Citrus Sinensis ID: 026760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQTR
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEcccccccccccccccEEEccccccccEEEEEcHHccHHHHHcccccccHHHEEEEEEEcccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccEEEEEEccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccHcHEEEEEEcccccccccccccEEEEEcccccccEEEEEcHHHcHHHHHHHHHHHHHHHHHHEEEcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHcHHHccccEEEEEEccccccccEEccccHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
MDQVARLFGPAIFEASKLKVLFLgvdeekhpgklprtytlthsdiTSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVhgdgnllnnhpELQEALVWVYFHsnipefnkvecwgplkeavagsseaggtrheirqetsisnwelpepcqetcnccfppmslipwseklplqtenrgtqgqESLQQQTR
Flexible Loop (DISEMBL)
mdqvarlfgpaifeasKLKVLFLGVDEekhpgklprtytlthSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVagsseaggtrHEIRQETsisnwelpePCQETCNCCFPPMSLIPWSEKLPLQTEnrgtqgqeslqqqtr
Low Complexity Region (SEG)
MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQTR
Disordered region (IsUnstruct)
****ARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAV******************ISNWELPEPCQETCNCCFPPMSLIPWS***********************
Disordered Region (DISOPRED)
*DQVARLFGPAIFEASKLKVLFLGVDEE*HPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAV***************************CQETCNCCFPPMSLIPWS***********************
Disordered Region (DISEMBL)
MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEA****************ETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQ*****************
Disordered Region (DISPRO)
MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAG******************NWELPEPCQETCNCCFPPMSLIPWS***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
255537227	273	conserved hypothetical protein [Ricinus	0.982	0.838	0.805	1e-106
224074768	269	predicted protein [Populus trichocarpa]	0.931	0.806	0.789	1e-99
162568912	267	putative staygreen protein [Nicotiana ta	0.961	0.838	0.8	1e-98
224054003	270	predicted protein [Populus trichocarpa]	0.982	0.848	0.754	9e-98
345846659	283	stay green 1 [Pyrus x bretschneideri]	0.978	0.805	0.736	1e-96
351721214	271	senescence-inducible chloroplast stay-gr	0.905	0.778	0.798	4e-96
255637385	271	unknown [Glycine max]	0.905	0.778	0.798	4e-96
162135178	266	stay green protein [Capsicum annuum] gi|	0.957	0.838	0.778	6e-96
350535753	272	senescence-inducible chloroplast stay-gr	0.974	0.834	0.784	1e-94
332079481	263	senescence-inducible chloroplast stay-gr	0.841	0.745	0.834	1e-94

>gi|255537227|ref|XP_002509680.1| conserved hypothetical protein [Ricinus communis] gi|223549579|gb|EEF51067.1| conserved hypothetical protein [Ricinus communis]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/231 (80%), Positives = 201/231 (87%), Gaps = 2/231 (0%)

Query: 4   VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
           VARLFGP+IFEASKLKVLF+GVDE+KHPGKLPRTYTLTHSD+T+KLTLAISQTINNSQLQ
Sbjct: 42  VARLFGPSIFEASKLKVLFVGVDEKKHPGKLPRTYTLTHSDVTAKLTLAISQTINNSQLQ 101

Query: 64  GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
           GWYN+L RDEVVAEWKKVK KMSLHVHCHISGGHFLLD+CARLR+FIF KELPVVLKAFV
Sbjct: 102 GWYNKLYRDEVVAEWKKVKEKMSLHVHCHISGGHFLLDLCARLRYFIFCKELPVVLKAFV 161

Query: 124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQ-ET 182
           HGDGNL NN+PELQEALVWVYFHSNIPEFN+VECWGPLKEA A SS   G  HE  Q ET
Sbjct: 162 HGDGNLFNNYPELQEALVWVYFHSNIPEFNRVECWGPLKEAAAPSSGVYGLPHESNQRET 221

Query: 183 SISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQTR 233
             SNW+LPEPCQE C CCFPPMS IPWS+K P+ TEN     Q  +QQ  +
Sbjct: 222 PASNWDLPEPCQENCECCFPPMSAIPWSQKAPVDTEN-SKGAQNGIQQAAQ 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074768|ref|XP_002304454.1| predicted protein [Populus trichocarpa] gi|222841886|gb|EEE79433.1| predicted protein [Populus trichocarpa]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/219 (78%), Positives = 191/219 (87%), Gaps = 2/219 (0%)

Query: 1   MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNS 60
           +  VARLFGP+IFEASKLKVLFLGVDE+KHPG LPRTYTLTHSDIT+KLTLAISQTINNS
Sbjct: 39  ISPVARLFGPSIFEASKLKVLFLGVDEKKHPGNLPRTYTLTHSDITAKLTLAISQTINNS 98

Query: 61  QLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLK 120
           QLQGW N+L RDEVVAEWKKVKGKMSLHVHCHISGGHFLLD+C RLR+FIF KELPVVLK
Sbjct: 99  QLQGWSNKLYRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLCCRLRYFIFRKELPVVLK 158

Query: 121 AFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQ 180
           AF HGDGNL +++PELQEALVWVYFHSNIPEFNKVECWGPLK+A A  +   G   E ++
Sbjct: 159 AFFHGDGNLFSSYPELQEALVWVYFHSNIPEFNKVECWGPLKDAAAPCTAESGGPTENKE 218

Query: 181 ETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQTEN 219
           +   SNW LPEPCQE C CCFPPMSLIPWSE +P + +N
Sbjct: 219 QA--SNWNLPEPCQENCKCCFPPMSLIPWSEMVPQENKN 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162568912|gb|ABY19382.1| putative staygreen protein [Nicotiana tabacum]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/230 (80%), Positives = 199/230 (86%), Gaps = 6/230 (2%)

Query: 4   VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
           VARLFGPAIFEASKLKVLFLGVDE+KHPGK PRTYTLTHSD+TSKLTLAISQTINNSQLQ
Sbjct: 40  VARLFGPAIFEASKLKVLFLGVDEKKHPGKRPRTYTLTHSDVTSKLTLAISQTINNSQLQ 99

Query: 64  GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
           GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLD+ ARLR++IF KELPVVLKAFV
Sbjct: 100 GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLFARLRYYIFCKELPVVLKAFV 159

Query: 124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIR--QE 181
           HGD NLLNN+PELQEALVWVYFHSNI EFNKVECWGPLKEA A  S +GG   ++R    
Sbjct: 160 HGDKNLLNNYPELQEALVWVYFHSNIQEFNKVECWGPLKEA-ASPSSSGGVGGKMRNTNT 218

Query: 182 TSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQ 231
           TS SNW+LP+PCQE+C+CCFPPMSLIPW       T+    QG   LQ+Q
Sbjct: 219 TSNSNWDLPQPCQESCSCCFPPMSLIPWPSDDISGTDGGPIQG---LQEQ 265

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054003|ref|XP_002298080.1| predicted protein [Populus trichocarpa] gi|222845338|gb|EEE82885.1| predicted protein [Populus trichocarpa]

 Score =  362 bits (928), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 175/232 (75%), Positives = 197/232 (84%), Gaps = 3/232 (1%)

Query: 1   MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNS 60
           +  VARLFGP+IFEASKLKVLFLGVDE+KHPG LPRTYTLTHSD+T+KLTLAISQTINNS
Sbjct: 39  ISPVARLFGPSIFEASKLKVLFLGVDEKKHPGNLPRTYTLTHSDMTAKLTLAISQTINNS 98

Query: 61  QLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLK 120
           QLQGW N+L RDEVVAEWKKVKG MSLHVHCHISGGHFLLD C RLR+FIF +ELPVVLK
Sbjct: 99  QLQGWSNKLYRDEVVAEWKKVKGNMSLHVHCHISGGHFLLDWCCRLRYFIFRRELPVVLK 158

Query: 121 AFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGS-SEAGGTRHEIR 179
           AF HGDG+LL+++PELQEALVWVYFHSNIPEF+KVECWGPLK+A A S SE GG+     
Sbjct: 159 AFFHGDGSLLSSYPELQEALVWVYFHSNIPEFSKVECWGPLKDAAAPSTSETGGSNETEE 218

Query: 180 QETSISNWELPEPCQ-ETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQ 230
                SNW+LPEPCQ E C+CCFPPMSLIPWS+ +PL+ +   +  Q S QQ
Sbjct: 219 LANQSSNWDLPEPCQEENCSCCFPPMSLIPWSKMVPLENKKNPSTPQ-SFQQ 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345846659|gb|AEO19901.1| stay green 1 [Pyrus x bretschneideri]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 176/239 (73%), Positives = 200/239 (83%), Gaps = 11/239 (4%)

Query: 4   VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
           VARLFGPAIFEASKLKVLFLGVDE+KHPGKLPRTYTLTHSDITSKLTLAISQTI+NSQLQ
Sbjct: 44  VARLFGPAIFEASKLKVLFLGVDEKKHPGKLPRTYTLTHSDITSKLTLAISQTIDNSQLQ 103

Query: 64  GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
           GWY++LQRDEVVA+WKKVK KMSLHVHCHISGGHFLLD+ ARLR+FIF KELPVVLKAFV
Sbjct: 104 GWYSKLQRDEVVAQWKKVKNKMSLHVHCHISGGHFLLDLFARLRYFIFCKELPVVLKAFV 163

Query: 124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRH------- 176
           HGDGNL N++PELQ+A VW+YFHS+IPEFNKVECWGPL +A A SS + G  H       
Sbjct: 164 HGDGNLFNSYPELQDASVWIYFHSSIPEFNKVECWGPLIDAAAPSSGSSGGAHHQENNSG 223

Query: 177 -EIRQETSISNWELPEPCQETCNCCFPPMSLIPWSEKLPLQTENR-GTQGQESLQQQTR 233
            E  + TS SNW+LPE CQE C+CCF P++ I WS++LP   + R GT   +S Q QT+
Sbjct: 224 GEGEEATSPSNWDLPETCQEECDCCFTPLTSIAWSQELPHANQTRVGT--HQSFQGQTQ 280

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721214|ref|NP_001236690.1| senescence-inducible chloroplast stay-green protein 2 [Glycine max] gi|58866293|gb|AAW82960.1| senescence-inducible chloroplast stay-green protein 2 [Glycine max]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 174/218 (79%), Positives = 189/218 (86%), Gaps = 7/218 (3%)

Query: 1   MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNS 60
           M  VARLFGPAIFEASKLKVLFLGVDE KHPG LPRTYTLTHSDIT+KLTLAISQTINNS
Sbjct: 41  MVPVARLFGPAIFEASKLKVLFLGVDENKHPGNLPRTYTLTHSDITAKLTLAISQTINNS 100

Query: 61  QLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLK 120
           QLQGWYNRLQRDEVVA+WKKVKGKMSLHVHCHISGGHFLLDI ARLR+FIF KELPVVLK
Sbjct: 101 QLQGWYNRLQRDEVVAQWKKVKGKMSLHVHCHISGGHFLLDILARLRYFIFCKELPVVLK 160

Query: 121 AFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQ 180
           A VHGD NL NN+PELQ+ALVWVYFHSNIPEFNKVECWGPLKEA   S+  GG + E  Q
Sbjct: 161 AVVHGDENLFNNYPELQDALVWVYFHSNIPEFNKVECWGPLKEA---SAPIGGAKEESEQ 217

Query: 181 ETSISN--WELPEPCQETCNCCFPPMSLIP--WSEKLP 214
           ET +S     +P+PCQE C CCFPP++L P  WS+++P
Sbjct: 218 ETLLSKEGLAIPQPCQEECECCFPPLTLSPIQWSQQVP 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637385|gb|ACU19021.1| unknown [Glycine max]

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 174/218 (79%), Positives = 189/218 (86%), Gaps = 7/218 (3%)

Query: 1   MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNS 60
           M  VARLFGPAIFEASKLKVLFLGVDE KHPG LPRTYTLTHSDIT+KLTLAISQTINNS
Sbjct: 41  MVPVARLFGPAIFEASKLKVLFLGVDENKHPGNLPRTYTLTHSDITAKLTLAISQTINNS 100

Query: 61  QLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLK 120
           QLQGWYNRLQRDEVVA+WKKVKGKMSLHVHCHISGGHFLLDI ARLR+FIF KELPVVLK
Sbjct: 101 QLQGWYNRLQRDEVVAQWKKVKGKMSLHVHCHISGGHFLLDILARLRYFIFCKELPVVLK 160

Query: 121 AFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQ 180
           A VHGD NL NN+PELQ+ALVWVYFHSNIPEFNKVECWGPLKEA   S+  GG + E  Q
Sbjct: 161 AVVHGDENLFNNYPELQDALVWVYFHSNIPEFNKVECWGPLKEA---SAPIGGAKEESEQ 217

Query: 181 ETSISN--WELPEPCQETCNCCFPPMSLIP--WSEKLP 214
           ET +S     +P+PCQE C CCFPP++L P  WS+++P
Sbjct: 218 ETFLSKEGLAIPQPCQEECECCFPPLTLSPIQWSQQVP 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162135178|gb|ABX82698.1| stay green protein [Capsicum annuum] gi|170947249|emb|CAN88917.2| chlorophyll retainer (stay green) [Capsicum annuum] gi|171903868|gb|ACB56586.1| chlorophyll retainer [Capsicum annuum]

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 179/230 (77%), Positives = 193/230 (83%), Gaps = 7/230 (3%)

Query: 4   VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
           VARLFGPAIFEASKLKVLFLGVDE+KHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ
Sbjct: 40  VARLFGPAIFEASKLKVLFLGVDEKKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 99

Query: 64  GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
           GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHF+LD+ ARLR++IF KELPVVLKAFV
Sbjct: 100 GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFMLDLFARLRYYIFCKELPVVLKAFV 159

Query: 124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETS 183
           HGD NLL N+PELQ+ALVWVYFHSNI EFNKVECWGPLK+A A  S +G         TS
Sbjct: 160 HGDENLLKNYPELQQALVWVYFHSNIQEFNKVECWGPLKDA-ASPSSSGVGGGMNTSFTS 218

Query: 184 ISN--WELPEPCQETCNCCFPPMSLIPWSEKLPLQTENRGTQGQESLQQQ 231
            SN  W LP+PC+ETC CCFPPMS+IPW    P  T       Q+ LQ+Q
Sbjct: 219 NSNIKWNLPKPCEETCTCCFPPMSVIPW----PSTTNVENGTIQQGLQEQ 264

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535753|ref|NP_001234723.1| senescence-inducible chloroplast stay-green protein 1 [Solanum lycopersicum] gi|68510418|gb|AAY98500.1| senescence-inducible chloroplast stay-green protein 1 [Solanum lycopersicum] gi|171903870|gb|ACB56587.1| green flesh protein [Solanum lycopersicum] gi|257480000|gb|ACV60215.1| green flesh protein [Solanum lycopersicum]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/232 (78%), Positives = 197/232 (84%), Gaps = 5/232 (2%)

Query: 4   VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
           VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ
Sbjct: 40  VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 99

Query: 64  GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
           GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHF+LD+ ARLR +IF KELPVVLKAFV
Sbjct: 100 GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFMLDLFARLRNYIFCKELPVVLKAFV 159

Query: 124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQE-T 182
           HGD NLL N+PELQEALVWVYFHSNI EFNKVECWGPL++A + SS +GG         T
Sbjct: 160 HGDENLLRNYPELQEALVWVYFHSNIQEFNKVECWGPLRDATSPSSSSGGVGGVKSTSFT 219

Query: 183 SISN--WELPEPCQETCNCCFPPMSLIPW-SEKLPLQTENRGTQGQESLQQQ 231
           S SN  WELP+PC+E C CCFPP+S++PW S  L    E  GT  Q+ LQ+Q
Sbjct: 220 SNSNKKWELPKPCEEACACCFPPVSVMPWLSSNLDGVGEENGTI-QQGLQEQ 270

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332079481|gb|AEE00201.1| senescence-inducible chloroplast stay-green protein [Medicago truncatula]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/205 (83%), Positives = 181/205 (88%), Gaps = 9/205 (4%)

Query: 4   VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
           VARLFGPAIFEASKLKVLFLG+DE+KHPG LPRTYTLTHSD+TSKLTLAISQTINNSQLQ
Sbjct: 44  VARLFGPAIFEASKLKVLFLGIDEDKHPGNLPRTYTLTHSDVTSKLTLAISQTINNSQLQ 103

Query: 64  GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
           GWYNRLQRDEVVA+WKKVKGKMSLHVHCHISGGHFLLDI ARLR+FIF KELPVVLKAFV
Sbjct: 104 GWYNRLQRDEVVAQWKKVKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFV 163

Query: 124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETS 183
           HGDGNL NN+PELQEALVWVYFHS IPEFNKVECWGPLKEA   S    GT+ + RQ   
Sbjct: 164 HGDGNLFNNYPELQEALVWVYFHSKIPEFNKVECWGPLKEA---SQPTSGTQRD-RQ--- 216

Query: 184 ISNWELPEPCQETCNCCFPPMSLIP 208
             N  LP+PCQETC CCFPP+ L P
Sbjct: 217 --NLTLPQPCQETCECCFPPLKLSP 239

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
TAIR|locus:2127153	268	NYE1 "AT4G22920" [Arabidopsis	0.884	0.768	0.753	3.1e-83
TAIR|locus:2137020	271	AT4G11910 "AT4G11910" [Arabido	0.862	0.741	0.747	3.6e-82
TAIR|locus:4515103377	273	AT4G11911 "AT4G11911" [Arabido	0.854	0.728	0.706	3.5e-75
TAIR|locus:2037154	260	AT1G44000 "AT1G44000" [Arabido	0.716	0.642	0.534	1e-45

TAIR|locus:2127153 NYE1 "AT4G22920" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 168/223 (75%), Positives = 182/223 (81%)

Query:     4 VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
             VARLFGPAIFE+SKLKVLFLGVDE+KHP  LPRTYTLTHSDIT+KLTLAISQ+INNSQLQ
Sbjct:    48 VARLFGPAIFESSKLKVLFLGVDEKKHPSTLPRTYTLTHSDITAKLTLAISQSINNSQLQ 107

Query:    64 GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
             GW NRL RDEVVAEWKKVKGKMSLHVHCHISGGHFLLD+ A+ R+FIF KELPVVLKAFV
Sbjct:   108 GWANRLYRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLFAKFRYFIFCKELPVVLKAFV 167

Query:   124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETS 183
             HGDGNLLNN+PELQEALVWVYFHSN+ EFNKVECWGPL EAV   S  G   H  + ET 
Sbjct:   168 HGDGNLLNNYPELQEALVWVYFHSNVNEFNKVECWGPLWEAV---SPDG---H--KTET- 218

Query:   184 ISNWELPEP-CQETCNCCFPPMSLIPWSEKLPLQTEN--RGTQ 223
                  LPE  C + C+CCFP +S IPWS  L  +  N   GTQ
Sbjct:   219 -----LPEARCADECSCCFPTVSSIPWSHSLSNEGVNGYSGTQ 256

GO:0015996 "chlorophyll catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2137020 AT4G11910 "AT4G11910" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 157/210 (74%), Positives = 176/210 (83%)

Query:     4 VARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQ 63
             VARLFGPAIFEASKLKVLFLGVDE+KHP KLPRTYTLTHSDIT+KLTLAISQ+INNSQLQ
Sbjct:    44 VARLFGPAIFEASKLKVLFLGVDEKKHPAKLPRTYTLTHSDITAKLTLAISQSINNSQLQ 103

Query:    64 GWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFV 123
             GW N+L RDEVV EWKKVKGKMSLHVHCHISGGHF L++ A+LR++IF KELPVVL+AF 
Sbjct:   104 GWANKLFRDEVVGEWKKVKGKMSLHVHCHISGGHFFLNLIAKLRYYIFCKELPVVLEAFA 163

Query:   124 HGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQETS 183
             HGD  LLNNHPELQE+ VWVYFHSNIPE+NKVECWGPL EA++     G T H+ + ET 
Sbjct:   164 HGDEYLLNNHPELQESPVWVYFHSNIPEYNKVECWGPLWEAMSQHQHDGRT-HK-KSET- 220

Query:   184 ISNWELPE-PCQETCNCCFPPMSLIPWSEK 212
                  LPE PC + C CCFP +S IPWS +
Sbjct:   221 -----LPELPCPDECKCCFPTVSTIPWSHR 245

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:4515103377 AT4G11911 "AT4G11911" [Arabidopsis thaliana (taxid:3702)]

 Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
 Identities = 149/211 (70%), Positives = 165/211 (78%)

Query:     1 MDQVARLFGPAIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNS 60
             M  VARLFG AIFEASKL V FLGVDE+KHP  LPRTYT THSDIT+KLTLAIS +INNS
Sbjct:    41 MFPVARLFGQAIFEASKLNVKFLGVDEKKHPPNLPRTYTFTHSDITAKLTLAISHSINNS 100

Query:    61 QLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLK 120
             QLQGW NRL RDEVVAEW+KVK  MSLHVHCHISG HFLLD+ A LR+FIF KELP+VLK
Sbjct:   101 QLQGWANRLYRDEVVAEWRKVKSNMSLHVHCHISGDHFLLDLIAELRYFIFCKELPMVLK 160

Query:   121 AFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSEAGGTRHEIRQ 180
             AFVHGD N+LNN+PEL EA VWVYFHSNIP+FNKVECWG L EA         T H+  +
Sbjct:   161 AFVHGDENMLNNYPELHEAFVWVYFHSNIPKFNKVECWGRLCEA---------TSHDGCK 211

Query:   181 ETSISNWELPEP-CQETCNCCFPPMSLIPWS 210
               +     LPEP C + C+CCFP +S IPWS
Sbjct:   212 TPTCEI--LPEPPCFDKCSCCFPTVSTIPWS 240

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037154 AT1G44000 "AT1G44000" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 93/174 (53%), Positives = 122/174 (70%)

Query:     1 MDQVARLFGP-AIFEASKLKVLFLG-VDEEKHPGKL--PRTYTLTHSDITSKLTLAISQT 56
             + +  RL  P A F++SKLKV FLG + E K  G +  PRTY L+H D T+ LTL IS  
Sbjct:    60 VSEAVRLLVPQANFDSSKLKVEFLGELLENKSNGGIITPRTYILSHCDFTANLTLTISNV 119

Query:    57 INNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELP 116
             IN  QL+GWY   ++D+VVAEWKKV  ++ LH+HC +SG   L D+ A LR+ IFSKELP
Sbjct:   120 INLDQLEGWY---KKDDVVAEWKKVNDELRLHIHCCVSGMSLLQDVAAELRYHIFSKELP 176

Query:   117 VVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAVAGSSE 170
             +VLKA VHGD  +   +PEL +A VWVYFHS+ P++N++ECWGPLK+A  G  +
Sbjct:   177 LVLKAVVHGDSVMFRENPELMDAYVWVYFHSSTPKYNRIECWGPLKDAAKGKQQ 230


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 22  0.41    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  218 KB (2120 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.08u 0.11s 20.19t   Elapsed:  00:00:01
  Total cpu time:  20.08u 0.11s 20.19t   Elapsed:  00:00:01
  Start:  Sat May 11 04:44:59 2013   End:  Sat May 11 04:45:00 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009658 "chloroplast organization" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0018023401 hypothetical protein (269 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	233
pfam12638	149	pfam12638, Staygreen, Staygreen protein	3e-88

>gnl|CDD|221681 pfam12638, Staygreen, Staygreen protein

 Score =  256 bits (657), Expect = 3e-88
 Identities = 92/154 (59%), Positives = 111/154 (72%), Gaps = 6/154 (3%)

Query: 11  AIFEASKLKVLFLGVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQ 70
           A F+ SKL V FLG   E  P  +PR YTLTHSD+T+ LTL I  T N  QL    N L 
Sbjct: 1   AKFDPSKLSVEFLGPITETGPI-IPRRYTLTHSDVTANLTLTIGNTYNLDQL----NTLL 55

Query: 71  RDEVVAEWKKVKGKMSLHVHCHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLL 130
           RDEV+AEWKKV G+ SLHVHC++SGG+  LD+ A+ R++IF KELP+VLKA  +GD  L 
Sbjct: 56  RDEVLAEWKKVNGQYSLHVHCYVSGGNLDLDLAAK-RYYIFRKELPLVLKAIRYGDRVLF 114

Query: 131 NNHPELQEALVWVYFHSNIPEFNKVECWGPLKEA 164
             HPEL  A VWVYFHS+ PEFN+VECWGPL++A
Sbjct: 115 KEHPELLNAPVWVYFHSSSPEFNRVECWGPLRDA 148

This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PF12638	151	Staygreen: Staygreen protein; InterPro: IPR024438	100.0

>PF12638 Staygreen: Staygreen protein; InterPro: IPR024438 This domain is found in a family of proteins have been implicated in chlorophyll degradation [, ]

Probab=100.00  E-value=3.6e-76  Score=492.43  Aligned_cols=149  Identities=58%  Similarity=1.016  Sum_probs=144.7

Q ss_pred             CCCCCCceEEEe-ccCCcCCCCCCCcceeeccCCCCCceEEEEccccchhhhhhhccccccceeeeEEeeeCCeeEEEEE
Q 026760           12 IFEASKLKVLFL-GVDEEKHPGKLPRTYTLTHSDITSKLTLAISQTINNSQLQGWYNRLQRDEVVAEWKKVKGKMSLHVH   90 (233)
Q Consensus        12 ~Fnp~KL~V~f~-gvt~~~~P~~ipRrYTLTHsD~T~~LfLtIg~~fn~dqL~gwy~r~~RDEVlAEW~~~~g~~~LhV~   90 (233)
                      +|||+||+|+|+ |++ +++|+ +||||||||||+||+|||+||.+||+|||   ||++|||||||||++++|+|+||||
T Consensus         2 ~F~p~KL~V~f~~~~t-~~~P~-~pR~YTLTHsD~T~~L~L~Ig~~~~~d~l---~~~~~RDEVlaEW~~~~~~~~L~v~   76 (151)
T PF12638_consen    2 KFNPSKLSVEFRGGIT-PTHPI-IPRRYTLTHSDFTGELFLTIGNEFNYDQL---YNRLMRDEVLAEWKKVNGQYSLHVY   76 (151)
T ss_pred             CCChHHeEEEecCCCC-cCCCC-CCceEEeecCCccCceEEEeeHHhhHHHh---hccchhceEEEEEEEcCCEEEEEEE
Confidence            799999999999 555 99998 99999999999999999999999999999   7889999999999999999999999


Q ss_pred             EEeeCCccchhHHHHHHHHHHhhhhhhhhhHhhhcChhhhccCcccCCCeeEEEEeeCCCCCcceeeeccccccc
Q 026760           91 CHISGGHFLLDICARLRFFIFSKELPVVLKAFVHGDGNLLNNHPELQEALVWVYFHSNIPEFNKVECWGPLKEAV  165 (233)
Q Consensus        91 c~VsG~~~~~~~~a~~Ry~IF~kELPLvLkAI~yGD~~lF~~~PeL~~ApI~V~FhS~~p~fnr~E~wG~l~da~  165 (233)
                      |||||+|++++++|++||+||+||||||||||+|||+.||++||+|++|||||||||++|+||++||||+|+||.
T Consensus        77 ~~V~g~~~~~~~aa~~Ry~IF~kELPl~L~Ai~yGD~~lf~~~P~L~~a~I~V~F~S~~p~~n~~e~wG~~~dy~  151 (151)
T PF12638_consen   77 CYVSGGHFDKDLAARLRYYIFRKELPLALKAIRYGDRSLFAEHPELDDAPIWVHFHSSYPEFNRIECWGTLRDYA  151 (151)
T ss_pred             EEECCCccChhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhChhhcCCCEEEEEecCCCCCCcEEEECChHhCC
Confidence            999999999998888899999999999999999999999999999999999999999999999999999999984

Intriguingly members of this family are also found in non-photosynthetic bacteria.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00