Citrus Sinensis ID: 026774

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL
cccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHc
MASASDSWIKEYNEAIKLADDingmiserssmpasgpesqRHASAIRRKITILGTRLDSLQSLLsklpgkqpisekEMNRRKDMLANLRSKVNQMASTLnmsnfanrdsllgpeiksadvmnratgldnqglvgFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIddldqhvdvtdSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL
MASASDSWIKEYNEAIKLADDINGMISERSsmpasgpesqRHASAIRRKITILGTRLDSLQSLlsklpgkqpisekemnRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDqhvdvtdsrlrrVQKNLailnkrtkggCTCMCMLLAVIGIVVLVVVIYMLIKYL
MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMllavigivvlvvviymliKYL
**********EYNEAIKL******************************KITILGTR************************************************************************NQGLVGFQRQI*********KLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKY*
**SASDSWIKEYNEAIKLADDING*************************ITILGTRLDSLQ*******************RKDMLAN******************************************QGLVGF*************KLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDV******************TKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL
MASASDSWIKEYNEAIKLADDINGMISER***************AIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL
*****DSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN***********************ATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL
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MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q9SA23232 Syntaxin-51 OS=Arabidopsi yes no 0.995 1.0 0.742 1e-100
Q94KK7233 Syntaxin-52 OS=Arabidopsi no no 1.0 1.0 0.733 1e-99
Q54IX6250 Probable syntaxin-8B OS=D yes no 0.866 0.808 0.3 2e-15
Q946Y7245 Syntaxin-61 OS=Arabidopsi no no 0.948 0.902 0.247 2e-11
Q553P5152 Syntaxin-8A OS=Dictyostel no no 0.369 0.565 0.352 2e-08
Q9UNK0236 Syntaxin-8 OS=Homo sapien yes no 0.836 0.826 0.241 2e-05
Q3T075236 Syntaxin-8 OS=Bos taurus yes no 0.828 0.817 0.230 3e-05
O88983236 Syntaxin-8 OS=Mus musculu yes no 0.836 0.826 0.251 0.0005
Q9Z2Q7236 Syntaxin-8 OS=Rattus norv yes no 0.836 0.826 0.251 0.0005
>sp|Q9SA23|SYP51_ARATH Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1 Back     alignment and function desciption
 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/233 (74%), Positives = 208/233 (89%), Gaps = 1/233 (0%)

Query: 1   MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSL 60
           MAS+SDSW++ YNEA+KL+++INGMISERSS   +GP++QR ASAIRRKITI G +LDSL
Sbjct: 1   MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSL 60

Query: 61  QSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADV 120
           QSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D 
Sbjct: 61  QSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDS 119

Query: 121 MNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQ 180
           M+R TG+DNQG+VG+QRQ+MREQDEGLE+LE TV+STKHIALAV+EELDL TRLIDDLD 
Sbjct: 120 MSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDY 179

Query: 181 HVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL 233
           HVDVTDSRLRRVQK+LA++NK  + GC+CM MLL+V+GIV L VVI+ML+KY+
Sbjct: 180 HVDVTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIWMLVKYM 232
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q94KK7|SYP52_ARATH Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1 Back     alignment and function description
>sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1 Back     alignment and function description
>sp|Q946Y7|SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1 Back     alignment and function description
>sp|Q553P5|STX8A_DICDI Syntaxin-8A OS=Dictyostelium discoideum GN=syn8A PE=1 SV=1 Back     alignment and function description
>sp|Q9UNK0|STX8_HUMAN Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2 Back     alignment and function description
>sp|Q3T075|STX8_BOVIN Syntaxin-8 OS=Bos taurus GN=STX8 PE=2 SV=1 Back     alignment and function description
>sp|O88983|STX8_MOUSE Syntaxin-8 OS=Mus musculus GN=Stx8 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2Q7|STX8_RAT Syntaxin-8 OS=Rattus norvegicus GN=Stx8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
356553533 362 PREDICTED: syntaxin-51-like [Glycine max 0.995 0.640 0.862 1e-115
255638594232 unknown [Glycine max] 0.995 1.0 0.854 1e-114
225460841232 PREDICTED: syntaxin-51 [Vitis vinifera] 0.991 0.995 0.835 1e-113
357459803233 Syntaxin-52 [Medicago truncatula] gi|355 0.982 0.982 0.858 1e-110
388493218229 unknown [Medicago truncatula] 0.982 1.0 0.858 1e-110
388494322229 unknown [Medicago truncatula] 0.982 1.0 0.849 1e-109
449467357233 PREDICTED: syntaxin-51-like [Cucumis sat 1.0 1.0 0.815 1e-109
356567068229 PREDICTED: syntaxin-51-like [Glycine max 0.982 1.0 0.854 1e-106
356527099228 PREDICTED: syntaxin-51-like [Glycine max 0.974 0.995 0.861 1e-106
449463737233 PREDICTED: syntaxin-52-like [Cucumis sat 1.0 1.0 0.793 1e-106
>gi|356553533|ref|XP_003545109.1| PREDICTED: syntaxin-51-like [Glycine max] Back     alignment and taxonomy information
 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/233 (86%), Positives = 220/233 (94%), Gaps = 1/233 (0%)

Query: 1   MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSL 60
           MAS+SDSW+KEYNEA+KLADDI+GMISE+SS PASGPE+Q H+SAIRRKITILGTRLDSL
Sbjct: 131 MASSSDSWVKEYNEALKLADDISGMISEQSSFPASGPETQHHSSAIRRKITILGTRLDSL 190

Query: 61  QSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADV 120
           QSLLSKLPGKQPISEKEMNRRKDML+NLRSKVNQMASTLNMSNFANRDSLLGPE K  D 
Sbjct: 191 QSLLSKLPGKQPISEKEMNRRKDMLSNLRSKVNQMASTLNMSNFANRDSLLGPERK-PDA 249

Query: 121 MNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQ 180
           M R  GLDN GLVG QRQIM+EQD+GLE+LEETV STKHIALAVNEELDLHTRLIDDLDQ
Sbjct: 250 MTRMVGLDNNGLVGLQRQIMKEQDDGLEQLEETVASTKHIALAVNEELDLHTRLIDDLDQ 309

Query: 181 HVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL 233
           HVDVTDSRLRRVQKNLA+LNKRTKGGC+CMCMLL+V+GIV L+VVI++L+KYL
Sbjct: 310 HVDVTDSRLRRVQKNLAVLNKRTKGGCSCMCMLLSVVGIVALIVVIWLLVKYL 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255638594|gb|ACU19604.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225460841|ref|XP_002277100.1| PREDICTED: syntaxin-51 [Vitis vinifera] gi|297737506|emb|CBI26707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357459803|ref|XP_003600182.1| Syntaxin-52 [Medicago truncatula] gi|355489230|gb|AES70433.1| Syntaxin-52 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388493218|gb|AFK34675.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388494322|gb|AFK35227.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449467357|ref|XP_004151390.1| PREDICTED: syntaxin-51-like [Cucumis sativus] gi|449482640|ref|XP_004156357.1| PREDICTED: syntaxin-51-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567068|ref|XP_003551745.1| PREDICTED: syntaxin-51-like [Glycine max] Back     alignment and taxonomy information
>gi|356527099|ref|XP_003532151.1| PREDICTED: syntaxin-51-like [Glycine max] Back     alignment and taxonomy information
>gi|449463737|ref|XP_004149588.1| PREDICTED: syntaxin-52-like [Cucumis sativus] gi|449503191|ref|XP_004161879.1| PREDICTED: syntaxin-52-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2032835232 SYP51 "syntaxin of plants 51" 0.905 0.909 0.75 3.6e-82
TAIR|locus:2019858233 SYP52 "syntaxin of plants 52" 0.909 0.909 0.745 7.4e-82
TAIR|locus:2032815193 AT1G16230 "AT1G16230" [Arabido 0.802 0.968 0.573 1.7e-50
TAIR|locus:504956222199 AT1G16225 "AT1G16225" [Arabido 0.716 0.839 0.5 8.3e-35
DICTYBASE|DDB_G0288439250 syn8B "putative t-SNARE family 0.884 0.824 0.288 1.9e-19
UNIPROTKB|F1P0S2236 STX8 "Uncharacterized protein" 0.849 0.838 0.283 2.3e-16
RGD|61917236 Stx8 "syntaxin 8" [Rattus norv 0.858 0.847 0.257 8.8e-15
MGI|MGI:1890156236 Stx8 "syntaxin 8" [Mus musculu 0.858 0.847 0.257 1.8e-14
UNIPROTKB|Q9UNK0236 STX8 "Syntaxin-8" [Homo sapien 0.858 0.847 0.247 5.6e-13
UNIPROTKB|Q3T075236 STX8 "Syntaxin-8" [Bos taurus 0.858 0.847 0.247 3.9e-12
TAIR|locus:2032835 SYP51 "syntaxin of plants 51" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
 Identities = 159/212 (75%), Positives = 189/212 (89%)

Query:     1 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSL 60
             MAS+SDSW++ YNEA+KL+++INGMISERSS   +GP++QR ASAIRRKITI G +LDSL
Sbjct:     1 MASSSDSWMRAYNEALKLSEEINGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSL 60

Query:    61 QSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADV 120
             QSLL+++ GK PISEKEMNRRKDM+ NLRSK NQMA+ LNMSNFANRDSLLGP+IK  D 
Sbjct:    61 QSLLAEIHGK-PISEKEMNRRKDMVGNLRSKANQMANALNMSNFANRDSLLGPDIKPDDS 119

Query:   121 MNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQ 180
             M+R TG+DNQG+VG+QRQ+MREQDEGLE+LE TV+STKHIALAV+EELDL TRLIDDLD 
Sbjct:   120 MSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDY 179

Query:   181 HVDVTDSRLRRVQKNLAILNKRTKGGCTCMCM 212
             HVDVTDSRLRRVQK+LA++NK  + GC+CM M
Sbjct:   180 HVDVTDSRLRRVQKSLAVMNKNMRSGCSCMSM 211
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA;TAS
GO:0010008 "endosome membrane" evidence=NAS;TAS
GO:0005773 "vacuole" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000902 "cell morphogenesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0016049 "cell growth" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2019858 SYP52 "syntaxin of plants 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032815 AT1G16230 "AT1G16230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956222 AT1G16225 "AT1G16225" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288439 syn8B "putative t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0S2 STX8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|61917 Stx8 "syntaxin 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1890156 Stx8 "syntaxin 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UNK0 STX8 "Syntaxin-8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T075 STX8 "Syntaxin-8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94KK7SYP52_ARATHNo assigned EC number0.73391.01.0nono
Q9SA23SYP51_ARATHNo assigned EC number0.74240.99571.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.2__2261__AT1G79590.2
annotation not avaliable (233 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
pfam0573962 pfam05739, SNARE, SNARE domain 1e-09
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 1e-05
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 2e-04
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 143 QDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202
           +DE LE+LE ++   K + L + EE++    L+D +D +VD T SR+ R  K L    + 
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 203 TK 204
            K
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 99.8
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.77
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.64
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.64
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.61
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 99.52
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.5
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 99.42
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.33
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.24
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.21
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 98.98
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 98.89
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 98.8
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 98.74
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 98.68
KOG2678244 consensus Predicted membrane protein [Function unk 97.95
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.65
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 97.6
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 97.45
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.42
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 97.07
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.05
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 97.02
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 96.91
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 96.78
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 96.59
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 95.63
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 95.14
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 94.12
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 93.98
KOG2678244 consensus Predicted membrane protein [Function unk 93.29
PHA0281971 hypothetical protein; Provisional 93.18
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 92.86
PF1116698 DUF2951: Protein of unknown function (DUF2951); In 92.74
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 92.58
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 92.27
PHA0305472 IMV membrane protein; Provisional 92.02
PHA0284475 putative transmembrane protein; Provisional 90.99
PHA0265081 hypothetical protein; Provisional 90.36
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 90.32
PF01519102 DUF16: Protein of unknown function DUF16; InterPro 90.0
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 88.32
PF1257572 DUF3753: Protein of unknown function (DUF3753); In 88.27
PF07889126 DUF1664: Protein of unknown function (DUF1664); In 87.83
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 87.8
PF0553175 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr 87.44
PRK0052372 hypothetical protein; Provisional 87.08
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 86.51
PF0614384 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro 86.4
PHA0297569 hypothetical protein; Provisional 85.75
PHA0284982 putative transmembrane protein; Provisional 84.99
PRK10884206 SH3 domain-containing protein; Provisional 84.72
PRK11637 428 AmiB activator; Provisional 84.57
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 84.54
PRK0184472 hypothetical protein; Provisional 83.29
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 83.24
PF1380096 Sigma_reg_N: Sigma factor regulator N-terminal 83.06
PRK11637 428 AmiB activator; Provisional 81.68
PF06024101 DUF912: Nucleopolyhedrovirus protein of unknown fu 81.35
PF0500879 V-SNARE: Vesicle transport v-SNARE protein N-termi 81.24
PHA0269270 hypothetical protein; Provisional 81.03
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 80.73
PRK0102677 tetrahydromethanopterin S-methyltransferase subuni 80.48
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 80.18
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=9.3e-37  Score=248.96  Aligned_cols=227  Identities=43%  Similarity=0.697  Sum_probs=197.1

Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCC-CchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHH
Q 026774            1 MASASDSWIKEYNEAIKLADDINGMISERSSMPAS-GPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMN   79 (233)
Q Consensus         1 m~s~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~-~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~   79 (233)
                      |+|+.|||+..|.++.+..+.++..+++|..+... +++..+.+..|++.+...-.+++++...+.+.|++++++..|++
T Consensus         1 ~~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~   80 (235)
T KOG3202|consen    1 MLSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELS   80 (235)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHH
Confidence            78999999999999999999999999999987666 56678899999977777777777777777899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccccccC---CCCcCCCCCCCh--hhhhcccCCCc-hhHHHHHHHHHHHHHHHHHHHHHH
Q 026774           80 RRKDMLANLRSKVNQMASTLNMSNFAN---RDSLLGPEIKSA--DVMNRATGLDN-QGLVGFQRQIMREQDEGLEKLEET  153 (233)
Q Consensus        80 ~R~~~~~~l~~~l~~l~~~~~~~~~~~---r~~l~~~~~~~~--~e~~~~~~~~~-~~~~~~q~~~~~~qd~~l~~l~~~  153 (233)
                      +|+.++.+++.++.+++..|......+   |..++++...|.  .......+.|+ .+..++|++++++||+.||.|+++
T Consensus        81 ~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~t  160 (235)
T KOG3202|consen   81 RRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSAT  160 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997643333   777787766563  34556677785 667788999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 026774          154 VVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYM  228 (233)
Q Consensus       154 v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~  228 (233)
                      |+++|++|..||+|+++|+.+||++++.||.|+.++.++++++.++.+. .+.|.+||+++++++++++.|+||+
T Consensus       161 i~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~-~s~~~~~~~il~l~~~~~lvv~i~~  234 (235)
T KOG3202|consen  161 VQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRM-ASQCSQWCAILLLVGLLLLVVIIFI  234 (235)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999994 4558888888777777777777764

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PHA02819 hypothetical protein; Provisional Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PHA03054 IMV membrane protein; Provisional Back     alignment and domain information
>PHA02844 putative transmembrane protein; Provisional Back     alignment and domain information
>PHA02650 hypothetical protein; Provisional Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2 Back     alignment and domain information
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [] Back     alignment and domain information
>PRK00523 hypothetical protein; Provisional Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size Back     alignment and domain information
>PHA02975 hypothetical protein; Provisional Back     alignment and domain information
>PHA02849 putative transmembrane protein; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK01844 hypothetical protein; Provisional Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins Back     alignment and domain information
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles Back     alignment and domain information
>PHA02692 hypothetical protein; Provisional Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 1e-17
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 1e-16
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 2e-06
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 5e-04
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
 Score = 73.3 bits (180), Expect = 1e-17
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAI 198
            M+EQD GL+ L   +   K +   +  ELD    +IDDL   V+ TD +LR   + + +
Sbjct: 3   HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62

Query: 199 LNK 201
           +++
Sbjct: 63  VDR 65
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 99.73
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.66
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 99.62
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 99.55
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 99.54
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 99.53
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 99.47
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.45
3b5n_D64 Protein transport protein SEC9; snare complex, syn 99.44
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.36
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.29
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.23
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.16
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.12
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.04
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.03
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 99.0
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 98.2
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 97.66
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 97.26
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 97.16
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 97.01
1s94_A180 S-syntaxin; three helix bundle, structural plastic 96.91
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 96.86
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.56
2nps_C81 Vesicle transport through interaction with T- snar 96.04
3b5n_C70 Protein transport protein SEC9; snare complex, syn 95.93
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 95.91
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 95.63
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 94.65
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 92.57
1vcs_A102 Vesicle transport through interaction with T- snar 90.82
2qyw_A102 Vesicle transport through interaction with T-SNAR 90.64
2k48_A107 Nucleoprotein; viral protein; NMR {Andes virus} 85.37
2ic6_A78 Nucleocapsid protein; hantavirus, bunyaviridae, ss 82.13
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 81.97
4fi5_A113 Nucleoprotein; structural genomics, niaid, nationa 80.87
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.73  E-value=8e-18  Score=116.37  Aligned_cols=76  Identities=25%  Similarity=0.322  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 026774          132 LVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGC  207 (233)
Q Consensus       132 ~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~  207 (233)
                      .++.|++++++||+.|+.|+.+|.+||++|.+||+||+.||++||+|+++||+|..+|..+++++++++++++++|
T Consensus         6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~   81 (82)
T 2nps_D            6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR   81 (82)
T ss_dssp             ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            4577889999999999999999999999999999999999999999999999999999999999999999988765
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1 Back     alignment and structure
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V Back     alignment and structure
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus} Back     alignment and structure
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus} Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1lvfa_106 a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Ra 0.001
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 29  RSSMPASGPESQRHASAIRRKITILGTRLDSLQ---SLLSKLPGKQPISEKEMNRRKDML 85
           +    A+  E     + +R  +  +   L+ L    S++   P K  +   E++ RK  +
Sbjct: 30  QGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDATELSIRKAFI 89

Query: 86  ANLRSKVNQMASTLNMS 102
            + R  V  M   ++ S
Sbjct: 90  TSTRQIVRDMKDQMSAS 106

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 99.46
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 97.81
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 96.75
d1vcsa189 Vesicle transport v-SNARE protein Vti1-like 2 {Mou 88.29
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 6, SNAP-25 homolog
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.9e-13  Score=96.11  Aligned_cols=96  Identities=18%  Similarity=0.299  Sum_probs=86.3

Q ss_pred             CCcHHHHHHHHHHHHHHHHHhhHhhhCCCCC-----CchhHHHHHHHHHHHHHHHHhHHHHHHHHh---cCCCCCCCCHH
Q 026774            5 SDSWIKEYNEAIKLADDINGMISERSSMPAS-----GPESQRHASAIRRKITILGTRLDSLQSLLS---KLPGKQPISEK   76 (233)
Q Consensus         5 ~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~-----~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~---~~~~~~~~~~~   76 (233)
                      .|||+.+.++|...+..++..+.+|..++..     +++...+..++++.|..++++|.+|++.+.   ++|.+|++++.
T Consensus         1 eDPF~~v~~EVq~s~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~~   80 (106)
T d1lvfa_           1 EDPFFVVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDAT   80 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCHH
Confidence            5999999999999999999999999865432     235667899999999999999999999974   78999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Q 026774           77 EMNRRKDMLANLRSKVNQMASTLN  100 (233)
Q Consensus        77 E~~~R~~~~~~l~~~l~~l~~~~~  100 (233)
                      |+.+|++++...+.++.+++..++
T Consensus        81 ei~~Rr~fi~~~~~~I~~~~~~l~  104 (106)
T d1lvfa_          81 ELSIRKAFITSTRQIVRDMKDQMS  104 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998775
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure