Citrus Sinensis ID: 026812

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHccccccHHHHccccccEEEEEcccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccHHHHHHHHccccEEEEcccHHHHHHHHHHHccccccccccccccEEEEEccccEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccHHcHHHHHHHHHHccccccccccEEEEEEccccccHHcHHHHHHHHccEcEccccHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
mldrlrlhvypkepltcaklTQYASLKLEtkrrakptlhllhvGRRKEKlrsaeagaaadpkhkessamevsgldsdgkefKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGvlggfgnvnevdIKGSEAFLQMLLSdrfpnarnnqHLVALDCGSGIGRITKNLLIRYFnevdllepvSHFLDAAReslapenhmapdmhkatnffcvPLQVITNIIQYHS
Flexible Loop (DISEMBL)
mldrlrlhvypkepltcakltqyaslkletkrrakptlhllhvgrrkeklrsaeagaaadpkhkessamevsgldsdgkEFKNAEEMWReqigedgeqqekKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS
Low Complexity Region (SEG)
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS
Disordered region (IsUnstruct)
*****RLHVYPKEPLTCAKLTQYASLKLE********LHLLH*************************************************************QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA*************MHKATNFFCVPLQVITNIIQY**
Disordered Region (DISOPRED)
**DRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRR****************************DSDGKEFKNAEEMW***************QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLL***********HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL*******PDMHKATNFFCVPLQVITNI*****
Disordered Region (DISEMBL)
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGR*********************************KEFKNAEEMWREQI***********QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS
Disordered Region (DISPRO)
*LDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRRKEK***********************************EEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDRLRLHVYPKEPLTCAKLTQYASLKLETKRRAKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q5PP70	276	Alpha N-terminal protein	no	no	0.655	0.550	0.702	2e-58
A2XMJ1	307	Alpha N-terminal protein	N/A	no	0.668	0.504	0.502	2e-46
Q10CT5	307	Alpha N-terminal protein	no	no	0.668	0.504	0.497	3e-45
Q55DH6	270	Alpha N-terminal protein	yes	no	0.612	0.525	0.373	1e-21
B1H2P7	224	N-terminal Xaa-Pro-Lys N-	yes	no	0.508	0.526	0.404	1e-20
Q4KL94	224	N-terminal Xaa-Pro-Lys N-	N/A	no	0.508	0.526	0.412	2e-20
Q6NWX7	223	N-terminal Xaa-Pro-Lys N-	yes	no	0.491	0.511	0.422	2e-20
Q9BV86	223	N-terminal Xaa-Pro-Lys N-	yes	no	0.517	0.538	0.395	6e-19
Q4KLE6	223	N-terminal Xaa-Pro-Lys N-	N/A	no	0.504	0.524	0.380	7e-19
Q2T9N3	223	N-terminal Xaa-Pro-Lys N-	yes	no	0.504	0.524	0.404	2e-18

>sp|Q5PP70|NTM1_ARATH Alpha N-terminal protein methyltransferase 1 OS=Arabidopsis thaliana GN=At5g44450 PE=2 SV=1

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 128/158 (81%), Gaps = 6/158 (3%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M++ G+DS+GKEF + +EMWRE+IGE  E   KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1   MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
           +VN+ DI GSE FL+ LL +R  N    NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59  HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118

Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           PV+ FLDAARE+LA       + HKATNFFCVPLQ  T
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFT 153

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 4EC: 4

>sp|A2XMJ1|NTM1_ORYSI Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. indica GN=OsI_13745 PE=3 SV=1

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 122/185 (65%), Gaps = 30/185 (16%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE---------------------------- 100
           M+  G DS+G+EF +A EMW  +IG   +                               
Sbjct: 1   MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEQEAGGGG 60

Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
           K+ +WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF  AR  +HLV
Sbjct: 61  KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L     +  D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178

Query: 221 LQVIT 225
           LQ  T
Sbjct: 179 LQDFT 183

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q10CT5|NTM1_ORYSJ Alpha N-terminal protein methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os03g0780900 PE=2 SV=2

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 119/185 (64%), Gaps = 30/185 (16%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQ------------------------ 104
           M+  G DS+G+EF +A EMW  +IG   +                               
Sbjct: 1   MDSRGFDSEGREFSSATEMWAHEIGAAADAPVSAAVAEPAPAPAAGSNGVAGEEEAGGGG 60

Query: 105 ----WYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
               WY + I+YW+GVEAS +GVLGG+G VN+VD+KGS+AFL+ LL++RF  AR  +HLV
Sbjct: 61  KREEWYSKAIAYWQGVEASTEGVLGGYGCVNDVDVKGSDAFLRPLLAERFGAAR--RHLV 118

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           ALDCGSGIGR+TKN L+R+FNEVDL+EPVSHFL+AA+E+L     +  D HKA NF+CVP
Sbjct: 119 ALDCGSGIGRVTKNFLLRHFNEVDLVEPVSHFLEAAQENLTECMEVGEDTHKAANFYCVP 178

Query: 221 LQVIT 225
           LQ  T
Sbjct: 179 LQDFT 183

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q55DH6|NTM1_DICDI Alpha N-terminal protein methyltransferase 1 OS=Dictyostelium discoideum GN=DDB_G0269658 PE=3 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 16/158 (10%)

Query: 72  SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
           SGLD +G  + N E++W++++ G+D + ++K   WY+    YW+GVEA+VDG+LGG   V
Sbjct: 24  SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80

Query: 131 NEVDIKGSEAFLQMLL--SDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLE 187
           + +D+  S+ F+Q  +  +D  P    N   +ALDCG+GIGR+ K  L+   F  VDL+E
Sbjct: 81  SPIDVVASKVFIQDFIKGTDSRPPINLN---LALDCGAGIGRVAKEFLLPIGFKNVDLVE 137

Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
               FLD A+      +    D ++  N++ V LQ  T
Sbjct: 138 QNKLFLDKAK------SDNFKDDNRVENYYAVGLQDFT 169

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|B1H2P7|NTM1A_XENTR N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Xenopus tropicalis GN=ntmt1 PE=2 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 8/126 (6%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E + Q+Y +   YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ  L     N   N
Sbjct: 4   ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
            +  ALDCG+GIGRITK LL+  F +VD+++    FL  A+  L  E        +  N+
Sbjct: 64  MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEG------SRVGNY 115

Query: 217 FCVPLQ 222
           FC  LQ
Sbjct: 116 FCCGLQ 121

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q4KL94|NT1AA_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-A OS=Xenopus laevis GN=ntmt1-a PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 8/126 (6%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E +TQ+Y +  +YW+ V  +VDG+LGG+G+++ VD+ GS+ FLQ  L     N   N
Sbjct: 4   ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
               ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +  N+
Sbjct: 64  A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEG------KRVGNY 115

Query: 217 FCVPLQ 222
           FC  LQ
Sbjct: 116 FCCGLQ 121

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q6NWX7|NTM1A_DANRE N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Danio rerio GN=ntmt1 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 71/123 (57%), Gaps = 9/123 (7%)

Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
           E +T +Y E   YW+ V  +VDG+LGG+G+++ +DI GS+ FLQ  L +           
Sbjct: 7   EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63

Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
            ALDCG+GIGRITK LL+  F  VDL++    FLD AR  L  E+       +  N+FC 
Sbjct: 64  CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEES------KRVENYFCC 117

Query: 220 PLQ 222
            LQ
Sbjct: 118 GLQ 120

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q9BV86|NTM1A_HUMAN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Homo sapiens GN=NTMT1 PE=1 SV=3

 Score = 94.4 bits (233), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN    
Sbjct: 4   EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGT 62

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
               ALDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +  N+
Sbjct: 63  S--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------KRVRNY 114

Query: 217 FCVPLQVIT 225
           FC  LQ  T
Sbjct: 115 FCCGLQDFT 123

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q4KLE6|NT1AB_XENLA N-terminal Xaa-Pro-Lys N-methyltransferase 1-B OS=Xenopus laevis GN=ntmt1-b PE=2 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 74/126 (58%), Gaps = 9/126 (7%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E +TQ+Y +  +YW+ V A+VDG+LGG+G+++  D+  S+ FLQ  L +    ++  
Sbjct: 4   ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
            +  ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +   +
Sbjct: 61  GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEG------KRVGKY 114

Query: 217 FCVPLQ 222
           FC  LQ
Sbjct: 115 FCCGLQ 120

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

>sp|Q2T9N3|NTM1A_BOVIN N-terminal Xaa-Pro-Lys N-methyltransferase 1 OS=Bos taurus GN=NTMT1 PE=2 SV=3

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 9/126 (7%)

Query: 97  EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
           E  E + Q+Y +  +YW+ V A+VDG+LGG+G+++ +DI  S  FLQ  L +   N    
Sbjct: 4   EVIEDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGT 62

Query: 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
            +  ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  NF
Sbjct: 63  SY--ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEG------KRVRNF 114

Query: 217 FCVPLQ 222
           FC  LQ
Sbjct: 115 FCCGLQ 120

Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif [Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation of exposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro in the Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET. Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
255586233	276	Protein C9orf32, putative [Ricinus commu	0.659	0.554	0.770	1e-64
224115626	276	predicted protein [Populus trichocarpa]	0.659	0.554	0.707	2e-60
297791381	335	hypothetical protein ARALYDRAFT_494541 [	0.672	0.465	0.7	1e-59
356528088	336	PREDICTED: alpha N-terminal protein meth	0.801	0.553	0.591	9e-59
449433531	275	PREDICTED: alpha N-terminal protein meth	0.659	0.556	0.687	6e-58
145358849	334	methyltransferase [Arabidopsis thaliana]	0.668	0.464	0.695	1e-57
356510746	278	PREDICTED: alpha N-terminal protein meth	0.659	0.550	0.685	8e-57
75321280	276	RecName: Full=Alpha N-terminal protein m	0.655	0.550	0.702	9e-57
358348179	348	Methyltransferase-like protein 11A [Medi	0.659	0.439	0.630	3e-52
9758698	252	unnamed protein product [Arabidopsis tha	0.577	0.531	0.728	2e-50

>gi|255586233|ref|XP_002533771.1| Protein C9orf32, putative [Ricinus communis] gi|223526308|gb|EEF28616.1| Protein C9orf32, putative [Ricinus communis]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 133/157 (84%), Gaps = 4/157 (2%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           MEV+G DSDG+EFKNAEEMWREQ G DG    KKTQWYR+G+SYW+GVEASVDGVLGG+G
Sbjct: 1   MEVTGTDSDGREFKNAEEMWREQTG-DGT---KKTQWYRDGVSYWQGVEASVDGVLGGYG 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
            VN+ DIKGSEAFLQ L S+ F +    +HLVALDCGSGIGR+TKNLLIRYFNEVDLLEP
Sbjct: 57  QVNDADIKGSEAFLQTLFSELFVDGGLGRHLVALDCGSGIGRVTKNLLIRYFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           VSHFLDAAR+SL  ENHMA D HKATNFFC PLQ  T
Sbjct: 117 VSHFLDAARDSLINENHMASDTHKATNFFCTPLQEFT 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115626|ref|XP_002317082.1| predicted protein [Populus trichocarpa] gi|222860147|gb|EEE97694.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/157 (70%), Positives = 131/157 (83%), Gaps = 4/157 (2%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           ME +G DSDG+EFKN +EMW E  G+      KKTQWYR+G++YWEGVEASV+GVLGG+G
Sbjct: 1   MEAAGTDSDGREFKNPDEMWLEHTGD----TNKKTQWYRDGVAYWEGVEASVNGVLGGYG 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
           +VN+ D+KGSE FLQ LL++ F +   ++HLVALDCGSGIGRITKNLLIR+FNEVDLLEP
Sbjct: 57  HVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           VSHFLDAARE+L  ENHMA D HKATNF+CVPLQ  T
Sbjct: 117 VSHFLDAARENLVQENHMALDKHKATNFYCVPLQEFT 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791381|ref|XP_002863575.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata] gi|297309410|gb|EFH39834.1| hypothetical protein ARALYDRAFT_494541 [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/160 (70%), Positives = 132/160 (82%), Gaps = 4/160 (2%)

Query: 66  SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
           S +ME+ G+DS+GKEF + +EMWRE+IGE+G++  +KTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 57  SESMEICGVDSEGKEFNSVQEMWREEIGEEGDET-RKTQWYRDGVSYWEGVEASVDGVLG 115

Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDL 185
           G+G+VN+ DI GSE FL+ LL +R  N   NQHLVALDCGSGIGRITKNLLIRYFNEVDL
Sbjct: 116 GYGHVNDADIIGSEVFLKTLLQERLVNVGPNQHLVALDCGSGIGRITKNLLIRYFNEVDL 175

Query: 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           LEPV+ FLDAARE+LA         HKATNFFCVPLQ  T
Sbjct: 176 LEPVAQFLDAARENLAS---AGSKTHKATNFFCVPLQEFT 212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528088|ref|XP_003532637.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max]

 Score =  232 bits (592), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 139/191 (72%), Gaps = 5/191 (2%)

Query: 36  PTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGED 95
           P+  LL    R   L ++   + + P ++++S M+ +GLDSDG+EFK  E+MWREQ G+ 
Sbjct: 27  PSFSLLSTRTRTLGLTASCYSSFSFPSYRKTSCMDAAGLDSDGREFKTPEDMWREQAGD- 85

Query: 96  GEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNA-R 154
                KKTQWYR+G+SYWEGV+A++DGVLGGF NVNE DI  SE FL +L S+RF  A  
Sbjct: 86  ---PSKKTQWYRDGVSYWEGVKANMDGVLGGFANVNEPDITCSEDFLNILFSERFHAADA 142

Query: 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214
            +Q LV LDCGSGIGR+TKNLLIRYFNEVDLLEPVSHFL+ ARE+LA       DMHKA 
Sbjct: 143 RHQPLVVLDCGSGIGRVTKNLLIRYFNEVDLLEPVSHFLETARETLALGCQTNSDMHKAV 202

Query: 215 NFFCVPLQVIT 225
           NF+CVPLQ  T
Sbjct: 203 NFYCVPLQDFT 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433531|ref|XP_004134551.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus] gi|449506765|ref|XP_004162842.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Cucumis sativus]

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 129/157 (82%), Gaps = 4/157 (2%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           ME SG D+DG EFKNAEEMWRE +G       K+T+WYREG+ YW+GVEASVDGVLGG+G
Sbjct: 1   MEGSGADTDGHEFKNAEEMWREHVG----NPTKRTEWYREGVGYWQGVEASVDGVLGGYG 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
           +VN+ DI GSE FL+ +L +RF  A  ++ LVALDCGSGIGR+TKNLLI+YFNEVDLLEP
Sbjct: 57  HVNDADILGSEVFLKSILVERFSFAGKDRPLVALDCGSGIGRVTKNLLIKYFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           VSHFL+AAR +LAPEN+   D+HKATNFFC+PLQ  T
Sbjct: 117 VSHFLEAARGNLAPENNGPSDLHKATNFFCMPLQEFT 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145358849|ref|NP_199258.3| methyltransferase [Arabidopsis thaliana] gi|332007727|gb|AED95110.1| methyltransferase [Arabidopsis thaliana]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/161 (69%), Positives = 131/161 (81%), Gaps = 6/161 (3%)

Query: 66  SSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLG 125
           S++M++ G+DS+GKEF + +EMWRE+IGE  E   KKTQWYR+G+SYWEGVEASVDGVLG
Sbjct: 56  SNSMDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLG 113

Query: 126 GFGNVNEVDIKGSEAFLQMLLSDRF-PNARNNQHLVALDCGSGIGRITKNLLIRYFNEVD 184
           G+G+VN+ DI GSE FL+ LL +R   N   NQHLVALDCGSGIGRITKNLLIRYFNEVD
Sbjct: 114 GYGHVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVD 173

Query: 185 LLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           LLEPV+ FLDAARE+LA       + HKATNFFCVPLQ  T
Sbjct: 174 LLEPVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFT 211

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510746|ref|XP_003524095.1| PREDICTED: alpha N-terminal protein methyltransferase 1-like [Glycine max]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 109/159 (68%), Positives = 125/159 (78%), Gaps = 6/159 (3%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M+  GLDSDG+EF  AE+MWREQ G+      KKTQWYR+G+SYWEGV+A++DGVLGGF 
Sbjct: 1   MDAGGLDSDGREFNTAEDMWREQAGD----PSKKTQWYRDGVSYWEGVKANMDGVLGGFA 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARN--NQHLVALDCGSGIGRITKNLLIRYFNEVDLL 186
           NVNE DI  SE FL +LLS+RFP A +   Q LVALDCGSGIGR+TKNLLIRYFNEVDLL
Sbjct: 57  NVNEPDISCSEDFLNILLSERFPPAADARRQPLVALDCGSGIGRVTKNLLIRYFNEVDLL 116

Query: 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           EPVSHFL+ ARE+LA       DMHKA NF+CVPLQ  T
Sbjct: 117 EPVSHFLETARETLASGCQTNSDMHKAVNFYCVPLQDFT 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75321280|sp|Q5PP70.1|NTM1_ARATH RecName: Full=Alpha N-terminal protein methyltransferase 1; AltName: Full=X-Pro-Lys N-terminal protein methyltransferase 1; Short=NTM1 gi|56121880|gb|AAV74221.1| At5g44450 [Arabidopsis thaliana] gi|57222192|gb|AAW39003.1| At5g44450 [Arabidopsis thaliana]

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 111/158 (70%), Positives = 128/158 (81%), Gaps = 6/158 (3%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M++ G+DS+GKEF + +EMWRE+IGE  E   KKTQWYR+G+SYWEGVEASVDGVLGG+G
Sbjct: 1   MDICGVDSEGKEFNSVQEMWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYG 58

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 187
           +VN+ DI GSE FL+ LL +R  N    NQHLVALDCGSGIGRITKNLLIRYFNEVDLLE
Sbjct: 59  HVNDADIIGSEVFLKTLLQERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLE 118

Query: 188 PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           PV+ FLDAARE+LA       + HKATNFFCVPLQ  T
Sbjct: 119 PVAQFLDAARENLAS---AGSETHKATNFFCVPLQEFT 153

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348179|ref|XP_003638126.1| Methyltransferase-like protein 11A [Medicago truncatula] gi|355504061|gb|AES85264.1| Methyltransferase-like protein 11A [Medicago truncatula]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/157 (63%), Positives = 122/157 (77%), Gaps = 4/157 (2%)

Query: 69  MEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFG 128
           M+  G DS+G+E+K A+EMW+EQ G+      KKT WYR+G+SYWEGV A+VDGVLGG+ 
Sbjct: 1   MDAGGSDSNGREYKTADEMWKEQTGD----PNKKTLWYRQGVSYWEGVNATVDGVLGGYA 56

Query: 129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188
           +VNE DI  S+ FL+++LS+RF      Q LVALDCGSGIGR+TKNLLIR+FNEVDLLEP
Sbjct: 57  DVNEPDITCSDDFLKIILSERFNADAKTQPLVALDCGSGIGRVTKNLLIRHFNEVDLLEP 116

Query: 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
           VSHFL+AARE+L    +   DMHKA NF+CVPLQ  T
Sbjct: 117 VSHFLEAARETLTSGEYTNSDMHKAVNFYCVPLQDFT 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758698|dbj|BAB09152.1| unnamed protein product [Arabidopsis thaliana]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 113/140 (80%), Gaps = 6/140 (4%)

Query: 87  MWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLL 146
           MWRE+IGE  E   KKTQWYR+G+SYWEGVEASVDGVLGG+G+VN+ DI GSE FL+ LL
Sbjct: 1   MWREEIGEGDET--KKTQWYRDGVSYWEGVEASVDGVLGGYGHVNDADIIGSEVFLKTLL 58

Query: 147 SDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH 205
            +R  N    NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV+ FLDAARE+LA    
Sbjct: 59  QERLVNNVGANQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVAQFLDAARENLAS--- 115

Query: 206 MAPDMHKATNFFCVPLQVIT 225
              + HKATNFFCVPLQ  T
Sbjct: 116 AGSETHKATNFFCVPLQEFT 135

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
DICTYBASE|DDB_G0269658	270	DDB_G0269658 "Methyltransferas	0.620	0.533	0.378	1.4e-23
UNIPROTKB|B1H2P7	224	ntmt1 "N-terminal Xaa-Pro-Lys	0.508	0.526	0.404	6.3e-21
UNIPROTKB|Q4KL94	224	ntmt1-a "N-terminal Xaa-Pro-Ly	0.508	0.526	0.412	1e-20
ZFIN|ZDB-GENE-040426-2055	223	ntmt1 "N-terminal Xaa-Pro-Lys	0.491	0.511	0.422	3.5e-20
UNIPROTKB|F1MKD1	223	METTL11A "Uncharacterized prot	0.491	0.511	0.414	1.9e-19
UNIPROTKB|Q9BV86	223	NTMT1 "N-terminal Xaa-Pro-Lys	0.504	0.524	0.396	5.1e-19
UNIPROTKB|Q4KLE6	223	ntmt1-b "N-terminal Xaa-Pro-Ly	0.504	0.524	0.380	5.1e-19
UNIPROTKB|Q2T9N3	223	NTMT1 "N-terminal Xaa-Pro-Lys	0.491	0.511	0.406	1.4e-18
UNIPROTKB|D2H163	223	NTMT1 "N-terminal Xaa-Pro-Lys	0.491	0.511	0.406	1.7e-18
UNIPROTKB|F1RQG3	223	NTMT1 "Uncharacterized protein	0.491	0.511	0.398	2.2e-18

DICTYBASE|DDB_G0269658 DDB_G0269658 "Methyltransferase-like protein 11A" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/156 (37%), Positives = 92/156 (58%)

Query:    72 SGLDSDGKEFKNAEEMWREQI-GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNV 130
             SGLD +G  + N E++W++++ G+D + ++K   WY+    YW+GVEA+VDG+LGG   V
Sbjct:    24 SGLDGEGNTYINIEDLWKKELEGKDNKMEDK---WYKSADEYWKGVEATVDGMLGGLAQV 80

Query:   131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV 189
             + +D+  S+ F+Q  +         N +L ALDCG+GIGR+ K  L+   F  VDL+E  
Sbjct:    81 SPIDVVASKVFIQDFIKGTDSRPPINLNL-ALDCGAGIGRVAKEFLLPIGFKNVDLVEQN 139

Query:   190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT 225
               FLD A+     +N    D ++  N++ V LQ  T
Sbjct:   140 KLFLDKAKS----DNFK--DDNRVENYYAVGLQDFT 169

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|B1H2P7 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 51/126 (40%), Positives = 74/126 (58%)

Query:    97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
             E  E + Q+Y +   YW+ V A+VDG+LGG+G+++ +D+ GS+ FLQ  L     N   N
Sbjct:     4 ELVEDEAQFYCKAQKYWKNVPATVDGMLGGYGHISNIDLNGSKKFLQRFLRQEGSNKTGN 63

Query:   157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
              +  ALDCG+GIGRITK LL+  F +VD+++    FL  A+  L  E        +  N+
Sbjct:    64 MY--ALDCGAGIGRITKRLLLPLFKKVDMVDVTDEFLSKAKSYLGEEGS------RVGNY 115

Query:   217 FCVPLQ 222
             FC  LQ
Sbjct:   116 FCCGLQ 121

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

UNIPROTKB|Q4KL94 ntmt1-a "N-terminal Xaa-Pro-Lys N-methyltransferase 1-A" [Xenopus laevis (taxid:8355)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 52/126 (41%), Positives = 74/126 (58%)

Query:    97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
             E  E +TQ+Y +  +YW+ V  +VDG+LGG+G+++ VD+ GS+ FLQ  L     N   N
Sbjct:     4 ELVEDETQFYGKAQNYWKNVPPTVDGMLGGYGHISNVDLNGSKKFLQRFLRQEGSNKTGN 63

Query:   157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
                 ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +  N+
Sbjct:    64 A--CALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSFLGEEGK------RVGNY 115

Query:   217 FCVPLQ 222
             FC  LQ
Sbjct:   116 FCCGLQ 121

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

ZFIN|ZDB-GENE-040426-2055 ntmt1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Danio rerio (taxid:7955)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 52/123 (42%), Positives = 71/123 (57%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E +T +Y E   YW+ V  +VDG+LGG+G+++ +DI GS+ FLQ  L +           
Sbjct:     7 EDQTSFYSEAEHYWKDVPPTVDGMLGGYGSISSIDINGSKKFLQKFLGEGQGKTGTG--- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VDL++    FLD AR  L  E+       +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFRTVDLVDVTQEFLDKARTYLGEESK------RVENYFCC 117

Query:   220 PLQ 222
              LQ
Sbjct:   118 GLQ 120

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1MKD1 METTL11A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 51/123 (41%), Positives = 72/123 (58%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ V A+VDG+LGG+G+++ +DI  S  FLQ  L +  PN     + 
Sbjct:     7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTSY- 64

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  NFFC 
Sbjct:    65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117

Query:   220 PLQ 222
              LQ
Sbjct:   118 GLQ 120

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=IEA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=IEA

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=IEA

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007051 "spindle organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9BV86 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 50/126 (39%), Positives = 72/126 (57%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN       
Sbjct:     7 EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------RVRNYFCC 117

Query:   220 PLQVIT 225
              LQ  T
Sbjct:   118 GLQDFT 123

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0007051 "spindle organization" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=IDA

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=IDA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q4KLE6 ntmt1-b "N-terminal Xaa-Pro-Lys N-methyltransferase 1-B" [Xenopus laevis (taxid:8355)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/126 (38%), Positives = 74/126 (58%)

Query:    97 EQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNN 156
             E  E +TQ+Y +  +YW+ V A+VDG+LGG+G+++  D+  S+ FLQ  L +    ++  
Sbjct:     4 ELVEDETQFYGKAQNYWKNVPATVDGMLGGYGHISNTDLNSSKKFLQRFLRE---GSQKT 60

Query:   157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216
              +  ALDCG+GIGRITK LL+  F  VD+++    FL+ A+  L  E        +   +
Sbjct:    61 GNTCALDCGAGIGRITKRLLLPLFKTVDMVDVTDEFLNKAKSYLGEEGK------RVGKY 114

Query:   217 FCVPLQ 222
             FC  LQ
Sbjct:   115 FCCGLQ 120

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

UNIPROTKB|Q2T9N3 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 50/123 (40%), Positives = 71/123 (57%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ V A+VDG+LGG+G+++ +DI  S  FLQ  L +   N     + 
Sbjct:     7 EDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREG-QNKTGTSY- 64

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  NFFC 
Sbjct:    65 -ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGK------RVRNFFCC 117

Query:   220 PLQ 222
              LQ
Sbjct:   118 GLQ 120

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

UNIPROTKB|D2H163 NTMT1 "N-terminal Xaa-Pro-Lys N-methyltransferase 1" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 50/123 (40%), Positives = 70/123 (56%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ V  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN       
Sbjct:     7 EDEKQFYLKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREG-PNKTGTS-- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  AR  L  E        +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLIKARTYLGEEGK------RVRNYFCC 117

Query:   220 PLQ 222
              LQ
Sbjct:   118 GLQ 120

GO:0005634 "nucleus" evidence=ISS

GO:0007051 "spindle organization" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0008276 "protein methyltransferase activity" evidence=ISS

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=ISS

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=ISS

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=ISS

UNIPROTKB|F1RQG3 NTMT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 49/123 (39%), Positives = 70/123 (56%)

Query:   100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
             E + Q+Y +  +YW+ V  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN       
Sbjct:     7 EDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PNKTGTS-- 63

Query:   160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
              ALDCG+GIGRITK LL+  F  VD+++    FL  A+  L  E        +  N+FC 
Sbjct:    64 CALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGK------RVRNYFCC 117

Query:   220 PLQ 222
              LQ
Sbjct:   118 GLQ 120

GO:0035573 "N-terminal peptidyl-serine trimethylation" evidence=IEA

GO:0035572 "N-terminal peptidyl-serine dimethylation" evidence=IEA

GO:0018016 "N-terminal peptidyl-proline dimethylation" evidence=IEA

GO:0018012 "N-terminal peptidyl-alanine trimethylation" evidence=IEA

GO:0008276 "protein methyltransferase activity" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007051 "spindle organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam05891	217	pfam05891, Methyltransf_PK, AdoMet dependent proli	2e-55

>gnl|CDD|218798 pfam05891, Methyltransf_PK, AdoMet dependent proline di-methyltransferase

 Score =  176 bits (448), Expect = 2e-55
 Identities = 64/122 (52%), Positives = 86/122 (70%), Gaps = 8/122 (6%)

Query: 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLV 160
            + Q+Y + I+YWEGV A+VDG+LGG+G+V+++D+ GS  FL+ LL +R P     +HLV
Sbjct: 1   DEEQFYSKAIAYWEGVSATVDGMLGGYGHVSDIDVNGSRNFLRRLLRERLPGK--RRHLV 58

Query: 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP 220
           ALDCG+GIGR+TKNLL+  F++VDL+EPV  FL  A+E LA          K  NFFCV 
Sbjct: 59  ALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEGK------KKVGNFFCVG 112

Query: 221 LQ 222
           LQ
Sbjct: 113 LQ 114

This protein is expressed in the tail neuron PVT and in uterine cells in C. elegans [worm-base]. In Saccharomyces cerevisiae this is AdoMet dependent proline di-methyltransferase. This enzyme catalyzes the di-methylation of ribosomal proteins Rpl12 and Rps25 at N-terminal proline residues. The methyltransferases described here specifically recognise the N-terminal X-Pro-Lys sequence motif, and they may account for nearly all previously described eukaryotic protein N-terminal methylation reactions. A number of other yeast and human proteins also share the recognition motif and may be similarly modified. As with other methyltransferases, this family carries the characteristic GxGxG motif. Length = 217

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	100.0
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.73
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.83
PRK11207	197	tellurite resistance protein TehB; Provisional	98.58
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.54
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.49
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.44
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.41
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.39
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.38
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.36
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.35
PRK00811	283	spermidine synthase; Provisional	98.34
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.32
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.32
PLN02336	475	phosphoethanolamine N-methyltransferase	98.3
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.29
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.25
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.25
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.25
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.21
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.2
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.2
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.18
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.18
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.15
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.14
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.14
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.09
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.09
PRK12335	287	tellurite resistance protein TehB; Provisional	98.08
PRK05785	226	hypothetical protein; Provisional	98.05
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.04
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.04
PLN02336	475	phosphoethanolamine N-methyltransferase	98.0
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.99
PLN02244	340	tocopherol O-methyltransferase	97.99
PRK06202	232	hypothetical protein; Provisional	97.98
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.98
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.98
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.98
COG4123	248	Predicted O-methyltransferase [General function pr	97.98
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.97
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	97.95
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.95
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.94
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.93
PLN02233	261	ubiquinone biosynthesis methyltransferase	97.93
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.92
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.91
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.91
PLN02366	308	spermidine synthase	97.91
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.9
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.9
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.88
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.88
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.88
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.87
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.87
PRK14967	223	putative methyltransferase; Provisional	97.83
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.82
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.82
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.81
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.8
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.8
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.77
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.77
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.77
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.76
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.75
PHA03411	279	putative methyltransferase; Provisional	97.75
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.72
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.72
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.7
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.7
PRK14968	188	putative methyltransferase; Provisional	97.69
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.69
PHA03412	241	putative methyltransferase; Provisional	97.69
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.68
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.68
PRK07402	196	precorrin-6B methylase; Provisional	97.68
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.68
PRK03612	521	spermidine synthase; Provisional	97.67
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.66
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.66
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.65
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.64
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.62
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.6
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.58
PRK08317	241	hypothetical protein; Provisional	97.56
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.56
PLN02490	340	MPBQ/MSBQ methyltransferase	97.53
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.52
PRK04457	262	spermidine synthase; Provisional	97.52
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.52
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.51
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.51
TIGR03438	301	probable methyltransferase. This model represents	97.51
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.48
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.48
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.47
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.43
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.43
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.42
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.41
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.4
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.35
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.35
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.32
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.3
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.3
PRK01581	374	speE spermidine synthase; Validated	97.27
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.26
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.26
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.24
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.2
COG2890	280	HemK Methylase of polypeptide chain release factor	97.19
PRK04266	226	fibrillarin; Provisional	97.18
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.16
KOG4300	252	consensus Predicted methyltransferase [General fun	97.14
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.11
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.11
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.1
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.1
PHA01634	156	hypothetical protein	97.09
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.08
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.07
PLN03075	296	nicotianamine synthase; Provisional	97.07
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.03
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.02
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.02
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.96
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.96
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.94
PLN02823	336	spermine synthase	96.9
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.81
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.77
KOG3010	261	consensus Methyltransferase [General function pred	96.74
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.74
PRK06922	677	hypothetical protein; Provisional	96.73
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.6
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.54
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.51
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.51
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.5
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.49
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.31
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.29
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	96.26
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.25
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	96.23
TIGR00438	188	rrmJ cell division protein FtsJ.	96.2
PRK04148	134	hypothetical protein; Provisional	96.1
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	96.01
PLN02672	1082	methionine S-methyltransferase	95.98
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	95.94
PLN02476	278	O-methyltransferase	95.9
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.76
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	95.71
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.66
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.64
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.56
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	95.55
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	95.46
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.38
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.09
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.07
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.05
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.0
COG4122	219	Predicted O-methyltransferase [General function pr	94.97
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	94.93
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	94.92
PTZ00146	293	fibrillarin; Provisional	94.85
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	94.72
PLN02589	247	caffeoyl-CoA O-methyltransferase	94.51
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.5
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	94.47
PF13679	141	Methyltransf_32: Methyltransferase domain	94.38
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	94.13
KOG2904	328	consensus Predicted methyltransferase [General fun	94.0
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	93.88
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	93.85
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	93.75
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	93.64
COG2265	432	TrmA SAM-dependent methyltransferases related to t	93.59
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	93.42
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	93.25
KOG2940	325	consensus Predicted methyltransferase [General fun	92.96
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	92.47
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	91.74
PRK00536	262	speE spermidine synthase; Provisional	91.34
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	91.21
PRK10742	250	putative methyltransferase; Provisional	89.68
KOG2899	288	consensus Predicted methyltransferase [General fun	89.64
KOG1501	636	consensus Arginine N-methyltransferase [General fu	89.6
COG0742	187	N6-adenine-specific methylase [DNA replication, re	89.1
COG1565	370	Uncharacterized conserved protein [Function unknow	88.3
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	88.23
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	87.5
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	86.09
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	86.09
KOG1271	227	consensus Methyltransferases [General function pre	85.41
COG4076	252	Predicted RNA methylase [General function predicti	84.49
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	84.25
COG2384	226	Predicted SAM-dependent methyltransferase [General	83.99
COG2520	341	Predicted methyltransferase [General function pred	82.89
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	82.4
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	82.22
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	82.11
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	81.31
KOG2361	264	consensus Predicted methyltransferase [General fun	80.62

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=100.00  E-value=6.9e-43  Score=306.66  Aligned_cols=122  Identities=48%  Similarity=0.888  Sum_probs=96.5

Q ss_pred             hhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC
Q 026812          102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN  181 (232)
Q Consensus       102 ~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~  181 (232)
                      +..||.+|.+||++++||+|||||||++||++||++|+.||++|.....+  ......+||||||||||||++||+++|+
T Consensus         2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~   79 (218)
T PF05891_consen    2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD   79 (218)
T ss_dssp             HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred             cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence            46899999999999999999999999999999999999999999875322  2346789999999999999999999999


Q ss_pred             eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       182 ~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      +||+|||+++|+++|+++++.      +..+++++||+|||+|+|+. +||
T Consensus        80 ~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~f~P~~~~YD  124 (218)
T PF05891_consen   80 EVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQDFTPEEGKYD  124 (218)
T ss_dssp             EEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG----TT-EE
T ss_pred             EeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhhccCCCCcEe
Confidence            999999999999999999855      24789999999999999985 998

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.73  E-value=3.3e-18  Score=159.12  Aligned_cols=118  Identities=29%  Similarity=0.337  Sum_probs=100.2

Q ss_pred             hhhhhhhhhhhhcccCCccchhc-cccCCCcccc---cchhhHHHHHHHHhcCCCCC--cCCCcceeeeccCCccccchH
Q 026812          100 EKKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITK  173 (232)
Q Consensus       100 ~~~~~~Y~~a~~YWe~veaTvdG-MLGGf~~vs~---~Di~gS~~FL~~L~~~~~~~--~~~~~~~rALDcGAGIGRVTk  173 (232)
                      .+.-++|.+++.||.++.++++| |||||.+.+.   .|+.+|.+|+..+...+..+  .+-.....++|||+|||||++
T Consensus       114 ~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k  193 (342)
T KOG3178|consen  114 MNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLK  193 (342)
T ss_pred             hhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHH
Confidence            34457899999999999999999 8999999877   99999999999987632111  112346799999999999999


Q ss_pred             HHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812          174 NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII  228 (232)
Q Consensus       174 ~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~  228 (232)
                      ++|+ .|.+||+|+++..|+.++..+++         .+|+++++.+||+ +|+.
T Consensus       194 ~ll~-~fp~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~-~P~~  237 (342)
T KOG3178|consen  194 NLLS-KYPHIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQD-TPKG  237 (342)
T ss_pred             HHHH-hCCCCceeecCHHHHHhhhhhhc---------CCcceeccccccc-CCCc
Confidence            9888 89999999999999999999874         2388999999999 9875

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.83  E-value=5.9e-09  Score=78.81  Aligned_cols=68  Identities=22%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             eeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC-CCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL-QdF~Pe~~YD  231 (232)
                      .++||+|||+|+++..++.. ...+|+.||+++.|++.|++++....    ...+| ++++..+ .++....+||
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i-~~~~~d~~~~~~~~~~~D   72 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG----LSDRI-TFVQGDAEFDPDFLEPFD   72 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT----TTTTE-EEEESCCHGGTTTSSCEE
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCe-EEEECccccCcccCCCCC
Confidence            58999999999999986662 45799999999999999999983211    13566 8999999 5555555776

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.58  E-value=1.2e-07  Score=80.68  Aligned_cols=67  Identities=22%  Similarity=0.115  Sum_probs=52.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|+.+..| ++...+|++||+++.+++.|+++++....     ..+ ++.+..+.++.++..||
T Consensus        31 ~~~vLDiGcG~G~~a~~L-a~~g~~V~gvD~S~~~i~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~fD   97 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYL-AANGFDVTAWDKNPMSIANLERIKAAENL-----DNL-HTAVVDLNNLTFDGEYD   97 (197)
T ss_pred             CCcEEEECCCCCHHHHHH-HHCCCEEEEEeCCHHHHHHHHHHHHHcCC-----Ccc-eEEecChhhCCcCCCcC
Confidence            358999999999999875 45556999999999999999987755221     123 67788888877666787

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.54  E-value=2e-07  Score=81.23  Aligned_cols=76  Identities=17%  Similarity=0.218  Sum_probs=57.3

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      .++.+|..+..        .+..++||+|||.|++|..|.... ..+|..||+++.|++.|++++.          .+ +
T Consensus        19 ~~~~ll~~~~~--------~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----------~~-~   79 (258)
T PRK01683         19 PARDLLARVPL--------ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----------DC-Q   79 (258)
T ss_pred             HHHHHHhhCCC--------cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----------CC-e
Confidence            34566655433        234689999999999998755443 3699999999999999998752          22 6


Q ss_pred             EEEecCCCccCCCCCC
Q 026812          216 FFCVPLQVITNIIQYH  231 (232)
Q Consensus       216 ~~~vgLQdF~Pe~~YD  231 (232)
                      +.+..+++|.|...||
T Consensus        80 ~~~~d~~~~~~~~~fD   95 (258)
T PRK01683         80 FVEADIASWQPPQALD   95 (258)
T ss_pred             EEECchhccCCCCCcc
Confidence            7888888887777777

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.49  E-value=1.5e-07  Score=82.60  Aligned_cols=67  Identities=21%  Similarity=0.225  Sum_probs=52.3

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .+..+|||+|||+|..|.. |+++++++.++|.++.-++.|++.++..+.       | ++.+..+.+|.|+.+||
T Consensus        42 ~ry~~alEvGCs~G~lT~~-LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~-------V-~~~~~dvp~~~P~~~FD  108 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTER-LAPRCDRLLAVDISPRALARARERLAGLPH-------V-EWIQADVPEFWPEGRFD  108 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHH-HGGGEEEEEEEES-HHHHHHHHHHTTT-SS-------E-EEEES-TTT---SS-EE
T ss_pred             cccceeEecCCCccHHHHH-HHHhhCceEEEeCCHHHHHHHHHhcCCCCC-------e-EEEECcCCCCCCCCCee
Confidence            4567999999999999987 899999999999999999999999977433       3 99999999999999998

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.44  E-value=4e-07  Score=77.46  Aligned_cols=65  Identities=18%  Similarity=0.084  Sum_probs=48.4

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|+.+.. |++...+|++||+++.|++.+++......      -.+ ++.+..++++.++..||
T Consensus        32 ~~vLDiGcG~G~~a~~-la~~g~~V~~iD~s~~~l~~a~~~~~~~~------~~v-~~~~~d~~~~~~~~~fD   96 (195)
T TIGR00477        32 CKTLDLGCGQGRNSLY-LSLAGYDVRAWDHNPASIASVLDMKAREN------LPL-RTDAYDINAAALNEDYD   96 (195)
T ss_pred             CcEEEeCCCCCHHHHH-HHHCCCeEEEEECCHHHHHHHHHHHHHhC------CCc-eeEeccchhccccCCCC
Confidence            5899999999999987 45555699999999999999988764311      112 55666666665555677

Part of a tellurite-reducing operon tehA and tehB

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.41  E-value=1.4e-06  Score=80.86  Aligned_cols=68  Identities=18%  Similarity=0.276  Sum_probs=51.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..+|||+|||.|+++.. |++...+|..||+++++++.|++.....+.    ..+| ++.+..++++... .+||
T Consensus       132 g~~ILDIGCG~G~~s~~-La~~g~~V~GID~s~~~i~~Ar~~~~~~~~----~~~i-~~~~~dae~l~~~~~~FD  200 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEP-LARMGATVTGVDAVDKNVKIARLHADMDPV----TSTI-EYLCTTAEKLADEGRKFD  200 (322)
T ss_pred             CCEEEEeeCCCCHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHhcCc----ccce-eEEecCHHHhhhccCCCC
Confidence            45899999999999986 566667999999999999999987533211    1234 7888888877533 4787

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.39  E-value=8.3e-07  Score=76.20  Aligned_cols=92  Identities=16%  Similarity=0.103  Sum_probs=65.9

Q ss_pred             ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCC
Q 026812          130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAP  208 (232)
Q Consensus       130 vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~  208 (232)
                      +...+-...+.|+..+......+    +..++||+|||+|.++..+.... ..+|+.||+++.|++.|+++++....   
T Consensus        22 ~~~~~~~~~~~~~d~l~l~~~l~----~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l---   94 (187)
T PRK00107         22 IRDPEELWERHILDSLAIAPYLP----GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL---   94 (187)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhcC----CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC---
Confidence            44444455677777765422211    24689999999999998654322 46999999999999999998766321   


Q ss_pred             CCCCcceEEEecCCCccCCCCCC
Q 026812          209 DMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       209 ~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                        ..+ ++.+..++++.+...||
T Consensus        95 --~~i-~~~~~d~~~~~~~~~fD  114 (187)
T PRK00107         95 --KNV-TVVHGRAEEFGQEEKFD  114 (187)
T ss_pred             --CCE-EEEeccHhhCCCCCCcc
Confidence              223 88999999988755887

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.38  E-value=1.3e-06  Score=77.88  Aligned_cols=90  Identities=18%  Similarity=0.186  Sum_probs=63.0

Q ss_pred             CCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCC
Q 026812          126 GFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH  205 (232)
Q Consensus       126 Gf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~  205 (232)
                      |.+.+|.--+..+..+|..+..        .+..++||+|||+|..+..+......+|+.||+++.+++.|++.+..   
T Consensus        29 g~~~~~~gg~~~~~~~l~~l~l--------~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---   97 (263)
T PTZ00098         29 GEDYISSGGIEATTKILSDIEL--------NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---   97 (263)
T ss_pred             CCCCCCCCchHHHHHHHHhCCC--------CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---
Confidence            3445666666678888887644        23468999999999999875433335999999999999999997643   


Q ss_pred             CCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          206 MAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       206 ~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                          ..++ .+.+..+.+.. |+..||
T Consensus        98 ----~~~i-~~~~~D~~~~~~~~~~FD  119 (263)
T PTZ00098         98 ----KNKI-EFEANDILKKDFPENTFD  119 (263)
T ss_pred             ----CCce-EEEECCcccCCCCCCCeE
Confidence                1233 66666665433 334666

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.36  E-value=7.4e-07  Score=71.99  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=51.9

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      +..++||+|||+|+++..|+..+  ..+|..||.++.|++.|++.+.....     ..+ +|++..++++..  +.+||
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~-----~ni-~~~~~d~~~l~~~~~~~~D   75 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL-----DNI-EFIQGDIEDLPQELEEKFD   75 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS-----TTE-EEEESBTTCGCGCSSTTEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc-----ccc-ceEEeehhccccccCCCee
Confidence            34689999999999998865343  36899999999999999997644221     233 899999999652  25676

...

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.35  E-value=1.2e-06  Score=72.49  Aligned_cols=65  Identities=22%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      ..++||+|||.|.+|..++.. ..+|++||.++.|++.+++++...       .++ ++++..+.++.+.. .||
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~-------~~v-~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA-------DNL-TVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC-------CCE-EEEECchhcCCccccCCC
Confidence            358999999999999986655 789999999999999999988541       344 68888888876543 355

>PRK00811 spermidine synthase; Provisional

Probab=98.34  E-value=6.5e-07  Score=80.92  Aligned_cols=103  Identities=15%  Similarity=0.060  Sum_probs=68.2

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|..+.+..|-..-...|..+....     .....+||+||||.|.++..+|.+ ...+||+||.++.+++.|++++.
T Consensus        47 ~lDg~~q~~~~de~~Y~e~l~h~~~~~-----~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~  121 (283)
T PRK00811         47 ALDGCVMTTERDEFIYHEMMTHVPLFA-----HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLP  121 (283)
T ss_pred             EECCeeeecCcchhhHHHHhhhHHHhh-----CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhH
Confidence            566766666666433344555443211     123468999999999999997765 36899999999999999999885


Q ss_pred             CCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          202 PENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      .......+..++ ++++....+|.+  ..+||
T Consensus       122 ~~~~~~~~d~rv-~v~~~Da~~~l~~~~~~yD  152 (283)
T PRK00811        122 EIAGGAYDDPRV-ELVIGDGIKFVAETENSFD  152 (283)
T ss_pred             HhccccccCCce-EEEECchHHHHhhCCCccc
Confidence            321100123565 677776666653  34777

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.32  E-value=3.3e-07  Score=69.27  Aligned_cols=63  Identities=24%  Similarity=0.392  Sum_probs=47.1

Q ss_pred             eeccCCccccchHHHHhhcc-----CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          161 ALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       161 ALDcGAGIGRVTk~lLl~~f-----~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      |||+|||.||++.. |.+.|     .++..||.++.|++.++++.....      .++ ++++..++++.+.. +||
T Consensus         1 ILDlgcG~G~~~~~-l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~------~~~-~~~~~D~~~l~~~~~~~D   69 (101)
T PF13649_consen    1 ILDLGCGTGRVTRA-LARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG------PKV-RFVQADARDLPFSDGKFD   69 (101)
T ss_dssp             -EEET-TTSHHHHH-HHHHS-----SEEEEEES-HHHHHHHHHHSHHTT------TTS-EEEESCTTCHHHHSSSEE
T ss_pred             CEEeecCCcHHHHH-HHHHhhhcccceEEEEECCHHHHHHHHHhchhcC------Cce-EEEECCHhHCcccCCCee
Confidence            69999999999987 55555     799999999999999999874411      233 78999998876433 665

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.32  E-value=7.9e-07  Score=77.95  Aligned_cols=61  Identities=20%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|.++..|.... ..+|..||+++.|++.|++.            .+ ++.+..++++.+...||
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------------~~-~~~~~d~~~~~~~~~fD   91 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------------GV-DARTGDVRDWKPKPDTD   91 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------------CC-cEEEcChhhCCCCCCce
Confidence            4689999999999998754432 35899999999999999772            12 67888888886666777

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.30  E-value=1.4e-06  Score=82.87  Aligned_cols=99  Identities=17%  Similarity=0.288  Sum_probs=61.4

Q ss_pred             CCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHH
Q 026812          115 GVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD  194 (232)
Q Consensus       115 ~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle  194 (232)
                      +++++++.|+=++. -+.+|-.....++..+..        ....++||+|||+|++|.. |++.+.+|+.||+++.|++
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~--------~~~~~vLDlGcG~G~~~~~-la~~~~~v~giD~s~~~l~   73 (475)
T PLN02336          4 SVDLTVEAMMLDSK-ASDLDKEERPEILSLLPP--------YEGKSVLELGAGIGRFTGE-LAKKAGQVIALDFIESVIK   73 (475)
T ss_pred             cccccHHHHhhhcc-hhhcCchhhhHHHhhcCc--------cCCCEEEEeCCCcCHHHHH-HHhhCCEEEEEeCCHHHHH
Confidence            45666665554432 122332333444444322        1235899999999999987 5666889999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCcceEEEecCCC--cc-CCCCCC
Q 026812          195 AARESLAPENHMAPDMHKATNFFCVPLQV--IT-NIIQYH  231 (232)
Q Consensus       195 ~Are~l~~~~~~~~~~~rv~n~~~vgLQd--F~-Pe~~YD  231 (232)
                      .+++....       ...+ .+++..+.+  +. |...||
T Consensus        74 ~a~~~~~~-------~~~i-~~~~~d~~~~~~~~~~~~fD  105 (475)
T PLN02336         74 KNESINGH-------YKNV-KFMCADVTSPDLNISDGSVD  105 (475)
T ss_pred             HHHHHhcc-------CCce-EEEEecccccccCCCCCCEE
Confidence            88763211       1233 677777753  22 334666

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.29  E-value=9.6e-07  Score=77.55  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..++||+|||+|.++..| ++...+|.+||+++.|++.|++++.....    ..++ ++++..++++.  ++..||
T Consensus        45 ~~~vLDiGcG~G~~a~~l-a~~g~~v~~vD~s~~~l~~a~~~~~~~g~----~~~v-~~~~~d~~~l~~~~~~~fD  114 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKL-AELGHQVILCDLSAEMIQRAKQAAEAKGV----SDNM-QFIHCAAQDIAQHLETPVD  114 (255)
T ss_pred             CCEEEEeCCCchHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHhcCC----ccce-EEEEcCHHHHhhhcCCCCC
Confidence            358999999999999874 55577999999999999999998754211    1233 67888888775  344676

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.25  E-value=2e-06  Score=61.92  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=45.2

Q ss_pred             eccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       162 LDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ||+|||.|+.+.. |++. ..+|..+|+++.+++.+++....        .++ ++.+..++++..+ ..||
T Consensus         1 LdiG~G~G~~~~~-l~~~~~~~v~~~D~~~~~~~~~~~~~~~--------~~~-~~~~~d~~~l~~~~~sfD   62 (95)
T PF08241_consen    1 LDIGCGTGRFAAA-LAKRGGASVTGIDISEEMLEQARKRLKN--------EGV-SFRQGDAEDLPFPDNSFD   62 (95)
T ss_dssp             EEET-TTSHHHHH-HHHTTTCEEEEEES-HHHHHHHHHHTTT--------STE-EEEESBTTSSSS-TT-EE
T ss_pred             CEecCcCCHHHHH-HHhccCCEEEEEeCCHHHHHHHHhcccc--------cCc-hheeehHHhCcccccccc
Confidence            8999999999986 5565 88999999999999999998754        233 4888888888633 3555

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.25  E-value=3.5e-06  Score=72.79  Aligned_cols=63  Identities=17%  Similarity=0.061  Sum_probs=47.3

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|..+..|.... ..+|..||+++.+++.|++++..          + ++.+..+.+..++..||
T Consensus        44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~----------~-~~~~~d~~~~~~~~sfD  107 (204)
T TIGR03587        44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN----------I-NIIQGSLFDPFKDNFFD  107 (204)
T ss_pred             CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC----------C-cEEEeeccCCCCCCCEE
Confidence            3579999999999998854432 46899999999999999987522          2 55666666644455666

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.25  E-value=2.6e-06  Score=70.91  Aligned_cols=81  Identities=17%  Similarity=0.151  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCc
Q 026812          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKA  213 (232)
Q Consensus       136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv  213 (232)
                      .+|+-+++.+...        ...++||+|||+|-++.. |++.+.  +|++||.++..++.|++++.....     .. 
T Consensus        18 ~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~-la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~~-   82 (170)
T PF05175_consen   18 AGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLA-LAKRGPDAKVTAVDINPDALELAKRNAERNGL-----EN-   82 (170)
T ss_dssp             HHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHH-HHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----TT-
T ss_pred             HHHHHHHHHHhhc--------cCCeEEEecCChHHHHHH-HHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----cc-
Confidence            4666666666552        345899999999999986 455554  599999999999999999866322     12 


Q ss_pred             ceEEEecCCCccCCCCCC
Q 026812          214 TNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       214 ~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++++..+-+..+..+||
T Consensus        83 v~~~~~d~~~~~~~~~fD  100 (170)
T PF05175_consen   83 VEVVQSDLFEALPDGKFD  100 (170)
T ss_dssp             EEEEESSTTTTCCTTCEE
T ss_pred             ccccccccccccccccee
Confidence            377777776666666777

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.21  E-value=1.5e-06  Score=75.60  Aligned_cols=66  Identities=21%  Similarity=0.132  Sum_probs=49.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||-||-|..|..+.| .|++||.++..++.+.+.....      .-.| +..+..|.+|.++..||
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~------~l~i-~~~~~Dl~~~~~~~~yD   96 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEE------GLDI-RTRVADLNDFDFPEEYD   96 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHT------T-TE-EEEE-BGCCBS-TTTEE
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhc------Ccee-EEEEecchhccccCCcC
Confidence            46899999999999987555556 8999999999999987654331      1123 78899999999888887

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.20  E-value=2.7e-06  Score=72.26  Aligned_cols=67  Identities=19%  Similarity=0.084  Sum_probs=52.3

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.+|..+ +..+  .+|.+||+++.+++.+++++.....     ..+ ++.+..++++.+...||
T Consensus        43 ~~~vLDiGcGtG~~s~~l-a~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-----~~i-~~i~~d~~~~~~~~~fD  111 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPL-AIARPELKLTLLESNHKKVAFLREVKAELGL-----NNV-EIVNGRAEDFQHEEQFD  111 (181)
T ss_pred             CCeEEEecCCCCccHHHH-HHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-----CCe-EEEecchhhccccCCcc
Confidence            358999999999999875 4443  5899999999999999988754211     234 78899999886666887

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.20  E-value=3.8e-06  Score=71.82  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      ..++||+|||+|.++..+....  ..+|..||+++.+++.|++++.....     .++ ++++....++. |+..||
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~fD  116 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNV-ELVHGNAMELPFDDNSFD  116 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-----Cce-EEEEechhcCCCCCCCcc
Confidence            4689999999999998744332  24999999999999999998754211     233 67777777665 334676

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.18  E-value=5.3e-06  Score=70.95  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=50.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|.++..+ +....+|..||+++.|++.|++++.....    ..++ .+.+..+++..  ..||
T Consensus        55 ~~~~vLDiGcG~G~~~~~l-a~~~~~v~gvD~s~~~i~~a~~~~~~~~~----~~~i-~~~~~d~~~~~--~~fD  121 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIEL-AKRGAIVKAVDISEQMVQMARNRAQGRDV----AGNV-EFEVNDLLSLC--GEFD  121 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEECChhhCC--CCcC
Confidence            3468999999999999885 45567999999999999999998754211    1233 77777777654  5666

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.18  E-value=3.8e-06  Score=79.64  Aligned_cols=63  Identities=22%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       131 s~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+| .|++-||..|...        ...+|||+|||.|.++..+.... -.+|++||.++.+++.|++++..
T Consensus       211 ~~LD-~GtrllL~~lp~~--------~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~  274 (378)
T PRK15001        211 TGLD-IGARFFMQHLPEN--------LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET  274 (378)
T ss_pred             CCcC-hHHHHHHHhCCcc--------cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            4577 7899999987542        12489999999999998754443 25999999999999999998854

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.15  E-value=4.5e-06  Score=72.62  Aligned_cols=62  Identities=18%  Similarity=0.269  Sum_probs=47.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|.+|.. |.....+|..||+++.|++.|+++...           .++.+..++++.. +..||
T Consensus        43 ~~~vLDiGcG~G~~~~~-l~~~~~~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD  105 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRY-WRERGSQVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFD  105 (251)
T ss_pred             CCeEEEeeCCCCHHHHH-HHHcCCeEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEE
Confidence            46899999999999986 455678999999999999999987522           1456666666542 33565

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.14  E-value=4.7e-06  Score=73.26  Aligned_cols=68  Identities=9%  Similarity=0.070  Sum_probs=50.0

Q ss_pred             ceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|..+..++...   ..+|+.||+++.|++.|++++.....    ..++ ++++..++++.+. .||
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~----~~~v-~~~~~d~~~~~~~-~~D  127 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPV-DVIEGDIRDIAIE-NAS  127 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCe-EEEeCChhhCCCC-CCC
Confidence            3589999999999998754421   25999999999999999998854211    1244 7788888876433 354

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.14  E-value=9.9e-06  Score=61.51  Aligned_cols=60  Identities=17%  Similarity=-0.011  Sum_probs=44.4

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      ..++||+|||+|+++..++...- .+|..||+++.+++.+++++.....     .++ ++++..+++
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~-~~~~~~~~~   80 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-----SNI-VIVEGDAPE   80 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-----Cce-EEEeccccc
Confidence            35899999999999998654432 5899999999999999988754211     233 566665554

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.09  E-value=5.7e-06  Score=75.43  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             ccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHH
Q 026812          117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA  196 (232)
Q Consensus       117 eaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~A  196 (232)
                      ..++||+| |.+.+.-.--..-++||.   ..+.......+..+.||+|||-|-||.. |++.|++|.+-|.|+.|...+
T Consensus        58 ~T~iNG~L-gRG~MFvfS~~Q~~~LL~---~~~~~~~~~~~~~~lLDlGAGdG~VT~~-l~~~f~~v~aTE~S~~Mr~rL  132 (265)
T PF05219_consen   58 KTDINGIL-GRGSMFVFSEEQFRKLLR---ISGFSWNPDWKDKSLLDLGAGDGEVTER-LAPLFKEVYATEASPPMRWRL  132 (265)
T ss_pred             HHhHhhhh-cCCcEEEecHHHHHHHhh---hhccCCCCcccCCceEEecCCCcHHHHH-HHhhcceEEeecCCHHHHHHH
Confidence            45889999 456554433233333333   3222211223567899999999999998 699999999999999998877


Q ss_pred             HHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          197 RESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       197 re~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      ++.               .|-+++.++|.-.. +||
T Consensus       133 ~~k---------------g~~vl~~~~w~~~~~~fD  153 (265)
T PF05219_consen  133 SKK---------------GFTVLDIDDWQQTDFKFD  153 (265)
T ss_pred             HhC---------------CCeEEehhhhhccCCceE
Confidence            761               44566666676333 665

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.09  E-value=7.9e-06  Score=73.22  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=47.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|.+|..+ ++.+.+|++||.++.|++.+++++..        .++ ++++..+.++.+
T Consensus        43 ~~~VLEiG~G~G~lt~~L-~~~~~~v~avE~d~~~~~~~~~~~~~--------~~v-~~i~~D~~~~~~  101 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPL-LERAAKVTAVEIDRDLAPILAETFAE--------DNL-TIIEGDALKVDL  101 (272)
T ss_pred             cCeEEEeCCCccHHHHHH-HHhCCcEEEEECCHHHHHHHHHhhcc--------Cce-EEEEChhhcCCH
Confidence            358999999999999875 55567999999999999999987743        233 677777777654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.08  E-value=5.6e-06  Score=74.36  Aligned_cols=65  Identities=22%  Similarity=0.153  Sum_probs=48.6

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||.||.+..|.. ...+|++||.++.+++.++++.....      -.+ ++.+..+.++.++.+||
T Consensus       122 ~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~------l~v-~~~~~D~~~~~~~~~fD  186 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKEN------LNI-RTGLYDINSASIQEEYD  186 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcC------Cce-EEEEechhcccccCCcc
Confidence            4899999999999987544 45599999999999999998764421      122 55666666665556777

>PRK05785 hypothetical protein; Provisional

Probab=98.05  E-value=1.3e-05  Score=70.16  Aligned_cols=40  Identities=20%  Similarity=0.272  Sum_probs=34.7

Q ss_pred             eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHH
Q 026812          159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~  199 (232)
                      .++||+|||+|.++.. |.+.+ .+|..||+++.|++.|++.
T Consensus        53 ~~VLDlGcGtG~~~~~-l~~~~~~~v~gvD~S~~Ml~~a~~~   93 (226)
T PRK05785         53 KKVLDVAAGKGELSYH-FKKVFKYYVVALDYAENMLKMNLVA   93 (226)
T ss_pred             CeEEEEcCCCCHHHHH-HHHhcCCEEEEECCCHHHHHHHHhc
Confidence            5899999999999987 45553 6999999999999999873

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.04  E-value=1.3e-05  Score=68.93  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             cceeeeccCCccccchHHHHhhccCe---eEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~---VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.+|.. |++.+..   |..||.++.+++.|++++.....     ..+ ++.+....+..+ ...||
T Consensus        77 ~~~~VLDiG~GsG~~a~~-la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-----~~v-~~~~~d~~~~~~~~~~fD  148 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAV-LAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-----DNV-IVIVGDGTQGWEPLAPYD  148 (215)
T ss_pred             CcCEEEEECCCccHHHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCe-EEEECCcccCCcccCCCC
Confidence            346999999999999974 7777655   99999999999999999865211     233 566666655433 34677

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.04  E-value=3.7e-07  Score=68.31  Aligned_cols=41  Identities=34%  Similarity=0.460  Sum_probs=33.8

Q ss_pred             eccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          162 LDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       162 LDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ||+|||+|+.+..++... ..+|+.||+++.|++.|++.+..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~   42 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE   42 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh
Confidence            799999999999876662 57999999999999988887755

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.00  E-value=2e-05  Score=74.94  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=57.0

Q ss_pred             cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCC
Q 026812          133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK  212 (232)
Q Consensus       133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~r  212 (232)
                      .++...+.+++.+..        .+..++||+|||.|.++..|......+|..||+++.+++.|+++....      ..+
T Consensus       250 ~~v~~te~l~~~~~~--------~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~------~~~  315 (475)
T PLN02336        250 GGLETTKEFVDKLDL--------KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR------KCS  315 (475)
T ss_pred             chHHHHHHHHHhcCC--------CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC------CCc
Confidence            333445555555432        234589999999999998754443458999999999999999876431      123


Q ss_pred             cceEEEecCCCcc-CCCCCC
Q 026812          213 ATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       213 v~n~~~vgLQdF~-Pe~~YD  231 (232)
                      + +|.+..+.+.. |+..||
T Consensus       316 v-~~~~~d~~~~~~~~~~fD  334 (475)
T PLN02336        316 V-EFEVADCTKKTYPDNSFD  334 (475)
T ss_pred             e-EEEEcCcccCCCCCCCEE
Confidence            3 67777776654 344676

>TIGR00452 methyltransferase, putative

Probab=97.99  E-value=1.4e-05  Score=73.93  Aligned_cols=66  Identities=17%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHH---HHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAAR---ESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Ar---e~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||.|..+..++...+..|..|||++.|+.+++   ..+..       ..++ .+.+.+++++.+...||
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-------~~~v-~~~~~~ie~lp~~~~FD  190 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-------DKRA-ILEPLGIEQLHELYAFD  190 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------CCCe-EEEECCHHHCCCCCCcC
Confidence            4689999999999999877776678999999999998753   22222       1233 67778888877666777

Known examples to date are restricted to the proteobacteria.

>PLN02244 tocopherol O-methyltransferase

Probab=97.99  E-value=1.5e-05  Score=73.68  Aligned_cols=70  Identities=19%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      +..++||+|||+|.++..|......+|..||+++.+++.|+++......    ..+| +|.+..++++. ++..||
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~----~~~v-~~~~~D~~~~~~~~~~FD  188 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL----SDKV-SFQVADALNQPFEDGQFD  188 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEEcCcccCCCCCCCcc
Confidence            4468999999999999874433346999999999999999987644211    1233 67777777654 345776

>PRK06202 hypothetical protein; Provisional

Probab=97.98  E-value=1.1e-05  Score=69.59  Aligned_cols=43  Identities=30%  Similarity=0.417  Sum_probs=35.6

Q ss_pred             ceeeeccCCccccchHHHHhhcc------CeeEEecCcHHHHHHHHHHhC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f------~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ..++||+|||+|.++..| ++.+      .+|.+||+++.|++.|++...
T Consensus        61 ~~~iLDlGcG~G~~~~~L-~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~  109 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDL-ARWARRDGLRLEVTAIDPDPRAVAFARANPR  109 (232)
T ss_pred             CcEEEEeccCCCHHHHHH-HHHHHhCCCCcEEEEEcCCHHHHHHHHhccc
Confidence            468999999999999864 4321      389999999999999998753

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.98  E-value=7.4e-06  Score=75.06  Aligned_cols=69  Identities=16%  Similarity=0.235  Sum_probs=55.4

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC-CCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~-~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||.|-+|.+ |+++..+|..||+++.++++|++.....|... ....|+ ++.|..++++++.  ||
T Consensus        91 ~~ilDvGCGgGLLSep-LArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l-~~~~~~~E~~~~~--fD  160 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEP-LARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRL-EYEDTDVEGLTGK--FD  160 (282)
T ss_pred             ceEEEeccCccccchh-hHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceee-ehhhcchhhcccc--cc
Confidence            5699999999999999 89999999999999999999999855555321 111234 7888888888874  87

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.98  E-value=5.5e-06  Score=63.11  Aligned_cols=68  Identities=16%  Similarity=0.106  Sum_probs=52.6

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD  231 (232)
                      .++||.|||.|+++..++.....+|..||.++..++.|++++.....    ..++ ++++..++++.   +..+||
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~----~~~~-~~~~~D~~~~~~~~~~~~~D   72 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL----DDRV-EVIVGDARDLPEPLPDGKFD   72 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT----TTTE-EEEESHHHHHHHTCTTT-EE
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC----CceE-EEEECchhhchhhccCceeE
Confidence            48999999999999876555438999999999999999998865321    2444 88999888876   344665

...

>TIGR00740 methyltransferase, putative

Probab=97.98  E-value=1.7e-05  Score=68.86  Aligned_cols=64  Identities=11%  Similarity=0.128  Sum_probs=48.2

Q ss_pred             ceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|..+..++...   ..+|..||+++.|++.|++++.....    ..++ ++.+..++++.+
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~  120 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS----EIPV-EILCNDIRHVEI  120 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC----CCCe-EEEECChhhCCC
Confidence            3589999999999998755432   24799999999999999998754211    1234 778888887654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.98  E-value=5.8e-06  Score=74.73  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=57.5

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII  228 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~  228 (232)
                      ..+|||+|||.|-++. +|++++  .+|++||..+.+.+.|+++++.+++    .++| +|++..+++|.+..
T Consensus        45 ~~~IlDlGaG~G~l~L-~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l----~~ri-~v~~~Di~~~~~~~  111 (248)
T COG4123          45 KGRILDLGAGNGALGL-LLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL----EERI-QVIEADIKEFLKAL  111 (248)
T ss_pred             CCeEEEecCCcCHHHH-HHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc----hhce-eEehhhHHHhhhcc
Confidence            5699999999999996 678874  6999999999999999999988776    4777 99999999999776

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.97  E-value=1.7e-05  Score=73.46  Aligned_cols=82  Identities=23%  Similarity=0.332  Sum_probs=61.6

Q ss_pred             cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCC
Q 026812          131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAP  208 (232)
Q Consensus       131 s~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~  208 (232)
                      .++| .||+-+|..|...        ...+|||+|||.|-++.. |++.+  .+|+|||.+..-++.|++|+..      
T Consensus       141 ~~lD-~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~-la~~~p~~~vtmvDvn~~Av~~ar~Nl~~------  204 (300)
T COG2813         141 DKLD-KGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLV-LAKKSPQAKLTLVDVNARAVESARKNLAA------  204 (300)
T ss_pred             CCcC-hHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHH-HHHhCCCCeEEEEecCHHHHHHHHHhHHH------
Confidence            4567 7999999998662        123899999999999986 56655  5999999999999999999976      


Q ss_pred             CCCCcc--eEEEecCCCccCCCCCC
Q 026812          209 DMHKAT--NFFCVPLQVITNIIQYH  231 (232)
Q Consensus       209 ~~~rv~--n~~~vgLQdF~Pe~~YD  231 (232)
                        +++.  .++...+.+=..+ +||
T Consensus       205 --N~~~~~~v~~s~~~~~v~~-kfd  226 (300)
T COG2813         205 --NGVENTEVWASNLYEPVEG-KFD  226 (300)
T ss_pred             --cCCCccEEEEecccccccc-ccc
Confidence              3333  3666666553333 666

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=97.95  E-value=1.1e-05  Score=71.30  Aligned_cols=69  Identities=20%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|-+|..+..+..  .+|+.||+++.|++.|++.+.....     ..| ++.+...++... ++.||
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-----~~i-~~v~~da~~lp~~d~sfD  118 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-----QNI-EFVQGDAEDLPFPDNSFD  118 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-------SE-EEEE-BTTB--S-TT-EE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----CCe-eEEEcCHHHhcCCCCcee
Confidence            346999999999999987544432  4999999999999999988754221     244 777887887653 34665

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.95  E-value=1.6e-05  Score=73.61  Aligned_cols=70  Identities=16%  Similarity=0.100  Sum_probs=48.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|+++..|. +...+|..||+++.|++.|+++...... ........+|.+..+.++  ...||
T Consensus       145 ~~~VLDlGcGtG~~a~~la-~~g~~V~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~f~~~Dl~~l--~~~fD  214 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLA-LEGAIVSASDISAAMVAEAERRAKEALA-ALPPEVLPKFEANDLESL--SGKYD  214 (315)
T ss_pred             CCEEEEecCCCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhccc-ccccccceEEEEcchhhc--CCCcC
Confidence            3689999999999998754 5566999999999999999988643100 000011225666676654  34676

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.94  E-value=2.1e-05  Score=66.07  Aligned_cols=63  Identities=25%  Similarity=0.416  Sum_probs=47.8

Q ss_pred             eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      .++||+|||.|.++..++.... .+|+.||+++.+++.+++.+..         ++ ++++..+.++. |+..||
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~---------~~-~~~~~d~~~~~~~~~~fD  100 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE---------NV-QFICGDAEKLPLEDSSFD  100 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC---------CC-eEEecchhhCCCCCCcee
Confidence            6899999999999987554432 5689999999999999987631         22 66777777765 344676

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.93  E-value=2.7e-05  Score=69.94  Aligned_cols=68  Identities=21%  Similarity=0.221  Sum_probs=49.5

