Citrus Sinensis ID: 026732

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----

MTAMHCHFTGRNFISKSLSTFLPLLSIVQTQAMAVTIHNALPSLNALKSKSIIRNRPESRRVSANSVRCCQVATSDKQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL

cccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccEEEcccccccccHHHccccccccccccccHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHcHHcccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHHHHHHHHccEEEEEEcccc

cccEEcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccEEEcccccccccccccccEEEEEccccccEEEEEEEccEEEccccccccHHHHHHHHHHHHHccccEEccHHccccHHHHHHHHHHHHHccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEEEcc

mtamhchftgrnfISKSLSTFLPLLSIVQTQAMAVTIHNALpslnalksksiirnrpesrrvsansvrccqvatsdkqsitvsngndSLEICRVLNGmwqtsggwgridrDDAVDAMLRYADAglttfdmadhygpaedlYGIFINRvrrerppefldkvrgltkwvpppvkmtssIVRESIdvsrrrmdvpcldmlqfhwwdysnpgyldALNHLTDLKEEAIGVQVKLRLLL

MTAMHCHFTGRNFISKSLSTFLPLLSIVQTQAMAVTIHNALpslnalksksiirnrpesrrvsansvrccqvatsdkqsitvsngndSLEICRVLNGmwqtsggwgrIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPpefldkvrgltkwvpppvkmtssivresidvsrrrMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL

****HCHFTGRNFISKSLSTFLPLLSIVQTQAMAVTIHNALPSLNAL*******************VRCCQVAT****SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRL**

*****CHFTGRNFISKSLSTFLPLLSIVQTQAMAVTIHNALPSLN*************************************SNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL

MTAMHCHFTGRNFISKSLSTFLPLLSIVQTQAMAVTIHNALPSLNALKSKSIIRN***************QVATSDKQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL

*TAMHCHFTGRNFISKSLSTFLPLLSIVQTQAMAVTIHNALPSLNALKSKSIIRNRPESRRVSANSVRCCQVATSDKQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLRLLL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		234	2.2.26 [Sep-21-2011]
Q94A68		377	Uncharacterized oxidoredu	no	no	0.760	0.472	0.272	5e-06

>sp\|Q94A68\|Y1669_ARATH Uncharacterized oxidoreductase At1g06690, chloroplastic OS=Arabidopsis thaliana GN=At1g06690 PE=1 SV=1	Back alignment and function desciption

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 20/198 (10%)

Query: 33  MAVTIHNALPSLNALKSKSIIRNRPESRRVSANSVRCCQVATSDKQSITVSNGNDSLEIC 92
           MA+  H   P  N + S+     R   R++         VA +  +   V  G   L++ 
Sbjct: 1   MAMATHFTFP-FNYVVSEGSHGRRSFVRKLVRAVASGDSVAPAISEESKVKLGGSDLKVT 59

Query: 93  RVLNGMWQ--TSGGWGRIDRDD-----AVDAMLRYADAGLTTFDMADHYGP--------A 137
           ++  G+W    +  W     DD     A  A     D G+  FD A+ YG         +
Sbjct: 60  KLGIGVWSWGDNSYWNDFQWDDRKLKAAKGAFDTSLDNGIDFFDTAEVYGSKFSLGAISS 119

Query: 138 EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDML 197
           E L G FI R R+ER P    +V   TK+   P +     V  ++  S  R+++  +D+ 
Sbjct: 120 ETLLGRFI-RERKERYPG--AEVSVATKFAALPWRFGRESVVTALKDSLSRLELSSVDLY 176

Query: 198 QFHWWD-YSNPGYLDALN 214
           Q HW   + N GYLD L 
Sbjct: 177 QLHWPGLWGNEGYLDGLG 194

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		234
225436289		384	PREDICTED: putative aryl-alcohol dehydro	0.807	0.492	0.755	1e-81
224105045		381	predicted protein [Populus trichocarpa]	0.794	0.488	0.725	3e-80
255576337		379	aldo-keto reductase, putative [Ricinus c	0.790	0.488	0.722	7e-80
356550119		387	PREDICTED: putative aryl-alcohol dehydro	0.700	0.423	0.837	6e-79
449456124		387	PREDICTED: putative aryl-alcohol dehydro	0.811	0.490	0.731	3e-77
297822521		386	aldo/keto reductase family protein [Arab	0.816	0.494	0.703	4e-77
18401495		384	NAD(P)-linked oxidoreductase-like protei	0.811	0.494	0.701	5e-77
356543572		388	PREDICTED: putative aryl-alcohol dehydro	0.662	0.399	0.853	3e-76
147866709		344	hypothetical protein VITISV_030551 [Viti	0.623	0.424	0.876	5e-75
297826189		386	predicted protein [Arabidopsis lyrata su	0.816	0.494	0.671	3e-74

>gi\|225436289\|ref\|XP_002265600.1\| PREDICTED: putative aryl-alcohol dehydrogenase C977.14c isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  308 bits (788), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 145/192 (75%), Positives = 163/192 (84%), Gaps = 3/192 (1%)

Query: 33  MAVTIHNALPSLNALKS-KSIIRNRPESRRVSANSVRCCQVATSDKQSITVSNGNDSLEI 91
           MAVT+H     L++    ++ +  RP SR+  ANSVRC    + + Q +TV NGNDSL+I
Sbjct: 1   MAVTVHPVCSHLSSFHPVRTRLTTRPVSRKFGANSVRCD--GSIETQRVTVKNGNDSLDI 58

Query: 92  CRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE 151
           CRVLNGMWQTSGGWGRIDR+DAV+AMLRYADAGL+TFDMADHYGPAEDLYGIFINRVRRE
Sbjct: 59  CRVLNGMWQTSGGWGRIDRNDAVEAMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRRE 118

Query: 152 RPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD 211
           RPPEF+DKVRGLTKWVPPPVKMTS+ VRESI+VSR+RMDV  LDMLQFHWWDYSN GYLD
Sbjct: 119 RPPEFVDKVRGLTKWVPPPVKMTSNFVRESINVSRKRMDVAALDMLQFHWWDYSNTGYLD 178

Query: 212 ALNHLTDLKEEA 223
           AL HLTDLKEE 
Sbjct: 179 ALKHLTDLKEEG 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224105045\|ref\|XP_002313665.1\| predicted protein [Populus trichocarpa] gi\|222850073\|gb\|EEE87620.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255576337\|ref\|XP_002529061.1\| aldo-keto reductase, putative [Ricinus communis] gi\|223531473\|gb\|EEF33305.1\| aldo-keto reductase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356550119\|ref\|XP_003543437.1\| PREDICTED: putative aryl-alcohol dehydrogenase C977.14c-like [Glycine max]	Back alignment and taxonomy information

>gi\|449456124\|ref\|XP_004145800.1\| PREDICTED: putative aryl-alcohol dehydrogenase C750.01-like [Cucumis sativus] gi\|449518433\|ref\|XP_004166246.1\| PREDICTED: putative aryl-alcohol dehydrogenase C750.01-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297822521\|ref\|XP_002879143.1\| aldo/keto reductase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297324982\|gb\|EFH55402.1\| aldo/keto reductase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18401495|ref|NP_565656.1| NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana] gi|14326473|gb|AAK60282.1|AF385689_1 At2g27680/F15K20.22 [Arabidopsis thaliana] gi|3860264|gb|AAC73032.1| expressed protein [Arabidopsis thaliana] gi|18700198|gb|AAL77709.1| At2g27680/F15K20.22 [Arabidopsis thaliana] gi|330252931|gb|AEC08025.1| NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|356543572\|ref\|XP_003540234.1\| PREDICTED: putative aryl-alcohol dehydrogenase C977.14c-like [Glycine max]	Back alignment and taxonomy information

>gi\|147866709\|emb\|CAN82646.1\| hypothetical protein VITISV_030551 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297826189\|ref\|XP_002880977.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297326816\|gb\|EFH57236.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		234
TAIR\|locus:2042124		384	AT2G27680 "AT2G27680" [Arabido	0.807	0.492	0.705	2e-72
DICTYBASE\|DDB_G0292638		332	DDB_G0292638 "Uncharacterized	0.576	0.406	0.420	4e-26
TAIR\|locus:2009120		377	AT1G06690 "AT1G06690" [Arabido	0.811	0.503	0.270	1.3e-05
ASPGD\|ASPL0000078320		463	AN8658 [Emericella nidulans (t	0.380	0.192	0.288	0.00034
TIGR_CMR\|SPO_A0345		327	SPO_A0345 "oxidoreductase, ald	0.512	0.366	0.299	0.00073

TAIR\|locus:2042124 AT2G27680 "AT2G27680" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 134/190 (70%), Positives = 157/190 (82%)

Query:    33 MAVTIHNALPSLNALKSKSIIRNRPESRRVSANSVRCCQVATSDKQSITVSNGNDSLEIC 92
             M V++H+ + +  A    S  RN    R +S  SV C    T   +S+ + NGNDSLEIC
Sbjct:     1 MPVSVHSVIATNLATTLSSNYRNVSRRRTIST-SVNCSVEITEADRSVKLKNGNDSLEIC 59

Query:    93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRER 152
             RVLNGMWQTSGGWG+IDR+DAVD+MLRYADAGL+TFDMADHYGPAEDLYGIFINRVRRER
Sbjct:    60 RVLNGMWQTSGGWGKIDRNDAVDSMLRYADAGLSTFDMADHYGPAEDLYGIFINRVRRER 119

Query:   153 PPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDA 212
             PPE+L+K++GLTKWVPPP+KMTSS VR++ID+SR+RMDV  LDMLQFHWWDY+N GYLDA
Sbjct:   120 PPEYLEKIKGLTKWVPPPIKMTSSYVRQNIDISRKRMDVAALDMLQFHWWDYANDGYLDA 179

Query:   213 LNHLTDLKEE 222
             L HLTDLKEE
Sbjct:   180 LKHLTDLKEE 189

GO:0004033 "aldo-keto reductase (NADP) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0292638 DDB_G0292638 "Uncharacterized oxidoreductase ydjG" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2009120 AT1G06690 "AT1G06690" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000078320 AN8658 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_A0345 SPO_A0345 "oxidoreductase, aldo/keto reductase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00022043001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (384 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		234
cd06660		285	cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs)	7e-25
pfam00248		277	pfam00248, Aldo_ket_red, Aldo/keto reductase famil	4e-24
COG0667		316	COG0667, Tas, Predicted oxidoreductases (related t	4e-14
COG0656		280	COG0656, ARA1, Aldo/keto reductases, related to di	1e-04
PRK09912		346	PRK09912, PRK09912, L-glyceraldehyde 3-phosphate r	3e-04

>gnl\|CDD\|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols	Back alignment and domain information

 Score = 98.8 bits (247), Expect = 7e-25
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 17/151 (11%)

Query: 85  GNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYG 142
           G   L++ R+  G WQ  GG+  +D ++A  A+    DAG+   D AD YG   +E+L G
Sbjct: 5   GKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLG 62

Query: 143 IFINRVRRERPPEFLDKVRGLTKWVPPPVK---MTSSIVRESIDVSRRRMDVPCLDMLQF 199
             +    +ER P   ++V   TK  P P     ++   +R +++ S +R+    +D+   
Sbjct: 63  EAL----KERGPR--EEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLL 116

Query: 200 HWWDYSNPGYLDALNHLTDLKEE----AIGV 226
           HW D   P   + L  L +L +E    AIGV
Sbjct: 117 HWPDPDTPDIEETLRALEELVKEGKIRAIGV 147

AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others. Length = 285

>gnl\|CDD\|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family	Back alignment and domain information

>gnl\|CDD\|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|182140 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate reductase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		234
COG0667		316	Tas Predicted oxidoreductases (related to aryl-alc	100.0
KOG1575		336	consensus Voltage-gated shaker-like K+ channel, su	100.0
PLN02587		314	L-galactose dehydrogenase	100.0
COG0656		280	ARA1 Aldo/keto reductases, related to diketogulona	100.0
TIGR01293		317	Kv_beta voltage-dependent potassium channel beta s	100.0
PRK09912		346	L-glyceraldehyde 3-phosphate reductase; Provisiona	100.0
PRK10625		346	tas putative aldo-keto reductase; Provisional	100.0
cd06660		285	Aldo_ket_red Aldo-keto reductases (AKRs) are a sup	100.0
KOG1577		300	consensus Aldo/keto reductase family proteins [Gen	100.0
PRK14863		292	bifunctional regulator KidO; Provisional	99.98
PRK11172		267	dkgB 2,5-diketo-D-gluconate reductase B; Provision	99.97
PRK11565		275	dkgA 2,5-diketo-D-gluconate reductase A; Provision	99.97
PRK10376		290	putative oxidoreductase; Provisional	99.97
PF00248		283	Aldo_ket_red: Aldo/keto reductase family; InterPro	99.97
COG4989		298	Predicted oxidoreductase [General function predict	99.96
KOG1576		342	consensus Predicted oxidoreductase [Energy product	99.96
COG1453		391	Predicted oxidoreductases of the aldo/keto reducta	99.94
COG0635		416	HemN Coproporphyrinogen III oxidase and related Fe	83.49
PRK00208		250	thiG thiazole synthase; Reviewed	80.88

>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=3e-38  Score=284.15  Aligned_cols=152  Identities=19%  Similarity=0.251  Sum_probs=134.3

Q ss_pred             ceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCcc--ccHHHHHHHHHhhh-hcCCCc
Q 026732           79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVR-RERPPE  155 (234)
Q Consensus        79 ~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG--~sE~~lG~al~~~~-r~~~~~  155 (234)
                      |.+|+||++|++||+||||||.+|+.+...+.+++.++|++|+|+||||||||++||  .+|+++|++|++.+ |+   +
T Consensus         1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd---~   77 (316)
T COG0667           1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRD---K   77 (316)
T ss_pred             CCceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCC---e
Confidence            468999999999999999999998765555666888899999999999999999998  59999999999876 34   7


Q ss_pred             eeeeEEeecccCC-C---CCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEec
Q 026732          156 FLDKVRGLTKWVP-P---PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKLR  231 (234)
Q Consensus       156 v~~~~~~~tk~~~-~---~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGvS  231 (234)
                      +++++|+...+++ .   ..++++++|+++++.||+|||+|||||||+||||+.++ .+|++++|.+|+++|+|++||+|
T Consensus        78 vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S  156 (316)
T COG0667          78 VVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGVS  156 (316)
T ss_pred             EEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEec
Confidence            7777776655432 1   15789999999999999999999999999999999888 89999999999999999999999


Q ss_pred             cCC
Q 026732          232 LLL  234 (234)
Q Consensus       232 N~~  234 (234)
                      ||.
T Consensus       157 ~~~  159 (316)
T COG0667         157 NYS  159 (316)
T ss_pred             CCC
Confidence            983

>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]	Back alignment and domain information

>PLN02587 L-galactose dehydrogenase	Back alignment and domain information

>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	Back alignment and domain information

>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal	Back alignment and domain information

>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional	Back alignment and domain information

>PRK10625 tas putative aldo-keto reductase; Provisional	Back alignment and domain information

>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols	Back alignment and domain information

>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]	Back alignment and domain information

>PRK14863 bifunctional regulator KidO; Provisional	Back alignment and domain information

>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional	Back alignment and domain information

>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional	Back alignment and domain information

>PRK10376 putative oxidoreductase; Provisional	Back alignment and domain information

>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []	Back alignment and domain information

>COG4989 Predicted oxidoreductase [General function prediction only]	Back alignment and domain information

>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]	Back alignment and domain information

>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]	Back alignment and domain information

>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	Back alignment and domain information

>PRK00208 thiG thiazole synthase; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		234
4aub_A		366	The Complex Structure Of The Bacterial Aldo-Keto Re		1e-04
3n6q_A		346	Crystal Structure Of Yghz From E. Coli Length = 346		1e-04
3erp_A		353	Structure Of Idp01002, A Putative Oxidoreductase Fr		3e-04

>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase Akr14a1 With Nadp And Citrate Length = 366

Back alignment and structure

Iteration: 1

Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 85 GNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYA-DAGLTTFDMADHYGP----AED 139 G L + + G+W +G ++ ++ A+LR A D G+T FD+A++YGP AE+ Sbjct: 39 GKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEE 95 Query: 140 LYGIFINRVRRERPPEFLDKV-----RGLTKWVPPPVKMTSS--IVRESIDVSRRRMDVP 192 +G R+ RE + D++ G W P P S + S+D S +RM + Sbjct: 96 NFG----RLLREDFAAYRDELIISTKAGYDMW-PGPYGSGGSRKYLLASLDQSLKRMGLE 150 Query: 193 CLDMLQFHWWDYSNP 207 +D+ H D + P Sbjct: 151 YVDIFYSHRVDENTP 165

PyMOL of 4aub

>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli Length = 346

Back alignment and structure

>pdb|3ERP|A Chain A, Structure Of Idp01002, A Putative Oxidoreductase From And Essential Gene Of Salmonella Typhimurium Length = 353

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		234
1pyf_A		312	IOLS protein; beta-alpha barrel, aldo-keto reducta	1e-13
1pz1_A		333	GSP69, general stress protein 69; beta-alpha barre	1e-13
3n2t_A		348	Putative oxidoreductase; aldo/keto reductase super	9e-12
1gve_A		327	Aflatoxin B1 aldehyde reductase member 3; oxidored	3e-11
2bp1_A		360	Aflatoxin B1 aldehyde reductase member 2; oxidored	2e-10
1ur3_M		319	Hypothetical oxidoreductase YDHF; NADP binding, al	2e-09
3erp_A		353	Putative oxidoreductase; funded by the national in	2e-09
3n6q_A		346	YGHZ aldo-keto reductase; TIM barrel, oxidoreducta	5e-09
3v0s_A		337	Perakine reductase; AKR superfamily, oxidoreductas	6e-09
3eau_A		327	Voltage-gated potassium channel subunit beta-2; kv	1e-08
3lut_A		367	Voltage-gated potassium channel subunit beta-2; vo	2e-07
1ynp_A		317	Oxidoreductase, AKR11C1; aldo-keto reductase, NADP	6e-06
1lqa_A		346	TAS protein; TIM barrel, structure 2 function proj	1e-04

>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A* Length = 312	Back alignment and structure

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 22/156 (14%)

Query: 85  GNDSLEICRVLNGMWQTSGG--WGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDL 140
           G   L++  +  G     G   +  ++ +   + +      G+T  D A  YG   +E+L
Sbjct: 7   GKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEEL 66

Query: 141 YGIFINRVRRERPPEFLDKVRGLTK----WVPPPVKMTSS--IVRESIDVSRRRMDVPCL 194
            G  +    R       + V   TK             +S   +++S+D S +R++   +
Sbjct: 67  IGEVLREFNR-------EDVVIATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYI 119

Query: 195 DMLQFHWWDYSNPGYLDALNHLTDLKEE----AIGV 226
           D+   H+ D   P   +A+N L ++K+     +IGV
Sbjct: 120 DLFYIHFPDEHTP-KDEAVNALNEMKKAGKIRSIGV 154

PyMOL of 1pyf

>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1 Length = 333	Back alignment and structure

>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} Length = 348	Back alignment and structure

>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A* Length = 327	Back alignment and structure

>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A* Length = 319	Back alignment and structure

>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp} Length = 353	Back alignment and structure

>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} Length = 346	Back alignment and structure

>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A* Length = 337	Back alignment and structure

>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A* Length = 327	Back alignment and structure

>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus} Length = 367	Back alignment and structure

>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A* Length = 317	Back alignment and structure

>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1 Length = 346	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		234
1pyf_A		312	IOLS protein; beta-alpha barrel, aldo-keto reducta	100.0
4exb_A		292	Putative uncharacterized protein; aldo-keto reduct	100.0
1pz1_A		333	GSP69, general stress protein 69; beta-alpha barre	100.0
3n2t_A		348	Putative oxidoreductase; aldo/keto reductase super	100.0
3v0s_A		337	Perakine reductase; AKR superfamily, oxidoreductas	100.0
1ur3_M		319	Hypothetical oxidoreductase YDHF; NADP binding, al	100.0
3eau_A		327	Voltage-gated potassium channel subunit beta-2; kv	100.0
3n6q_A		346	YGHZ aldo-keto reductase; TIM barrel, oxidoreducta	100.0
3erp_A		353	Putative oxidoreductase; funded by the national in	100.0
1ynp_A		317	Oxidoreductase, AKR11C1; aldo-keto reductase, NADP	100.0
1lqa_A		346	TAS protein; TIM barrel, structure 2 function proj	100.0
3lut_A		367	Voltage-gated potassium channel subunit beta-2; vo	100.0
4gie_A		290	Prostaglandin F synthase; structural genomics, nia	100.0
3ln3_A		324	Dihydrodiol dehydrogenase; putative reductase, str	100.0
3o0k_A		283	Aldo/keto reductase; ssgcid, ALS collaborative cry	100.0
1vbj_A		281	Prostaglandin F synthase; TIM barrel, oxidoreducta	100.0
3f7j_A		276	YVGN protein; aldo-keto reductase, oxidoreductase;	100.0
1hw6_A		278	2,5-diketo-D-gluconic acid reductase; aldo-keto re	100.0
3up8_A		298	Putative 2,5-diketo-D-gluconic acid reductase B; n	100.0
2wzm_A		283	Aldo-keto reductase; oxidoreductase; HET: NA7; 1.6	100.0
4gac_A		324	Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldhe	100.0
3b3e_A		310	YVGN protein; aldo-keto reductase, oxidoreductase;	100.0
3buv_A		326	3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reduc	100.0
3o3r_A		316	Aldo-keto reductase family 1, member B7; aldose re	100.0
3b3d_A		314	YTBE protein, putative morphine dehydrogenase; ald	100.0
1qwk_A		317	Aldose reductase, aldo-keto reductase family 1 mem	100.0
1mi3_A		322	Xylose reductase, XR; aldo-keto reductase, beta-al	100.0
3h7u_A		335	Aldo-keto reductase; stress response, NADP, drough	100.0
1vp5_A		298	2,5-diketo-D-gluconic acid reductase; TM1009, stru	100.0
1afs_A		323	3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase;	100.0
1zgd_A		312	Chalcone reductase; polyketide, deoxychalcone, iso	100.0
4f40_A		288	Prostaglandin F2-alpha synthase/D-arabinose dehyd;	100.0
1us0_A		316	Aldose reductase; oxidoreductase, NADP, IDD594; HE	100.0
1s1p_A		331	Aldo-keto reductase family 1 member C3; TIM-barrel	100.0
1mzr_A		296	2,5-diketo-D-gluconate reductase A; alpha/beta-bar	100.0
2bp1_A		360	Aflatoxin B1 aldehyde reductase member 2; oxidored	100.0
3h7r_A		331	Aldo-keto reductase; stress response, NADP, drough	100.0
3krb_A		334	Aldose reductase; ssgcid, SBRI, emerald biostructu	100.0
2bgs_A		344	Aldose reductase; holoenzyme, aldo/keto reductase,	100.0
1gve_A		327	Aflatoxin B1 aldehyde reductase member 3; oxidored	100.0
3cf4_A		807	Acetyl-COA decarboxylase/synthase alpha subunit; m	85.82

>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*	Back alignment and structure

Probab=100.00  E-value=4.8e-38  Score=279.98  Aligned_cols=150  Identities=18%  Similarity=0.297  Sum_probs=131.1

Q ss_pred             ceEEEcCCCCcccccceeccccCCCC--CCCCCHHHHHHHHHHHHHhCCCeeecCCCccc--cHHHHHHHHHhhhhcCCC
Q 026732           79 SITVSNGNDSLEICRVLNGMWQTSGG--WGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPP  154 (234)
Q Consensus        79 ~~~r~LG~tg~~Vs~lglGt~~~g~~--~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--sE~~lG~al~~~~r~~~~  154 (234)
                      |++++||++|++||+||||||++++.  |+..+++++.++|++|+++||||||||+.||.  +|+++|++|++.+|+   
T Consensus         1 M~~~~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~G~sE~~lG~al~~~~R~---   77 (312)
T 1pyf_A            1 MKKAKLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSEELIGEVLREFNRE---   77 (312)
T ss_dssp             -CCEECTTSCCEECSBCEECTTSSCTTTCSSCCHHHHHHHHHHHHHTTCCEEECCTTTTTTHHHHHHHHHHTTSCGG---
T ss_pred             CCeeecCCCCCcccCEeEeccccCCCCCCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHhhhcCCC---
Confidence            46899999999999999999999864  66678899999999999999999999999984  999999999875455   


Q ss_pred             ceeeeEEeecccCC-CC---CCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeEEe
Q 026732          155 EFLDKVRGLTKWVP-PP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQVKL  230 (234)
Q Consensus       155 ~v~~~~~~~tk~~~-~~---~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~IGv  230 (234)
                      ++++.+|+.  .++ ..   .+.+++.+++++++||+|||+||||+|++|||++..+ ++++|++|++|+++||||+|||
T Consensus        78 ~~~i~TK~g--~~~~~~~~~~~~~~~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~-~~e~~~al~~l~~~Gkir~iGv  154 (312)
T 1pyf_A           78 DVVIATKAA--HRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLFYIHFPDEHTP-KDEAVNALNEMKKAGKIRSIGV  154 (312)
T ss_dssp             GCEEEEEEC--EEEETTEEEECCCHHHHHHHHHHHHHHHTSSCBSEEEECSCCSSSC-HHHHHHHHHHHHHTTSBSCEEE
T ss_pred             eEEEEEEeC--CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHCCCcCEEEe
Confidence            666666643  111 10   3679999999999999999999999999999998877 9999999999999999999999


Q ss_pred             ccCC
Q 026732          231 RLLL  234 (234)
Q Consensus       231 SN~~  234 (234)
                      |||.
T Consensus       155 Sn~~  158 (312)
T 1pyf_A          155 SNFS  158 (312)
T ss_dssp             ESCC
T ss_pred             cCCC
Confidence            9984

PyMOL of 1pyf

>4exb_A Putative uncharacterized protein; aldo-keto reductase, NADP+ binding, oxidoreducta; 2.75A {Pseudomonas aeruginosa} PDB: 4exa_A	Back alignment and structure

>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1	Back alignment and structure

>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0	Back alignment and structure

>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*	Back alignment and structure

>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*	Back alignment and structure

>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*	Back alignment and structure

>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*	Back alignment and structure

>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}	Back alignment and structure

>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC; 1.25A {Bacillus halodurans} PDB: 1ynq_A*	Back alignment and structure

>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1	Back alignment and structure

>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating, potassium channel, KV1.2, gating charges, no analysis, ION transport; HET: NAP; 2.90A {Rattus norvegicus}	Back alignment and structure

>4gie_A Prostaglandin F synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: NAP; 1.25A {Trypanosoma cruzi} PDB: 4fzi_A*	Back alignment and structure

>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1	Back alignment and structure

>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}	Back alignment and structure

>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}	Back alignment and structure

>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*	Back alignment and structure

>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*	Back alignment and structure

>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}	Back alignment and structure

>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A	Back alignment and structure

>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*	Back alignment and structure

>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*	Back alignment and structure

>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*	Back alignment and structure

>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}	Back alignment and structure

>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1	Back alignment and structure

>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*	Back alignment and structure

>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}	Back alignment and structure

>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1	Back alignment and structure

>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*	Back alignment and structure

>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}	Back alignment and structure

>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*	Back alignment and structure

>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...	Back alignment and structure

>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...	Back alignment and structure

>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1	Back alignment and structure

>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}	Back alignment and structure

>3krb_A Aldose reductase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, oxidoreductase, S genomics; HET: NAP; 1.75A {Giardia lamblia}	Back alignment and structure

>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*	Back alignment and structure

>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*	Back alignment and structure

>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		234
d3eaua1		326	c.1.7.1 (A:36-361) Voltage-dependent K+ channel be	4e-12
d1pz1a_		333	c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillu	5e-12
d1s1pa_		315	c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (ak	6e-12
d1pyfa_		311	c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillu	1e-11
d1afsa_		319	c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase	3e-10
d1mzra_		274	c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase	5e-10
d1lqaa_		346	c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId:	6e-10
d1hqta_		324	c.1.7.1 (A:) Aldose reductase (aldehyde reductase)	3e-09
d1frba_		315	c.1.7.1 (A:) FR-1 (fibroblast growth factor-induce	4e-09
d1qwka_		312	c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematod	6e-09
d1us0a_		314	c.1.7.1 (A:) Aldose reductase (aldehyde reductase)	3e-08
d1ur3m_		298	c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Esc	4e-08
d1hw6a_		262	c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase	5e-08
d1mi3a_		319	c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenu	8e-08
d1gvea_		324	c.1.7.1 (A:) Aflatoxin aldehyde reductase (akr7a1)	8e-07
d1vp5a_		284	c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase	2e-06

>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 326	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: NAD(P)-linked oxidoreductase
family: Aldo-keto reductases (NADP)
domain: Voltage-dependent K+ channel beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.3 bits (150), Expect = 4e-12
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 85  GNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYG 142
           G   L +  +  G W T GG  +I  + A   M    D G+  FD A+ Y    AE + G
Sbjct: 8   GKSGLRVSCLGLGTWVTFGG--QITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLG 65

Query: 143 IFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 202
             I +    R    +               ++   + E +  S  R+ +  +D++  +  
Sbjct: 66  NIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRP 125

Query: 203 DYSNPGY 209
           D + P  
Sbjct: 126 DPNTPME 132

PyMOL of d3eaua1

>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]} Length = 333	Back information, alignment and structure

>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3) {Human (Homo sapiens) [TaxId: 9606]} Length = 315	Back information, alignment and structure

>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus subtilis [TaxId: 1423]} Length = 311	Back information, alignment and structure

>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 319	Back information, alignment and structure

>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Escherichia coli [TaxId: 562]} Length = 274	Back information, alignment and structure

>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]} Length = 346	Back information, alignment and structure

>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 324	Back information, alignment and structure

>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 315	Back information, alignment and structure

>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 312	Back information, alignment and structure

>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]} Length = 314	Back information, alignment and structure

>d1ur3m_ c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Escherichia coli [TaxId: 562]} Length = 298	Back information, alignment and structure

>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]} Length = 262	Back information, alignment and structure

>d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis) [TaxId: 45596]} Length = 319	Back information, alignment and structure

>d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Thermotoga maritima [TaxId: 2336]} Length = 284	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		234
d1ur3m_		298	Hypothetical oxidoreductase YdhF {Escherichia coli	100.0
d1pyfa_		311	Putative oxidoreductase IolS {Bacillus subtilis [T	100.0
d1pz1a_		333	Putative oxidoreductase YhdN {Bacillus subtilis [T	100.0
d1qwka_		312	Hypothetical protein C07D8.6 {Nematode (Caenorhabd	100.0
d1vp5a_		284	2,5-diketo-D-gluconic acid reductase A {Thermotoga	100.0
d1mi3a_		319	Xylose reductase {Fungi (Candida tenuis) [TaxId: 4	100.0
d1us0a_		314	Aldose reductase (aldehyde reductase) {Human (Homo	100.0
d1lqaa_		346	Tas protein {Escherichia coli [TaxId: 562]}	100.0
d1s1pa_		315	Prostaglandin d2 11-ketoreductase (akr1c3) {Human	100.0
d1afsa_		319	3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus	100.0
d3eaua1		326	Voltage-dependent K+ channel beta subunit {Rat (Ra	100.0
d1mzra_		274	2,5-diketo-D-gluconic acid reductase A {Escherichi	100.0
d1hw6a_		262	2,5-diketo-D-gluconic acid reductase A {Corynebact	100.0
d1gvea_		324	Aflatoxin aldehyde reductase (akr7a1) {Rat (Rattus	99.97
d1frba_		315	FR-1 (fibroblast growth factor-induced) protein {M	99.97
d1hqta_		324	Aldose reductase (aldehyde reductase) {Pig (Sus sc	99.97
d3bofa2		300	Cobalamin-dependent methionine synthase MetH, N-te	80.47

>d1ur3m_ c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: NAD(P)-linked oxidoreductase
family: Aldo-keto reductases (NADP)
domain: Hypothetical oxidoreductase YdhF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-36  Score=264.86  Aligned_cols=150  Identities=18%  Similarity=0.192  Sum_probs=130.1

Q ss_pred             ceEEEcCCCCcccccceeccccCCCCCCCCCHHHHHHHHHHHHHhCCCeeecCCCccc--cHHHHHHHHHhhh--hcCCC
Q 026732           79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVR--RERPP  154 (234)
Q Consensus        79 ~~~r~LG~tg~~Vs~lglGt~~~g~~~~~~~~~~~~~~l~~Al~~Gi~~fDTA~~YG~--sE~~lG~al~~~~--r~~~~  154 (234)
                      |++++||++|++||+||||||++++ |+ .+++++.++|++|+|.|||+||||+.||+  +|+++|++|+..+  |+   
T Consensus         2 m~~~~lg~~G~~vs~ig~G~~~~~~-~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~se~~lG~al~~~~~~r~---   76 (298)
T d1ur3m_           2 VQRITIAPQGPEFSRFVMGYWRLMD-WN-MSARQLVSFIEEHLDLGVTTVDHADIYGGYQCEAAFGEALKLAPHLRE---   76 (298)
T ss_dssp             CCEEECSTTCCEEESSEEECTTTTT-TT-CCHHHHHHHHHHHHHHTCCEEECCSSTTTTTHHHHHHHHHHHCGGGTT---
T ss_pred             CCceEeCCCCCEeCCEEEeCcccCC-CC-CCHHHHHHHHHHHHHcCCCEEEeccccCCccccccccccccccccchh---
Confidence            6799999999999999999999975 54 57899999999999999999999999985  8999999999754  44   


Q ss_pred             ceeeeEEeecccCC------CCCCCCHHHHHHHHHHHHHHcCCCcccEEEEeeCCCCCCcHHHHHHHHHHHHHhCCcCeE
Q 026732          155 EFLDKVRGLTKWVP------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEAIGVQV  228 (234)
Q Consensus       155 ~v~~~~~~~tk~~~------~~~~~s~~~i~~al~~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G~ir~I  228 (234)
                      ++++.+|+......      ...+.+++.+++++++||+|||+||||+|++||+++..+ .+|+|++|++++++|+||+|
T Consensus        77 ~~~i~tK~g~~~~~~~~~~~~~~~~s~~~i~~~~~~SL~rL~~d~iDl~~lH~~d~~~~-~~e~~~~l~~lk~~GkIr~i  155 (298)
T d1ur3m_          77 RMEIVSKCGIATTAREENVIGHYITDRDHIIKSAEQSLINLATDHLDLLLIHRPDPLMD-ADEVADAFKHLHQSGKVRHF  155 (298)
T ss_dssp             TCEEEEEECEECTTSTTCSSCEECCCHHHHHHHHHHHHHHHTCSCBSEEEECSCCTTCC-HHHHHHHHHHHHHTTSBCCE
T ss_pred             hhhhhhcccccccCCCcCcccCCCCCHHHHHHHHHhhhhhhccccccccccccccccch-hHHHHHHHHHhhccCcceee
Confidence            55555554322111      123579999999999999999999999999999998887 99999999999999999999


Q ss_pred             EeccCC
Q 026732          229 KLRLLL  234 (234)
Q Consensus       229 GvSN~~  234 (234)
                      |+|||.
T Consensus       156 G~S~~~  161 (298)
T d1ur3m_         156 GVSNFT  161 (298)
T ss_dssp             EEESCC
T ss_pred             cCCCCc
Confidence            999984

PyMOL of d1ur3m_

>d1pyfa_ c.1.7.1 (A:) Putative oxidoreductase IolS {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1qwka_ c.1.7.1 (A:) Hypothetical protein C07D8.6 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1vp5a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1mi3a_ c.1.7.1 (A:) Xylose reductase {Fungi (Candida tenuis) [TaxId: 45596]}	Back information, alignment and structure

>d1us0a_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1afsa_ c.1.7.1 (A:) 3-alpha-hydroxysteroid dehydrogenase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]}	Back information, alignment and structure

>d1frba_ c.1.7.1 (A:) FR-1 (fibroblast growth factor-induced) protein {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure