Citrus Sinensis ID: 026697

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
MLNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
ccccEEEEEcccccccccccccEEEEEcccccEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccEEEEcEEccccccHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccEEEcccccEEEEEccccccccccccccccccccccEEEEEEEEEccccccc
ccHHHHHHcEEcccccccccccEEEEEccccEEEEEcccccHHHHHHHHHHHcHHHHHcEEEccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccHHcccccccHEEEEHEEHccccccccccccccccccccccccccHHHHHHcccEEccccccEEEEEEcccccccccccccccccEEEccEEEEcEEEEEccccc
MLNCFVSFFLCrsegdegraEQWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflarGRDKIIRDIEKRIadftffplengeglqvlhyeagqkyephfdyfmdefntknggQRMATVLMYLSDveeggetvfpnaqgnisavpwwnelsecgktglsikpkmgDALLFWsmkpdasldpsslhggcpvikgnkwsstKWIRVNEYKV
MLNCFVSFFLcrsegdegrAEQWVEVISWEPRAFVYHNFLSKEECEYLINLatphmrkstvvdsdtgkskdsrvrtssgtflargrdkiIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSlhggcpvikgnkwsstkwirvneykv
MLNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLArgrdkiirdiekriADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
**NCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATP**************************FLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKP*******SLHGGCPVIKGNKWSSTKWIRVN****
MLNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRK**************RVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK*
MLNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMR*********************GTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
MLNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query235 2.2.26 [Sep-21-2011]
Q20065539 Prolyl 4-hydroxylase subu yes no 0.791 0.345 0.354 8e-30
P54001534 Prolyl 4-hydroxylase subu yes no 0.765 0.337 0.354 9e-30
P16924516 Prolyl 4-hydroxylase subu yes no 0.765 0.348 0.354 2e-28
Q60715534 Prolyl 4-hydroxylase subu yes no 0.765 0.337 0.344 2e-28
Q5RAG8534 Prolyl 4-hydroxylase subu yes no 0.765 0.337 0.339 7e-28
P13674534 Prolyl 4-hydroxylase subu yes no 0.765 0.337 0.339 7e-28
Q1RMU3534 Prolyl 4-hydroxylase subu yes no 0.765 0.337 0.339 1e-27
Q5ZLK5534 Prolyl 4-hydroxylase subu no no 0.782 0.344 0.338 4e-26
Q10576559 Prolyl 4-hydroxylase subu no no 0.817 0.343 0.317 3e-25
O15460535 Prolyl 4-hydroxylase subu no no 0.757 0.332 0.328 3e-25
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans GN=phy-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 109/209 (52%), Gaps = 23/209 (11%)

Query: 24  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 83
           VE++ ++P A ++ N +   E E +  LA+P ++++TV +S TG+ + +  R S   +L 
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377

Query: 84  RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 139
              D +I  + +RI DFT       E LQV +Y  G  Y+PHFD+   E    F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437

Query: 140 QRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 199
            R+ATVL Y+S  E GG TVF             N L      G ++ P   DAL ++++
Sbjct: 438 NRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNL 478

Query: 200 KPDASLDPSSLHGGCPVIKGNKWSSTKWI 228
           + D   D  + H  CPV+ G KW S KWI
Sbjct: 479 RRDGEGDLRTRHAACPVLLGVKWVSNKWI 507
Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 2
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2 SV=1 Back     alignment and function description
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2 Back     alignment and function description
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2 SV=1 Back     alignment and function description
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans GN=dpy-18 PE=1 SV=2 Back     alignment and function description
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
225468574288 PREDICTED: prolyl 4-hydroxylase subunit 0.995 0.812 0.820 1e-114
147800995288 hypothetical protein VITISV_014644 [Viti 0.995 0.812 0.820 1e-114
224133600291 predicted protein [Populus trichocarpa] 0.936 0.756 0.863 1e-114
255579590287 prolyl 4-hydroxylase alpha subunit, puta 0.944 0.773 0.851 1e-113
357483925289 Prolyl 4-hydroxylase alpha-2 subunit [Me 0.995 0.809 0.811 1e-112
356540840290 PREDICTED: prolyl 4-hydroxylase subunit 0.948 0.768 0.834 1e-111
449491267287 PREDICTED: prolyl 4-hydroxylase subunit 0.936 0.766 0.840 1e-111
449434114287 PREDICTED: prolyl 4-hydroxylase subunit 0.936 0.766 0.840 1e-111
240256489289 iron ion binding / oxidoreductase/ oxido 0.995 0.809 0.807 1e-111
21537370287 putative prolyl 4-hydroxylase, alpha sub 0.953 0.780 0.830 1e-110
>gi|225468574|ref|XP_002263060.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Vitis vinifera] gi|296084059|emb|CBI24447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/234 (82%), Positives = 215/234 (91%)

Query: 2   LNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTV 61
           L+  V   + RS+G++G+ E W EVISWEPRAFVYHNFLSK+ECEYLI LA PHM+KSTV
Sbjct: 55  LSTIVHRTVERSDGNDGKGEPWSEVISWEPRAFVYHNFLSKDECEYLIKLAKPHMQKSTV 114

Query: 62  VDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQK 121
           VDS TGKSKDSRVRTSSGTFL RG+DKIIR IEKR++DFTF P+E+GEGLQ+LHYE GQK
Sbjct: 115 VDSSTGKSKDSRVRTSSGTFLTRGQDKIIRGIEKRLSDFTFLPVEHGEGLQILHYEVGQK 174

Query: 122 YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGK 181
           YEPH+DYF+D++NTKNGGQRMATVLMYLSDVEEGGETVFP A+GN S+VPWWNELS+CGK
Sbjct: 175 YEPHYDYFLDDYNTKNGGQRMATVLMYLSDVEEGGETVFPAAKGNFSSVPWWNELSDCGK 234

Query: 182 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV 235
            GLS+KPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK+
Sbjct: 235 EGLSVKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKI 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147800995|emb|CAN64470.1| hypothetical protein VITISV_014644 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133600|ref|XP_002327635.1| predicted protein [Populus trichocarpa] gi|222836720|gb|EEE75113.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579590|ref|XP_002530636.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] gi|223529809|gb|EEF31744.1| prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357483925|ref|XP_003612249.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] gi|355513584|gb|AES95207.1| Prolyl 4-hydroxylase alpha-2 subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|356540840|ref|XP_003538892.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1 [Glycine max] Back     alignment and taxonomy information
>gi|449491267|ref|XP_004158845.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434114|ref|XP_004134841.1| PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240256489|ref|NP_201407.4| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] gi|332010770|gb|AED98153.1| iron ion binding / oxidoreductase/ oxidoreductase protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query235
TAIR|locus:2156852289 AT5G66060 [Arabidopsis thalian 0.995 0.809 0.756 3.7e-96
TAIR|locus:2012903287 AT1G20270 [Arabidopsis thalian 0.953 0.780 0.772 9.7e-96
TAIR|locus:2827906291 P4H5 "prolyl 4-hydroxylase 5" 0.948 0.766 0.75 5e-92
TAIR|locus:2125329290 AT4G35810 [Arabidopsis thalian 0.940 0.762 0.730 1.4e-87
TAIR|locus:2144960298 AT5G18900 [Arabidopsis thalian 0.893 0.704 0.523 4.6e-57
TAIR|locus:2088892288 AT3G28490 [Arabidopsis thalian 0.876 0.715 0.533 5.3e-56
TAIR|locus:2081106299 P4H2 "prolyl 4-hydroxylase 2" 0.893 0.702 0.523 1.1e-55
TAIR|locus:2041001283 AT-P4H-1 "P4H isoform 1" [Arab 0.834 0.692 0.523 3.2e-49
TAIR|locus:2118889288 AT4G33910 [Arabidopsis thalian 0.897 0.732 0.385 1.3e-38
TAIR|locus:2125344272 AT4G35820 [Arabidopsis thalian 0.574 0.496 0.522 5.8e-34
TAIR|locus:2156852 AT5G66060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 177/234 (75%), Positives = 195/234 (83%)

Query:     2 LNCFVSFFLCRSEGDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTV 61
             L   V   L RS  D+ + E+WVE+ISWEPRA VYHNFL+KEEC+YLI LA PHM KSTV
Sbjct:    56 LTSIVRKTLQRSGEDDSKNERWVEIISWEPRASVYHNFLTKEECKYLIELAKPHMEKSTV 115

Query:    62 VDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQK 121
             VD  TGKS DSRVRTSSGTFLA              +DFTF P+E+GEGLQVLHYE GQK
Sbjct:   116 VDEKTGKSTDSRVRTSSGTFLARGRDKTIREIEKRISDFTFIPVEHGEGLQVLHYEIGQK 175

Query:   122 YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGK 181
             YEPH+DYFMDE+NT+NGGQR+ATVLMYLSDVEEGGETVFP A+GN SAVPWWNELSECGK
Sbjct:   176 YEPHYDYFMDEYNTRNGGQRIATVLMYLSDVEEGGETVFPAAKGNYSAVPWWNELSECGK 235

Query:   182 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYKV 235
              GLS+KPKMGDALLFWSM PDA+LDPSSLHGGC VIKGNKWSSTKW+RV+EYKV
Sbjct:   236 GGLSVKPKMGDALLFWSMTPDATLDPSSLHGGCAVIKGNKWSSTKWLRVHEYKV 289
GO:0005506 "iron ion binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS
GO:0031418 "L-ascorbic acid binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2012903 AT1G20270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827906 P4H5 "prolyl 4-hydroxylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125329 AT4G35810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144960 AT5G18900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088892 AT3G28490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081106 P4H2 "prolyl 4-hydroxylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041001 AT-P4H-1 "P4H isoform 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118889 AT4G33910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125344 AT4G35820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00013719001
SubName- Full=Chromosome undetermined scaffold_533, whole genome shotgun sequence; (288 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00038542001
RecName- Full=Proline iminopeptidase; EC=3.4.11.5; (331 aa)
     •  0.899
GSVIVG00038134001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (500 aa)
     •  0.899
GSVIVG00000690001
RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
PLN00052310 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisio 3e-85
smart00702165 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subun 8e-50
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 8e-12
pfam1364093 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase su 4e-08
COG3128229 COG3128, PiuC, Uncharacterized iron-regulated prot 0.003
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
 Score =  255 bits (652), Expect = 3e-85
 Identities = 115/211 (54%), Positives = 149/211 (70%), Gaps = 1/211 (0%)

Query: 24  VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 83
           V+ +SW+PR FVY  FLS  EC++L+ LA   +++S V D+ +GKS  S VRTSSG FL 
Sbjct: 47  VKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLD 106

Query: 84  RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMA 143
           + +D ++  IE+RIA +TF P EN E +Q+L YE GQKYEPHFDYF D+ N   GG R A
Sbjct: 107 KRQDPVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYA 166

Query: 144 TVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDA 203
           TVLMYLS V++GGETVFPNA+G  +  P  +  SEC   GL++KP  GDA+LF+S+  D 
Sbjct: 167 TVLMYLSTVDKGGETVFPNAEGWENQ-PKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDG 225

Query: 204 SLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 234
             DP SLHG CPVI+G KWS+ KWI +  Y+
Sbjct: 226 VPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256

Length = 310
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|225670 COG3128, PiuC, Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 235
PLN00052310 prolyl 4-hydroxylase; Provisional 100.0
KOG1591289 consensus Prolyl 4-hydroxylase alpha subunit [Amin 100.0
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 100.0
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 99.97
PHA02813 354 hypothetical protein; Provisional 99.81
PHA02869 418 C4L/C10L-like gene family protein; Provisional 99.8
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 99.7
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 99.7
KOG3710280 consensus EGL-Nine (EGLN) protein [Signal transduc 99.19
PF1366170 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily 98.76
PF03336 339 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR 98.75
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 98.6
COG3751252 EGL-9 Predicted proline hydroxylase [Posttranslati 98.54
TIGR02408277 ectoine_ThpD ectoine hydroxylase. Both ectoine and 98.31
PHA02866 333 Hypothetical protein; Provisional 98.18
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 98.04
PF05721211 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: 98.01
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 97.92
KOG3844 476 consensus Predicted component of NuA3 histone acet 97.9
TIGR01762288 chlorin-enz chlorinating enzymes. This model repre 97.47
TIGR02466201 conserved hypothetical protein. This family consis 97.41
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 97.09
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 96.85
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 96.63
COG3826236 Uncharacterized protein conserved in bacteria [Fun 96.33
KOG3200224 consensus Uncharacterized conserved protein [Funct 95.74
PHA02923 315 hypothetical protein; Provisional 95.62
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 91.6
PF06822 266 DUF1235: Protein of unknown function (DUF1235); In 91.27
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 90.67
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 88.63
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 88.02
PLN02216357 protein SRG1 87.33
PLN02904357 oxidoreductase 86.93
PF14033501 DUF4246: Protein of unknown function (DUF4246) 86.81
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 86.78
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.4
PLN02485329 oxidoreductase 86.39
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 86.22
PLN02947374 oxidoreductase 86.02
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 84.45
PLN02254358 gibberellin 3-beta-dioxygenase 83.23
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 82.57
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 81.4
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 81.4
COG5285299 Protein involved in biosynthesis of mitomycin anti 80.36
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-56  Score=388.16  Aligned_cols=217  Identities=53%  Similarity=0.947  Sum_probs=195.8

Q ss_pred             CCCCceEEEEEcCCCCEEEEcCCCCHHHHHHHHHHhCCCcceeeEEeCCCCCccccceeeeecccccCCCcHHHHHHHHH
Q 026697           17 EGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKR   96 (235)
Q Consensus        17 ~~~~~~~~e~ls~~P~i~~~~~~Ls~~Ec~~li~~~~~~~~~s~~~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~l~~r   96 (235)
                      ..-.+.|+|+||++|+|++|+||||++||++||+++++.+.++.++++.+|+...+++|+|.++|++..+++++++|++|
T Consensus        40 ~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~R  119 (310)
T PLN00052         40 PPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEER  119 (310)
T ss_pred             CCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999887766766778899999999987778999999999


Q ss_pred             HhhccCCCCCCCCCcEEEecCCCceeccccccccccccccCCCceEEEEEEEecCCCCCccccCCCCCCCCCCCCCcccc
Q 026697           97 IADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNEL  176 (235)
Q Consensus        97 i~~~~~~~~~~~e~~~v~rY~~G~~f~~H~D~~~~~~~~~~~~~R~~T~liYLNd~~~GGeT~Fp~~~~~~~~~~~~~~~  176 (235)
                      |++++++|..+.|++||+||++||+|++|+|++.+......+++|++|+|+||||+++||+|+||.+.. ....+.++.+
T Consensus       120 ia~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~  198 (310)
T PLN00052        120 IAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTF  198 (310)
T ss_pred             HHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccch
Confidence            999999999999999999999999999999998653333457899999999999999999999998742 1223445678


Q ss_pred             ccccCcCeeEecccccEEEEeecCCCCCCCCCCcccCCCCCcCeEeEEEeeecccccc
Q 026697          177 SECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK  234 (235)
Q Consensus       177 ~~c~~~~~~V~P~~G~alvF~n~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~~~~~~~  234 (235)
                      ++|.+.+++|+|++|+||+|+|+.++|..|+.++|+||||++|+||++|+|||..+|.
T Consensus       199 s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~  256 (310)
T PLN00052        199 SECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE  256 (310)
T ss_pred             hhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence            8999999999999999999999999999999999999999999999999999998874

>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PHA02813 hypothetical protein; Provisional Back     alignment and domain information
>PHA02869 C4L/C10L-like gene family protein; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms] Back     alignment and domain information
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02408 ectoine_ThpD ectoine hydroxylase Back     alignment and domain information
>PHA02866 Hypothetical protein; Provisional Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR01762 chlorin-enz chlorinating enzymes Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PHA02923 hypothetical protein; Provisional Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PF14033 DUF4246: Protein of unknown function (DUF4246) Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
2jij_A233 Crystal Structure Of The Apo Form Of Chlamydomonas 5e-65
3gze_A225 Algal Prolyl 4-Hydroxylase Complexed With Zinc And 6e-65
2jig_A224 Crystal Structure Of Chlamydomonas Reinhardtii Prol 7e-65
2v4a_A233 Crystal Structure Of The Semet-Labeled Prolyl-4 Hyd 1e-62
3itq_A216 Crystal Structure Of A Prolyl 4-Hydroxylase From Ba 1e-31
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 21  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 77
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 78  SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 135
           +GT+ A              A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 136 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 195
           ++GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W    SEC K GL++KP  GDAL+
Sbjct: 136 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 191
Query: 196 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 230
           F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 192 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And (Ser-Pro)5 Peptide Substrate Length = 225 Back     alignment and structure
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4 Hydroxylase Type I Complexed With Zinc And Pyridine-2,4- Dicarboxylate Length = 224 Back     alignment and structure
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4 Hydroxylase (P4h) Type I From Green Algae Chlamydomonas Reinhardtii. Length = 233 Back     alignment and structure
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus Anthracis Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query235
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 1e-104
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 2e-93
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 3e-13
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Length = 224 Back     alignment and structure
 Score =  299 bits (767), Expect = e-104
 Identities = 124/217 (57%), Positives = 157/217 (72%), Gaps = 6/217 (2%)

Query: 20  AEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSG 79
               V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS+G
Sbjct: 9   WRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTG 68

Query: 80  TFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KN 137
           T+ A+G D +I  IEKR+A  T  PLEN EGLQVLHY  GQKYEPH+DYF D  N   ++
Sbjct: 69  TWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEH 128

Query: 138 GGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 197
           GGQR+ T+LMYL+ VEEGGETV PNA+  ++   W    SEC K GL++KP  GDAL+F+
Sbjct: 129 GGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALMFY 184

Query: 198 SMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 234
           S+KPD S DP+SLHG CP +KG+KWS+TKWI V    
Sbjct: 185 SLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG 221
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Length = 216 Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Length = 243 Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Length = 247 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 100.0
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 99.92
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 99.29
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 98.7
2a1x_A308 Phytanoyl-COA dioxygenase; beta jelly roll, double 97.97
2rdq_A288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II 97.96
2fct_A313 Syringomycin biosynthesis enzyme 2; mononuclear ir 97.93
3emr_A310 ECTD; double stranded beta helix, oxidoreductase; 97.73
2opw_A291 Phyhd1 protein; double-stranded beta helix, oxygen 97.36
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 97.28
3gja_A319 CYTC3; halogenase, beta barrel, biosynthetic prote 97.12
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 96.84
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 96.81
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 96.73
3nnf_A344 CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependen 91.06
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 86.41
3pl0_A254 Uncharacterized protein; quorum sensing, biofilm f 82.33
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 81.05
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
Probab=100.00  E-value=1.3e-54  Score=362.45  Aligned_cols=214  Identities=57%  Similarity=1.001  Sum_probs=192.8

Q ss_pred             CCCCceEEEEEcCCCCEEEEcCCCCHHHHHHHHHHhCCCcceeeEEeCCCCCccccceeeeecccccCCCcHHHHHHHHH
Q 026697           17 EGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKR   96 (235)
Q Consensus        17 ~~~~~~~~e~ls~~P~i~~~~~~Ls~~Ec~~li~~~~~~~~~s~~~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~l~~r   96 (235)
                      ..+++.|+|+||++|+|++++||||++||++||+++++.+.++.+.++.+|....+.+|+|..+|++...++++++|++|
T Consensus         6 ~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~r   85 (224)
T 2jig_A            6 KEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKR   85 (224)
T ss_dssp             -CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHH
T ss_pred             ccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHH
Confidence            46789999999999999999999999999999999998888999888766666778899999999987668999999999


Q ss_pred             HhhccCCCCCCCCCcEEEecCCCceeccccccccccccc--cCCCceEEEEEEEecCCCCCccccCCCCCCCCCCCCCcc
Q 026697           97 IADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWN  174 (235)
Q Consensus        97 i~~~~~~~~~~~e~~~v~rY~~G~~f~~H~D~~~~~~~~--~~~~~R~~T~liYLNd~~~GGeT~Fp~~~~~~~~~~~~~  174 (235)
                      |.+++++|...+|++||+||.+|++|++|+|.+......  ..+++|++|+++||||+++||+|+||....    .+.|+
T Consensus        86 i~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~Fp~~~~----~~~~~  161 (224)
T 2jig_A           86 VAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVLPNAEQ----KVTGD  161 (224)
T ss_dssp             HHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEETTSSS----CCCST
T ss_pred             HHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeCCCccc----ccccc
Confidence            999999998889999999999999999999987643211  345789999999999999999999998642    24577


Q ss_pred             ccccccCcCeeEecccccEEEEeecCCCCCCCCCCcccCCCCCcCeEeEEEeeecccccc
Q 026697          175 ELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK  234 (235)
Q Consensus       175 ~~~~c~~~~~~V~P~~G~alvF~n~~~~g~~d~~~~H~g~pV~~G~K~i~~~W~~~~~~~  234 (235)
                      .+++|.+.+++|+|++|+||+|+|+.++|..|++++|+||||+.|+||++++||+..+|+
T Consensus       162 ~~~~c~~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV~~G~K~~~~~Wi~~~~~~  221 (224)
T 2jig_A          162 GWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHVAPIG  221 (224)
T ss_dssp             TSCTTGGGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCEEESEEEEEEEEEESSCCC
T ss_pred             cccccccCceEEecccCcEEEEEeeCCCCCCCCCCcccCCccccceEEEEEEeEEcCCcC
Confidence            888998889999999999999999999999999999999999999999999999999986
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9 Back     alignment and structure
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A* Back     alignment and structure
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens} Back     alignment and structure
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3pl0_A Uncharacterized protein; quorum sensing, biofilm formation, double-stranded beta-HELI structural genomics; HET: MSE; 1.91A {Methylibium petroleiphilum} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query235
d2a1xa1296 Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapie 98.06
d2fcta1308 Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudom 97.97
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 97.25
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 96.84
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 89.34
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 83.02
>d2a1xa1 b.82.2.9 (A:43-338) Phytanoyl-CoA dioxygenase, PhyH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: PhyH-like
domain: Phytanoyl-CoA dioxygenase, PhyH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.6e-05  Score=62.23  Aligned_cols=95  Identities=16%  Similarity=0.252  Sum_probs=56.4

Q ss_pred             eccccccccccccccCCCceEEEEEEEecCCC-CCccccC-CCCCCCCC---CCCCc--------cccccc--cCcCeeE
Q 026697          122 YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNIS---AVPWW--------NELSEC--GKTGLSI  186 (235)
Q Consensus       122 f~~H~D~~~~~~~~~~~~~R~~T~liYLNd~~-~GGeT~F-p~~~~~~~---~~~~~--------~~~~~c--~~~~~~V  186 (235)
                      ..||.|.....   .......+|+.++|.|+. +.|.+.+ |.......   ....+        ....+-  ....+.+
T Consensus       130 ~~wHqD~~~~~---~~~~~~~~~~wi~L~d~~~~nG~l~vipGSHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  206 (296)
T d2a1xa1         130 HPLHQDLHYFP---FRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHL  206 (296)
T ss_dssp             -CCBCGGGGCC---EECGGGEEEEEEESSCBCTTBTCEEECTTGGGSCCCCCCC-----------CCCCC-CCCSCCEEE
T ss_pred             CCcccCccccc---cCCccccceeeEeeeeccccccccceecccccccccccccccccCCcccccccccchhhccceEEe
Confidence            45899975421   123456899999999985 5566766 54321100   00000        000000  1134567


Q ss_pred             ecccccEEEEeecCCCCCCCCCCcccCCCCCc-CeEeEEEeee
Q 026697          187 KPKMGDALLFWSMKPDASLDPSSLHGGCPVIK-GNKWSSTKWI  228 (235)
Q Consensus       187 ~P~~G~alvF~n~~~~g~~d~~~~H~g~pV~~-G~K~i~~~W~  228 (235)
                      .-++|++|+|.         +.++|++.|..+ ..|+++..-+
T Consensus       207 ~~k~Gdvli~~---------~~l~Hgs~~N~S~~~R~~l~~~y  240 (296)
T d2a1xa1         207 VMEKGDTVFFH---------PLLIHGSGQNKTQGFRKAISCHF  240 (296)
T ss_dssp             CBCTTCEEEEC---------TTCCEEECCBCSSSCEEEEEEEE
T ss_pred             eecCCcEEEEC---------CCeeecCCCCCCcCceEEEEEEE
Confidence            77999999995         599999999775 4777776654
>d2fcta1 b.82.2.9 (A:3-310) Syringomycin biosynthesis enzyme 2, SyrB2 {Pseudomonas syringae pv. syringae [TaxId: 321]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure