Citrus Sinensis ID: 026708

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MMLVKKDKNGCRREMRQLGVIRTKNNNARRNKRLQIWRLSAKNKETVMSLSLSLTSSSSSSSSSENYDVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT
cccccccccccccccEEccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEcccccEEEEEccEEEEccccccc
ccEEEEccccccEccccccccccccccccccccccccccccccccccEEccccccccccccccccccccEEEcccccccccEEEEEEccccccccHHHHHEEccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEcccccEEEEccccEEEccccccc
mmlvkkdkngcRREMRQLGvirtknnnarRNKRLQIWRLSAKNKETVMSLSLSLtsssssssssenydVLEKKArtntvtclshgtmsvigrrKEMEDAVRVELgcmggggggdgdgdddddqkkydffgvydghggaRVAEACKERMHEVLVEVIAgeeygeknIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVAncgdsravlsrggvvvplsvdhkt
mmlvkkdkngcrremrqlgvirtknnnarrnkrlQIWRLSAKNKETVMSLSLsltsssssssssenYDVLekkartntvtclshgtmsvigrrkeMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEViageeygeknieWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVancgdsravlsrggvvvplsvdhkt
MMLVKKDKNGCRREMRQLGVIrtknnnarrnkrLQIWRLSAKNKETVMslslsltsssssssssENYDVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMggggggdgdgdddddQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTavvavvgkeelvvaNCGDSRAVLSRGGVVVPLSVDHKT
*********************************LQIWR***************************************TVTCLSHGTMSVI***********************************YDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPL******
*****************************************************************************TVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIA*****EKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT
MMLVKKDKNGCRREMRQLGVIRTKNNNARRNKRLQIWRLSAKNKET************************EKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT
******************************************************************YDVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLS*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MMLVKKDKNGCRREMRQLGVIRTKNNNARRNKRLQIWRLSAKNKETVMSLSLSLTSSSSSSSSSENYDVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
Q65XK7 381 Probable protein phosphat yes no 0.632 0.388 0.5 2e-35
Q5SN75 403 Probable protein phosphat no no 0.649 0.377 0.482 3e-35
P49597 434 Protein phosphatase 2C 56 yes no 0.632 0.341 0.474 1e-29
Q0JLP9 467 Probable protein phosphat no no 0.756 0.379 0.432 7e-29
Q65XG6 416 Probable protein phosphat no no 0.602 0.338 0.430 8e-28
Q9LNW3 442 Protein phosphatase 2C 3 no no 0.594 0.314 0.430 1e-27
P49598 399 Protein phosphatase 2C 37 no no 0.743 0.436 0.362 7e-27
Q9ZW21 362 Probable protein phosphat no no 0.829 0.535 0.341 1e-26
Q0J2L7 358 Probable protein phosphat no no 0.615 0.402 0.454 2e-26
Q5N9N2 414 Probable protein phosphat no no 0.585 0.330 0.428 6e-26
>sp|Q65XK7|P2C51_ORYSJ Probable protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica GN=Os05g0572700 PE=2 SV=1 Back     alignment and function desciption
 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/178 (50%), Positives = 111/178 (62%), Gaps = 30/178 (16%)

Query: 80  TCLSHGTMSVIGRRKEMEDAVRVE---LGCMGGGGG---GDGDGDDDDDQKKYDFFGVYD 133
            C+SHG++SVIGRR+EMEDAV +E   +   G G G   G G+G++D       FF VYD
Sbjct: 74  ACVSHGSVSVIGRRREMEDAVAIERTFMASTGDGAGAIRGGGEGEED-------FFAVYD 126

Query: 134 GHGGARVAEACKERMHEVLVEVIA-----GEEYGEKNIEWERVMEGCFGKMDEEV----- 183
           GHGG+RVAEAC++RMH VL E ++     G+     ++ W+  M   F +MD EV     
Sbjct: 127 GHGGSRVAEACRKRMHVVLAEEVSLRRLRGQSASGGDVRWKEAMLASFARMDGEVVGSVA 186

Query: 184 ---NRGRLREE----MVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234
               R    E      VGSTAVVAVVG+  +VVANCGDSRAVLSRGGV +PLS DHK 
Sbjct: 187 AAAPRVDGTEPSGFRTVGSTAVVAVVGRRRIVVANCGDSRAVLSRGGVALPLSTDHKP 244

Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q5SN75|P2C08_ORYSJ Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1 Back     alignment and function description
>sp|P49597|P2C56_ARATH Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2 Back     alignment and function description
>sp|Q0JLP9|P2C06_ORYSJ Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1 Back     alignment and function description
>sp|Q65XG6|P2C49_ORYSJ Probable protein phosphatase 2C 49 OS=Oryza sativa subsp. japonica GN=Os05g0457200 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNW3|P2C03_ARATH Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1 Back     alignment and function description
>sp|P49598|P2C37_ARATH Protein phosphatase 2C 37 OS=Arabidopsis thaliana GN=PP2CA PE=1 SV=1 Back     alignment and function description
>sp|Q9ZW21|P2C24_ARATH Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1 Back     alignment and function description
>sp|Q0J2L7|P2C68_ORYSJ Probable protein phosphatase 2C 68 OS=Oryza sativa subsp. japonica GN=Os09g0325700 PE=2 SV=2 Back     alignment and function description
>sp|Q5N9N2|P2C09_ORYSJ Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica GN=Os01g0846300 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
255545018 352 protein phosphatase 2c, putative [Ricinu 0.871 0.579 0.512 5e-44
224120666271 predicted protein [Populus trichocarpa] 0.581 0.501 0.653 1e-39
449465200 346 PREDICTED: probable protein phosphatase 0.688 0.465 0.482 5e-37
449516069 346 PREDICTED: probable protein phosphatase 0.688 0.465 0.477 3e-36
242091423 399 hypothetical protein SORBIDRAFT_09g02908 0.688 0.403 0.473 3e-35
293332683 375 uncharacterized protein LOC100381666 [Ze 0.628 0.392 0.518 9e-35
225426354 393 PREDICTED: probable protein phosphatase 0.585 0.348 0.512 1e-34
224132930242 predicted protein [Populus trichocarpa] 0.517 0.5 0.586 2e-34
413948543258 putative protein phosphatase 2C family p 0.623 0.565 0.521 4e-34
326533450 398 predicted protein [Hordeum vulgare subsp 0.662 0.389 0.497 8e-34
>gi|255545018|ref|XP_002513570.1| protein phosphatase 2c, putative [Ricinus communis] gi|223547478|gb|EEF48973.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/238 (51%), Positives = 148/238 (62%), Gaps = 34/238 (14%)

Query: 15  MRQLGVIRTKNNNARRNKRLQI-WRLSAKNKETVMSLSLSLTSSSSSSSSSENYDVL--- 70
           M QL VI+T N+  RR K  ++ +   AK    V     +   S+  S S +N  VL   
Sbjct: 1   MNQLTVIKTINSRRRRLKIRRLKYTCQAKKDAVVQEAKTTSDCSAEISLSCKNEVVLSGY 60

Query: 71  ----------EKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDD 120
                     E++        +S+G++SVIGRR+EMEDAV+VELG    GG         
Sbjct: 61  KRDELLERNDEEEGDLQRFAGMSYGSISVIGRRREMEDAVKVELGFTEKGG--------- 111

Query: 121 DDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIA----GEEYGEKNIEWERVMEGCF 176
              + YDFFGVYDGHGGARVAEACKER+H VL EVI     G+ +  + IEWE+VME CF
Sbjct: 112 ---ESYDFFGVYDGHGGARVAEACKERLHRVLEEVIVEEEDGKSHKGRTIEWEKVMEECF 168

Query: 177 GKMDEEVNRGRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT 234
            +MDEEV + R    MVGSTAVVAVVG++ELVVANCGDSRAVL RGGV VPLSVDHK 
Sbjct: 169 KRMDEEVEKDR----MVGSTAVVAVVGRDELVVANCGDSRAVLCRGGVAVPLSVDHKP 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224120666|ref|XP_002318387.1| predicted protein [Populus trichocarpa] gi|222859060|gb|EEE96607.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449465200|ref|XP_004150316.1| PREDICTED: probable protein phosphatase 2C 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449516069|ref|XP_004165070.1| PREDICTED: probable protein phosphatase 2C 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|242091423|ref|XP_002441544.1| hypothetical protein SORBIDRAFT_09g029080 [Sorghum bicolor] gi|241946829|gb|EES19974.1| hypothetical protein SORBIDRAFT_09g029080 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|293332683|ref|NP_001167952.1| uncharacterized protein LOC100381666 [Zea mays] gi|223945075|gb|ACN26621.1| unknown [Zea mays] gi|413948544|gb|AFW81193.1| putative protein phosphatase 2C family protein [Zea mays] Back     alignment and taxonomy information
>gi|225426354|ref|XP_002266149.1| PREDICTED: probable protein phosphatase 2C 8 [Vitis vinifera] gi|297742328|emb|CBI34477.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224132930|ref|XP_002321444.1| predicted protein [Populus trichocarpa] gi|222868440|gb|EEF05571.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|413948543|gb|AFW81192.1| putative protein phosphatase 2C family protein, partial [Zea mays] Back     alignment and taxonomy information
>gi|326533450|dbj|BAK05256.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
TAIR|locus:2005488 434 ABI1 "ABA INSENSITIVE 1" [Arab 0.628 0.338 0.406 8.5e-22
TAIR|locus:2080787 399 PP2CA "protein phosphatase 2CA 0.397 0.233 0.356 1.7e-20
TAIR|locus:2025087 442 HAI2 "highly ABA-induced PP2C 0.589 0.312 0.390 3.4e-20
TAIR|locus:2164610 423 ABI2 "AT5G57050" [Arabidopsis 0.641 0.354 0.373 2.9e-19
TAIR|locus:2043142 362 HAI3 "highly ABA-induced PP2C 0.589 0.381 0.371 6.8e-18
TAIR|locus:2168449 413 HAI1 "highly ABA-induced PP2C 0.581 0.329 0.380 2.6e-16
TAIR|locus:2007943 511 HAB2 "homology to ABI2" [Arabi 0.559 0.256 0.358 6.8e-14
TAIR|locus:2030230 511 HAB1 "AT1G72770" [Arabidopsis 0.559 0.256 0.317 2.7e-11
ASPGD|ASPL0000056464 420 AN1358 [Emericella nidulans (t 0.675 0.376 0.295 1.1e-10
ZFIN|ZDB-GENE-041114-185 382 ppm1bb "protein phosphatase, M 0.594 0.363 0.339 1.1e-10
TAIR|locus:2005488 ABI1 "ABA INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 258 (95.9 bits), Expect = 8.5e-22, P = 8.5e-22
 Identities = 63/155 (40%), Positives = 80/155 (51%)

Query:    84 HGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVAEA 143
             +G  S+ GRR EMEDAV   +                  Q    FFGVYDGHGG++VA  
Sbjct:   129 YGFTSICGRRPEMEDAVST-IPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANY 187

Query:   144 CKERMHEVLVEVIAGEEY----GEKNIE-WERVMEGCFGKMDEEVNRGRLREEMVGSTXX 198
             C+ERMH  L E IA E+     G+  +E W++ +   F ++D E+    +  E VGST  
Sbjct:   188 CRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEIES--VAPETVGSTSV 245

Query:   199 XXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHK 233
                         NCGDSRAVL RG   +PLSVDHK
Sbjct:   246 VAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHK 280
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISS;IDA
GO:0006470 "protein dephosphorylation" evidence=IEA;TAS
GO:0009409 "response to cold" evidence=RCA;IMP
GO:0009408 "response to heat" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IGI;IMP
GO:0010119 "regulation of stomatal movement" evidence=IMP
GO:0005634 "nucleus" evidence=IDA
GO:0009787 "regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0019901 "protein kinase binding" evidence=IPI
GO:0000165 "MAPK cascade" evidence=RCA
GO:0000303 "response to superoxide" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006914 "autophagy" evidence=RCA
GO:0007154 "cell communication" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0008219 "cell death" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA
GO:0010029 "regulation of seed germination" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0005509 "calcium ion binding" evidence=TAS
GO:0009737 "response to abscisic acid stimulus" evidence=IMP
GO:0008287 "protein serine/threonine phosphatase complex" evidence=TAS
TAIR|locus:2080787 PP2CA "protein phosphatase 2CA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025087 HAI2 "highly ABA-induced PP2C gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164610 ABI2 "AT5G57050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043142 HAI3 "highly ABA-induced PP2C gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168449 HAI1 "highly ABA-induced PP2C gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007943 HAB2 "homology to ABI2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030230 HAB1 "AT1G72770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000056464 AN1358 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-185 ppm1bb "protein phosphatase, Mg2+/Mn2+ dependent, 1Bb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XII.1331.1
hypothetical protein (271 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
smart00332 252 smart00332, PP2Cc, Serine/threonine phosphatases, 6e-35
cd00143 254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 5e-34
pfam00481 252 pfam00481, PP2C, Protein phosphatase 2C 6e-20
COG0631 262 COG0631, PTC1, Serine/threonine protein phosphatas 4e-19
PLN03145 365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 7e-13
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 1e-07
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information 
 Score =  124 bits (313), Expect = 6e-35
 Identities = 55/152 (36%), Positives = 75/152 (49%), Gaps = 20/152 (13%)

Query: 82  LSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVA 141
           L +G  S+ G RK MEDA                     D      FFGV+DGHGG+  A
Sbjct: 9   LRYGLSSMQGVRKPMEDAH----------------VITPDLSDSGGFFGVFDGHGGSEAA 52

Query: 142 EACKERMHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRGRLREEMVGSTAVVAV 201
           +   + + E+L E +   +  ++  + E  +   F   DEE+      E + GSTAVVA+
Sbjct: 53  KFLSKNLPEILAEEL--IKEKDELEDVEEALRKAFLSTDEEILEEL--EALSGSTAVVAL 108

Query: 202 VGKEELVVANCGDSRAVLSRGGVVVPLSVDHK 233
           +   +L VAN GDSRAVL R G  V L+ DHK
Sbjct: 109 ISGNKLYVANVGDSRAVLCRNGKAVQLTEDHK 140

The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity. Length = 252
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
PLN03145 365 Protein phosphatase 2c; Provisional 99.98
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 99.97
PTZ00224 381 protein phosphatase 2C; Provisional 99.95
COG0631 262 PTC1 Serine/threonine protein phosphatase [Signal 99.95
KOG0698 330 consensus Serine/threonine protein phosphatase [Si 99.95
PF00481 254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 99.95
KOG0699 542 consensus Serine/threonine protein phosphatase [Si 99.94
PRK14559 645 putative protein serine/threonine phosphatase; Pro 99.92
cd00143 254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.9
smart00332 255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.9
KOG0700 390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.89
KOG1323 493 consensus Serine/threonine phosphatase [Signal tra 99.8
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.66
KOG1379 330 consensus Serine/threonine protein phosphatase [Si 99.32
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.31
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 98.4
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 98.3
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 98.01
PRK10693303 response regulator of RpoS; Provisional 85.58
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information 
Probab=99.98  E-value=1.5e-31  Score=240.30  Aligned_cols=145  Identities=32%  Similarity=0.430  Sum_probs=118.2

Q ss_pred             CccceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHHHHHHHHHHHh
Q 026708           78 TVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKERMHEVLVEVIA  157 (234)
Q Consensus        78 ~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~l~~~l~~~~~  157 (234)
                      +.+.+.+|..|++|.|+.|||++++..++....      +.......+..||||||||||+.+|+|++++|++.|.+...
T Consensus        61 ~~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~------~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~  134 (365)
T PLN03145         61 FIPVVRSGAWADIGSRSSMEDVYICVDNFMSDF------GLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED  134 (365)
T ss_pred             ccCceEEEEEccccCCCCCCCceEecccccccc------cccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc
Confidence            444588999999999999999998876553210      01111123578999999999999999999999998876433


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHhcC--CCCCCCccceeEEEEeCCeEEEEEcCcccEEEEeCCeeeeCCCCCCC
Q 026708          158 GEEYGEKNIEWERVMEGCFGKMDEEVNRGR--LREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHKT  234 (234)
Q Consensus       158 ~~~~~~~~~~~~~~l~~af~~~d~~l~~~~--~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~g~~~~LT~DH~P  234 (234)
                      .      ...+.++|.++|..+|..|.+..  .....+|||+++++|.++.+|||||||||||++++|++++||+||+|
T Consensus       135 ~------~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~  207 (365)
T PLN03145        135 F------PREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKP  207 (365)
T ss_pred             c------chhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCC
Confidence            1      34678889999999999997651  23345999999999999999999999999999999999999999998

>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>PRK10693 response regulator of RpoS; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
3kdj_B 316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 2e-23
3nmn_B 319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 3e-23
3jrq_A 326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 3e-23
3nmv_B 324 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 2e-20
4ds8_B 343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 5e-19
3rt0_A 340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 5e-19
3ujg_B 350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 1e-18
3kb3_B 321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 1e-18
3nmt_B 341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 1e-18
3qn1_B 337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 1e-18
2p8e_A 307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 9e-10
2i0o_A 304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 6e-08
3fxj_A 390 Crystal Structure Of Human Protein Phosphatase 1a ( 4e-06
1a6q_A 382 Crystal Structure Of The Protein SerineTHREONINE PH 4e-06
4da1_A 389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 4e-06
2iq1_A 274 Crystal Structure Of Human Ppm1k Length = 274 5e-06
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/156 (40%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 84  HGTMSVIGRRKEMEDAVRVELGCMXXXXXXXXXXXXXXXQKKYDFFGVYDGHGGARVAEA 143
           +G  S+ GRR EMEDAV   +                  Q    FFGVYDGHGG++VA  
Sbjct: 11  YGFTSICGRRPEMEDAVST-IPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANY 69
Query: 144 CKERMHEVLVEVIAGEEY----GEKNIE-WERVMEGCFGKMDEEVNRGRLREEMVGSTXX 198
           C+ERMH  L E IA E+     G+  +E W++ +   F ++D E+    +  E VGST  
Sbjct: 70  CRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIE--SVAPETVGSTSV 127
Query: 199 XXXXXXXXXXXXNCGDSRAVLSRGGVVVPLSVDHKT 234
                       NCGDSRAVL RG   +PLSVDHK 
Sbjct: 128 VAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKP 163
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Abi2 Length = 324 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 3e-51
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 1e-45
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 2e-45
2i0o_A 304 Ser/Thr phosphatase; beta sandwich, structural gen 1e-44
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 1e-44
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 1e-43
2iq1_A 274 Protein phosphatase 2C kappa, PPM1K; structural ge 4e-41
4da1_A 389 Protein phosphatase 1K, mitochondrial; metal-ION-a 1e-40
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 4e-30
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 1e-28
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 1e-26
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 4e-25
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 3e-17
1txo_A 237 Putative bacterial enzyme; serine/threonine protei 9e-09
2pk0_A 250 Serine/threonine protein phosphatase STP1; SI moti 5e-08
2jfr_A 234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 2e-06
3rnr_A211 Stage II sporulation E family protein; structural 4e-06
2j82_A 240 TPPHA, protein serine-threonine phosphatase; PP2C 1e-05
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
 Score =  168 bits (426), Expect = 3e-51
 Identities = 71/158 (44%), Positives = 90/158 (56%), Gaps = 8/158 (5%)

Query: 81  CLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARV 140
              +G  S+ GRR EMEDAV      +    G   DG  D       FFGVYDGHGG++V
Sbjct: 8   VPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSA-AHFFGVYDGHGGSQV 66

Query: 141 AEACKERMHEVLVEVIAGEEYGEKNIE-----WERVMEGCFGKMDEEVNRGRLREEMVGS 195
           A  C+ERMH  L E IA E+    + +     W++ +   F ++D E+    +  E VGS
Sbjct: 67  ANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIES--VAPETVGS 124

Query: 196 TAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHK 233
           T+VVAVV    + VANCGDSRAVL RG   +PLSVDHK
Sbjct: 125 TSVVAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHK 162
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
2i0o_A 304 Ser/Thr phosphatase; beta sandwich, structural gen 99.97
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 99.97
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 99.97
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 99.97
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 99.97
2iq1_A 274 Protein phosphatase 2C kappa, PPM1K; structural ge 99.96
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 99.96
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 99.96
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 99.95
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 99.95
4da1_A 389 Protein phosphatase 1K, mitochondrial; metal-ION-a 99.95
2pk0_A 250 Serine/threonine protein phosphatase STP1; SI moti 99.95
1txo_A 237 Putative bacterial enzyme; serine/threonine protei 99.95
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 99.95
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 99.94
2j82_A 240 TPPHA, protein serine-threonine phosphatase; PP2C 99.94
2jfr_A 234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.91
3rnr_A211 Stage II sporulation E family protein; structural 99.86
3t91_A 242 Stage II sporulation protein E; SPOIIE, phosphatas 99.29
3pu9_A 242 Protein serine/threonine phosphatase; PSI-biology, 99.24
3f79_A255 Probable two-component response regulator; adaptor 98.82
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 98.62
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 97.41
3eq2_A394 Probable two-component response regulator; adaptor 93.8
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
Probab=99.97  E-value=3.6e-31  Score=231.61  Aligned_cols=146  Identities=35%  Similarity=0.495  Sum_probs=121.8

Q ss_pred             ccchhhcccCCccceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHH
Q 026708           68 DVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKER  147 (234)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~  147 (234)
                      |...+.+.......+.||.++++|+|..|||++++...+.                .+..||+|||||||+.+|++++++
T Consensus         9 p~~~~~~~~~~~~~~~~~~~s~~G~R~~nED~~~~~~~~~----------------~~~~l~~V~DGhGG~~~a~~as~~   72 (304)
T 2i0o_A            9 PLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFD----------------DQCSFFAVYDGHGGAEVAQYCSLH   72 (304)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEEEESSSCCCEEEEEEEEEE----------------TTEEEEEEEECSSCSHHHHHHHHH
T ss_pred             CcccccccccCCCceEEEEeecCCCCCCccCEEEEEeccC----------------CCeEEEEEEcCCCCHHHHHHHHHH
Confidence            3444455555556899999999999999999998875432                367899999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhc-----------------CCCCCCCccceeEEEEeCCeEEEE
Q 026708          148 MHEVLVEVIAGEEYGEKNIEWERVMEGCFGKMDEEVNRG-----------------RLREEMVGSTAVVAVVGKEELVVA  210 (234)
Q Consensus       148 l~~~l~~~~~~~~~~~~~~~~~~~l~~af~~~d~~l~~~-----------------~~~~~~~GtTa~v~li~~~~l~vA  210 (234)
                      ++..|.+....     ....+.++|+++|..+|+.|...                 ......+|||+++++|.++++|||
T Consensus        73 ~~~~l~~~~~~-----~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~va  147 (304)
T 2i0o_A           73 LPTFLKTVEAY-----GRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVA  147 (304)
T ss_dssp             HHHHHHHSHHH-----HTTCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCC-----CCTTTSCEEEEEEEEEETTEEEEE
T ss_pred             HHHHHHhhhhc-----ccccHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccccccccCCCCCCccEEEEEEECCEEEEE
Confidence            99988875431     13457889999999999988642                 112567999999999999999999


Q ss_pred             EcCcccEEEEeCCeeeeCCCCCCC
Q 026708          211 NCGDSRAVLSRGGVVVPLSVDHKT  234 (234)
Q Consensus       211 NvGDSRa~l~r~g~~~~LT~DH~P  234 (234)
                      ||||||||++++|++++||.||+|
T Consensus       148 nvGDSRa~l~r~g~~~~LT~DH~~  171 (304)
T 2i0o_A          148 NAGDSRCVVCRNGKALEMSFDHKP  171 (304)
T ss_dssp             EESSCEEEEEETTEEEECCCCCCT
T ss_pred             EccCcEEEEEECCEEEEcCCCcCC
Confidence            999999999999999999999997
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 234
d1a6qa2 295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 2e-18
d1txoa_ 235 d.219.1.1 (A:) putative serine/threonine phosphata 5e-13
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 2e-18
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 18/170 (10%)

Query: 69  VLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDF 128
            +EK         L +G  S+ G R EMEDA    +                   + + F
Sbjct: 8   KMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVI-------------GLPSGLESWSF 54

Query: 129 FGVYDGHGGARVAEACKERMHEVLVE--VIAGEEYGEKNIEWERVMEGCFGKMDEEVNR- 185
           F VYDGH G++VA+ C E + + +       G          +  +   F ++DE +   
Sbjct: 55  FAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVM 114

Query: 186 --GRLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRGGVVVPLSVDHK 233
              +   +  GSTAV  ++  +     NCGDSR +L R   V   + DHK
Sbjct: 115 SEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHK 164
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1a6qa2 295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_ 235 putative serine/threonine phosphatase pstp/ppp {My 99.96
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=250.15  Aligned_cols=154  Identities=30%  Similarity=0.410  Sum_probs=130.9

Q ss_pred             ccchhhcccCCccceeEEEEecccCCCCCCcceEEecCCCCCCCCCCCCCCCCCCCCCeeEEEEecCCCChHHHHHHHHH
Q 026708           68 DVLEKKARTNTVTCLSHGTMSVIGRRKEMEDAVRVELGCMGGGGGGDGDGDDDDDQKKYDFFGVYDGHGGARVAEACKER  147 (234)
Q Consensus        68 ~~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lf~VfDGHGG~~~a~~as~~  147 (234)
                      |..++....+....+.||+++++|+|++|||++++..++...             ..++.||||||||||+.+|+|++++
T Consensus         7 p~~~k~~~~~~~~~~~~g~~s~~G~R~~~ED~~~~~~~~~~~-------------~~~~~lf~V~DGhGG~~~s~~~~~~   73 (295)
T d1a6qa2           7 PKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSG-------------LESWSFFAVYDGHAGSQVAKYCCEH   73 (295)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEETSSSCCEEEEEEEEETTT-------------EEEEEEEEEEEEESCSHHHHHHHHH
T ss_pred             CCcccCcccccCCceEEEEEeCccCCCcccCeeEEEcccCCC-------------CCceEEEEEEeCCCChHHHHHHHHH
Confidence            556667777777789999999999999999999988765331             1467899999999999999999999


Q ss_pred             HHHHHHHHHhcc--cCCCchhHHHHHHHHHHHHHHHHHHhc---CCCCCCCccceeEEEEeCCeEEEEEcCcccEEEEeC
Q 026708          148 MHEVLVEVIAGE--EYGEKNIEWERVMEGCFGKMDEEVNRG---RLREEMVGSTAVVAVVGKEELVVANCGDSRAVLSRG  222 (234)
Q Consensus       148 l~~~l~~~~~~~--~~~~~~~~~~~~l~~af~~~d~~l~~~---~~~~~~~GtTa~v~li~~~~l~vANvGDSRa~l~r~  222 (234)
                      |+..|.+.+...  ........+.++|+++|.++++.+...   ......+||||++++|.++++|||||||||||++++
T Consensus        74 l~~~l~~~~~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~  153 (295)
T d1a6qa2          74 LLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRN  153 (295)
T ss_dssp             HHHHHHTSHHHHCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEET
T ss_pred             HHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeec
Confidence            999988755422  123345678999999999999988654   455678999999999999999999999999999999


Q ss_pred             CeeeeCCCCCCC
Q 026708          223 GVVVPLSVDHKT  234 (234)
Q Consensus       223 g~~~~LT~DH~P  234 (234)
                      |.+++||.||+|
T Consensus       154 ~~~~~lT~dH~~  165 (295)
T d1a6qa2         154 RKVHFFTQDHKP  165 (295)
T ss_dssp             TEEEEECCCCCT
T ss_pred             ccceeeccccCc
Confidence            999999999997
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure