Citrus Sinensis ID: 026801

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MLVFDSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVLG
ccccccccccccccccccccccccEEEEEEEEHHHHccccEEEEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEcccccccccEEEEEEEEEEEEEccccccccEEEEccccccccccccccEEEEEEEcccccEEEEcccEEEEEEEcHHHHccccEEEEEcccccEEEEccccccccccEEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHHc
cccHHHHccccccccccccccccccEEEEEEEHHHHHcccEEEEEEccEEEccccccccccccccccEEEcccccccEEEcccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccccccEEEEEEEcccccEEEccccEEEEEEEEHHHHHccccEEEEcccccEEEEEEccccccccEEEEcccccccccccccccEEEEEEEEccccccHHHHHHHHHHcc
mlvfdsffgggpmeedekivkgdDVIVELDATLEdlymggslkvwreknvikpapgkrrcncrnevyhkqigpgmFQQMTEQVCDQCQnvkyeregYFVTVDIEkgmqdgqevvfyedgepkidgepgdlkfrirtaphdrfrregnnlhTTVTVTLVQALVGFEKTIEHLDEHLVDistkgitkpkevrkfggegmplhfsnkkgdlyITFEvlfpttltedQKTRIKEVLG
mlvfdsffgggpmeedekivkgDDVIVELDATLEDLymggslkvwreknvikpapgkrrcncRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDgepkidgepgdlkFRIRTAPhdrfrregnnlhttVTVTLVQALVGFEKTIEHLdehlvdistkgitkpkevRKFGGEGMPLHFSNKKGDLYITFEVlfpttltedqktrikevlg
MLVFDSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNlhttvtvtlvqalvGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVLG
******FF*********KIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYED***********LKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLT************
MLVFDSF*********************LDATLEDLYMGGSLKVWREKNVIKPAPGKR***CRNEVYHKQIGPGMFQQMT************EREGYFVTVDIEKGMQDGQEVVFYEDGE**IDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVLG
MLVFDSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVLG
********************KGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVLG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLVFDSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q6TUG0358 DnaJ homolog subfamily B yes no 0.952 0.620 0.5 1e-53
Q99KV1358 DnaJ homolog subfamily B yes no 0.948 0.617 0.502 2e-53
Q5RAJ6358 DnaJ homolog subfamily B yes no 0.948 0.617 0.488 8e-53
Q9UBS4358 DnaJ homolog subfamily B yes no 0.948 0.617 0.488 8e-53
P81999358 DnaJ homolog subfamily B no no 0.948 0.617 0.484 2e-52
Q3ZBA6358 DnaJ homolog subfamily B yes no 0.948 0.617 0.479 3e-52
Q8MPX3355 DnaJ homolog dnj-20 OS=Ca yes no 0.909 0.597 0.453 6e-47
Q626I7382 DnaJ homolog dnj-20 OS=Ca N/A no 0.909 0.554 0.402 1e-41
Q8WW22397 DnaJ homolog subfamily A no no 0.922 0.541 0.352 1e-28
Q9JMC3397 DnaJ homolog subfamily A no no 0.922 0.541 0.348 4e-28
>sp|Q6TUG0|DJB11_RAT DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1 Back     alignment and function desciption
 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/224 (50%), Positives = 147/224 (65%), Gaps = 2/224 (0%)

Query: 11  GPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQ 70
            P ++D  I +G D+IV+L+ TLE++Y G  ++V R K V + APGKR+CNCR E+   Q
Sbjct: 120 APRQQDRNIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQ 179

Query: 71  IGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDL 130
           +GPG FQ   E VCD+C NVK   E   + V+IE G++DG E  F  +GEP +DGEPGDL
Sbjct: 180 LGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDL 239

Query: 131 KFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVR 190
           +FRI+   H  F R G++L+T VTV+LV+ALVGFE  I HLD H V IS   IT+P    
Sbjct: 240 RFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRDKITRPGAKL 299

Query: 191 KFGGEGMP-LHFSNKKGDLYITFEVLFPT-TLTEDQKTRIKEVL 232
              GEG+P    +N KG L ITF+V FP   LTE+ K  IK++L
Sbjct: 300 WKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAKEGIKQLL 343
Serves as a co-chaperone for HSPA5. Binds directly to both unfolded proteins that are substrates for ERAD and nascent unfolded peptide chains, but dissociates from the HSPA5-unfolded protein complex before folding is completed. May help recruiting HSPA5 and other chaperones to the substrate. Stimulates HSPA5 ATPase activity.
Rattus norvegicus (taxid: 10116)
>sp|Q99KV1|DJB11_MOUSE DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAJ6|DJB11_PONAB DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1 Back     alignment and function description
>sp|Q9UBS4|DJB11_HUMAN DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1 Back     alignment and function description
>sp|P81999|DJB11_CANFA DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2 Back     alignment and function description
>sp|Q3ZBA6|DJB11_BOVIN DnaJ homolog subfamily B member 11 OS=Bos taurus GN=DNAJB11 PE=2 SV=1 Back     alignment and function description
>sp|Q8MPX3|DNJ20_CAEEL DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=4 SV=2 Back     alignment and function description
>sp|Q626I7|DNJ20_CAEBR DnaJ homolog dnj-20 OS=Caenorhabditis briggsae GN=dnj-20 PE=4 SV=1 Back     alignment and function description
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1 Back     alignment and function description
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
224131018 349 predicted protein [Populus trichocarpa] 0.991 0.661 0.900 1e-122
224064488 345 predicted protein [Populus trichocarpa] 0.991 0.669 0.896 1e-121
225437515 345 PREDICTED: dnaJ homolog subfamily B memb 0.991 0.669 0.874 1e-121
356505618 343 PREDICTED: dnaJ homolog subfamily B memb 0.991 0.673 0.857 1e-117
356572775 343 PREDICTED: dnaJ homolog subfamily B memb 0.991 0.673 0.865 1e-117
255548499 345 Chaperone protein dnaJ, putative [Ricinu 0.927 0.626 0.921 1e-115
357511325 344 DnaJ homolog subfamily B member [Medicag 0.991 0.671 0.853 1e-114
297821166 346 DNAJ heat shock family protein [Arabidop 0.991 0.667 0.813 1e-112
356501879 346 PREDICTED: dnaJ homolog subfamily B memb 0.987 0.664 0.826 1e-112
15228802 346 DNAJ heat shock family protein [Arabidop 0.991 0.667 0.805 1e-112
>gi|224131018|ref|XP_002320981.1| predicted protein [Populus trichocarpa] gi|118486904|gb|ABK95286.1| unknown [Populus trichocarpa] gi|222861754|gb|EEE99296.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/231 (90%), Positives = 219/231 (94%)

Query: 3   VFDSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNC 62
           +F  FFGGG MEE+EKI +GDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNC
Sbjct: 119 IFSQFFGGGSMEEEEKIARGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNC 178

Query: 63  RNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPK 122
           RNEVYHKQIGPGMFQQMTEQVC+QCQNVKYEREGYF+TVDIEKGMQDGQEVVFYEDGEP 
Sbjct: 179 RNEVYHKQIGPGMFQQMTEQVCEQCQNVKYEREGYFLTVDIEKGMQDGQEVVFYEDGEPI 238

Query: 123 IDGEPGDLKFRIRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKG 182
           IDGEPGDLKFRIRTAPHD FRREGN+LHTTVT+TLVQALV FEK IEHLDEHLVDIS+KG
Sbjct: 239 IDGEPGDLKFRIRTAPHDIFRREGNDLHTTVTITLVQALVSFEKNIEHLDEHLVDISSKG 298

Query: 183 ITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVLG 233
           ITKPKEVR+F GEGMPLHFS K GDLY+TFEVLFPT+LTEDQK RIKEVLG
Sbjct: 299 ITKPKEVRRFKGEGMPLHFSTKNGDLYVTFEVLFPTSLTEDQKKRIKEVLG 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064488|ref|XP_002301501.1| predicted protein [Populus trichocarpa] gi|222843227|gb|EEE80774.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225437515|ref|XP_002275221.1| PREDICTED: dnaJ homolog subfamily B member 11 [Vitis vinifera] gi|147769615|emb|CAN72389.1| hypothetical protein VITISV_040417 [Vitis vinifera] gi|297743958|emb|CBI36928.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356505618|ref|XP_003521587.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max] Back     alignment and taxonomy information
>gi|356572775|ref|XP_003554541.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max] Back     alignment and taxonomy information
>gi|255548499|ref|XP_002515306.1| Chaperone protein dnaJ, putative [Ricinus communis] gi|223545786|gb|EEF47290.1| Chaperone protein dnaJ, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357511325|ref|XP_003625951.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|355500966|gb|AES82169.1| DnaJ homolog subfamily B member [Medicago truncatula] gi|388502852|gb|AFK39492.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297821166|ref|XP_002878466.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata] gi|297324304|gb|EFH54725.1| DNAJ heat shock family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356501879|ref|XP_003519751.1| PREDICTED: dnaJ homolog subfamily B member 11-like [Glycine max] Back     alignment and taxonomy information
>gi|15228802|ref|NP_191819.1| DNAJ heat shock family protein [Arabidopsis thaliana] gi|7362740|emb|CAB83110.1| putative protein [Arabidopsis thaliana] gi|20453120|gb|AAM19802.1| AT3g62600/F26K9_30 [Arabidopsis thaliana] gi|21593230|gb|AAM65179.1| unknown [Arabidopsis thaliana] gi|21928031|gb|AAM78044.1| At3g62600/F26K9_30 [Arabidopsis thaliana] gi|332646847|gb|AEE80368.1| DNAJ heat shock family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
TAIR|locus:2081725346 ATERDJ3B [Arabidopsis thaliana 0.982 0.661 0.772 3.9e-99
RGD|1307373358 Dnajb11 "DnaJ (Hsp40) homolog, 0.978 0.636 0.461 1.5e-49
MGI|MGI:1915088358 Dnajb11 "DnaJ (Hsp40) homolog, 0.978 0.636 0.461 2.5e-49
UNIPROTKB|F1NVY5364 DNAJB11 "Uncharacterized prote 0.978 0.626 0.448 3.2e-49
UNIPROTKB|Q9UBS4358 DNAJB11 "DnaJ homolog subfamil 0.978 0.636 0.456 4.1e-49
UNIPROTKB|F1PXX5358 DNAJB11 "DnaJ homolog subfamil 0.978 0.636 0.452 8.5e-49
UNIPROTKB|P81999358 DNAJB11 "DnaJ homolog subfamil 0.978 0.636 0.452 8.5e-49
UNIPROTKB|F1SFJ8358 DNAJB11 "Uncharacterized prote 0.978 0.636 0.452 8.5e-49
UNIPROTKB|Q3ZBA6358 DNAJB11 "DnaJ homolog subfamil 0.978 0.636 0.448 1.8e-48
FB|FBgn0031256354 CG4164 [Drosophila melanogaste 0.965 0.635 0.424 1.8e-46
TAIR|locus:2081725 ATERDJ3B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 177/229 (77%), Positives = 204/229 (89%)

Query:     3 VFDSFFGGGPMEEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNC 62
             +F SFFGGG MEE+EK+VKGDDVIVEL+ATLEDLYMGGS+KVWREKNVIKPAPGKR+CNC
Sbjct:   116 IFSSFFGGGSMEEEEKVVKGDDVIVELEATLEDLYMGGSMKVWREKNVIKPAPGKRKCNC 175

Query:    63 RNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPK 122
             RNEVYH+QIGPGMFQQMTEQVCD+C NVKYEREGYFVTVDIEKGM+DG+EV FYEDGEP 
Sbjct:   176 RNEVYHRQIGPGMFQQMTEQVCDKCPNVKYEREGYFVTVDIEKGMKDGEEVSFYEDGEPI 235

Query:   123 IDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDISTKG 182
             +DG+PGDLKFRIRTAPH RFRR+GN+              GFEK+ +HLD+H VDIS+KG
Sbjct:   236 LDGDPGDLKFRIRTAPHARFRRDGNDLHMNVNITLVEALVGFEKSFKHLDDHEVDISSKG 295

Query:   183 ITKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTTLTEDQKTRIKEV 231
             ITKPKEV+KF GEGMPLH+S KKG+L++TFEVLFP++LT+DQK +IKEV
Sbjct:   296 ITKPKEVKKFKGEGMPLHYSTKKGNLFVTFEVLFPSSLTDDQKKKIKEV 344
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS;RCA
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005788 "endoplasmic reticulum lumen" evidence=IDA
GO:0052033 "pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response" evidence=IMP
GO:0006984 "ER-nucleus signaling pathway" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
GO:0005783 "endoplasmic reticulum" evidence=IDA
RGD|1307373 Dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915088 Dnajb11 "DnaJ (Hsp40) homolog, subfamily B, member 11" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVY5 DNAJB11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBS4 DNAJB11 "DnaJ homolog subfamily B member 11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXX5 DNAJB11 "DnaJ homolog subfamily B member 11" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P81999 DNAJB11 "DnaJ homolog subfamily B member 11" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SFJ8 DNAJB11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBA6 DNAJB11 "DnaJ homolog subfamily B member 11" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0031256 CG4164 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99KV1DJB11_MOUSENo assigned EC number0.50220.94840.6173yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 4e-41
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 1e-34
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 7e-33
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 2e-26
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 7e-24
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 3e-22
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 2e-20
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 1e-18
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 3e-17
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 2e-16
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 5e-16
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 5e-16
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 5e-16
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 6e-16
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 2e-15
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 3e-15
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 5e-13
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 6e-12
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 1e-11
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 6e-11
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 1e-10
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 2e-10
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 2e-10
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 4e-10
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 4e-10
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 6e-10
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 7e-10
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 1e-09
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 9e-09
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 3e-08
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 3e-07
PRK14288369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 5e-07
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 2e-05
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information 
 Score =  137 bits (347), Expect = 4e-41
 Identities = 56/199 (28%), Positives = 83/199 (41%), Gaps = 42/199 (21%)

Query: 23  DDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQ 82
            D+  +L+ TLE+ Y G   ++   + V                                
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVT------------------------------- 29

Query: 83  VCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEP-KIDGEPGDLKFRIRTAPHDR 141
                      RE   +TV I  G+ DGQ +    +G+     G PGDL   IR  PH  
Sbjct: 30  ---------RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPV 80

Query: 142 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHF 201
           FRR+GN+L+  V ++L +AL+G E  +  L    V +     T+P  V +  G+GMP   
Sbjct: 81  FRRDGNDLYCEVPISLTEALLGGEIEVPTLG-GKVKLKIPPGTQPGTVLRLKGKGMPRLR 139

Query: 202 SNKKGDLYITFEVLFPTTL 220
              +GDLY+  +V FP  L
Sbjct: 140 GGGRGDLYVEVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 100.0
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.9
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.79
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 99.43
PRK14282369 chaperone protein DnaJ; Provisional 99.2
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.16
PRK14290365 chaperone protein DnaJ; Provisional 99.13
PRK14294366 chaperone protein DnaJ; Provisional 99.1
PRK14299291 chaperone protein DnaJ; Provisional 99.09
PRK14285365 chaperone protein DnaJ; Provisional 99.06
PRK14284391 chaperone protein DnaJ; Provisional 99.06
PRK14298377 chaperone protein DnaJ; Provisional 99.04
PRK10767371 chaperone protein DnaJ; Provisional 99.03
PRK14287371 chaperone protein DnaJ; Provisional 99.0
PRK14301373 chaperone protein DnaJ; Provisional 98.98
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 98.97
PRK14300372 chaperone protein DnaJ; Provisional 98.96
PRK14279392 chaperone protein DnaJ; Provisional 98.95
PRK14288369 chaperone protein DnaJ; Provisional 98.93
PRK14289386 chaperone protein DnaJ; Provisional 98.9
PRK14291382 chaperone protein DnaJ; Provisional 98.9
PRK10266306 curved DNA-binding protein CbpA; Provisional 98.9
PRK14295389 chaperone protein DnaJ; Provisional 98.89
PRK14276380 chaperone protein DnaJ; Provisional 98.88
PRK14293374 chaperone protein DnaJ; Provisional 98.87
PRK14286372 chaperone protein DnaJ; Provisional 98.87
PRK14280376 chaperone protein DnaJ; Provisional 98.85
PRK14281397 chaperone protein DnaJ; Provisional 98.85
PRK14278378 chaperone protein DnaJ; Provisional 98.82
PRK14297380 chaperone protein DnaJ; Provisional 98.82
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 98.82
PRK14292371 chaperone protein DnaJ; Provisional 98.81
PRK14277386 chaperone protein DnaJ; Provisional 98.74
PRK14283378 chaperone protein DnaJ; Provisional 98.73
PRK14296372 chaperone protein DnaJ; Provisional 98.7
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 98.68
PTZ00037421 DnaJ_C chaperone protein; Provisional 98.67
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 98.61
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 97.6
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 97.39
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 97.34
PLN03165111 chaperone protein dnaJ-related; Provisional 96.0
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 89.07
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 85.37
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-59  Score=410.28  Aligned_cols=231  Identities=28%  Similarity=0.490  Sum_probs=211.1

Q ss_pred             CcccccccCCCCC--CCCCCCCCCCcEEEEEEeehhhHhcCceEEEEEEeeEeeC-CCCC-----------CCCCcccEE
Q 026801            1 MLVFDSFFGGGPM--EEDEKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKP-APGK-----------RRCNCRNEV   66 (233)
Q Consensus         1 ~d~F~~~Fgg~~~--~~~~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~-c~g~-----------~~C~G~G~~   66 (233)
                      +|||++|||||++  ++..++++|.|+.+.++|||+||+.|++++|.+++...|+ |+|+           ++|+|+|.+
T Consensus        92 ~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v  171 (371)
T COG0484          92 GDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQV  171 (371)
T ss_pred             HHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeE
Confidence            3899999986543  2344578999999999999999999999999999999999 9886           789999997


Q ss_pred             EEEEeCCceEEEee------------eccCccCCCceEEEEeEEEEEEecCCCCCCcEEEEcccCCCC-CCCCCccEEEE
Q 026801           67 YHKQIGPGMFQQMT------------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPK-IDGEPGDLKFR  133 (233)
Q Consensus        67 ~~~~~~~g~~~~~~------------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~g~~i~~~g~G~~~-~~~~~GDl~v~  133 (233)
                      .+.+.. |++++.+            +++|++|+|.+++++.++++|+||+|+.+|++|+++|+|++. .++++|||||.
T Consensus       172 ~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~  250 (371)
T COG0484         172 RTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVF  250 (371)
T ss_pred             EEEEee-eEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEE
Confidence            665533 5555444            899999999999999999999999999999999999999994 57788999999


Q ss_pred             EEecCCCceeeeCCceEEEEEECHhhhccCCEEEEEcCCCcEEEEEeCCCCCCCcEEEECCCCcCCCCCCCCccEEEEEE
Q 026801          134 IRTAPHDRFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSNKKGDLYITFE  213 (233)
Q Consensus       134 i~v~~~~~f~r~g~dl~~~~~i~l~~al~G~~~~i~tldG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GdL~v~~~  213 (233)
                      |.+++|+.|.|+|+||+++++|++.+|++|++++|+|+||+ ++|+||+++++|+++||+|+|||...+..+|||||+++
T Consensus       251 i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~  329 (371)
T COG0484         251 VHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVK  329 (371)
T ss_pred             EEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEE
Confidence            99999999999999999999999999999999999999998 99999999999999999999999988777899999999


Q ss_pred             EECCCCCCHHHHHHHHHhhC
Q 026801          214 VLFPTTLTEDQKTRIKEVLG  233 (233)
Q Consensus       214 v~~P~~l~~~~~~~l~~~~~  233 (233)
                      |.+|++|+.+|+++|++|.+
T Consensus       330 v~~P~~ls~~q~~lL~~~~~  349 (371)
T COG0484         330 VETPKNLSDEQKELLEEFAK  349 (371)
T ss_pred             EEcCCCCCHHHHHHHHHHHH
Confidence            99999999999999999863

>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 6e-15
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 7e-15
2qld_A183 Human Hsp40 Hdj1 Length = 183 7e-15
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 7e-14
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 5e-13
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 4e-08
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 9e-08
3lz8_A329 Structure Of A Putative Chaperone Dnaj From Klebsie 2e-04
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 60  CNCRNEVYHKQIGPGMFQQMTEQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDG 119
           C  + ++ HK++ P                     E   +T++++KG ++G ++ F ++G
Sbjct: 20  CTKKMKISHKRLNP--------------DGKSIRNEDKILTIEVKKGWKEGTKITFPKEG 65
Query: 120 EPKIDGEPGDLKFRIRTAPHDRFRREGNNXXXXXXXXXXXXXXGFEKTIEHLDEHLVDIS 179
           +   +  P D+ F ++  PH+ F+R+G++              G    +  LD   + + 
Sbjct: 66  DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVV 125
Query: 180 TKGITKPKEVRKFGGEGMPL-HFSNKKGDLYITFEVLFPTTLTEDQKTRIKEVL 232
            K + +P   RK  GEG+PL     K+GDL I FEV+FP  + +  +T +++VL
Sbjct: 126 FKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 7e-62
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 3e-58
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 3e-53
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 8e-53
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 4e-33
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 3e-20
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 1e-10
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
 Score =  190 bits (486), Expect = 7e-62
 Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 35/209 (16%)

Query: 25  VIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVC 84
           V  +L  +LE++Y G                    C  + ++ HK               
Sbjct: 5   VTHDLRVSLEEIYSG--------------------CTKKMKISHK--------------R 30

Query: 85  DQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRR 144
                     E   +T++++KG ++G ++ F ++G+   +  P D+ F ++  PH+ F+R
Sbjct: 31  LNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKR 90

Query: 145 EGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLH-FSN 203
           +G+++     ++L +AL G    +  LD   + +  K + +P   RK  GEG+PL     
Sbjct: 91  DGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPE 150

Query: 204 KKGDLYITFEVLFPTTLTEDQKTRIKEVL 232
           K+GDL I FEV+FP  + +  +T +++VL
Sbjct: 151 KRGDLIIEFEVIFPERIPQTSRTVLEQVL 179
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.96
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.94
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 99.41
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.33
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.26
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 99.02
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 99.01
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 98.96
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 98.94
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 98.85
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 98.04
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 94.42
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 90.77
3pmq_A 669 Decaheme cytochrome C MTRF; greek KEY, C type cyto 83.49
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
Probab=100.00  E-value=2.4e-57  Score=384.43  Aligned_cols=212  Identities=29%  Similarity=0.549  Sum_probs=185.5

Q ss_pred             CCCCCCCcEEEEEEeehhhHhcCceEEEEEEeeEeeC-CCCC----------CCCCcccEEE-EEEeCCceEEEee----
Q 026801           17 EKIVKGDDVIVELDATLEDLYMGGSLKVWREKNVIKP-APGK----------RRCNCRNEVY-HKQIGPGMFQQMT----   80 (233)
Q Consensus        17 ~~~~~g~di~~~l~isl~e~~~G~~~~i~~~~~~~C~-c~g~----------~~C~G~G~~~-~~~~~~g~~~~~~----   80 (233)
                      +++++|+|+.+.|+|||+|||+|+++++.+++.+.|+ |+|+          +.|+|+|.+. .+++++ ++++.+    
T Consensus         6 ~~~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~   84 (248)
T 1nlt_A            6 RGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGP-MIQRFQTECD   84 (248)
T ss_dssp             --CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSS-EEEEEECSCT
T ss_pred             CCCCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCc-eEEEEEEcCC
Confidence            3457899999999999999999999999999999999 9876          6799999954 556777 665554    


Q ss_pred             -----------eccCccCCCceEEEEeEEEEEEecCCCCCCcEEEEcccCCCCCCCCCccEEEEEEecCCCceeeeCCce
Q 026801           81 -----------EQVCDQCQNVKYEREGYFVTVDIEKGMQDGQEVVFYEDGEPKIDGEPGDLKFRIRTAPHDRFRREGNNL  149 (233)
Q Consensus        81 -----------~~~C~~C~G~g~~~~~~~~~V~Ip~G~~~g~~i~~~g~G~~~~~~~~GDl~v~i~v~~~~~f~r~g~dl  149 (233)
                                 +++|+.|+|++++.+.++++|+|||||++|++|+|+|+|++.+++.+|||||+|+++||+.|+|+|+||
T Consensus        85 ~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL  164 (248)
T 1nlt_A           85 VCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDL  164 (248)
T ss_dssp             TCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEE
T ss_pred             CCCCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEE
Confidence                       789999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             EEEEEECHhhhccCCEEEEEcCCCcEEEEEeCCC--CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCCC--CCHHHH
Q 026801          150 HTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGI--TKPKEVRKFGGEGMPLHFSNKKGDLYITFEVLFPTT--LTEDQK  225 (233)
Q Consensus       150 ~~~~~i~l~~al~G~~~~i~tldG~~l~i~i~~~--~~~g~~~~i~g~G~p~~~~~~~GdL~v~~~v~~P~~--l~~~~~  225 (233)
                      +++++|+|++|++|++++|+||||+.+.|++|++  +++|++++|+|+|||..+++.+|||||+|+|.||++  |+++|+
T Consensus       165 ~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~  244 (248)
T 1nlt_A          165 VYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENL  244 (248)
T ss_dssp             EEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC---------
T ss_pred             EEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHH
Confidence            9999999999999999999999998799999987  999999999999999876555799999999999999  999999


Q ss_pred             HHHH
Q 026801          226 TRIK  229 (233)
Q Consensus       226 ~~l~  229 (233)
                      ++|+
T Consensus       245 ~~l~  248 (248)
T 1nlt_A          245 KKLE  248 (248)
T ss_dssp             ----
T ss_pred             HhhC
Confidence            9875
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 6e-21
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 6e-18
d1nlta174 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei 3e-08
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 4e-07
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.5 bits (201), Expect = 6e-21
 Identities = 25/85 (29%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 142 FRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMP-LH 200
           F+R+G++L  T+ ++  ++L+GF KTI+ +D   + +S     +P +   + G+GMP   
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 201 FSNKKGDLYITFEVLFPTTLTEDQK 225
             +++G+L + ++V +P +L + QK
Sbjct: 62  NPSQRGNLIVKYKVDYPISLNDAQK 86
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.94
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.9
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.82
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.8
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.49
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.26
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.23
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.07
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 98.31
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 98.24
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.6e-27  Score=169.68  Aligned_cols=89  Identities=29%  Similarity=0.626  Sum_probs=84.1

Q ss_pred             ceeeeCCceEEEEEECHhhhccCCEEEEEcCCCcEEEEEeCCCCCCCcEEEECCCCcCCCCCC-CCccEEEEEEEECCCC
Q 026801          141 RFRREGNNLHTTVTVTLVQALVGFEKTIEHLDEHLVDISTKGITKPKEVRKFGGEGMPLHFSN-KKGDLYITFEVLFPTT  219 (233)
Q Consensus       141 ~f~r~g~dl~~~~~i~l~~al~G~~~~i~tldG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~-~~GdL~v~~~v~~P~~  219 (233)
                      .|+|+|+||+++++|+++||++|++++|+|+||+.+.|++|+++++|+.++|+|+|||..+++ .+|||||+|+|.+|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            499999999999999999999999999999999999999999999999999999999987654 4699999999999999


Q ss_pred             CCHHHHHHHH
Q 026801          220 LTEDQKTRIK  229 (233)
Q Consensus       220 l~~~~~~~l~  229 (233)
                      ||++|+++|+
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999874
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure