Citrus Sinensis ID: 026811

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSRT
Secondary Structure (PSIPRED)
cccccccccHHHHHHccccccccccccHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccEEcccccEEEcccccHHHHHHHccccEEEccHHHccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHcccEEEEEEccccccHHHEcHHHcccHHHHHHHHHHHHcccEccccccccccccccHHHHHHHccccccEcEEEcccccEEEEccccHHHHHHHHHHHHEccccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
meaiglkmdfketelclglpgggnnkkdeaaaleltptpkasnkrgfCETAVIDLKLNLqskessvdlnenfknppsnnknhdkdpakpsankaqvvgwppvrsyrKNAMAETAAFVKVCmdgapylrkvdlKTYKSYQELSDALAKMFSSftmgnygsqgmidFMNESKLMDllnssdyvptyedkdgdwmlvgdvpweMFVDSCKRMRIMKgseaiglapramekcksrt
Flexible Loop (DISEMBL)
meaiglkmdfkeTELCLGLPGGGNNKKDEAAALEltptpkasnkrgFCETAVIDLKLNLQSKESSVDLNEnfknppsnnknhdkdpakpsankaqvvgwpPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKgseaiglapramekcksrt
Low Complexity Region (SEG)
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSRT
Disordered region (IsUnstruct)
**************LCLG***************************GFCETAVIDLKL**************************************VVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKG******************
Disordered Region (DISOPRED)
****GLKMDFKETELCLGL******************************************************************************************MAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMG*******************LNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIM********************
Disordered Region (DISEMBL)
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPS*****************QVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAP**********
Disordered Region (DISPRO)
*****LKMDFKETELCLGLPG**********************************************************************NKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEAIGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSRT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q38832	228	Auxin-responsive protein	yes	no	0.913	0.929	0.672	5e-82
Q38825	243	Auxin-responsive protein	no	no	0.935	0.893	0.661	5e-81
P93830	229	Auxin-responsive protein	no	no	0.909	0.921	0.623	5e-75
O24407	236	Auxin-responsive protein	no	no	0.870	0.855	0.600	7e-73
P13089	243	Auxin-induced protein AUX	no	no	0.913	0.872	0.593	4e-71
P0C132	277	Auxin-responsive protein	yes	no	0.935	0.783	0.551	6e-65
Q75GK0	233	Auxin-responsive protein	no	no	0.879	0.875	0.550	5e-60
Q9ZSY8	305	Auxin-responsive protein	no	no	0.965	0.734	0.479	2e-57
Q38827	338	Auxin-responsive protein	no	no	0.965	0.662	0.462	9e-54
Q38826	321	Auxin-responsive protein	no	no	0.931	0.672	0.435	4e-51

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  303 bits (777), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/241 (67%), Positives = 179/241 (74%), Gaps = 29/241 (12%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS-KESSV 66
           M+ KETELCLGLPGG          +E        NKRGF ET  +DLKLNLQS K+  V
Sbjct: 1   MNLKETELCLGLPGG-------TETVESPAKSGVGNKRGFSET--VDLKLNLQSNKQGHV 51

Query: 67  DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE-------------- 112
           DLN    N     K   KDP+KP A KAQVVGWPPVR+YRKN MA               
Sbjct: 52  DLN---TNGAPKEKTFLKDPSKPPA-KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGG 107

Query: 113 -TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKL 171
            T AFVKV MDGAPYLRKVDLK Y SY++LSDALAKMFSSFTMG+YG+QGMIDFMNESK+
Sbjct: 108 GTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKV 167

Query: 172 MDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSR 231
           MDLLNSS+YVP+YEDKDGDWMLVGDVPW MFV+SCKR+RIMKGSEAIGLAPRAMEK K+R
Sbjct: 168 MDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNR 227

Query: 232 T 232
           +
Sbjct: 228 S 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  300 bits (768), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 168/254 (66%), Positives = 186/254 (73%), Gaps = 37/254 (14%)

Query: 4   IGLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS-K 62
           IG  M+ K TELCLGLPGG       A A+E        +KRGF ET  +DL LNLQS K
Sbjct: 2   IGQLMNLKATELCLGLPGG-------AEAVESPAKSAVGSKRGFSET--VDLMLNLQSNK 52

Query: 63  ESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAM--------AETA 114
           E SVDL +N    P   K   KDP+KP A KAQVVGWPPVR+YRKN M        AE A
Sbjct: 53  EGSVDL-KNVSAVP-KEKTTLKDPSKPPA-KAQVVGWPPVRNYRKNMMTQQKTSSGAEEA 109

Query: 115 A---------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGS 159
           +                VKV MDGAPYLRKVDLK YKSYQ+LSDALAKMFSSFTMGNYG+
Sbjct: 110 SSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGA 169

Query: 160 QGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIG 219
           QGMIDFMNESKLM+LLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKR+RIMKGSEA+G
Sbjct: 170 QGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVG 229

Query: 220 LAPRAMEK-CKSRT 232
           LAPRAMEK CK+R+
Sbjct: 230 LAPRAMEKYCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  280 bits (717), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/239 (62%), Positives = 175/239 (73%), Gaps = 28/239 (11%)

Query: 6   LKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESS 65
           ++++ +ETELCLGLPGG             T  P   NKRGF ET  +DLKLNL ++ ++
Sbjct: 5   VELNLRETELCLGLPGGD------------TVAPVTGNKRGFSET--VDLKLNLNNEPAN 50

Query: 66  VDLNENFKNPPSNNKNHD---KDPAKPSANKAQVVGWPPVRSYRKNAMA---------ET 113
            + +        ++K      KDPAKP A KAQVVGWPPVRSYRKN M          E 
Sbjct: 51  KEGSTTHDVVTFDSKEKSACPKDPAKPPA-KAQVVGWPPVRSYRKNVMVSCQKSSGGPEA 109

Query: 114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQ-GMIDFMNESKLM 172
           AAFVKV MDGAPYLRK+DL+ YKSY ELS+AL+ MFSSFTMG +G + GMIDFMNE KLM
Sbjct: 110 AAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLM 169

Query: 173 DLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSR 231
           DL+NS DYVP+YEDKDGDWMLVGDVPW MFVD+CKR+R+MKGS+AIGLAPRAMEKCKSR
Sbjct: 170 DLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  273 bits (698), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 155/258 (60%), Positives = 175/258 (67%), Gaps = 56/258 (21%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKE---- 63
           ++F+ TEL LGLPGG  N   E A        K + KRGF ET  +DLKLNL S      
Sbjct: 2   INFEATELRLGLPGG--NHGGEMAG-------KNNGKRGFSET--VDLKLNLSSTAMDSV 50

Query: 64  SSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMA------------ 111
           S VDL EN K          +   KP A KAQVVGWPPVRS+RKN M+            
Sbjct: 51  SKVDL-ENMK----------EKVVKPPA-KAQVVGWPPVRSFRKNVMSGQKPTTGDATEG 98

Query: 112 -----------------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTM 154
                             T A+VKV MDGAPYLRK+DLK YK+YQ+LS+AL+KMFSSFT+
Sbjct: 99  NDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTI 158

Query: 155 GNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKG 214
           GNYG QGM DFMNESKL+DLLN SDYVPTYEDKDGDWMLVGDVPWEMFVDSCKR+RIMKG
Sbjct: 159 GNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKG 218

Query: 215 SEAIGLAPRAMEKCKSRT 232
           SEAIGLAPRA+EKCK+R+
Sbjct: 219 SEAIGLAPRALEKCKNRS 236

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  267 bits (683), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/256 (59%), Positives = 168/256 (65%), Gaps = 44/256 (17%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCET---------AVIDLKLN 58
           M F+ETEL LGLPG G  ++                KRGF ET           +DL LN
Sbjct: 1   MGFEETELRLGLPGNGGTEE------------VLIRKRGFSETETGHEDESATTVDLMLN 48

Query: 59  LQSKESSV------DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMA- 111
           L SKE++       D  +  K  P        DPAKP A K QVVGWPPVRS+RKN +A 
Sbjct: 49  LSSKEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPA-KTQVVGWPPVRSFRKNMLAV 107

Query: 112 -------------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYG 158
                          A+FVKV MDGAPYLRKVDLK YKSY+ELSD+L KMFSSFT GN  
Sbjct: 108 QKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCE 167

Query: 159 SQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAI 218
           SQGM DFMNESKL DLLNSSDYVPTYEDKDGDWMLVGDVPWEMFV+SCKR+RIMKG EAI
Sbjct: 168 SQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAI 227

Query: 219 --GLAPRAMEKCKSRT 232
             GLAPRAM KCK+R+
Sbjct: 228 GLGLAPRAMAKCKNRS 243

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  247 bits (630), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 155/281 (55%), Positives = 175/281 (62%), Gaps = 64/281 (22%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQ------- 60
           + F+ TEL LGLPGGG +    AAA        +S KRGF ET  IDLKL L+       
Sbjct: 5   LAFEATELRLGLPGGGGDGDAAAAAAR-----SSSGKRGFAET--IDLKLKLEPAAAAVD 57

Query: 61  -----------SKESSVDL----NEN-----------FKNPPSNNK--NHDKDPAKPSAN 92
                       +E  VD+    N++            K  PS +       DP KP A 
Sbjct: 58  DDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKPRAP 117

Query: 93  KAQVVGWPPVRSYRKNAMAETA---------------------AFVKVCMDGAPYLRKVD 131
           KAQVVGWPPVRSYRKN +A  A                     AFVKV MDGAPYLRKVD
Sbjct: 118 KAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVD 177

Query: 132 LKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDW 191
           LK YKSY ELS AL KMFSSFT+GN GS G ++ MNESK+ DLLN S+YVPTYEDKDGDW
Sbjct: 178 LKMYKSYLELSKALEKMFSSFTIGNCGSHG-VNGMNESKIADLLNGSEYVPTYEDKDGDW 236

Query: 192 MLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSRT 232
           MLVGDVPWEMFV+SCKR+RIMKGSEAIGLAPRAMEKCK+R+
Sbjct: 237 MLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  230 bits (587), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 155/249 (62%), Gaps = 45/249 (18%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           + F ETEL LGLPG G     E AA       ++S KRGF ET  IDLKL LQ    +  
Sbjct: 4   LGFDETELRLGLPGAG-----ELAA-------RSSGKRGFAET--IDLKLKLQPAAPAAV 49

Query: 68  LNE---------------------NFKNPPSNNK--NHDKDPAKPSANKAQVVGWPPVRS 104
             E                     + K   S +     + DP KP A KAQVVGWPPVRS
Sbjct: 50  SGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRS 109

Query: 105 YRKNAMAE---TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQG 161
           +RKN +AE    AA VKV MDGAPYLRK+D+  YKSY ELS A   MF+SFT+G  GS  
Sbjct: 110 FRKNVLAEKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQ 169

Query: 162 MIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLA 221
            +   N  KL D L   +YVPTYEDKDGDWMLVGDVPWEMFV+SCKR+RIMKGSEAIGLA
Sbjct: 170 QLKESN--KLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLA 224

Query: 222 PRAMEKCKS 230
           PRA+EKCKS
Sbjct: 225 PRAVEKCKS 233

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  222 bits (565), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/267 (47%), Positives = 159/267 (59%), Gaps = 43/267 (16%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALEL--TPTPKASNKRGFCE---------------T 50
           ++FK TEL LGLPG  + ++ ++  L L  +  P +  KR F +               T
Sbjct: 38  LNFKATELRLGLPGSESPERVDSRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGSTT 97

Query: 51  AVIDLKLNLQSKESSV-DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNA 109
           A  D+      + S V D        P+      K  A   A+KAQVVGWPP+RS+RKN+
Sbjct: 98  ATGDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNS 157

Query: 110 MAETAA-----------------------FVKVCMDGAPYLRKVDLKTYKSYQELSDALA 146
           MA + +                       +VKV M+GAPYLRK+DLKTYKSY ELS AL 
Sbjct: 158 MASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALE 217

Query: 147 KMFSSFTMGNYGSQGMI--DFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVD 204
           KMFS FT+G +GS G    D +NES+L DLL  S+YV TYEDKD DWMLVGDVPWEMF+ 
Sbjct: 218 KMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFIC 277

Query: 205 SCKRMRIMKGSEAIGLAPRAMEKCKSR 231
           SCK++RIMK SEAIGLAPR MEKC+SR
Sbjct: 278 SCKKLRIMKSSEAIGLAPRVMEKCRSR 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  209 bits (533), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 128/277 (46%), Positives = 161/277 (58%), Gaps = 53/277 (19%)

Query: 8   MDFKETELCLGLPGGGN------------NKKDEAAALELTPTP-----------KASNK 44
           +  K TEL LGLPG  +             K DE     L P+             + NK
Sbjct: 61  ISLKATELTLGLPGSQSPARDTELNLLSPAKLDEKPFFPLLPSKDEICSSSQKNNASGNK 120

Query: 45  RGFCET--AVIDLKLNLQSKES----------SVDLNENFKNPPSNNKNHDKDPAKPSAN 92
           RGF +T     + K ++ ++++          SV   +  +N P    +   + + P A 
Sbjct: 121 RGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPAA 180

Query: 93  KAQVVGWPPVRSYRKNAMAET--------------AAFVKVCMDGAPYLRKVDLKTYKSY 138
           KAQ+VGWPPVRSYRKN +A T              A FVKV MDGAPYLRKVDL++Y +Y
Sbjct: 181 KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNY 240

Query: 139 QELSDALAKMFSSFTMGNYGSQGMI--DFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD 196
            ELS AL KMF++FT+G  GS G    D ++E+KL DLLN  DYV TYEDKDGDWMLVGD
Sbjct: 241 GELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGD 300

Query: 197 VPWEMFVDSCKRMRIMKGSEAIGL--APRAMEKCKSR 231
           VPWEMF+D CK+++IMKG +AIGL  APRAMEK K R
Sbjct: 301 VPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  201 bits (511), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/280 (43%), Positives = 163/280 (58%), Gaps = 64/280 (22%)

Query: 8   MDFKETELCLGLPGGGNNKK------------DEAAALELTPTPK------------ASN 43
           ++FK TEL LGLP   + ++            DE     L P+              + N
Sbjct: 47  LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGN 106

Query: 44  KRGFCET--------------AVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKP 89
           KRGF +T                I++ L+ + K+ S  + E   +      N       P
Sbjct: 107 KRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNN------AP 160

Query: 90  SANKAQVVGWPPVRSYRKNAMAETAA---------------FVKVCMDGAPYLRKVDLKT 134
           +A KAQVVGWPP+RSYRKN MA + +               FVKV MDGAPYLRKVDL+T
Sbjct: 161 AA-KAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRT 219

Query: 135 YKSYQELSDALAKMFSSFTMGN---YGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDW 191
           Y SYQ+LS AL KMFS FT+G    +G+QG  + M+E KL DLL+ S++V TYEDKDGDW
Sbjct: 220 YTSYQQLSSALEKMFSCFTLGQCGLHGAQGR-ERMSEIKLKDLLHGSEFVLTYEDKDGDW 278

Query: 192 MLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSR 231
           MLVGDVPWE+F ++C++++IMKGS++IGLAP A+EK K++
Sbjct: 279 MLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
224099883	248	predicted protein [Populus trichocarpa]	0.931	0.870	0.726	4e-93
429326554	248	hypothetical protein [Populus tomentosa]	0.931	0.870	0.718	5e-92
332167937	249	auxin-responsive protein [Gossypium hirs	0.926	0.863	0.728	4e-90
224111068	277	predicted protein [Populus trichocarpa]	0.931	0.779	0.655	7e-90
358248890	239	auxin-induced protein ali50 [Glycine max	0.909	0.882	0.708	3e-89
406368278	231	auxin repressor, partial [Fragaria x ana	0.922	0.926	0.717	1e-87
302398581	244	ARF domain class transcription factor [M	0.948	0.901	0.690	3e-87
20269059	277	aux/IAA protein [Populus tremula x Popul	0.931	0.779	0.641	3e-87
221271520	243	indole-3-acetic acid 14 transcription fa	0.948	0.905	0.681	5e-86
225432892	243	PREDICTED: auxin-responsive protein IAA1	0.823	0.786	0.802	1e-85

>gi|224099883|ref|XP_002311658.1| predicted protein [Populus trichocarpa] gi|118487775|gb|ABK95711.1| unknown [Populus trichocarpa] gi|222851478|gb|EEE89025.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 178/245 (72%), Positives = 195/245 (79%), Gaps = 29/245 (11%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           +++KETELCLGLPG    K       E+    KA+ KRGF ET  +DLKLNLQ+KE  +D
Sbjct: 13  LNYKETELCLGLPGAVGAKN------EVETPNKATGKRGFAET--VDLKLNLQAKEGVMD 64

Query: 68  LNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE---------- 112
           LNEN KN  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN MA+          
Sbjct: 65  LNENIKNITSKDKNHLPAVTIKDPAKPPA-KAQVVGWPPVRSYRKNVMAQKNASEEGEKA 123

Query: 113 -----TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMN 167
                +AAFVKVCMDGAPYLRKVDLK Y+SYQELSDALAKMFSSFTMGNYG+QGMIDFMN
Sbjct: 124 STGGSSAAFVKVCMDGAPYLRKVDLKMYRSYQELSDALAKMFSSFTMGNYGAQGMIDFMN 183

Query: 168 ESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEK 227
           ESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKR+RIMKGSEAIGLAPRAMEK
Sbjct: 184 ESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGSEAIGLAPRAMEK 243

Query: 228 CKSRT 232
           CKSRT
Sbjct: 244 CKSRT 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326554|gb|AFZ78617.1| hypothetical protein [Populus tomentosa]

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 176/245 (71%), Positives = 195/245 (79%), Gaps = 29/245 (11%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           +++KETELCLGLPG    K       E+    KA+ KRGF ET  +DLKLNLQ+K+  +D
Sbjct: 13  LNYKETELCLGLPGAVGVKN------EVETPNKATGKRGFAET--VDLKLNLQAKDGVMD 64

Query: 68  LNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE---------- 112
           LN+N KN  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN MA+          
Sbjct: 65  LNDNIKNITSKDKNHLPAAAIKDPAKPPA-KAQVVGWPPVRSYRKNVMAQKNASEEGEKT 123

Query: 113 -----TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMN 167
                +AAFVKVCMDGAPYLRKVDLK Y+SYQELSDALAKMFSSFTMGNYG+QGMIDFMN
Sbjct: 124 STGGSSAAFVKVCMDGAPYLRKVDLKMYRSYQELSDALAKMFSSFTMGNYGAQGMIDFMN 183

Query: 168 ESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEK 227
           ESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKR+RIMKGSEAIGLAPRAMEK
Sbjct: 184 ESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGSEAIGLAPRAMEK 243

Query: 228 CKSRT 232
           CKSRT
Sbjct: 244 CKSRT 248

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167937|gb|AEE25653.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 177/243 (72%), Positives = 191/243 (78%), Gaps = 28/243 (11%)

Query: 8   MDFKETELCLGLPGG------GNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS 61
           ++FKETELCLGLPGG      GN         E + +PK + KRGF ET  +DLKLNLQS
Sbjct: 17  LNFKETELCLGLPGGIAVVAAGNE-------TESSSSPKTNGKRGFSET--VDLKLNLQS 67

Query: 62  KESSVDLNENFKNPPSNNKNHD-KDPAKPSANKAQVVGWPPVRSYRKNAMAET------- 113
           KES++DLN+N  +  S  K+   KDPAKP A KAQVVGWPPVRSYRKN MA         
Sbjct: 68  KESTMDLNKNLDDNGSKEKSGSAKDPAKPPA-KAQVVGWPPVRSYRKNIMANQKNSSEES 126

Query: 114 ----AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNES 169
               AA VKV MDGAPYLRKVDLK YKSYQELSDALAKMFSSFTMGNYG QGMIDFMNES
Sbjct: 127 GNSGAALVKVSMDGAPYLRKVDLKMYKSYQELSDALAKMFSSFTMGNYGPQGMIDFMNES 186

Query: 170 KLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCK 229
           KLMDLLNSSDYVP+YEDKDGDWMLVGDVPW+MFVDSCKR+RIMKGSEAIGLAPRAMEKCK
Sbjct: 187 KLMDLLNSSDYVPSYEDKDGDWMLVGDVPWQMFVDSCKRLRIMKGSEAIGLAPRAMEKCK 246

Query: 230 SRT 232
           SR 
Sbjct: 247 SRA 249

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111068|ref|XP_002315736.1| predicted protein [Populus trichocarpa] gi|222864776|gb|EEF01907.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (860), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 179/273 (65%), Positives = 195/273 (71%), Gaps = 57/273 (20%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           +++KETELCLGLPG    K       E+    KA+ KRGF ET  +DLKLNLQ+KE  +D
Sbjct: 14  LNYKETELCLGLPGAVGVKN------EVETPNKATGKRGFAET--VDLKLNLQAKEGVMD 65

Query: 68  LNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE---------- 112
           LNEN KN  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN +A+          
Sbjct: 66  LNENIKNIASKDKNHLPADTIKDPAKPPA-KAQVVGWPPVRSYRKNVLAQKNASEEGFRA 124

Query: 113 ---------------------------------TAAFVKVCMDGAPYLRKVDLKTYKSYQ 139
                                            +AAFVKVCMDGAPYLRKVDLK YKSYQ
Sbjct: 125 QVVGWPPLRSYRKNVLTQKNASEEGDKASTGGSSAAFVKVCMDGAPYLRKVDLKMYKSYQ 184

Query: 140 ELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
           ELSDALAKMFSSFTMGNYG+QGMIDFMNESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPW
Sbjct: 185 ELSDALAKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPW 244

Query: 200 EMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSRT 232
           EMFVDSCKR+RIMKGSEAIGLAPRAMEKCKSRT
Sbjct: 245 EMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRT 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248890|ref|NP_001240213.1| auxin-induced protein ali50 [Glycine max] gi|238058427|gb|ACR39367.1| Aux/IAA protein [Glycine max]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 175/247 (70%), Positives = 189/247 (76%), Gaps = 36/247 (14%)

Query: 5   GLKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKES 64
           GL ++ KETELCLGLPGGG+             TP+A+ KRGF ET  +DLKLNLQ+KE 
Sbjct: 10  GLSLNLKETELCLGLPGGGSE----------VETPRATGKRGFSET--VDLKLNLQTKE- 56

Query: 65  SVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMA------------- 111
             DLNEN KN  S  K   KDPAKP A KAQVVGWPPVRSYRKN MA             
Sbjct: 57  --DLNENLKNV-SKEKTLLKDPAKPPA-KAQVVGWPPVRSYRKNMMAVQKVSNEEVAEKT 112

Query: 112 ------ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDF 165
                  + AFVKV MDGAPYLRKVDL  YKSY++LSDALAKMFSSFTMGNYG+QGMIDF
Sbjct: 113 TSSTIANSGAFVKVSMDGAPYLRKVDLTMYKSYKDLSDALAKMFSSFTMGNYGAQGMIDF 172

Query: 166 MNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAM 225
           MNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPWEMFV SCKR+RIMKGSEAIGLAPRAM
Sbjct: 173 MNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAM 232

Query: 226 EKCKSRT 232
           EKCKSR+
Sbjct: 233 EKCKSRS 239

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406368278|gb|AFS44507.1| auxin repressor, partial [Fragaria x ananassa]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 175/244 (71%), Positives = 191/244 (78%), Gaps = 30/244 (12%)

Query: 6   LKMDFKETELCLGLPGGGNNKKDEAAALELTP---TPKASNKRGFCETAVIDLKLNLQSK 62
           + ++FKETELCLGLPGG        AAL   P   TPKA+ KRGF ET  +DLKLNL + 
Sbjct: 1   MTLNFKETELCLGLPGG--------AALTTEPEICTPKATGKRGFSET--VDLKLNLHAN 50

Query: 63  ESSVDLNENFKNPPSNNKNHD--KDPAKPSANKAQVVGWPPVRSYRKNAMA--------- 111
           E    +NE+ KN  S  KN    KDPAKP A KAQVVGWPPVRSYRKN MA         
Sbjct: 51  EGL--MNESVKNVSSREKNLPCIKDPAKPPA-KAQVVGWPPVRSYRKNVMAQKSTGEESS 107

Query: 112 ---ETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNE 168
              E AAFVKVCMDGAPYLRKVDLK YKSY+ELSDAL+KMFSSFT G YG+QGMIDFMNE
Sbjct: 108 TTTEKAAFVKVCMDGAPYLRKVDLKMYKSYKELSDALSKMFSSFTTGYYGTQGMIDFMNE 167

Query: 169 SKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKC 228
           SKLMDLLNS+DYVPTYEDKDGDWMLVGDVPWEMFVDSCKR+RIMKGSEAIGLAP+AMEKC
Sbjct: 168 SKLMDLLNSTDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPKAMEKC 227

Query: 229 KSRT 232
           K+R+
Sbjct: 228 KNRS 231

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398581|gb|ADL36585.1| ARF domain class transcription factor [Malus x domestica]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/255 (69%), Positives = 192/255 (75%), Gaps = 35/255 (13%)

Query: 1   MEAIGLKMDF--KETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLN 58
           M  +G++ D   +ETELCLGLPGGG     E        T K + KRGF ET  IDLKLN
Sbjct: 2   MSMLGVERDLNLRETELCLGLPGGGTTTVAEPE------TAKTTGKRGFSET--IDLKLN 53

Query: 59  LQSKESSVDLNENFKNPPSNNKNH----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE-- 112
           LQSKE   DLN+N KN  S +KN+     KDP+KP A KAQVVGWPPVRSYRKN MA+  
Sbjct: 54  LQSKE---DLNDNVKNIASKDKNNFLSCTKDPSKPPA-KAQVVGWPPVRSYRKNIMAQKN 109

Query: 113 ---------------TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNY 157
                          TAAFVKVCMDGAPYLRKVDLK YKSYQELS+ALAKMFSSFT G Y
Sbjct: 110 TSEEKTKKASGGGGCTAAFVKVCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTTGYY 169

Query: 158 GSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEA 217
           G+QGMIDFMNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPW M VDSCKR+RIMKGSEA
Sbjct: 170 GTQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWGMLVDSCKRLRIMKGSEA 229

Query: 218 IGLAPRAMEKCKSRT 232
           IGLAP+AMEKCK R+
Sbjct: 230 IGLAPKAMEKCKGRS 244

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20269059|emb|CAC84710.1| aux/IAA protein [Populus tremula x Populus tremuloides]

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 175/273 (64%), Positives = 191/273 (69%), Gaps = 57/273 (20%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           +++K TELCLGLPG    K       E+    KA+ KRGF ET  +DLKLNLQ+KE  +D
Sbjct: 14  LNYKATELCLGLPGAVGVKN------EVETPNKATGKRGFAET--VDLKLNLQAKEGVMD 65

Query: 68  LNENFKNPPSNNKNH-----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE---------- 112
           LNEN  N  S +KNH      KDPAKP A KAQVVGWPPVRSYRKN +A+          
Sbjct: 66  LNENINNIASEDKNHLPSATIKDPAKPPA-KAQVVGWPPVRSYRKNVLAQKNASEEGFGA 124

Query: 113 ---------------------------------TAAFVKVCMDGAPYLRKVDLKTYKSYQ 139
                                            +AAFVKVCMDGAPYLRKVDLK YKSYQ
Sbjct: 125 QVEGWPPVRSYRKNVLVQKNASEEGEKASTGGCSAAFVKVCMDGAPYLRKVDLKMYKSYQ 184

Query: 140 ELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPW 199
           ELSDALAKMFSS TMGNYG+QGMIDFMNESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPW
Sbjct: 185 ELSDALAKMFSSLTMGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPW 244

Query: 200 EMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSRT 232
           EMFVDSCKR RIMKGSEA+GLAPRAMEKCKSRT
Sbjct: 245 EMFVDSCKRPRIMKGSEAVGLAPRAMEKCKSRT 277

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|221271520|dbj|BAH15071.1| indole-3-acetic acid 14 transcription factor like [Malus prunifolia]

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 173/254 (68%), Positives = 190/254 (74%), Gaps = 34/254 (13%)

Query: 1   MEAIGLKMDF--KETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLN 58
           M  +G++ D   +E ELCLGLPGGG     E        T K + KRGF ET  IDLKLN
Sbjct: 2   MSMLGVERDLNLREAELCLGLPGGGTTTVAEPE------TAKTTGKRGFSET--IDLKLN 53

Query: 59  LQSKESSVDLNENFKNPPSNNKNH----DKDPAKPSANKAQVVGWPPVRSYRKNAMAE-- 112
           LQSKE   DLN+N KN  S +KN+     KDP+KP A KAQVVGWPPVRSYRKN MA+  
Sbjct: 54  LQSKE---DLNDNVKNIASKDKNNFLSCTKDPSKPPA-KAQVVGWPPVRSYRKNVMAQKN 109

Query: 113 --------------TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYG 158
                         TAAFVKVCMDGAPYLRKVDLK Y+SYQELS+ALAKMFSSFT G YG
Sbjct: 110 TSEEKTKKASAGGCTAAFVKVCMDGAPYLRKVDLKMYRSYQELSNALAKMFSSFTTGYYG 169

Query: 159 SQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAI 218
            QGMIDFMNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPW M VDSCKR+RIMKGSEAI
Sbjct: 170 DQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWGMLVDSCKRLRIMKGSEAI 229

Query: 219 GLAPRAMEKCKSRT 232
           G+AP+AMEKCK R+
Sbjct: 230 GIAPKAMEKCKGRS 243

Source: Malus prunifolia

Species: Malus prunifolia

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432892|ref|XP_002284133.1| PREDICTED: auxin-responsive protein IAA14-like isoform 1 [Vitis vinifera]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 167/208 (80%), Positives = 174/208 (83%), Gaps = 17/208 (8%)

Query: 38  TPKASNKRGFCETAVIDLKLNLQSKESSVDLNENFKNPPS--NNKNHDKDPAKPSANKAQ 95
           T KAS KRGF ET  +DLKLNLQSKES VDLNEN K PP   N     KDPAKP A KAQ
Sbjct: 38  TLKASGKRGFSET--VDLKLNLQSKESVVDLNENVKCPPKEKNLLPCTKDPAKPPA-KAQ 94

Query: 96  VVGWPPVRSYRKNAMAET------------AAFVKVCMDGAPYLRKVDLKTYKSYQELSD 143
           VVGWPPVRS+RKN MA+             AAFVKVCMDGAPYLRKVDLK YKSYQELSD
Sbjct: 95  VVGWPPVRSFRKNIMAQKNSSEEGEKGSSGAAFVKVCMDGAPYLRKVDLKMYKSYQELSD 154

Query: 144 ALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFV 203
           AL KMFSSFTMGNYG+QGMIDFMNESKLMDLLNSS+YVPTYEDKDGDWMLVGDVPWEMFV
Sbjct: 155 ALGKMFSSFTMGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFV 214

Query: 204 DSCKRMRIMKGSEAIGLAPRAMEKCKSR 231
           DSCKR+RIMKGSEAIGLAPRAMEKCK+R
Sbjct: 215 DSCKRLRIMKGSEAIGLAPRAMEKCKNR 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.913	0.929	0.676	4.5e-75
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.909	0.921	0.623	7e-70
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.974	0.930	0.546	5.1e-58
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.538	0.409	0.685	9.3e-58
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.965	0.949	0.533	2.3e-55
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.935	0.931	0.550	5.5e-54
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.698	0.479	0.590	5.4e-53
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.538	0.469	0.637	1.1e-52
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.900	0.813	0.495	1.2e-47
UNIPROTKB|Q5VRD1	199	IAA1 "Auxin-responsive protein	0.556	0.648	0.611	1.4e-46

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 163/241 (67%), Positives = 181/241 (75%)

Query:     8 MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQS-KESSV 66
             M+ KETELCLGLPGG    +  A +          NKRGF ET  +DLKLNLQS K+  V
Sbjct:     1 MNLKETELCLGLPGGTETVESPAKS-------GVGNKRGFSET--VDLKLNLQSNKQGHV 51

Query:    67 DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE-------------- 112
             DLN N    P   K   KDP+KP A KAQVVGWPPVR+YRKN MA               
Sbjct:    52 DLNTN--GAPKE-KTFLKDPSKPPA-KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGG 107

Query:   113 -TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKL 171
              T AFVKV MDGAPYLRKVDLK Y SY++LSDALAKMFSSFTMG+YG+QGMIDFMNESK+
Sbjct:   108 GTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKV 167

Query:   172 MDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSR 231
             MDLLNSS+YVP+YEDKDGDWMLVGDVPW MFV+SCKR+RIMKGSEAIGLAPRAMEK K+R
Sbjct:   168 MDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNR 227

Query:   232 T 232
             +
Sbjct:   228 S 228

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 149/239 (62%), Positives = 175/239 (73%)

Query:     6 LKMDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESS 65
             ++++ +ETELCLGLPGG             T  P   NKRGF ET  +DLKLNL ++ ++
Sbjct:     5 VELNLRETELCLGLPGGD------------TVAPVTGNKRGFSET--VDLKLNLNNEPAN 50

Query:    66 VDLNENFKNPPSNNKNHD---KDPAKPSANKAQVVGWPPVRSYRKNAMA---------ET 113
              + +        ++K      KDPAKP A KAQVVGWPPVRSYRKN M          E 
Sbjct:    51 KEGSTTHDVVTFDSKEKSACPKDPAKPPA-KAQVVGWPPVRSYRKNVMVSCQKSSGGPEA 109

Query:   114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQ-GMIDFMNESKLM 172
             AAFVKV MDGAPYLRK+DL+ YKSY ELS+AL+ MFSSFTMG +G + GMIDFMNE KLM
Sbjct:   110 AAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLM 169

Query:   173 DLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSR 231
             DL+NS DYVP+YEDKDGDWMLVGDVPW MFVD+CKR+R+MKGS+AIGLAPRAMEKCKSR
Sbjct:   170 DLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 134/245 (54%), Positives = 163/245 (66%)

Query:     4 IGLKMDFKETELCLGLPGGGN-----------NKKDEAAALELTPTPKASNKRGFCE--- 49
             IG  M+ K TELCLGLPGG             +K+  +  ++L    + SNK G  +   
Sbjct:     2 IGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQ-SNKEGSVDLKN 60

Query:    50 -TAVIDLKLNLQSKESSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKN 108
              +AV   K  L+         +    PP  N   +    + +++ A+        ++   
Sbjct:    61 VSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGG 120

Query:   109 AMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNE 168
             A    A  VKV MDGAPYLRKVDLK YKSYQ+LSDALAKMFSSFTMGNYG+QGMIDFMNE
Sbjct:   121 AAG--AGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNE 178

Query:   169 SKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEK- 227
             SKLM+LLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKR+RIMKGSEA+GLAPRAMEK 
Sbjct:   179 SKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKY 238

Query:   228 CKSRT 232
             CK+R+
Sbjct:   239 CKNRS 243

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 9.3e-58, Sum P(3) = 9.3e-58
 Identities = 87/127 (68%), Positives = 101/127 (79%)

Query:   107 KNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMI--D 164
             K+   +   +VKV M+GAPYLRK+DLKTYKSY ELS AL KMFS FT+G +GS G    D
Sbjct:   178 KSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRD 237

Query:   165 FMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRA 224
              +NES+L DLL  S+YV TYEDKD DWMLVGDVPWEMF+ SCK++RIMK SEAIGLAPR 
Sbjct:   238 GLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRV 297

Query:   225 MEKCKSR 231
             MEKC+SR
Sbjct:   298 MEKCRSR 304

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 126/236 (53%), Positives = 155/236 (65%)

Query:     8 MDFKETELCLGLPGGGNN-----KKDEAAALELTPTPKAS-NKRGFCETAVIDLKLNLQS 61
             ++F+ TEL LGLPGG +      K +       T   K + +       + +DL+ N++ 
Sbjct:     2 INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLE-NMKE 60

Query:    62 KESSVDLNENFKN-PPSNN-KNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE---TAAF 116
             K             PP  + + +     KP+   A         S    + A    T A+
Sbjct:    61 KVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAY 120

Query:   117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLN 176
             VKV MDGAPYLRK+DLK YK+YQ+LS+AL+KMFSSFT+GNYG QGM DFMNESKL+DLLN
Sbjct:   121 VKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLN 180

Query:   177 SSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKSRT 232
              SDYVPTYEDKDGDWMLVGDVPWEMFVDSCKR+RIMKGSEAIGLAPRA+EKCK+R+
Sbjct:   181 GSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 130/236 (55%), Positives = 152/236 (64%)

Query:     8 MDFKETELCLGLPGGG------NNKKD--EAAALELTPTPKASNKRGFCETAVIDLKLNL 59
             + F ETEL LGLPG G      + K+   E   L+L   P A       E A  D K + 
Sbjct:     4 LGFDETELRLGLPGAGELAARSSGKRGFAETIDLKLKLQPAAPAAVSGEEGAQED-KEDA 62

Query:    60 QSKESSVDLNENFKNPPSNNK--NHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE---TA 114
              +  ++ D   + K   S +     + DP KP A KAQVVGWPPVRS+RKN +AE    A
Sbjct:    63 DAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEKCKAA 122

Query:   115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDL 174
             A VKV MDGAPYLRK+D+  YKSY ELS A   MF+SFT+G  GS   +   N  KL D 
Sbjct:   123 ALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKESN--KLRDD 180

Query:   175 LNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEKCKS 230
             L   +YVPTYEDKDGDWMLVGDVPWEMFV+SCKR+RIMKGSEAIGLAPRA+EKCKS
Sbjct:   181 L---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
 Identities = 108/183 (59%), Positives = 129/183 (70%)

Query:    67 DLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAET------------- 113
             D+ +N     S+  N+   P  P+A KAQ+VGWPPVRSYRKN +A T             
Sbjct:   158 DVPQNIPKGQSSTTNNSSSP--PAA-KAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS 214

Query:   114 -AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMI--DFMNESK 170
              A FVKV MDGAPYLRKVDL++Y +Y ELS AL KMF++FT+G  GS G    D ++E+K
Sbjct:   215 GALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETK 274

Query:   171 LMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLA--PRAMEKC 228
             L DLLN  DYV TYEDKDGDWMLVGDVPWEMF+D CK+++IMKG +AIGLA  PRAMEK 
Sbjct:   275 LKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKS 334

Query:   229 KSR 231
             K R
Sbjct:   335 KMR 337

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 410 (149.4 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
 Identities = 81/127 (63%), Positives = 98/127 (77%)

Query:   107 KNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMI--D 164
             K A A    +VKV MDGAPYLRKVDLK YK+Y+ELS AL KMFS FT+G+  S G    D
Sbjct:   139 KQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRD 198

Query:   165 FMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRA 224
              +++ +LMDL N ++ V TYEDKD DWMLVGDVPW MF DSC+R+RIMKGS+A+GLAPRA
Sbjct:   199 GLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRA 258

Query:   225 MEKCKSR 231
              +K K+R
Sbjct:   259 TDKSKNR 265

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 121/244 (49%), Positives = 147/244 (60%)

Query:     9 DFKETELCLGLPGGGN-NKKDEAAALELTPTPKASNKRGFCETA----VIDLKLNLQSKE 63
             D K TEL LGLPG  + ++   AA L+L P  K + KRGF + A              K 
Sbjct:    27 DLKGTELRLGLPGSHSPDRSPPAATLDLLPAAKGA-KRGFSDEARPLPASAAAAAAAGKG 85

Query:    64 SSVDLNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMA--------ETAA 115
                   E  ++    +K     P  P+A KAQVVGWPP+RSYRKN MA        E A 
Sbjct:    86 KKAAAGEEDEDAEEEDKKVAAAPQAPAA-KAQVVGWPPIRSYRKNTMATNQLKSSKEDAE 144

Query:   116 --------FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMN 167
                     +VKV MDGAPYLRKVDLKTYK+Y++LS AL KMF  FT G  G       ++
Sbjct:   145 AKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDG-------LS 197

Query:   168 ESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRAMEK 227
             ES+        +YV TYEDKDGDWMLVGDVPWEMF +SC+R+RIMKGS+AIGLAPRA++K
Sbjct:   198 ESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDK 252

Query:   228 CKSR 231
              K+R
Sbjct:   253 SKNR 256

GO:0009733 "response to auxin stimulus" evidence=ISS

UNIPROTKB|Q5VRD1 IAA1 "Auxin-responsive protein IAA1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 436 (158.5 bits), Expect = 1.4e-46, Sum P(3) = 1.4e-46
 Identities = 85/139 (61%), Positives = 106/139 (76%)

Query:    89 PSANKAQVVGWPPVRSYRKNAMAETAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALA-K 147
             P A KA+VVGWPPVRS+RKNA+A  A FVKV +DGAPYLRKVDL+ Y  Y +L  AL  K
Sbjct:    70 PPAPKARVVGWPPVRSFRKNALA--AKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDK 127

Query:   148 MFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCK 207
              FS FT+  +         +E KL+D +N ++YVPTYEDKDGDWMLVGDVPW+MFV++C+
Sbjct:   128 FFSHFTIRKFAD-------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQ 180

Query:   208 RMRIMKGSEAIGLAPRAME 226
             R+R+MK SEA+ LAPRA +
Sbjct:   181 RLRLMKSSEAVNLAPRAAQ 199

GO:0009733 "response to auxin stimulus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C132	IAA30_ORYSJ	No assigned EC number	0.5516	0.9353	0.7833	yes	no
Q38832	IAA14_ARATH	No assigned EC number	0.6721	0.9137	0.9298	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	2e-99

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  286 bits (735), Expect = 2e-99
 Identities = 125/219 (57%), Positives = 147/219 (67%), Gaps = 33/219 (15%)

Query: 8   MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSVD 67
           ++ K TEL LGLPGG   + +       + +   SNKRGF E              SS+ 
Sbjct: 1   LNLKATELRLGLPGGSEPESEP------STSSVTSNKRGFSEVTE-------DGISSSLG 47

Query: 68  LNENFKNPPSNNKNHDKDPAKPSANKAQVVGWPPVRSYRKNAMAE--TAAFVKVCMDGAP 125
            +++  +  SN      D AKP A KAQVVGWPPVRSYRKN++ E  + ++VKV MDGAP
Sbjct: 48  EDKSTISVSSNG-----DSAKPPA-KAQVVGWPPVRSYRKNSLREKKSGSYVKVSMDGAP 101

Query: 126 YLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYE 185
           YLRKVDLK YKSY ELS AL KMFS FT+G            ES L+DLLN S+YVPTYE
Sbjct: 102 YLRKVDLKMYKSYDELSSALEKMFSCFTIG------------ESGLLDLLNGSEYVPTYE 149

Query: 186 DKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRA 224
           DKDGDWMLVGDVPWEMFV+SCKR+RIMKGSEAIGLAPR+
Sbjct: 150 DKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.57
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.29
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.11
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.08
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.96
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.59
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.31
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.25
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	96.04
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.71
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.54
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.06
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	91.86

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=1.6e-70  Score=475.89  Aligned_cols=208  Identities=54%  Similarity=0.882  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCCchhhhhhhcCCCCCCCCCCCCchhhhhhhhhccccccccc--ccccCCCCCCCCCCCCCCC
Q 026811            8 MDFKETELCLGLPGGGNNKKDEAAALELTPTPKASNKRGFCETAVIDLKLNLQSKESSV--DLNENFKNPPSNNKNHDKD   85 (232)
Q Consensus         8 lnl~~TELRLGLPG~~~~~~~~~~~~~~~~~~~~~~KRgfset~~~d~k~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   85 (232)
                      ||||+|||||||||+++++..   .........+++||+|+++  ++............  ..................+
T Consensus         1 ln~~~TELrLGLPG~~~~~~~---~~~~~~~~~~~~kR~F~~a--id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDAS---SSSSSKKSSSGNKRGFSEA--IDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSS   75 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcc---cccccccccCcccccchhh--hhhcccccccccccccccCcccccccccccccccc
Confidence            799999999999999875411   1122334568899999998  66543100000000  0000000000000000122


Q ss_pred             CCCCCCCCCCcccCCCCccchhhhccc-----CCceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCC
Q 026811           86 PAKPSANKAQVVGWPPVRSYRKNAMAE-----TAAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQ  160 (232)
Q Consensus        86 ~~~p~~~k~qvVGWPPvrs~Rkn~~~~-----~~~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~  160 (232)
                      ...+|++++|+|||||||+||+|.+..     .++||||+|||+||||||||++|+||++|+.+|++||.+|+|++|+++
T Consensus        76 ~~~~p~~~~~~vgwpp~~s~r~n~~~~~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~  155 (215)
T PF02309_consen   76 SSSPPASKAQVVGWPPVRSFRKNSLSEKQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSH  155 (215)
T ss_dssp             ----------BTTBS----S------------------------------------------------------------
T ss_pred             cCCCCcccccccCCCcccccccccccccccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccc
Confidence            334455789999999999999998863     579999999999999999999999999999999999999999988875


Q ss_pred             CcccccchhhhhhccCCCCeeeEEEcCCCCeEEecCcChhHHhhccceeEEecCccccCCChhh
Q 026811          161 GMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRMRIMKGSEAIGLAPRA  224 (232)
Q Consensus       161 g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGDvPWemFv~s~KRLrImk~sea~gl~~~~  224 (232)
                      +    .++..+.+++++++|+|||||+||||||||||||+|||++|||||||+.+|++||+||+
T Consensus       156 ~----~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  156 G----LNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             c----ccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            4    46677888888899999999999999999999999999999999999999999999986

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.57  E-value=0.00024  Score=52.13  Aligned_cols=68  Identities=24%  Similarity=0.406  Sum_probs=55.3

Q ss_pred             eeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec
Q 026811          116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       116 ~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG  195 (232)
                      -|||...|... |.+.+..--+|++|...+++.|...                        ...+.+.|.|.||||..+-
T Consensus         3 ~vK~~~~~~~~-~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~Y~D~dgD~V~i~   57 (84)
T PF00564_consen    3 RVKVRYGGDIR-RIISLPSDVSFDDLRSKIREKFGLL------------------------DEDFQLKYKDEDGDLVTIS   57 (84)
T ss_dssp             EEEEEETTEEE-EEEEECSTSHHHHHHHHHHHHHTTS------------------------TSSEEEEEEETTSSEEEES
T ss_pred             EEEEEECCeeE-EEEEcCCCCCHHHHHHHHHHHhCCC------------------------CccEEEEeeCCCCCEEEeC
Confidence            48999999843 3588888889999999999999961                        3468999999999999887


Q ss_pred             C-cChhHHhhccce
Q 026811          196 D-VPWEMFVDSCKR  208 (232)
Q Consensus       196 D-vPWemFv~s~KR  208 (232)
                      + .=|.+.++.+++
T Consensus        58 sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   58 SDEDLQEAIEQAKE   71 (84)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            4 458888887753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.29  E-value=0.0016  Score=47.70  Aligned_cols=65  Identities=23%  Similarity=0.397  Sum_probs=51.7

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecC
Q 026811          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD  196 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGD  196 (232)
                      |||.-.|.  -|.+-+..--+|++|...+.+.|...                        ...+.|.|+|.||||..+.+
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~------------------------~~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLD------------------------NQSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCC------------------------CCCeEEEEECCCCCEEEecC
Confidence            78887554  67788888999999999999999851                        23689999999999987654


Q ss_pred             -cChhHHhhccc
Q 026811          197 -VPWEMFVDSCK  207 (232)
Q Consensus       197 -vPWemFv~s~K  207 (232)
                       .=|.+.++.++
T Consensus        58 d~Dl~~a~~~~~   69 (81)
T smart00666       58 DEDLEEAIEEYD   69 (81)
T ss_pred             HHHHHHHHHHHH
Confidence             56777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.11  E-value=0.0021  Score=50.00  Aligned_cols=68  Identities=24%  Similarity=0.262  Sum_probs=52.2

Q ss_pred             eeEEEecCcccceeeccC---CCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeE
Q 026811          116 FVKVCMDGAPYLRKVDLK---TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWM  192 (232)
Q Consensus       116 ~VKV~MdG~p~gRKVDL~---~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwM  192 (232)
                      -|||.-+|.-+==++++.   .--+|++|...+.+.|...                       ...+|++.|.|.||||.
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-----------------------~~~~~~l~Y~Dedgd~V   58 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-----------------------PDADLSLTYTDEDGDVV   58 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-----------------------CCCcEEEEEECCCCCEE
Confidence            489999999433344443   4579999999999999851                       13589999999999999


Q ss_pred             EecCcChhHHhhccce
Q 026811          193 LVGDVPWEMFVDSCKR  208 (232)
Q Consensus       193 LVGDvPWemFv~s~KR  208 (232)
                      .+-..  +.|...+.+
T Consensus        59 ~l~~D--~DL~~a~~~   72 (91)
T cd06398          59 TLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEccH--HHHHHHHHH
Confidence            98776  666666655

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.08  E-value=0.0023  Score=48.80  Aligned_cols=55  Identities=25%  Similarity=0.390  Sum_probs=44.9

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecC
Q 026811          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD  196 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGD  196 (232)
                      |||+..|.  .+.+-|..--+|++|...+.++|..   .                    +.+.|.|-|.|.||||.++--
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~---~--------------------~~~~f~LkY~Ddegd~v~lts   57 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL---D--------------------DMSAFDLKYLDDDEEWVLLTC   57 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC---C--------------------CCCeeEEEEECCCCCeEEeec
Confidence            89999887  5566666667999999999999995   1                    135799999999999998743

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.96  E-value=0.0045  Score=45.02  Aligned_cols=65  Identities=23%  Similarity=0.402  Sum_probs=51.3

Q ss_pred             eEEEecCcccceeeccC-CCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec
Q 026811          117 VKVCMDGAPYLRKVDLK-TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~-~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG  195 (232)
                      |||.-.|.  -|.+=+. .--+|++|...|.+.|...                        ...+.+.|.|.||||..+.
T Consensus         3 vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~y~D~e~d~v~l~   56 (81)
T cd05992           3 VKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD------------------------AVSFKLKYPDEDGDLVTIS   56 (81)
T ss_pred             EEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC------------------------CCcEEEEeeCCCCCEEEeC
Confidence            78888766  3445555 8889999999999999961                        1367999999999999988


Q ss_pred             C-cChhHHhhccc
Q 026811          196 D-VPWEMFVDSCK  207 (232)
Q Consensus       196 D-vPWemFv~s~K  207 (232)
                      + .=|++.++.++
T Consensus        57 sd~Dl~~a~~~~~   69 (81)
T cd05992          57 SDEDLEEAIEEAR   69 (81)
T ss_pred             CHHHHHHHHHHHh
Confidence            7 56777777665

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.59  E-value=0.0088  Score=46.03  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec
Q 026811          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG  195 (232)
                      |||.-.|.-+-=+++-+..-+|++|...+.++|+.                        +  .|.+.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l------------------------~--~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL------------------------N--DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC------------------------C--cceeEEEcCCCCEEEEE
Confidence            78999998766677777788999999999999996                        1  46899999999998873

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.31  E-value=0.025  Score=43.63  Aligned_cols=72  Identities=19%  Similarity=0.383  Sum_probs=48.5

Q ss_pred             eEEEecCcccceeeccCCC-CCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec
Q 026811          117 VKVCMDGAPYLRKVDLKTY-KSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~~~-~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG  195 (232)
                      +|+.-.|. | |++=+..- -+|.+|...+++.|... .                    ....++.+.|.|.|||+.-+.
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~-~--------------------~~~~~flIKYkD~dGDlVTIt   59 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK-L--------------------GSSDDVLIKYKDEDGDLITIF   59 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc-c--------------------CCcccEEEEEECCCCCEEEec
Confidence            67777665 3 55444332 39999999999999951 1                    123478999999999999998


Q ss_pred             Cc---ChhHHhhccceeEE
Q 026811          196 DV---PWEMFVDSCKRMRI  211 (232)
Q Consensus       196 Dv---PWemFv~s~KRLrI  211 (232)
                      +-   -|..=+...+||+|
T Consensus        60 s~~dL~~A~~~~~~~~l~~   78 (81)
T cd06401          60 DSSDLSFAIQCSRILKLTL   78 (81)
T ss_pred             cHHHHHHHHhcCcceEEEE
Confidence            75   33333334445554

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.25  E-value=0.021  Score=43.97  Aligned_cols=72  Identities=19%  Similarity=0.296  Sum_probs=51.6

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec-
Q 026811          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG-  195 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG-  195 (232)
                      ||..-|..=-==.+|.....+|+++++-|+.||..                        .+..|+|-|.|.+||.+-+- 
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l------------------------~~~~f~i~Y~D~~gDLLPInN   58 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI------------------------PNVDFLIGYTDPHGDLLPINN   58 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC------------------------CCCcEEEEEeCCCCCEecccC
Confidence            66666666211245555669999999999999996                        13478999999999999775 


Q ss_pred             CcChhHHhhccce-eEEe
Q 026811          196 DVPWEMFVDSCKR-MRIM  212 (232)
Q Consensus       196 DvPWemFv~s~KR-LrIm  212 (232)
                      |+-+..=++++++ |||.
T Consensus        59 DdNf~kAlssa~plLRl~   76 (80)
T cd06403          59 DDNFLKALSSANPLLRIF   76 (80)
T ss_pred             cHHHHHHHHcCCCceEEE
Confidence            4555555667775 5554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=96.04  E-value=0.024  Score=44.15  Aligned_cols=60  Identities=25%  Similarity=0.433  Sum_probs=45.4

Q ss_pred             ceeEEEecC---ccccee--eccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCC
Q 026811          115 AFVKVCMDG---APYLRK--VDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDG  189 (232)
Q Consensus       115 ~~VKV~MdG---~p~gRK--VDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdG  189 (232)
                      +.||.+..|   .+==|+  ||=....+|++|...+.++|..                       +.+..|.+.|.|.||
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-----------------------l~~~~ftlky~DeeG   57 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-----------------------LRGKNFQLFWKDEEG   57 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-----------------------cCCCcEEEEEECCCC
Confidence            368888877   233344  4446677999999999999974                       124689999999999


Q ss_pred             CeEEecCc
Q 026811          190 DWMLVGDV  197 (232)
Q Consensus       190 DwMLVGDv  197 (232)
                      |..-+...
T Consensus        58 DlvtIssd   65 (87)
T cd06402          58 DLVAFSSD   65 (87)
T ss_pred             CEEeecCH
Confidence            99877654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.71  E-value=0.022  Score=44.22  Aligned_cols=51  Identities=22%  Similarity=0.367  Sum_probs=38.5

Q ss_pred             cccceeeccC--CCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec
Q 026811          124 APYLRKVDLK--TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       124 ~p~gRKVDL~--~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG  195 (232)
                      +|-||.+=++  ...|+.+|..++.+=|+.-.                     .....|.|.|.|.||||.+.-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~---------------------~~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDD---------------------FETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCcc---------------------ccCCcccEEEEcCCCCEEEEe
Confidence            4567765554  37899999999999888510                     013478999999999999874

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.54  E-value=0.043  Score=42.53  Aligned_cols=56  Identities=21%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecC
Q 026811          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD  196 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGD  196 (232)
                      ||++-.|.-+--.+|.  .-+|++|.+.+.+||..                       ..+..|++.|.|.|||---+..
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~-----------------------~~~q~ft~kw~DEEGDp~tiSS   57 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF-----------------------HNDQPFTLKWIDEEGDPCTISS   57 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC-----------------------CCCCcEEEEEECCCCCceeecC
Confidence            7899999866656666  67899999999999995                       1245799999999999877655


Q ss_pred             c
Q 026811          197 V  197 (232)
Q Consensus       197 v  197 (232)
                      .
T Consensus        58 ~   58 (83)
T cd06404          58 Q   58 (83)
T ss_pred             H
Confidence            3

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.06  E-value=0.081  Score=40.97  Aligned_cols=65  Identities=17%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             eEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecC
Q 026811          117 VKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGD  196 (232)
Q Consensus       117 VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGD  196 (232)
                      -||.-+|.  .|++--..-=+|..|.+.|+.+|....                       . .+.+||.|.|||-.-+-|
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~-----------------------~-~~~vtYiDeD~D~ITlss   56 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE-----------------------I-KVGVTYIDNDNDEITLSS   56 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh-----------------------h-HeEEEEEcCCCCEEEecc
Confidence            48888887  899988889999999999999999621                       1 278999999999875544


Q ss_pred             -cChhHHhhccc
Q 026811          197 -VPWEMFVDSCK  207 (232)
Q Consensus       197 -vPWemFv~s~K  207 (232)
                       .=-+.|..-..
T Consensus        57 d~eL~d~~~~~~   68 (82)
T cd06397          57 NKELQDFYRLSH   68 (82)
T ss_pred             hHHHHHHHHhcc
Confidence             34445544333

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=91.86  E-value=0.6  Score=36.38  Aligned_cols=55  Identities=20%  Similarity=0.305  Sum_probs=45.3

Q ss_pred             ceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEe
Q 026811          115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (232)
Q Consensus       115 ~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLV  194 (232)
                      .=|||+-.|.  .|-|-+..--+|++|...+.++|+.                         ...+.+-|.|. ||..-+
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-------------------------~~~~~iKykDE-GD~iti   54 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-------------------------KRRLKIKMKDD-GDMITM   54 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-------------------------CCceEEEEEcC-CCCccc
Confidence            3489998888  6777777777899999999999995                         12678999999 999888


Q ss_pred             cCc
Q 026811          195 GDV  197 (232)
Q Consensus       195 GDv  197 (232)
                      ++-
T Consensus        55 ~sq   57 (86)
T cd06408          55 GDQ   57 (86)
T ss_pred             cCH
Confidence            764

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.01
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.99
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.38
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.18
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	87.84
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	82.5

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.01  E-value=0.014  Score=44.43  Aligned_cols=57  Identities=21%  Similarity=0.225  Sum_probs=44.3

Q ss_pred             ceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEe
Q 026811          115 AFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLV  194 (232)
Q Consensus       115 ~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLV  194 (232)
                      +=|||+-.|.-  |.+.+...-+|++|...|.++|...                       .+..+++.|.|.|||+.-+
T Consensus         7 vkvK~~~~gdi--~~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~iti   61 (89)
T 1vd2_A            7 VRVKAYYRGDI--MITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPCTV   61 (89)
T ss_dssp             EEEEEESSSCE--EEEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCEEC
T ss_pred             EEEEEEeCCeE--EEEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcccc
Confidence            45899999984  4444455679999999999999951                       2457899999999998765


Q ss_pred             cC
Q 026811          195 GD  196 (232)
Q Consensus       195 GD  196 (232)
                      -.
T Consensus        62 sS   63 (89)
T 1vd2_A           62 SS   63 (89)
T ss_dssp             CS
T ss_pred             cC
Confidence            43

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.99  E-value=0.017  Score=43.90  Aligned_cols=70  Identities=19%  Similarity=0.145  Sum_probs=51.0

Q ss_pred             CceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEE
Q 026811          114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML  193 (232)
Q Consensus       114 ~~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwML  193 (232)
                      ..-||..-|+.--==.+|-....+|++|..-|+++|.+                        ...+|++.|.|.|||++-
T Consensus         6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLlp   61 (86)
T 1wmh_B            6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLP   61 (86)
T ss_dssp             EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEE
T ss_pred             EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEee
Confidence            34588888877322245555678999999999999985                        133689999999999998


Q ss_pred             ecCc-ChhHHhhccc
Q 026811          194 VGDV-PWEMFVDSCK  207 (232)
Q Consensus       194 VGDv-PWemFv~s~K  207 (232)
                      +=+. -..+=+.++|
T Consensus        62 InnDdnl~~Al~~a~   76 (86)
T 1wmh_B           62 LTNDDSLHRALASGP   76 (86)
T ss_dssp             CCSHHHHHHHTTSSS
T ss_pred             ecCHHHHHHHHHhCC
Confidence            7655 3344455666

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.38  E-value=0.033  Score=44.42  Aligned_cols=70  Identities=17%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             chhhhcccCCceeEEEecCc----ccceeeccC-----------CCCCHHHHHHHHHHhhccccCCCcCCCCcccccchh
Q 026811          105 YRKNAMAETAAFVKVCMDGA----PYLRKVDLK-----------TYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNES  169 (232)
Q Consensus       105 ~Rkn~~~~~~~~VKV~MdG~----p~gRKVDL~-----------~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~  169 (232)
                      |--|.+....+-||++..|.    .==|++=|.           .-.+|++|...++++|..                  
T Consensus        11 ~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~------------------   72 (117)
T 2ktr_A           11 YEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA------------------   72 (117)
T ss_dssp             ---------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT------------------
T ss_pred             eeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc------------------
Confidence            34444544678899999751    223555543           135999999999999974                  


Q ss_pred             hhhhccCCCCeeeEEEcCCCCeEEecCc
Q 026811          170 KLMDLLNSSDYVPTYEDKDGDWMLVGDV  197 (232)
Q Consensus       170 ~l~d~~~~se~vltYeDkdGDwMLVGDv  197 (232)
                           +.+..|.+.|.|.|||+.-+-..
T Consensus        73 -----L~~~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           73 -----LRPGGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             -----SCSSCEEEEEECTTCCEEEECSH
T ss_pred             -----cCCCcEEEEEECCCCCEEEecCH
Confidence                 12457999999999998877654

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.18  E-value=0.043  Score=42.62  Aligned_cols=61  Identities=18%  Similarity=0.292  Sum_probs=45.3

Q ss_pred             CceeEEEecCc----ccceeeccCC-----------CCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCC
Q 026811          114 AAFVKVCMDGA----PYLRKVDLKT-----------YKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSS  178 (232)
Q Consensus       114 ~~~VKV~MdG~----p~gRKVDL~~-----------~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~s  178 (232)
                      ++-||++..|.    .=-|++=|..           ..+|++|...++++|..                       +.+.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~-----------------------l~~~   61 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA-----------------------LRPG   61 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT-----------------------SCSS
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc-----------------------cCCC
Confidence            35689998762    2346555532           24899999999999985                       1245


Q ss_pred             CeeeEEEcCCCCeEEecCc
Q 026811          179 DYVPTYEDKDGDWMLVGDV  197 (232)
Q Consensus       179 e~vltYeDkdGDwMLVGDv  197 (232)
                      .|.+.|.|.|||+.-+-+.
T Consensus        62 ~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           62 GFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             CEEEEEECTTCCEEEECSH
T ss_pred             cEEEEEECCCCCEEEecCH
Confidence            7999999999999877665

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=87.84  E-value=1.4  Score=34.01  Aligned_cols=75  Identities=16%  Similarity=0.338  Sum_probs=53.5

Q ss_pred             CceeEEEecCc------ccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcC
Q 026811          114 AAFVKVCMDGA------PYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDK  187 (232)
Q Consensus       114 ~~~VKV~MdG~------p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDk  187 (232)
                      +.-|||+-+..      .=.|.|=+..--+|++|...+.+=|..++ +.                + . .....+-|+|.
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~-~~----------------~-i-~~~~klkYkDE   65 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTH-NN----------------N-I-SPITKIKYQDE   65 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHC-SS----------------C-C-CCCCCEEEECS
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCc-cc----------------c-c-cceeEEEEEcC
Confidence            35688887742      11366667788899999999999998631 10                0 0 12457999999


Q ss_pred             CCCeEEecCc-ChhHHhhccc
Q 026811          188 DGDWMLVGDV-PWEMFVDSCK  207 (232)
Q Consensus       188 dGDwMLVGDv-PWemFv~s~K  207 (232)
                      |||+...++. =|+|-+++++
T Consensus        66 dGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           66 DGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             SSCEEEECSHHHHHHHHHHHH
T ss_pred             CCCEEEEcCHHHHHHHHHHHH
Confidence            9999877754 8999888774

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=82.50  E-value=1.8  Score=33.92  Aligned_cols=41  Identities=22%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             ccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecCc
Q 026811          131 DLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDV  197 (232)
Q Consensus       131 DL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGDv  197 (232)
                      ||+.--.|.+|..-..+-|...                          +-+|-|.|.||||.-+=|.
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIrildd   68 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRLLSD   68 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEECCSH
T ss_pred             ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEEcch
Confidence            6788889999999999999852                          3478899999999765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.73
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.46
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	88.23

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0019  Score=47.26  Aligned_cols=64  Identities=9%  Similarity=0.096  Sum_probs=48.8

Q ss_pred             eeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEec
Q 026811          116 FVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       116 ~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVG  195 (232)
                      =|||+..|..+==+|=...-.+|.+|...|...|+.   +                       ++.|.|.|.|+||.++.
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l---~-----------------------~~~lkY~Ddd~e~v~l~   59 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL---N-----------------------TIQIKYLDEENEEVSIN   59 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC---S-----------------------SEEEEEECTTSCEEEEC
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc---c-----------------------cceEEEEcCCCCEEEEe
Confidence            489999888654466666778999999999999985   1                       36799999999998875


Q ss_pred             C-cChhHHhhc
Q 026811          196 D-VPWEMFVDS  205 (232)
Q Consensus       196 D-vPWemFv~s  205 (232)
                      - .=-++.+..
T Consensus        60 ~d~dl~E~~~~   70 (85)
T d2bkfa1          60 SQGEYEEALKM   70 (85)
T ss_dssp             SHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            3 334444443

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.46  E-value=0.008  Score=42.97  Aligned_cols=69  Identities=13%  Similarity=0.122  Sum_probs=49.6

Q ss_pred             CceeEEEecCcccceeeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEE
Q 026811          114 AAFVKVCMDGAPYLRKVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWML  193 (232)
Q Consensus       114 ~~~VKV~MdG~p~gRKVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwML  193 (232)
                      ..=|||+.++.-  |.+=|..--+|.+|...+.+.|+.   +                       .++|-|.|.||||..
T Consensus        12 ~ikVKv~~~~D~--~~~~l~~~it~~dL~~kI~~rf~~---~-----------------------~~~lkY~Dedgd~v~   63 (85)
T d1ip9a_          12 TTKIKFYYKDDI--FALMLKGDTTYKELRSKIAPRIDT---D-----------------------NFKLQTKLFDGSGEE   63 (85)
T ss_dssp             CEEEEECBTTCC--EEEEECSCCCHHHHHHHHHHHHTS---S-----------------------CEEEEECCSSSCCSC
T ss_pred             CEEEEEEECCcE--EEEEeCCCCCHHHHHHHHHHHhCC---C-----------------------ceEEEEEcCCCCEEE
Confidence            345899998884  455555668899999999999974   1                       378999999999976


Q ss_pred             ecC-cChhHHhhccceeE
Q 026811          194 VGD-VPWEMFVDSCKRMR  210 (232)
Q Consensus       194 VGD-vPWemFv~s~KRLr  210 (232)
                      +-+ .=+++-++...||.
T Consensus        64 i~sD~Dl~~ai~~~~kl~   81 (85)
T d1ip9a_          64 IKTDSQVSNIIQAKLKIS   81 (85)
T ss_dssp             CCSHHHHHHHHHTTCCEE
T ss_pred             EeCHHHHHHHHHhcCcEE
Confidence            544 34555555444443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.23  E-value=0.36  Score=34.58  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=45.1

Q ss_pred             eeccCCCCCHHHHHHHHHHhhccccCCCcCCCCcccccchhhhhhccCCCCeeeEEEcCCCCeEEecCc-ChhHHhhccc
Q 026811          129 KVDLKTYKSYQELSDALAKMFSSFTMGNYGSQGMIDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDV-PWEMFVDSCK  207 (232)
Q Consensus       129 KVDL~~~~sY~eL~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~se~vltYeDkdGDwMLVGDv-PWemFv~s~K  207 (232)
                      .+|.....+|++.+.-|+.|-..                        .+-++++.|.|.+||.+-+-.. -+.-=+.+++
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l------------------------~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eeccccccCHHHHHHHHHHHcCC------------------------CCCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            57778889999999999998875                        1347899999999999987644 4444455666


Q ss_pred             e-eEEe
Q 026811          208 R-MRIM  212 (232)
Q Consensus       208 R-LrIm  212 (232)
                      - |||+
T Consensus        73 PlLRi~   78 (82)
T d1wmhb_          73 PPLRLL   78 (82)
T ss_dssp             SCEEEE
T ss_pred             CceeEe
Confidence            3 5553