235)
Q Consensus        29 ~elv~sl~~qR~yRevtlaLr~gLRDa~AeFSFlR~rgLr~ll~fLrs~a~sd~~i~LF~~sQs~~~lQvvPvLF~hsl~  108 (235)
                      +|-.-|+..++||+|.+.++|+|||++++.|+|++.++.++.-++.|+.+.++++|..|+++|+++++|++|+.|+|++.
T Consensus         1 ME~~ls~~~d~L~s~~~~~ir~GLrq~~~lL~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~eF~~LQ~~Fe~Nl~   80 (257)
T PF08045_consen    1 MESLLSLAFDNLYSEDTPKIRKGLRQLEGLLAQLCLSIRQSRNSSKRSSAASRKGLELFRDDPALREFQKLQEGFEWNLA   80 (257)
T ss_pred             CchHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccccccccccchhhccchhhhhcccchhHHHHHHhHHHhhcchh
Confidence            35667899999999999999999999999999999999888888889999999999999999999999999999999994


Q ss_pred             cccccccccccccccccCc-ccccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHH-hhcCccchhhHHH
Q 026668          109 EDSVDERVTSLDHIFTVDP-MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL-STRGALEQGACLD  186 (235)
Q Consensus       109 ~~~~~~~V~~l~~i~g~ep-~kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL-~arg~leq~acLD  186 (235)
                          ...|..+++++|.++ ++.++|++|.+|++||||||||||+||+|+.++|++++|+++||+| .++++.+|.+|||
T Consensus        81 ----~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~  156 (257)
T PF08045_consen   81 ----SRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLD  156 (257)
T ss_pred             ----hhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHH
Confidence                678999999999999 9999999999999999999999999999999999999999999999 5588999999999


Q ss_pred             HHHHHHhCCchhhhhhhhhccHHHHHHHHhhcCCCchhhHH---Hhhhhhc
Q 026668          187 ALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM---FYLLLIS  234 (235)
Q Consensus       187 aLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~vd~~vRlK---FllLlig  234 (235)
                      ||+|+|+|+|+|+|+||+++|++.|++++|++++++++|||   ||.++++
T Consensus       157 tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  157 TLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999   8888764

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=95.80  E-value=0.049  Score=38.61  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=79.2

Q ss_pred             CCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHH
Q 026668          133 PSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVA  212 (235)
Q Consensus       133 p~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va  212 (235)
                      .+...-..-|++.|...|...+.+....-+..+++.++++|....+-.+..|+=+|-.+.-+.+++...+.+.+++..+.
T Consensus        18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~   97 (120)
T cd00020          18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV   97 (120)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence            33456667788999999999888888888889999999999998888889999999999888888889999999999999


Q ss_pred             HHHhhcCCCchhhHH
Q 026668          213 ELIRDKQVDENLRFM  227 (235)
Q Consensus       213 ~llKd~~vd~~vRlK  227 (235)
                      +++.+.  +.++|-.
T Consensus        98 ~~l~~~--~~~~~~~  110 (120)
T cd00020          98 NLLDSS--NEDIQKN  110 (120)
T ss_pred             HHHhcC--CHHHHHH
Confidence            999887  5566655

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.22  Score=47.21  Aligned_cols=107  Identities=21%  Similarity=0.239  Sum_probs=94.8

Q ss_pred             cccccCcccccCCCchHHH-HHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccch-hhHHHHHHHHHhCCchh
Q 026668          121 HIFTVDPMRVTSPSTDAEV-ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQ-GACLDALTSLMLDSSAN  198 (235)
Q Consensus       121 ~i~g~ep~kitsp~Td~Ev-aLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq-~acLDaLl~lmvDSs~N  198 (235)
                      ..-|..|+---.-.+|++| ++|.|||--|-=+-|.|-..+=+..|.+-|+-+|+..++.+- +..|=|+-|++---++-
T Consensus       122 ~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g  201 (342)
T KOG2160|consen  122 SLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG  201 (342)
T ss_pred             hccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH
Confidence            3456666333555677777 799999999999999999999999999999999998777765 88899999999999999


Q ss_pred             hhhhhhhccHHHHHHHHhhcCCCchhhHH
Q 026668          199 QLDFEACNGIEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       199 q~dFE~~~Gle~Va~llKd~~vd~~vRlK  227 (235)
                      +..|-+.+|.+-..+++.+.+.+..+++|
T Consensus       202 ~~~fl~~~G~~~L~~vl~~~~~~~~lkrK  230 (342)
T KOG2160|consen  202 QDEFLKLNGYQVLRDVLQSNNTSVKLKRK  230 (342)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCcchHHHHH
Confidence            99999999999999999999999999999

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=88.65  E-value=4.3  Score=32.33  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=78.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--hhHHhhchHHHHHHHHHhhhcccchhhhhccCCcCCccchhhh
Q 026668           25 ATAVGELANSLKQQRVQREITLALRTGLRDARAEF--SFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVL  102 (235)
Q Consensus        25 ~~~v~elv~sl~~qR~yRevtlaLr~gLRDa~AeF--SFlR~rgLr~ll~fLrs~a~sd~~i~LF~~sQs~~~lQvvPvL  102 (235)
                      .......++.+.....-.++--.|+..||-....|  .|+-..|+..|++.|.........-                  
T Consensus        65 ~~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~------------------  126 (187)
T PF06371_consen   65 KSSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKS------------------  126 (187)
T ss_dssp             CHHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTC------------------
T ss_pred             hhhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhc------------------
Confidence            34555666767665555466677777777777777  8999999999999998843321110                  


Q ss_pred             hccccccccccccccccccccccCcccccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchh
Q 026668          103 FQHSFKEDSVDERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQG  182 (235)
Q Consensus       103 F~hsl~~~~~~~~V~~l~~i~g~ep~kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~  182 (235)
                                                    ..........+|-|--+|-.+.+...+.....++..+...|....+-...
T Consensus       127 ------------------------------~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~  176 (187)
T PF06371_consen  127 ------------------------------EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK  176 (187)
T ss_dssp             ------------------------------TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred             ------------------------------chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence                                          11222334457777777777777788888888888888888877777777


Q ss_pred             hHHHHHHHHH
Q 026668          183 ACLDALTSLM  192 (235)
Q Consensus       183 acLDaLl~lm  192 (235)
                      .++|.|.++-
T Consensus       177 ~~leiL~~lc  186 (187)
T PF06371_consen  177 LALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888777653

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=88.08  E-value=2.2  Score=30.13  Aligned_cols=65  Identities=18%  Similarity=0.241  Sum_probs=55.5

Q ss_pred             hhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhcCCCchhhHH
Q 026668          161 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       161 h~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~vd~~vRlK  227 (235)
                      .+...++.++++|....+-....++.+|-.+-.+++++...|-+.++++.+.+++.+.  +.+++..
T Consensus         4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~   68 (120)
T cd00020           4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKA   68 (120)
T ss_pred             HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHH
Confidence            3556788899999877777889999999999999999999999999999999999984  5677655

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 46/283 (16%), Positives = 82/283 (28%), Gaps = 81/283 (28%)

Query: 2   YLKKPLWSEGVEKQMESETETAAATAVGELANS---LKQQRVQR-EITLALRTGLRDARA 57
           +L  P+ +E  +  M +            L N      +  V R +  L LR  L + R 
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 58  EFSFLRVRGL----RSLLKILRSVAESDSTIHFFCQSQSVPELQVVPVL---FQHSFKED 110
               + + G+    ++ +       +        C S  V       +     ++    +
Sbjct: 150 A-KNVLIDGVLGSGKTWV-----ALDV-------CLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 111 SVDERVTSLDHIFTVDPMRVTSPSTDA-------EVALALRVLEGC-----CLLHRESAI 158
           +V E +  L +    DP   +     +        +   LR L        CLL     +
Sbjct: 197 TVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----V 249

Query: 159 LAH-KHKAI--------KILM--------NILS--TRGALEQGACLDALT--------SL 191
           L + ++           KIL+        + LS  T   +        LT          
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 192 MLDSSANQLDFEACNG----IEEVAELIRDKQVDENLRFMFYL 230
            LD     L  E        +  +AE IR    D    +  + 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIR----DGLATWDNWK 348

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	95.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.8
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.72
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	95.61
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	95.33
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.99
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	94.66
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.28
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	94.14
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	93.35
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	93.15
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	92.85
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	92.2
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	90.98
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	90.8
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	90.51
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	90.19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	90.01
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	89.68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	89.57
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	88.79
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	88.41
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	88.28
3nmz_A	458	APC variant protein; protein-protein complex, arma	88.08
3nmz_A	458	APC variant protein; protein-protein complex, arma	87.47
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	87.17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	86.9
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	82.33
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	81.36
3grl_A	651	General vesicular transport factor P115; vesicle t	81.33
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	81.07

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=95.94  E-value=0.02  Score=49.20  Aligned_cols=86  Identities=15%  Similarity=0.177  Sum_probs=74.7

Q ss_pred             HHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhc-CccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhc
Q 026668          140 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (235)
Q Consensus       140 aLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~ar-g~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~  218 (235)
                      .-|.++|--++-..+.|+..+-++.|+..|+++|... .+-.+..++-||-++.-+.++++..|.+.+|+..++++|++.
T Consensus       100 ~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~  179 (296)
T 1xqr_A          100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ  179 (296)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence            4678888878888899999999999999999999864 455788999999998889999999999999999999999874


Q ss_pred             CCCchhhHH
Q 026668          219 QVDENLRFM  227 (235)
Q Consensus       219 ~vd~~vRlK  227 (235)
                        |..++.+
T Consensus       180 --d~~v~~~  186 (296)
T 1xqr_A          180 --VQKLKVK  186 (296)
T ss_dssp             --CHHHHHH
T ss_pred             --CHHHHHH
Confidence              6777766

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.80  E-value=0.027  Score=42.76  Aligned_cols=90  Identities=13%  Similarity=0.138  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHH
Q 026668          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (235)
Q Consensus       136 d~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~ll  215 (235)
                      +....-|++.|.-.|-.++..+....+..+++.++++|....+-.+..++.+|-.+--+++++...+-+.+|+..+.+++
T Consensus        16 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll   95 (252)
T 4hxt_A           16 SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL   95 (252)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence            45556788888888888887777778889999999999988888899999999999999999999999999999999999


Q ss_pred             hhcCCCchhhHH
Q 026668          216 RDKQVDENLRFM  227 (235)
Q Consensus       216 Kd~~vd~~vRlK  227 (235)
                      ++.  ++++|..
T Consensus        96 ~~~--~~~v~~~  105 (252)
T 4hxt_A           96 TST--DSEVQKE  105 (252)
T ss_dssp             TCS--SHHHHHH
T ss_pred             cCC--CHHHHHH
Confidence            963  5677755

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.72  E-value=0.024  Score=42.77  Aligned_cols=87  Identities=16%  Similarity=0.153  Sum_probs=73.7

Q ss_pred             HHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhc
Q 026668          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (235)
Q Consensus       139 vaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~  218 (235)
                      ..-|+.+|.-.|...+..+....+..+++.|+++|....+-.|..++-+|-.+.-+++++...+.+.++++.+.+++++ 
T Consensus       113 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-  191 (210)
T 4db6_A          113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH-  191 (210)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC-
Confidence            4456777877787777776666778899999999998777789999999999999999999999999999999999985 


Q ss_pred             CCCchhhHH
Q 026668          219 QVDENLRFM  227 (235)
Q Consensus       219 ~vd~~vRlK  227 (235)
                       -++++|.+
T Consensus       192 -~~~~v~~~  199 (210)
T 4db6_A          192 -ENEKIQKE  199 (210)
T ss_dssp             -SCHHHHHH
T ss_pred             -CCHHHHHH
Confidence             46677766

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=95.61  E-value=0.039  Score=41.55  Aligned_cols=97  Identities=15%  Similarity=0.133  Sum_probs=79.4

Q ss_pred             cccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccH
Q 026668          129 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  208 (235)
Q Consensus       129 kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gl  208 (235)
                      ++-+.+...-..-|++.|.-.|-..+..+....+..+++.++++|....+-.+..++-+|-.+..+++.+...+-+.+|+
T Consensus        19 ~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i   98 (210)
T 4db6_A           19 QQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL   98 (210)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH
Confidence            33333333444567888888888888888888888999999999998877788899999988888999999999999999


Q ss_pred             HHHHHHHhhcCCCchhhHH
Q 026668          209 EEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       209 e~Va~llKd~~vd~~vRlK  227 (235)
                      +.++++|++.  +.++|..
T Consensus        99 ~~L~~lL~~~--~~~v~~~  115 (210)
T 4db6_A           99 PALVQLLSSP--NEQILQE  115 (210)
T ss_dssp             HHHHHHTTCS--CHHHHHH
T ss_pred             HHHHHHHcCC--cHHHHHH
Confidence            9999999876  5677765

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=95.33  E-value=0.044  Score=41.54  Aligned_cols=90  Identities=14%  Similarity=0.167  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHH
Q 026668          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (235)
Q Consensus       136 d~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~ll  215 (235)
                      +.-..-|++.|.-.|...+..+....+..+++.++++|....+-.+..++-+|-.+.-+++++...+.+.++++.+.+++
T Consensus       142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  221 (252)
T 4hxt_A          142 SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL  221 (252)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            44455678888888887777777777789999999999987788899999999999988999999999999999999999


Q ss_pred             hhcCCCchhhHH
Q 026668          216 RDKQVDENLRFM  227 (235)
Q Consensus       216 Kd~~vd~~vRlK  227 (235)
                      ++.  ++++|..
T Consensus       222 ~~~--~~~v~~~  231 (252)
T 4hxt_A          222 TST--DSEVQKE  231 (252)
T ss_dssp             GCS--CHHHHHH
T ss_pred             CCC--cHHHHHH
Confidence            864  5677766

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.99  E-value=0.079  Score=40.87  Aligned_cols=89  Identities=15%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHh
Q 026668          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (235)
Q Consensus       137 ~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llK  216 (235)
                      .-..-|++.|.-+|-.++..+....+..+++.++++|....+-.+..++.+|-.+-.+.+..+..+-+.+|++.++++|+
T Consensus        69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~  148 (252)
T 4db8_A           69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS  148 (252)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh
Confidence            33456788888888878888888888899999999999877778899999888776665555488899999999999998


Q ss_pred             hcCCCchhhHH
Q 026668          217 DKQVDENLRFM  227 (235)
Q Consensus       217 d~~vd~~vRlK  227 (235)
                      +.  +.++|..
T Consensus       149 ~~--~~~v~~~  157 (252)
T 4db8_A          149 SP--NEQILQE  157 (252)
T ss_dssp             CS--CHHHHHH
T ss_pred             CC--CHHHHHH
Confidence            75  6677765

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=94.66  E-value=0.047  Score=42.12  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHh
Q 026668          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (235)
Q Consensus       137 ~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llK  216 (235)
                      .-..-|++.|.-.|-..+..+....+..+++.++++|....+-.+..++.+|-.+.-.++.+...+.+.+|++.+.++++
T Consensus       153 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  232 (252)
T 4db8_A          153 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS  232 (252)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence            33455688888888777777777778899999999999887888999999999988888899999999999999999998


Q ss_pred             hcCCCchhhHH
Q 026668          217 DKQVDENLRFM  227 (235)
Q Consensus       217 d~~vd~~vRlK  227 (235)
                      +.  ++++|..
T Consensus       233 ~~--~~~v~~~  241 (252)
T 4db8_A          233 HE--NEKIQKE  241 (252)
T ss_dssp             CS--SSHHHHT
T ss_pred             CC--CHHHHHH
Confidence            75  5677765

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=94.28  E-value=0.13  Score=45.34  Aligned_cols=90  Identities=21%  Similarity=0.289  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHh
Q 026668          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (235)
Q Consensus       137 ~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llK  216 (235)
                      +.-.-|...|.-.|...+.++....+..+++.|+++|....+-.|.....+|--+-.++++|...+-+++||...+++|+
T Consensus        17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~   96 (457)
T 1xm9_A           17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR   96 (457)
T ss_dssp             HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Confidence            44556788888888777888877789999999999999777778899999999999999999999999999999999998


Q ss_pred             hcCCCchhhHH
Q 026668          217 DKQVDENLRFM  227 (235)
Q Consensus       217 d~~vd~~vRlK  227 (235)
                      +.+ +++++..
T Consensus        97 ~~~-~~~~~~~  106 (457)
T 1xm9_A           97 RTG-NAEIQKQ  106 (457)
T ss_dssp             TCC-CHHHHHH
T ss_pred             hCC-CHHHHHH
Confidence            654 4455544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=94.14  E-value=0.12  Score=45.53  Aligned_cols=97  Identities=9%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             ccccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCcc------chhhHHHHHHHHHhCCchhhhh
Q 026668          128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGAL------EQGACLDALTSLMLDSSANQLD  201 (235)
Q Consensus       128 ~kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~l------eq~acLDaLl~lmvDSs~Nq~d  201 (235)
                      +++-..+++.=..=|...|.-++. +++.+....+ .+++-|+++|....+.      .+.+++++|--++-.++++.+.
T Consensus       337 v~LL~~~~~~v~~~A~~aL~nls~-~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~  414 (457)
T 1xm9_A          337 ARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ  414 (457)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHH
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHhc-CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            566555554333334455554444 6677777666 4999999999875442      4469999999999999999999


Q ss_pred             hhhhccHHHHHHHHhhcCCCchhhHH
Q 026668          202 FEACNGIEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       202 FE~~~Gle~Va~llKd~~vd~~vRlK  227 (235)
                      +++++|+++++++++.. ..++++-|
T Consensus       415 i~~~g~l~~L~~L~~~~-~~~~i~~~  439 (457)
T 1xm9_A          415 YFSSSMLNNIINLCRSS-ASPKAAEA  439 (457)
T ss_dssp             HCCHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             HHHcCCHHHHHHHHcCC-CcHHHHHH
Confidence            99999999999999965 45677766

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=93.35  E-value=0.11  Score=43.91  Aligned_cols=90  Identities=17%  Similarity=0.300  Sum_probs=76.4

Q ss_pred             ccCCCchHHH-HHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccH
Q 026668          130 VTSPSTDAEV-ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  208 (235)
Q Consensus       130 itsp~Td~Ev-aLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gl  208 (235)
                      +.||..+.++ .-|.+.|+-.|..+++.+....+..+|..|+++|....+-.|..-.-+|.-|=.|+++|....-++.||
T Consensus        17 L~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI   96 (233)
T 3tt9_A           17 LEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGV   96 (233)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             hCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCH
Confidence            4555443233 567788888898889999999999999999999998777788888899999999999999999999999


Q ss_pred             HHHHHHHhhcC
Q 026668          209 EEVAELIRDKQ  219 (235)
Q Consensus       209 e~Va~llKd~~  219 (235)
                      ..++++|+..+
T Consensus        97 ~~Lv~lL~~~~  107 (233)
T 3tt9_A           97 PRLLQVLKQTR  107 (233)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHccCC
Confidence            99999999743

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=93.15  E-value=0.12  Score=43.90  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHh
Q 026668          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR  216 (235)
Q Consensus       137 ~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llK  216 (235)
                      .-...|++.|.-+|..++..+....+..+++.++++|....+-.+..+.++|-.+-.++++|...+-+.+|++.++++++
T Consensus       116 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~  195 (529)
T 1jdh_A          116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR  195 (529)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence            34467888998889888888888888899999999998766666788888888888899999999999999999999999


Q ss_pred             hc
Q 026668          217 DK  218 (235)
Q Consensus       217 d~  218 (235)
                      +.
T Consensus       196 ~~  197 (529)
T 1jdh_A          196 TY  197 (529)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=92.85  E-value=0.34  Score=42.30  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             HHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhc
Q 026668          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (235)
Q Consensus       139 vaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~  218 (235)
                      ...|++.|.-.|-..+.++....+..++..|+++|....+-.+..++.+|-.+--|++++...+-..+++..+.+++++ 
T Consensus       148 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-  226 (530)
T 1wa5_B          148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-  226 (530)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-
Confidence            3456777777777777777777788899999999998778888999999999999999999888889999999999998 


Q ss_pred             CCCchhhHH
Q 026668          219 QVDENLRFM  227 (235)
Q Consensus       219 ~vd~~vRlK  227 (235)
                       .+.++|..
T Consensus       227 -~~~~v~~~  234 (530)
T 1wa5_B          227 -NKPSLIRT  234 (530)
T ss_dssp             -CCHHHHHH
T ss_pred             -CCHHHHHH
Confidence             45666654

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=92.20  E-value=0.45  Score=40.41  Aligned_cols=88  Identities=15%  Similarity=0.096  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCcc-chhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHH
Q 026668          137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGAL-EQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (235)
Q Consensus       137 ~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~l-eq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~ll  215 (235)
                      .-...+.+.|.-.|..+++++....+..+++.++++|.....- .+.++..+ +.-|-.++.|...+-+.++++.+.+++
T Consensus       158 ~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~g~~~~L~~ll  236 (529)
T 1jdh_A          158 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV-LKVLSVCSSNKPAIVEAGGMQALGLHL  236 (529)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH-HHHHTTSTTHHHHHHHTTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHH-HHHHhcCcccHHHHHHCCCHHHHHHHH
Confidence            3345556666666777788888888889999999999765432 22344444 344557888998898889999999999


Q ss_pred             hhcCCCchhhHH
Q 026668          216 RDKQVDENLRFM  227 (235)
Q Consensus       216 Kd~~vd~~vRlK  227 (235)
                      ++.  +.+++..
T Consensus       237 ~~~--~~~~~~~  246 (529)
T 1jdh_A          237 TDP--SQRLVQN  246 (529)
T ss_dssp             TSS--CHHHHHH
T ss_pred             hCC--ChHHHHH
Confidence            875  4555544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=90.98  E-value=0.57  Score=40.64  Aligned_cols=91  Identities=13%  Similarity=0.027  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHH
Q 026668          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (235)
Q Consensus       136 d~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~ll  215 (235)
                      +.--.-|++.|.-.|-.++..+....+..++..|+++|....+-.+..++-+|-.+--|++.+...+-..+++..+..+|
T Consensus       132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL  211 (528)
T 4b8j_A          132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL  211 (528)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence            33345678888888887788888888899999999999987777889999999999999999999999999999999999


Q ss_pred             hhcCCCchhhHH
Q 026668          216 RDKQVDENLRFM  227 (235)
Q Consensus       216 Kd~~vd~~vRlK  227 (235)
                      ++. .+.+++..
T Consensus       212 ~~~-~~~~v~~~  222 (528)
T 4b8j_A          212 NEH-TKLSMLRN  222 (528)
T ss_dssp             CTT-CCHHHHHH
T ss_pred             hcC-CCHHHHHH
Confidence            543 35555544

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=90.80  E-value=0.49  Score=42.88  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=71.3

Q ss_pred             ccCCCchHHHH-HHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccH
Q 026668          130 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  208 (235)
Q Consensus       130 itsp~Td~Eva-LALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gl  208 (235)
                      +++-.++.+|. -+++.|--+| .++.++....+..+++.|+++|.....-.|.++.-+|--+. ..+++...|++++|+
T Consensus       423 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l  500 (644)
T 2z6h_A          423 FVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGAT  500 (644)
T ss_dssp             -CCSSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCH
T ss_pred             hcccccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCh
Confidence            34445677875 4567776666 45577777888899999999998777667888887766654 458899999999999


Q ss_pred             HHHHHHHhhcCCCchhhHH
Q 026668          209 EEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       209 e~Va~llKd~~vd~~vRlK  227 (235)
                      +.+.+++++.  ++++|..
T Consensus       501 ~~L~~ll~~~--~~~vr~~  517 (644)
T 2z6h_A          501 APLTELLHSR--NEGVATY  517 (644)
T ss_dssp             HHHHHHTTCS--CHHHHHH
T ss_pred             hHHHHHHcCC--CHHHHHH
Confidence            9999999865  5677654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=90.51  E-value=0.69  Score=39.68  Aligned_cols=90  Identities=10%  Similarity=0.086  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHH
Q 026668          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (235)
Q Consensus       136 d~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~ll  215 (235)
                      +.-..=|+..|--+|-.++......-...++..|+++|....+-.|....=+|-.+.-.++++...|-+.+++..++++|
T Consensus       139 ~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL  218 (296)
T 1xqr_A          139 DTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV  218 (296)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHH
Confidence            34445577788777777777665555577999999999987777777777777777777888999999999999999999


Q ss_pred             hhcCCCchhhHH
Q 026668          216 RDKQVDENLRFM  227 (235)
Q Consensus       216 Kd~~vd~~vRlK  227 (235)
                      +..  |.++|.+
T Consensus       219 ~~~--d~~v~~~  228 (296)
T 1xqr_A          219 RTE--HSPFHEH  228 (296)
T ss_dssp             TSC--CSTHHHH
T ss_pred             cCC--ChhHHHH
Confidence            876  6677766

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=90.19  E-value=0.35  Score=46.17  Aligned_cols=112  Identities=18%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             ccccccccccccccccccc------------cCc-cc-ccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHH
Q 026668          106 SFKEDSVDERVTSLDHIFT------------VDP-MR-VTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMN  171 (235)
Q Consensus       106 sl~~~~~~~~V~~l~~i~g------------~ep-~k-itsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~Vlld  171 (235)
                      -|.++| -+.+.++|.+.-            +++ ++ +.|+ .+..-.-|...|.-.|.-+.+.|....+..+|..|++
T Consensus        20 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~   97 (584)
T 3l6x_A           20 PLAQHE-RGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVG   97 (584)
T ss_dssp             ---------------------CCCCCCCCCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             cccccc-cchHHHHHHHHhcCCCCCCcccccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHH
Confidence            344555 556677776633            222 22 3343 2333345778888889989999999999999999999


Q ss_pred             HHhhcCccchhhHHHHHHHHHh-CCchhhhhhhhhccHHHHHHHHhhcC
Q 026668          172 ILSTRGALEQGACLDALTSLML-DSSANQLDFEACNGIEEVAELIRDKQ  219 (235)
Q Consensus       172 lL~arg~leq~acLDaLl~lmv-DSs~Nq~dFE~~~Gle~Va~llKd~~  219 (235)
                      +|....+-.|....-+|--|-. |+++|....-+++||..++++|+..+
T Consensus        98 LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~  146 (584)
T 3l6x_A           98 LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR  146 (584)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred             HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence            9998878888888999999988 58999999999999999999999754

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=90.01  E-value=0.53  Score=44.67  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             ccCCCchHHHH-HHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccH
Q 026668          130 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI  208 (235)
Q Consensus       130 itsp~Td~Eva-LALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gl  208 (235)
                      +++..++.||. -+++.|.-+| .++.++....+..+++.|+++|....+-.|.++..+|--+.- .+++...|+++.|+
T Consensus       559 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i  636 (780)
T 2z6g_A          559 FVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGAT  636 (780)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCH
T ss_pred             hhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCH
Confidence            34455666764 4577777666 467777777788999999999998877888988888776654 47889999999999


Q ss_pred             HHHHHHHhhcCCCchhhHH
Q 026668          209 EEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       209 e~Va~llKd~~vd~~vRlK  227 (235)
                      +.+.+++++.  +++||..
T Consensus       637 ~~L~~Ll~~~--~~~Vr~~  653 (780)
T 2z6g_A          637 APLTELLHSR--NEGVATY  653 (780)
T ss_dssp             HHHHHGGGCS--CHHHHHH
T ss_pred             HHHHHHHcCC--CHHHHHH
Confidence            9999999865  5667654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=89.68  E-value=0.5  Score=44.84  Aligned_cols=92  Identities=13%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             ccccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhcc
Q 026668          128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNG  207 (235)
Q Consensus       128 ~kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~G  207 (235)
                      +++-..+.+.-...|+..|--+|..+...+....+..++..|+++|.....-.+..++++|-.+-.+++++...|-+..|
T Consensus       240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~  319 (780)
T 2z6g_A          240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  319 (780)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence            44444444555677899999999998999998888999999999998766666788888888777888999999999999


Q ss_pred             HHHHHHHHhhcC
Q 026668          208 IEEVAELIRDKQ  219 (235)
Q Consensus       208 le~Va~llKd~~  219 (235)
                      ++.+++++++..
T Consensus       320 i~~Lv~lL~~~~  331 (780)
T 2z6g_A          320 PQALVNIMRTYT  331 (780)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCC
Confidence            999999999753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=89.57  E-value=0.56  Score=42.51  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHH
Q 026668          136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (235)
Q Consensus       136 d~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~ll  215 (235)
                      +.-...|+..|.-+|-.+..++....+..+++.|+++|....+-.+.+++++|-.+-..+++|...+-+.+|++.+++++
T Consensus       112 ~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL  191 (644)
T 2z6h_A          112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM  191 (644)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHH
Confidence            44456778888888888788888888889999999999887777788889999888888999999999999999999999


Q ss_pred             hhcCCCchh
Q 026668          216 RDKQVDENL  224 (235)
Q Consensus       216 Kd~~vd~~v  224 (235)
                      ++.. ++++
T Consensus       192 ~~~~-~~~~  199 (644)
T 2z6h_A          192 RTYT-YEKL  199 (644)
T ss_dssp             TTCC-CHHH
T ss_pred             HcCC-hHHH
Confidence            8764 3444

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=88.79  E-value=0.81  Score=40.62  Aligned_cols=80  Identities=15%  Similarity=0.040  Sum_probs=70.2

Q ss_pred             HHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhcCC
Q 026668          141 LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQV  220 (235)
Q Consensus       141 LALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~v  220 (235)
                      -|.++|--+|-..+..+...-++.|+..|+.+|....+-.|..|+-||-.|-.|++.+...+-+++|+..++.+|+....
T Consensus       139 ~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~  218 (529)
T 3tpo_A          139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDL  218 (529)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccch
Confidence            46778888887777777778888999999999988888889999999999999999999999999999999999986543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=88.41  E-value=1.5  Score=36.23  Aligned_cols=87  Identities=17%  Similarity=0.080  Sum_probs=67.9

Q ss_pred             HHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhcC
Q 026668          140 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ  219 (235)
Q Consensus       140 aLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~  219 (235)
                      .-|+++|.-+|-..++.+....+..++..|+.+|....+-.+..++.+|-.+.-|++.+...+-+.+++..+.+++++ .
T Consensus        83 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~  161 (450)
T 2jdq_A           83 FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-Q  161 (450)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-C
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-C
Confidence            446777777776555555555567799999999988777788999999999999998888888888999999999985 2


Q ss_pred             CCchhhHH
Q 026668          220 VDENLRFM  227 (235)
Q Consensus       220 vd~~vRlK  227 (235)
                      .+.++|..
T Consensus       162 ~~~~v~~~  169 (450)
T 2jdq_A          162 NRLTMTRN  169 (450)
T ss_dssp             CCHHHHHH
T ss_pred             CCHHHHHH
Confidence            34566654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=88.28  E-value=2.4  Score=36.74  Aligned_cols=98  Identities=9%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             ccccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhc-CccchhhHHHHHHHHHhCCchhhhhhhhhc
Q 026668          128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACN  206 (235)
Q Consensus       128 ~kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~ar-g~leq~acLDaLl~lmvDSs~Nq~dFE~~~  206 (235)
                      +++-..+.+.-..-|++.|--+|-..+..+...-++.++..|+++|... .+..+..+.-+|-.+.-.++++...+-+.+
T Consensus       292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~  371 (528)
T 4b8j_A          292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG  371 (528)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence            4444444556666789999888887777777777889999999999987 677788888887777777777777777889


Q ss_pred             cHHHHHHHHhhcCCCchhhHH
Q 026668          207 GIEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       207 Gle~Va~llKd~~vd~~vRlK  227 (235)
                      ++..+.++|++.  +.++|..
T Consensus       372 ~i~~L~~lL~~~--~~~v~~~  390 (528)
T 4b8j_A          372 IIGPLVNLLQTA--EFDIKKE  390 (528)
T ss_dssp             CHHHHHHHHHHS--CHHHHHH
T ss_pred             CHHHHHHHHhcC--CHHHHHH
Confidence            999999999876  6777765

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=88.08  E-value=1.5  Score=40.27  Aligned_cols=178  Identities=16%  Similarity=0.213  Sum_probs=100.2

Q ss_pred             hhhHHHHHHHHH-------------HHHHHHHHHHHHHhhhhhhc-ccchhHHhhc-hHHHHHHHHHhhhcccchhhhhc
Q 026668           25 ATAVGELANSLK-------------QQRVQREITLALRTGLRDAR-AEFSFLRVRG-LRSLLKILRSVAESDSTIHFFCQ   89 (235)
Q Consensus        25 ~~~v~elv~sl~-------------~qR~yRevtlaLr~gLRDa~-AeFSFlR~rg-Lr~ll~fLrs~a~sd~~i~LF~~   89 (235)
                      .+++.-|+.-|.             ...+.++.+++|+.=-++-. .-..+....| +..|.+.|+|  .+ ..+.-   
T Consensus       188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s--~~-~~v~~---  261 (458)
T 3nmz_A          188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS--ES-EDLQQ---  261 (458)
T ss_dssp             TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC--SC-HHHHH---
T ss_pred             CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC--CC-HHHHH---
Confidence            456666666663             35678899999987443322 2222334678 8888888875  11 11100   


Q ss_pred             cCCcCCccchhhhhccccc-cccccccccccccccccCc-ccc-cCCCchHHHHHHHHHhhhccccCcchHH-HhhhhhH
Q 026668           90 SQSVPELQVVPVLFQHSFK-EDSVDERVTSLDHIFTVDP-MRV-TSPSTDAEVALALRVLEGCCLLHRESAI-LAHKHKA  165 (235)
Q Consensus        90 sQs~~~lQvvPvLF~hsl~-~~~~~~~V~~l~~i~g~ep-~ki-tsp~Td~EvaLALrVLEGcCLlh~~s~~-~ah~~~a  165 (235)
                             +.+=+|..=|.. .++..+.|...   =|++| +++ .+.+++.-..-|++.|--+|-.+++.+. ++....+
T Consensus       262 -------~A~~aL~nLs~~~~~~~k~~I~~~---GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Ga  331 (458)
T 3nmz_A          262 -------VIASVLRNLSWRADVNSKKTLREV---GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA  331 (458)
T ss_dssp             -------HHHHHHHHHTSSCCHHHHHHHHHT---THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTH
T ss_pred             -------HHHHHHHHHhcCCCHHHHHHHHHc---CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCc
Confidence                   011222221211 00001111111   12334 453 3333445555677888777765545444 4447899


Q ss_pred             HHHHHHHHhhcCcc----chhh---HHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhc
Q 026668          166 IKILMNILSTRGAL----EQGA---CLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (235)
Q Consensus       166 v~VlldlL~arg~l----eq~a---cLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~  218 (235)
                      +..|+++|.....-    .+..   +|-.|-+.+.++++|...+-+++|+..++++|++.
T Consensus       332 l~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~  391 (458)
T 3nmz_A          332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH  391 (458)
T ss_dssp             HHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS
T ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC
Confidence            99999999865432    2332   33333334458999999999999999999999863

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=87.47  E-value=2.2  Score=39.07  Aligned_cols=196  Identities=12%  Similarity=0.088  Sum_probs=123.6

Q ss_pred             hhhhhHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhcccchhHHhhchHHHHHHHHHhhhcccchhhhh
Q 026668           23 AAATAVGELANSLKQ--------------QRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFC   88 (235)
Q Consensus        23 ~~~~~v~elv~sl~~--------------qR~yRevtlaLr~gLRDa~AeFSFlR~rgLr~ll~fLrs~a~sd~~i~LF~   88 (235)
                      ..++++--||+-|..              ..+..|-+|+|..=...---++...|..|+=.+|+-++..  .+-.+.+.+
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~  144 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAY--CETCWEWQE  144 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh--hHHHHHHHH
Confidence            346788888888885              5788899999988777667778888888888888877653  222445444


Q ss_pred             ccCCcCCc--------------cchhhhhccccccccccccccccccccccCc-cccc----------CCCchHH-HHHH
Q 026668           89 QSQSVPEL--------------QVVPVLFQHSFKEDSVDERVTSLDHIFTVDP-MRVT----------SPSTDAE-VALA  142 (235)
Q Consensus        89 ~sQs~~~l--------------QvvPvLF~hsl~~~~~~~~V~~l~~i~g~ep-~kit----------sp~Td~E-vaLA  142 (235)
                      +.=+..|-              |-|=.|..-|.. ++..+.|...+   |++| +++-          +++.+.+ ..-|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G---~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~A  220 (458)
T 3nmz_A          145 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELG---GLQAIAELLQVDCEMYGLTNDHYSITLRRYA  220 (458)
T ss_dssp             TTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTT---HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred             hhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCC---CHHHHHHHHhhhhcccccccCCCCHHHHHHH
Confidence            32111221              222235444432 22122222221   2233 2221          1222222 2346


Q ss_pred             HHHhhhccccCcchHHHhh-hhhHHHHHHHHHhhcCccchhhHHHHHHHHHh-CCchhhhhhhhhccHHHHHHHHhhcCC
Q 026668          143 LRVLEGCCLLHRESAILAH-KHKAIKILMNILSTRGALEQGACLDALTSLML-DSSANQLDFEACNGIEEVAELIRDKQV  220 (235)
Q Consensus       143 LrVLEGcCLlh~~s~~~ah-~~~av~VlldlL~arg~leq~acLDaLl~lmv-DSs~Nq~dFE~~~Gle~Va~llKd~~v  220 (235)
                      ..+|.-.|......+.... ...+|..|+.+|....+-.|....-+|--+=. |++.|...+-+.+||...+++|.+.+ 
T Consensus       221 a~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-  299 (458)
T 3nmz_A          221 GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-  299 (458)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-
T ss_pred             HHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-
Confidence            7788888988887777664 45569999999987666667777777766655 35778888899999999999876654 


Q ss_pred             Cchhh
Q 026668          221 DENLR  225 (235)
Q Consensus       221 d~~vR  225 (235)
                      +++++
T Consensus       300 ~~~v~  304 (458)
T 3nmz_A          300 KESTL  304 (458)
T ss_dssp             SHHHH
T ss_pred             CHHHH
Confidence            44444

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=87.17  E-value=1.5  Score=38.88  Aligned_cols=79  Identities=16%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             HHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhcCC
Q 026668          142 ALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQV  220 (235)
Q Consensus       142 ALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~v  220 (235)
                      |.++|--.|-..++.+...-+..|+..|+.+|....+-.|..|+-+|--|-.|++.++..+-+.+|+..++.+++....
T Consensus       121 Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~  199 (510)
T 3ul1_B          121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL  199 (510)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCG
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccc
Confidence            5566665555566666677788899999999988778889999999999999999999999999999999999986543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=86.90  E-value=0.66  Score=40.70  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=73.5

Q ss_pred             CchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhc----C-------ccchhhHHHHHHHHHhCCchhhhhh
Q 026668          134 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR----G-------ALEQGACLDALTSLMLDSSANQLDF  202 (235)
Q Consensus       134 ~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~ar----g-------~leq~acLDaLl~lmvDSs~Nq~dF  202 (235)
                      |++.++..|++.|.-.+-- ++++....+..+++.|+++|...    |       +-.|....-+|--+-.++++|...+
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5678889999999988865 89999999999999999999631    1       3356778888888888888888888


Q ss_pred             hhhcc-HHHHHHHHhhcCCCchhhHH
Q 026668          203 EACNG-IEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       203 E~~~G-le~Va~llKd~~vd~~vRlK  227 (235)
                      ....| |...+++|+.  -+++++..
T Consensus       123 ~~~~GaIp~LV~LL~s--~~~~v~~~  146 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKS--ESEDLQQV  146 (354)
T ss_dssp             HHCHHHHHHHHHGGGC--SCHHHHHH
T ss_pred             HHcCCcHHHHHHHHCC--CCHHHHHH
Confidence            78889 9999999984  34555544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=82.33  E-value=1.9  Score=37.78  Aligned_cols=188  Identities=12%  Similarity=0.130  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHhhhhhhc-ccchhHHhhc-hHHHHHHHHHhhh---cccchhhhhc--------cCCcCCccchhhhhc
Q 026668           38 QRVQREITLALRTGLRDAR-AEFSFLRVRG-LRSLLKILRSVAE---SDSTIHFFCQ--------SQSVPELQVVPVLFQ  104 (235)
Q Consensus        38 qR~yRevtlaLr~gLRDa~-AeFSFlR~rg-Lr~ll~fLrs~a~---sd~~i~LF~~--------sQs~~~lQvvPvLF~  104 (235)
                      ..+.++.+++|+.=-++-. .-..+....| +..|++.|+|--.   .+..-.|.+-        .+.|.+...||.|.+
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            4578888888886443322 2222334678 8888888875100   0111111111        133455667888877


Q ss_pred             ccccccc--ccc----cccccc--------c---ccccCc--ccccCCCchH---HH-HHHHHHhhhccc---cCcchHH
Q 026668          105 HSFKEDS--VDE----RVTSLD--------H---IFTVDP--MRVTSPSTDA---EV-ALALRVLEGCCL---LHRESAI  158 (235)
Q Consensus       105 hsl~~~~--~~~----~V~~l~--------~---i~g~ep--~kitsp~Td~---Ev-aLALrVLEGcCL---lh~~s~~  158 (235)
                      --++...  +..    .+.++.        .   ..|.=|  +++-..+++.   +| .-|..+|.-+|-   .+++.+.
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  257 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  257 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            5332211  100    001110        1   122222  3333333332   33 345555555554   4677788


Q ss_pred             HhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhcCCCchhhHH
Q 026668          159 LAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       159 ~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~vd~~vRlK  227 (235)
                      ..-++.++..|+++|.....-.|..+.-+|--+-..+++|+..+-+++|+...+++|+..  ++++|..
T Consensus       258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~  324 (354)
T 3nmw_A          258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMG  324 (354)
T ss_dssp             HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHH
T ss_pred             HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHH
Confidence            888899999999999877777888888888877768899999999999999999999864  5566654

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=81.36  E-value=5  Score=33.09  Aligned_cols=87  Identities=14%  Similarity=0.052  Sum_probs=64.2

Q ss_pred             HHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhC-CchhhhhhhhhccHHHHHHHHhh
Q 026668          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLD-SSANQLDFEACNGIEEVAELIRD  217 (235)
Q Consensus       139 vaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvD-Ss~Nq~dFE~~~Gle~Va~llKd  217 (235)
                      ..-|++.|..+|-.++......-+..++..++++|....+-.+.++.-+|-.+..+ ++++...+-+.+++..+.+++++
T Consensus       293 r~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~  372 (450)
T 2jdq_A          293 KKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV  372 (450)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC
Confidence            34457777666655555444445567899999999987777788888888888777 55666667778899999999997


Q ss_pred             cCCCchhhHH
Q 026668          218 KQVDENLRFM  227 (235)
Q Consensus       218 ~~vd~~vRlK  227 (235)
                      .  +.++|..
T Consensus       373 ~--~~~v~~~  380 (450)
T 2jdq_A          373 M--DSKIVQV  380 (450)
T ss_dssp             S--CHHHHHH
T ss_pred             C--CHHHHHH
Confidence            5  6677765

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=81.33  E-value=1.1  Score=44.25  Aligned_cols=187  Identities=18%  Similarity=0.269  Sum_probs=121.0

Q ss_pred             hhhHHHHHHHHHHHHH---HHHHHHHHHhhhhhhcccchhHHhhchHHHHHHHHHhhhc--------ccchhhhhccCCc
Q 026668           25 ATAVGELANSLKQQRV---QREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAES--------DSTIHFFCQSQSV   93 (235)
Q Consensus        25 ~~~v~elv~sl~~qR~---yRevtlaLr~gLRDa~AeFSFlR~rgLr~ll~fLrs~a~s--------d~~i~LF~~sQs~   93 (235)
                      +..+..|++-++.--+   .|+--++||.=-||.++++.   .+||+.|+..|+.-.+-        |.-..+|+....=
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~   96 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE   96 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence            3445555554443322   36777888888888888766   78999999988764321        2223678754421


Q ss_pred             C----------------------Cccchhhhhccccccccccccccc---c------------ccc----cccCc-cccc
Q 026668           94 P----------------------ELQVVPVLFQHSFKEDSVDERVTS---L------------DHI----FTVDP-MRVT  131 (235)
Q Consensus        94 ~----------------------~lQvvPvLF~hsl~~~~~~~~V~~---l------------~~i----~g~ep-~kit  131 (235)
                      +                      +-.-||.|++. |+.....-++.+   +            ..|    -|+.. |.+-
T Consensus        97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL  175 (651)
T 3grl_A           97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL  175 (651)
T ss_dssp             -----------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred             cccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence            1                      12236666653 221110001111   1            111    12222 2222


Q ss_pred             CCCchHHHH--HHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCc----cchhhHHHHHHHHHhCCchhhhhhhhh
Q 026668          132 SPSTDAEVA--LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGA----LEQGACLDALTSLMLDSSANQLDFEAC  205 (235)
Q Consensus       132 sp~Td~Eva--LALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~----leq~acLDaLl~lmvDSs~Nq~dFE~~  205 (235)
                      +-+  .|+.  -|+-+|.-.+--++....+..--+|.+.+++|+...|.    ....-||-.+-.++=+.++||.-|-+.
T Consensus       176 ~d~--rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt  253 (651)
T 3grl_A          176 ADS--REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG  253 (651)
T ss_dssp             GCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             hCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence            222  2443  35778888888899998999999999999999999776    456889999999999999999999999


Q ss_pred             ccHHHHHHHHhh
Q 026668          206 NGIEEVAELIRD  217 (235)
Q Consensus       206 ~Gle~Va~llKd  217 (235)
                      +++.+++.+++.
T Consensus       254 ~~i~~L~~LL~~  265 (651)
T 3grl_A          254 SYIQRMKPWFEV  265 (651)
T ss_dssp             TCGGGGGGGGCC
T ss_pred             CCHHHHHHHhCC
Confidence            999999999974

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=81.07  E-value=3.4  Score=36.06  Aligned_cols=85  Identities=11%  Similarity=-0.003  Sum_probs=63.6

Q ss_pred             HHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCc---hhhhhhhhhccHHHHHHHHhh
Q 026668          141 LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSS---ANQLDFEACNGIEEVAELIRD  217 (235)
Q Consensus       141 LALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs---~Nq~dFE~~~Gle~Va~llKd  217 (235)
                      -|++.|--.|-.++......-...+++.|+++|....+-.|.+++.+|-.+..+.+   ++...+.+.+++..++.++++
T Consensus       360 ~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~  439 (530)
T 1wa5_B          360 EACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI  439 (530)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence            34555555554444443333456789999999988777889999999988887643   677778888999999999987


Q ss_pred             cCCCchhhHH
Q 026668          218 KQVDENLRFM  227 (235)
Q Consensus       218 ~~vd~~vRlK  227 (235)
                      .  +.++|..
T Consensus       440 ~--~~~v~~~  447 (530)
T 1wa5_B          440 A--DNRIIEV  447 (530)
T ss_dssp             C--CHHHHHH
T ss_pred             C--CHHHHHH
Confidence            5  7778766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.83
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	95.53
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	95.24
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	93.25
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	92.53
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.68
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	90.62
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	84.97
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	82.28

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.0018  Score=50.15  Aligned_cols=90  Identities=16%  Similarity=0.176  Sum_probs=78.5

Q ss_pred             hHH-HHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcC-ccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHH
Q 026668          136 DAE-VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRG-ALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAE  213 (235)
Q Consensus       136 d~E-vaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg-~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~  213 (235)
                      |.+ -.-|..+|--+|-..+.++.....+.++..++++|.... +-.+..++.||-++.-++++|+..|-..+|+..+++
T Consensus        72 ~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~  151 (264)
T d1xqra1          72 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR  151 (264)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHH
Confidence            444 456789999899889999999999999999999997654 557899999999999999999999999999999999


Q ss_pred             HHhhcCCCchhhHH
Q 026668          214 LIRDKQVDENLRFM  227 (235)
Q Consensus       214 llKd~~vd~~vRlK  227 (235)
                      +++..  +++++.+
T Consensus       152 lL~~~--~~~~~~~  163 (264)
T d1xqra1         152 AMQQQ--VQKLKVK  163 (264)
T ss_dssp             HHHSS--CHHHHHH
T ss_pred             HHhcC--chHHHHH
Confidence            99864  6777777

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0025  Score=47.87  Aligned_cols=88  Identities=22%  Similarity=0.307  Sum_probs=76.7

Q ss_pred             HHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhc
Q 026668          139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK  218 (235)
Q Consensus       139 vaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~  218 (235)
                      -..|.+.|.=.|.-+++.+....+..+|..|+++|....+-.|.+++.+|-.+..++++|+..+-+.+|++.+..+++..
T Consensus        19 ~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~   98 (457)
T d1xm9a1          19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhcc
Confidence            35678999999998888888888999999999999877788899999999999999999999999999999999999875


Q ss_pred             CCCchhhHH
Q 026668          219 QVDENLRFM  227 (235)
Q Consensus       219 ~vd~~vRlK  227 (235)
                      + +.++|..
T Consensus        99 ~-~~~~~~~  106 (457)
T d1xm9a1          99 G-NAEIQKQ  106 (457)
T ss_dssp             C-CHHHHHH
T ss_pred             C-cHHHHHH
Confidence            4 4455543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0079  Score=49.28  Aligned_cols=92  Identities=15%  Similarity=0.206  Sum_probs=78.2

Q ss_pred             CchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHH
Q 026668          134 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAE  213 (235)
Q Consensus       134 ~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~  213 (235)
                      +.++-...|.+.|.-+|.-++.++....+..+++.|+++|....+-.|..+..+|-.+..+++.+...+.+..|+...++
T Consensus       113 ~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  192 (529)
T d1jdha_         113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN  192 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHH
Confidence            34455667889999999999999999999999999999998777778899999999898899999999999999999999


Q ss_pred             HHhhcCCCchhhH
Q 026668          214 LIRDKQVDENLRF  226 (235)
Q Consensus       214 llKd~~vd~~vRl  226 (235)
                      +++... ++.++-
T Consensus       193 ll~~~~-~~~~~~  204 (529)
T d1jdha_         193 IMRTYT-YEKLLW  204 (529)
T ss_dssp             HHHHCC-CHHHHH
T ss_pred             HHHhhh-hHHHHH
Confidence            998755 444543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0083  Score=49.16  Aligned_cols=85  Identities=15%  Similarity=0.237  Sum_probs=71.0

Q ss_pred             HHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhcC
Q 026668          140 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ  219 (235)
Q Consensus       140 aLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~  219 (235)
                      ..|.+.|.-+|. |.+++....++.++..++.+|....+-.|..|.-+|-.+..|++.+++.|.+.+|++.+++++++..
T Consensus        78 ~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~  156 (529)
T d1jdha_          78 RCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN  156 (529)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC
T ss_pred             HHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC
Confidence            346677777784 7777777778899999999998877889999999999999999999999999999999999997643


Q ss_pred             CCchhhHH
Q 026668          220 VDENLRFM  227 (235)
Q Consensus       220 vd~~vRlK  227 (235)
                        .+++..
T Consensus       157 --~~~~~~  162 (529)
T d1jdha_         157 --VKFLAI  162 (529)
T ss_dssp             --HHHHHH
T ss_pred             --hHHHHH
Confidence              455543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.029  Score=43.05  Aligned_cols=86  Identities=9%  Similarity=0.084  Sum_probs=73.8

Q ss_pred             HHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHHhhcC
Q 026668          140 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ  219 (235)
Q Consensus       140 aLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~llKd~~  219 (235)
                      .-|+..|...|-.++..+....+..++++++++|.....-.|..++-+|-.+...++++...|.+.+|++.++.++++. 
T Consensus       120 ~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~-  198 (264)
T d1xqra1         120 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE-  198 (264)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC-
T ss_pred             HHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC-
Confidence            4467777777888888888888889999999999888777888888888888889999999999999999999999764 


Q ss_pred             CCchhhHH
Q 026668          220 VDENLRFM  227 (235)
Q Consensus       220 vd~~vRlK  227 (235)
                       +.++|.+
T Consensus       199 -~~~~~~~  205 (264)
T d1xqra1         199 -HSPFHEH  205 (264)
T ss_dssp             -CSTHHHH
T ss_pred             -CHHHHHH
Confidence             6778876

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.25  E-value=0.071  Score=41.38  Aligned_cols=85  Identities=15%  Similarity=0.073  Sum_probs=71.3

Q ss_pred             HHHH-HHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHHH
Q 026668          137 AEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI  215 (235)
Q Consensus       137 ~Eva-LALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~ll  215 (235)
                      .+|- -|.+.|.-+|-..+..+...-...++..++.+|....+-.+..|+.+|--+..|++.+...+-..+|++....++
T Consensus        71 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l  150 (434)
T d1q1sc_          71 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL  150 (434)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHH
Confidence            4543 477888888877777777777888999999999888788889999999999999999999999999999999998


Q ss_pred             hhcCCC
Q 026668          216 RDKQVD  221 (235)
Q Consensus       216 Kd~~vd  221 (235)
                      .....+
T Consensus       151 ~~~~~~  156 (434)
T d1q1sc_         151 AVPDLS  156 (434)
T ss_dssp             CSSCGG
T ss_pred             Hhcccc
Confidence            765543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.53  E-value=0.13  Score=41.59  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=71.8

Q ss_pred             hHHHH-HHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhhhhhhhccHHHHHHH
Q 026668          136 DAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL  214 (235)
Q Consensus       136 d~Eva-LALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~Va~l  214 (235)
                      |.++- .|+++|--+|...+..+.......++..++.+|.....-.+..|+-+|--+.-|++.+...+-+++|++.+..+
T Consensus       133 ~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~l  212 (503)
T d1wa5b_         133 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL  212 (503)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhh
Confidence            44553 47899988888777777778888899999999998877788999999999999999999999999999999999


Q ss_pred             Hhhc
Q 026668          215 IRDK  218 (235)
Q Consensus       215 lKd~  218 (235)
                      +.+.
T Consensus       213 l~~~  216 (503)
T d1wa5b_         213 FNSN  216 (503)
T ss_dssp             GGSC
T ss_pred             cccC
Confidence            8754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.68  E-value=0.52  Score=36.28  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=75.0

Q ss_pred             ccccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHHhCCchhhh-hhhhhc
Q 026668          128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQL-DFEACN  206 (235)
Q Consensus       128 ~kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lmvDSs~Nq~-dFE~~~  206 (235)
                      +++-+-+.++-..-|+..|-.+|-.+..+.....++.+++.++++|....+-.+..|.=++..+..+++..+. .+-+.+
T Consensus       278 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~  357 (434)
T d1q1sc_         278 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG  357 (434)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            3444444444456788889999998999998888999999999999998888889999888888877665544 455677


Q ss_pred             cHHHHHHHHhhcCCCchhhHH
Q 026668          207 GIEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       207 Gle~Va~llKd~~vd~~vRlK  227 (235)
                      +++.++++++..  |++++..
T Consensus       358 ~i~~L~~ll~~~--d~~~~~~  376 (434)
T d1q1sc_         358 IIEPLMNLLSAK--DTKIIQV  376 (434)
T ss_dssp             CHHHHHHHTTSS--CHHHHHH
T ss_pred             cHHHHHHHhcCC--CHHHHHH
Confidence            889999988754  5666644

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.34  Score=35.85  Aligned_cols=83  Identities=10%  Similarity=0.089  Sum_probs=59.9

Q ss_pred             HHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCcc------chhhHHHHHHHHHhCCchhhhhhhhhccHHHH
Q 026668          138 EVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGAL------EQGACLDALTSLMLDSSANQLDFEACNGIEEV  211 (235)
Q Consensus       138 EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~l------eq~acLDaLl~lmvDSs~Nq~dFE~~~Gle~V  211 (235)
                      -..-+++.|-..+. ++..+....+ .+++-++++|......      .+.+++-+|--++.++++|...+.+..|++.+
T Consensus       347 v~~~a~~~l~~La~-~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L  424 (457)
T d1xm9a1         347 VVRSGASLLSNMSR-HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI  424 (457)
T ss_dssp             HHHHHHHHHHHHHT-SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-ChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHH
Confidence            34445666655554 4444444443 4788888888653221      45678888888999999999999999999999


Q ss_pred             HHHHhhcCCCc
Q 026668          212 AELIRDKQVDE  222 (235)
Q Consensus       212 a~llKd~~vd~  222 (235)
                      ..++++.+-++
T Consensus       425 ~~l~~~~~~~~  435 (457)
T d1xm9a1         425 INLCRSSASPK  435 (457)
T ss_dssp             HHHHHCTTCHH
T ss_pred             HHHHhCCCCHH
Confidence            99999876554

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.97  E-value=1.1  Score=35.90  Aligned_cols=88  Identities=18%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             HHHHHHHHhhhccccCcchHHHhhhhhHHHHHHHHHhhcCccchhhHHHHHHHHH-----------hCCchhhhhhhhhc
Q 026668          138 EVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLM-----------LDSSANQLDFEACN  206 (235)
Q Consensus       138 EvaLALrVLEGcCLlh~~s~~~ah~~~av~VlldlL~arg~leq~acLDaLl~lm-----------vDSs~Nq~dFE~~~  206 (235)
                      |.+.++.=+--.+..++..-...-++.+++.++++|-..-+-....+|++|.-+|           ..-.+....||++.
T Consensus       391 ~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g  470 (503)
T d1wa5b_         391 EACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG  470 (503)
T ss_dssp             HHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCC
Confidence            4444444333223344555556667889999999997665556688999998876           22344556799999


Q ss_pred             cHHHHHHHHhhcCCCchhhHH
Q 026668          207 GIEEVAELIRDKQVDENLRFM  227 (235)
Q Consensus       207 Gle~Va~llKd~~vd~~vRlK  227 (235)
                      |++++-.+.  .+-+++++-|
T Consensus       471 ~~~~i~~Lq--~~~~~~i~~~  489 (503)
T d1wa5b_         471 GMEKIFNCQ--QNENDKIYEK  489 (503)
T ss_dssp             HHHHHHGGG--GCSCHHHHHH
T ss_pred             CHHHHHHHH--cCCCHHHHHH
Confidence            999986653  2346778766

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=0.9  Score=33.89  Aligned_cols=81  Identities=23%  Similarity=0.317  Sum_probs=56.6

Q ss_pred             cccCCCchHHHHHHHHHhhhccccCcchHHHhhhhhHHHH----HHHHHhhc------CccchhhHHHHHHHHHhCCchh
Q 026668          129 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKI----LMNILSTR------GALEQGACLDALTSLMLDSSAN  198 (235)
Q Consensus       129 kitsp~Td~EvaLALrVLEGcCLlh~~s~~~ah~~~av~V----lldlL~ar------g~leq~acLDaLl~lmvDSs~N  198 (235)
                      ||.++ ...+.-+||.+|+-|.-++   -.--|...|-+-    |+++++.+      .+..+.-+|..+-+.       
T Consensus        46 rl~~~-n~~~~l~aL~LLe~~vkNc---G~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~W-------  114 (143)
T d1mhqa_          46 KIQSP-QEKEALYALTVLEMCMNHC---GEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW-------  114 (143)
T ss_dssp             HHTCS-SHHHHHHHHHHHHHHHHHS---CHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH-------
T ss_pred             HHcCC-CHHHHHHHHHHHHHHHHHc---CHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH-------
Confidence            45554 4678889999999998865   223344444444    55555433      223567788887776       


Q ss_pred             hhhhhhhccHHHHHHHHhhcCC
Q 026668          199 QLDFEACNGIEEVAELIRDKQV  220 (235)
Q Consensus       199 q~dFE~~~Gle~Va~llKd~~v  220 (235)
                      ...|...+++..+-+.||..|+
T Consensus       115 a~~f~~~~~~~~~y~~Lk~~Gv  136 (143)
T d1mhqa_         115 TVWFPEDIKIRDAYQMLKKQGI  136 (143)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTS
T ss_pred             HHHcCCCchHHHHHHHHHHCCC
Confidence            5578899999999999999997