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||||||+|.+|.. |++.+  .+|.++|+|+.||+.|++.+.....     ..| +|.....++.-. ++.||
T Consensus        51 ~g~~vLDva~GTGd~a~~-~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~-----~~i-~fv~~dAe~LPf~D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALL-LAKSVGTGEVVGLDISESMLEVAREKLKKKGV-----QNV-EFVVGDAENLPFPDNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHH-HHHhcCCceEEEEECCHHHHHHHHHHhhccCc-----cce-EEEEechhhCCCCCCccC
Confidence            346899999999999986 67766  7999999999999999998754211     112 566666555542 33555

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=97.93  E-value=2.2e-05  Score=69.92  Aligned_cols=70  Identities=14%  Similarity=0.004  Sum_probs=48.3

Q ss_pred             ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||+|||+|+++.. |++.+   .+|..||+++.|++.|++.......  ....++ ++.+..++++..+ ..||
T Consensus        74 ~~~VLDlGcGtG~~~~~-la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i-~~~~~d~~~lp~~~~sfD  147 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFL-LSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNI-EWIEGDATDLPFDDCYFD  147 (261)
T ss_pred             CCEEEEECCcCCHHHHH-HHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCe-EEEEcccccCCCCCCCEe
Confidence            46899999999999976 55543   4899999999999999876421000  001233 6777777776533 3666

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.92  E-value=2.7e-05  Score=67.33  Aligned_cols=68  Identities=13%  Similarity=0.208  Sum_probs=49.9

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC-ccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV-ITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd-F~Pe~~YD  231 (232)
                      +..++||+|||+|-+|.. |++.+   .+|..||+++.+++.|++++.....     .+| ++.+....+ +.+...||
T Consensus        76 ~g~~VLdIG~GsG~~t~~-la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-----~~v-~~~~gd~~~~~~~~~~fD  147 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAV-VAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-----DNV-EVIVGDGTLGYEENAPYD  147 (212)
T ss_pred             CcCEEEEECCcccHHHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCe-EEEECCcccCCCcCCCcC
Confidence            346899999999999964 66654   5999999999999999999865211     234 566666544 33345787

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.91  E-value=2.8e-05  Score=66.29  Aligned_cols=68  Identities=15%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC-ccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV-ITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd-F~Pe~~YD  231 (232)
                      +..++||+|||+|..|. +|+..+.+|..||.++.+++.|++++.....     ..+ ++.+....+ +.+...||
T Consensus        78 ~~~~VLeiG~GsG~~t~-~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~fD  146 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAA-VLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-----HNV-SVRHGDGWKGWPAYAPFD  146 (212)
T ss_pred             CCCEEEEECCCccHHHH-HHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-----Cce-EEEECCcccCCCcCCCcC
Confidence            34689999999999996 5777778999999999999999998865321     122 555554432 33335677

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.91  E-value=3.2e-05  Score=68.21  Aligned_cols=61  Identities=18%  Similarity=0.236  Sum_probs=47.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      +..++||+|||+|.+|.. |++.+.+|.+||+++.|++.+++++...       .++ ++.+..+.++.+
T Consensus        29 ~~~~VLEiG~G~G~lt~~-L~~~~~~v~~iE~d~~~~~~l~~~~~~~-------~~v-~v~~~D~~~~~~   89 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEP-LLKRAKKVTAIEIDPRLAEILRKLLSLY-------ERL-EVIEGDALKVDL   89 (253)
T ss_pred             CcCEEEEeCCCCCHHHHH-HHHhCCcEEEEECCHHHHHHHHHHhCcC-------CcE-EEEECchhcCCh
Confidence            346899999999999987 5666789999999999999999887431       233 566666665543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02366 spermidine synthase

Probab=97.91  E-value=2.9e-05  Score=71.67  Aligned_cols=102  Identities=16%  Similarity=0.122  Sum_probs=70.8

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|....+..|-..-...|.++.....     ....+||++|+|.|-+.+.++..- ..+||+||.++..++.|++++.
T Consensus        62 ~lDg~~q~~~~de~~Y~e~l~h~~l~~~-----~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~  136 (308)
T PLN02366         62 VLDGVIQLTERDECAYQEMITHLPLCSI-----PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFP  136 (308)
T ss_pred             EECCEeeecCccHHHHHHHHHHHHHhhC-----CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhh
Confidence            6777777888885444666766543211     235689999999999999876542 4799999999999999999885


Q ss_pred             CCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812          202 PENHMAPDMHKATNFFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD  231 (232)
                      .... +-+..|+ ++++....+|.   |..+||
T Consensus       137 ~~~~-~~~dpRv-~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366        137 DLAV-GFDDPRV-NLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             hhcc-ccCCCce-EEEEChHHHHHhhccCCCCC
Confidence            4211 1234576 77777754442   345787

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.90  E-value=2.5e-05  Score=66.92  Aligned_cols=68  Identities=12%  Similarity=0.050  Sum_probs=49.5

Q ss_pred             ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||+|||+|.+|.. |++.+   .+|..||.++.+++.|++++.....    ..++ ++++..+.+.-|. ..||
T Consensus        73 ~~~VLDiG~GsG~~~~~-la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----~~~v-~~~~~d~~~~~~~~~~fD  144 (205)
T PRK13944         73 GMKILEVGTGSGYQAAV-CAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----WGVV-EVYHGDGKRGLEKHAPFD  144 (205)
T ss_pred             CCEEEEECcCccHHHHH-HHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcE-EEEECCcccCCccCCCcc
Confidence            46899999999999965 56554   5999999999999999998855211    1223 6677666654333 4777

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.90  E-value=2.4e-05  Score=67.12  Aligned_cols=67  Identities=16%  Similarity=0.195  Sum_probs=49.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      +..++||+|||.|.++..++ +...+|+.+|+++.+++.|++++....      ..+ ++....++++.  +..+||
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~-~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~fD  116 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMA-RLGADVTGIDASEENIEVARLHALESG------LKI-DYRQTTAEELAAEHPGQFD  116 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHH-HcCCeEEEEcCCHHHHHHHHHHHHHcC------Cce-EEEecCHHHhhhhcCCCcc
Confidence            34689999999999998755 445689999999999999998764311      122 56666666664  335777

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.88  E-value=3.8e-05  Score=64.26  Aligned_cols=45  Identities=18%  Similarity=0.271  Sum_probs=37.6

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.+|..++...- .+|++||+++.+++.|++++..
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~   77 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR   77 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            35899999999999988554432 4899999999999999998754

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.88  E-value=2.3e-05  Score=70.59  Aligned_cols=63  Identities=21%  Similarity=0.237  Sum_probs=53.7

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++.|+|||+|--|+ +|.++|  ..|.-+|-|+.|+++|++.+-.           .+|....|++|.|+...|
T Consensus        30 ~~~~v~DLGCGpGnsTe-lL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-----------~~f~~aDl~~w~p~~~~d   94 (257)
T COG4106          30 RPRRVVDLGCGPGNSTE-LLARRWPDAVITGIDSSPAMLAKAAQRLPD-----------ATFEEADLRTWKPEQPTD   94 (257)
T ss_pred             ccceeeecCCCCCHHHH-HHHHhCCCCeEeeccCCHHHHHHHHHhCCC-----------CceecccHhhcCCCCccc
Confidence            45789999999999997 588887  8999999999999999987622           288999999999987544

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.88  E-value=4.1e-05  Score=63.65  Aligned_cols=64  Identities=14%  Similarity=0.045  Sum_probs=47.5

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++..+ ++...+|..||.++.|++.|++++....      .. .++++..+.++.+ .+||
T Consensus        21 ~~vLdlG~G~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~-~~~~~~d~~~~~~-~~fD   84 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRL-KGKGKCILTTDINPFAVKELRENAKLNN------VG-LDVVMTDLFKGVR-GKFD   84 (179)
T ss_pred             CeEEEeCCChhHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHHcC------Cc-eEEEEcccccccC-Cccc
Confidence            57999999999999875 4555599999999999999999875421      12 2566666655433 3666

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.87  E-value=1.4e-05  Score=68.45  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=44.8

Q ss_pred             eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC-CCc
Q 026812          159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL-QdF  224 (232)
                      .++||+|||+|..|..+ ++.+  .+|..||+++.|++.|++++.....     .++ ++++..+ +.+
T Consensus        42 ~~VLDiGcGtG~~~~~l-a~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-----~~v-~~~~~d~~~~l  103 (202)
T PRK00121         42 PIHLEIGFGKGEFLVEM-AKANPDINFIGIEVHEPGVGKALKKIEEEGL-----TNL-RLLCGDAVEVL  103 (202)
T ss_pred             CeEEEEccCCCHHHHHH-HHHCCCccEEEEEechHHHHHHHHHHHHcCC-----CCE-EEEecCHHHHH
Confidence            58999999999999875 4444  5899999999999999988754211     233 6777776 443

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.87  E-value=3.9e-05  Score=64.76  Aligned_cols=69  Identities=19%  Similarity=0.121  Sum_probs=50.8

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||+|||.|.++..++...  ..+|..||+++.+++.+++++.....    ... .++++..+.++... ..||
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~~~D  123 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL----SGN-VEFVQGDAEALPFPDNSFD  123 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc----ccC-eEEEecccccCCCCCCCcc
Confidence            3689999999999999866655  37999999999999999998754211    122 36777777665432 3565

>PRK14967 putative methyltransferase; Provisional

Probab=97.83  E-value=4.3e-05  Score=65.99  Aligned_cols=67  Identities=10%  Similarity=0.009  Sum_probs=49.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..+....+.+|.+||.++.+++.+++++....      -.+ .+++..+.++.+...||
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~------~~~-~~~~~d~~~~~~~~~fD  103 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG------VDV-DVRRGDWARAVEFRPFD  103 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC------Cee-EEEECchhhhccCCCee
Confidence            36899999999999987443334699999999999999999874411      122 56676776655555666

>TIGR00417 speE spermidine synthase

Probab=97.82  E-value=4.5e-05  Score=68.21  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=53.7

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|+|..+.++.|-..-...|..+.....     ....+||++|||.|.+++.+|... +.+|++||.++.+++.|++++.
T Consensus        43 ~ldg~~q~~~~~e~~y~e~l~~~~l~~~-----~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~  117 (270)
T TIGR00417        43 VLDGVVQTTERDEFIYHEMIAHVPLFTH-----PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLP  117 (270)
T ss_pred             EECCcccccCchHHHHHHHhhhhHhhcC-----CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhH
Confidence            4666666666663333455555432111     223489999999999999877665 6899999999999999999874


Q ss_pred             C
Q 026812          202 P  202 (232)
Q Consensus       202 ~  202 (232)
                      .
T Consensus       118 ~  118 (270)
T TIGR00417       118 S  118 (270)
T ss_pred             h
Confidence            3

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.82  E-value=4.5e-05  Score=70.33  Aligned_cols=67  Identities=18%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH--hCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~--l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||.|..+..|+......|..|||++.|+.+++..  ....      ..+| ++.+.+++++.+...||
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~------~~~i-~~~~~d~e~lp~~~~FD  191 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN------DQRA-HLLPLGIEQLPALKAFD  191 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC------CCCe-EEEeCCHHHCCCcCCcC
Confidence            358999999999999987766667899999999999865432  2110      1234 78888888876555776

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.81  E-value=2e-05  Score=68.46  Aligned_cols=61  Identities=23%  Similarity=0.207  Sum_probs=48.9

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      .++||+|||+|.++..+|++.+.+|++||.++.+++.|++|+.....     .++ ++++..+.++-
T Consensus        55 ~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-----~~v-~~~~~D~~~~l  115 (199)
T PRK10909         55 ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-----GNA-RVVNTNALSFL  115 (199)
T ss_pred             CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----CcE-EEEEchHHHHH
Confidence            58999999999999877888889999999999999999999855211     233 67777665543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.80  E-value=6.7e-05  Score=70.04  Aligned_cols=151  Identities=19%  Similarity=0.250  Sum_probs=87.7

Q ss_pred             ceeeeecchhhhhhhhhhccccCCCCCCCcccccccccCCCCCcccCHHHHHHHHhccCCchhhh-------hhhh--hh
Q 026812           37 TLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEK-------KTQW--YR  107 (232)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ds~g~~~~s~~emWk~~~~~d~~~~~~-------~~~~--Y~  107 (232)
                      .+=++.+-+-|..++-.-+-+.+-  -+.-..+-+.|....|-  +|...+.+...+....+.-.       ...+  .-
T Consensus        78 d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g~--~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~~~~  153 (342)
T PRK09489         78 DTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSGV--RSAEKMLADYAPLNKIDSARRCGLYHGRLEKQPVF  153 (342)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEeccccH--HHHHHHHHHhcCccccccceeEEEEEEeccccCCC
Confidence            344566666666555443333221  12234566788888775  78888887754321110000       0000  01


Q ss_pred             hhhhcccCCcc---chhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--Ce
Q 026812          108 EGISYWEGVEA---SVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NE  182 (232)
Q Consensus       108 ~a~~YWe~vea---TvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~  182 (232)
                      +..+||..-.-   ++...=|.|.+ ..+| .+|+.+|..|...        ...++||+|||.|-++..++ +.+  .+
T Consensus       154 ~~~~~~~~y~~~~l~i~~~pgvFs~-~~lD-~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la-~~~p~~~  222 (342)
T PRK09489        154 DADKFWKEYQVDGLTVKTLPGVFSR-DGLD-VGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLA-RHSPKIR  222 (342)
T ss_pred             cccccceeeecCCEEEEeCCCCCCC-CCCC-HHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHH-HhCCCCE
Confidence            23556654321   12211222332 4455 5788888877541        12479999999999998754 444  48


Q ss_pred             eEEecCcHHHHHHHHHHhCC
Q 026812          183 VDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       183 VDLVEPv~~Fle~Are~l~~  202 (232)
                      |++||.++.+++.|++++..
T Consensus       223 v~~vDis~~Al~~A~~nl~~  242 (342)
T PRK09489        223 LTLSDVSAAALESSRATLAA  242 (342)
T ss_pred             EEEEECCHHHHHHHHHHHHH
Confidence            99999999999999998865

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.80  E-value=7.5e-05  Score=66.36  Aligned_cols=59  Identities=15%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..++||+|||.|.+|..+ ++.+.+|.+||.++.+++.+++++...       .++ ++++..+.++.
T Consensus        30 ~~~VLEIG~G~G~lt~~L-~~~~~~v~~vEid~~~~~~l~~~~~~~-------~~v-~ii~~D~~~~~   88 (258)
T PRK14896         30 GDPVLEIGPGKGALTDEL-AKRAKKVYAIELDPRLAEFLRDDEIAA-------GNV-EIIEGDALKVD   88 (258)
T ss_pred             cCeEEEEeCccCHHHHHH-HHhCCEEEEEECCHHHHHHHHHHhccC-------CCE-EEEEeccccCC
Confidence            468999999999999875 455789999999999999999987431       334 66777766654

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.77  E-value=5.2e-05  Score=53.24  Aligned_cols=66  Identities=17%  Similarity=0.126  Sum_probs=48.7

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      ++||+|||.|.++..++.....++..+|+++.+++.+++.....      .....++++..+.++.+  ..+||
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d   68 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL------LADNVEVLKGDAEELPPEADESFD   68 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc------cccceEEEEcChhhhccccCCceE
Confidence            47999999999998876645689999999999999998432221      12234788888888763  34565

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.77  E-value=6.2e-05  Score=64.58  Aligned_cols=67  Identities=21%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||.|.++..++... -.+|..+|+++.+++.|++++.....     .++ ++++..+.+..+..+||
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----~~~-~~~~~d~~~~~~~~~fD  156 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-----DNV-TFLQSDWFEPLPGGKFD  156 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CeE-EEEECchhccCcCCcee
Confidence            589999999999998865442 24999999999999999998754211     123 67777765544455665

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.77  E-value=3.7e-05  Score=65.28  Aligned_cols=44  Identities=27%  Similarity=0.362  Sum_probs=37.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.++..|+ +...+|+.||+++.+++.|++++..
T Consensus        64 ~~~vLDvGcG~G~~~~~l~-~~~~~v~~~D~s~~~i~~a~~~~~~  107 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLA-RRGAKVVASDISPQMVEEARERAPE  107 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHh
Confidence            3589999999999998855 4456799999999999999998754

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.76  E-value=4.7e-05  Score=60.18  Aligned_cols=42  Identities=19%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             eeccCCccccchHHHHhhccC-eeEEecCcHHHHHHHHHHhCC
Q 026812          161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       161 ALDcGAGIGRVTk~lLl~~f~-~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +||||||+|-.|..++..... +|.+|||++.+.+.+++++..
T Consensus         2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~   44 (143)
T TIGR01444         2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL   44 (143)
T ss_pred             EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH
Confidence            799999999999875544332 799999999999999998754

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.75  E-value=4.4e-05  Score=69.12  Aligned_cols=68  Identities=18%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++..+.... -.+|.+||.++.+++.|++++.....    ..+| ++++..+.+..|..+||
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~----~~~i-~~~~~D~~~~~~~~~fD  191 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL----EDRV-TLIQSDLFAALPGRKYD  191 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECchhhccCCCCcc
Confidence            589999999999998754432 24899999999999999999854211    1234 67777765444544666

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PHA03411 putative methyltransferase; Provisional

Probab=97.75  E-value=4.8e-05  Score=69.92  Aligned_cols=62  Identities=19%  Similarity=0.254  Sum_probs=49.9

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .+|||+|||+|.++..++... ..+|.+||.++.|++.|++++.          ++ ++++..+.+|.+..+||
T Consensus        66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----------~v-~~v~~D~~e~~~~~kFD  128 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----------EA-EWITSDVFEFESNEKFD  128 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----------CC-EEEECchhhhcccCCCc
Confidence            489999999999998765543 3699999999999999998752          22 67888888877656776

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.72  E-value=6.8e-05  Score=63.53  Aligned_cols=67  Identities=16%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      ..++||+|||+|.++..+.. ...+|+.+|+++.+++.+++++.....     .. .++.+..++++.+.  ..||
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~-----~~-~~~~~~d~~~~~~~~~~~~D  114 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPL-----LK-IEYRCTSVEDLAEKGAKSFD  114 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-----Cc-eEEEeCCHHHhhcCCCCCcc
Confidence            46899999999999987554 445799999999999999998754211     12 36777888777544  4676

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.72  E-value=3.3e-05  Score=70.45  Aligned_cols=66  Identities=12%  Similarity=0.015  Sum_probs=51.6

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      .++||+|||+|.+|.. |++...+|..||.++.+++.|++++.....     ..+ +|++..+.+|.+.  ..||
T Consensus       175 ~~VLDl~cG~G~~sl~-la~~~~~V~gvD~s~~av~~A~~n~~~~~l-----~~v-~~~~~D~~~~~~~~~~~~D  242 (315)
T PRK03522        175 RSMWDLFCGVGGFGLH-CATPGMQLTGIEISAEAIACAKQSAAELGL-----TNV-QFQALDSTQFATAQGEVPD  242 (315)
T ss_pred             CEEEEccCCCCHHHHH-HHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce-EEEEcCHHHHHHhcCCCCe
Confidence            5899999999999987 556678999999999999999998755211     233 7888888877532  3566

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.70  E-value=8.1e-05  Score=62.75  Aligned_cols=40  Identities=20%  Similarity=-0.046  Sum_probs=33.6

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are  198 (232)
                      .++||+|||.|.++..+.......|..||+++.+++.|++
T Consensus        15 ~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~   54 (194)
T TIGR02081        15 SRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA   54 (194)
T ss_pred             CEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH
Confidence            4799999999999987544445578999999999999875

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.70  E-value=7.1e-05  Score=63.50  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=49.8

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      +..++||+|||+|.++..++...  ..+|.+||.++.+++.|++++.....    .+.+ .+++....++-+.  ..||
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~----~~~v-~~~~~d~~~~l~~~~~~~D  113 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV----LNNI-VLIKGEAPEILFTINEKFD  113 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC----CCCe-EEEEechhhhHhhcCCCCC
Confidence            44689999999999998754433  36899999999999999998754210    1233 5666666665332  3565

>PRK14968 putative methyltransferase; Provisional

Probab=97.69  E-value=0.00013  Score=59.61  Aligned_cols=44  Identities=14%  Similarity=0.035  Sum_probs=38.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||.|.++..++.. ..+|..+|.++.+++.+++++..
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~   67 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKL   67 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHH
Confidence            358999999999999886555 78999999999999999988754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.69  E-value=6.1e-05  Score=66.45  Aligned_cols=45  Identities=22%  Similarity=0.169  Sum_probs=37.6

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.++..+......+|..||.++.+++.|++++..
T Consensus       120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~  164 (250)
T PRK00517        120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL  164 (250)
T ss_pred             CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence            468999999999999864433345699999999999999998754

>PHA03412 putative methyltransferase; Provisional

Probab=97.69  E-value=5.7e-05  Score=68.14  Aligned_cols=62  Identities=10%  Similarity=0.106  Sum_probs=49.7

Q ss_pred             eeeeccCCccccchHHHHhhc----cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~----f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .+|||+|||+|.++..+...+    -.+|++||.++.+++.|++++..           ..+++..++++.+..+||
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------~~~~~~D~~~~~~~~~FD  116 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------ATWINADALTTEFDTLFD  116 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------CEEEEcchhcccccCCcc
Confidence            589999999999997654332    24899999999999999998632           278888888877666787

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.68  E-value=7.3e-05  Score=71.36  Aligned_cols=61  Identities=26%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..++||+|||+|.+|.. |++.+.+|..||.++.+++.|++++.....     ..+ ++++..+.++.
T Consensus       298 ~~~VLDlgcGtG~~sl~-la~~~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v-~~~~~d~~~~l  358 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLP-LARQAAEVVGVEGVEAMVERARENARRNGL-----DNV-TFYHANLEEDF  358 (443)
T ss_pred             CCEEEEEeccCCHHHHH-HHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce-EEEEeChHHhh
Confidence            36899999999999987 566678999999999999999998754211     223 78888877653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.68  E-value=2.7e-05  Score=70.36  Aligned_cols=67  Identities=16%  Similarity=0.218  Sum_probs=52.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ...++||+|||.|-++.. |++....|+.+|.+++.++.|+..-.++.      -. .++-+...||..-. .+||
T Consensus        59 ~g~~vLDvGCGgG~Lse~-mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g------v~-i~y~~~~~edl~~~~~~FD  126 (243)
T COG2227          59 PGLRVLDVGCGGGILSEP-LARLGASVTGIDASEKPIEVAKLHALESG------VN-IDYRQATVEDLASAGGQFD  126 (243)
T ss_pred             CCCeEEEecCCccHhhHH-HHHCCCeeEEecCChHHHHHHHHhhhhcc------cc-ccchhhhHHHHHhcCCCcc
Confidence            346899999999999999 67777899999999999999997654421      11 26777778877755 5777

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.68  E-value=8e-05  Score=62.86  Aligned_cols=44  Identities=20%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.+|..+. +..  .+|.+||+++.|++.|++++..
T Consensus        41 ~~~VLDiG~G~G~~~~~la-~~~~~~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAG-LLCPKGRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHH-HHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            4689999999999998754 332  6999999999999999998754

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.68  E-value=0.00015  Score=60.56  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             cceeeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||.|.++..++.....  ++..+|+++.+++.+++++..       ..++ ++.+..+.++.. +..||
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i-~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNI-EFIQADAEALPFEDNSFD  108 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCc-eEEecchhcCCCCCCcEE
Confidence            3468999999999999987766653  899999999999999988741       1233 677777776542 23565

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK03612 spermidine synthase; Provisional

Probab=97.67  E-value=6.7e-05  Score=73.45  Aligned_cols=103  Identities=17%  Similarity=0.043  Sum_probs=66.1

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHH--
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES--  199 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~--  199 (232)
                      +|.|-.+.+..|-..-..+|.......     ..+..+|||+|+|.|-++..++.+-. .+|++||.++.+++.++++  
T Consensus       268 ~ldG~~q~s~~de~~y~e~l~~~~l~~-----~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~  342 (521)
T PRK03612        268 YLNGRLQFSSRDEYRYHEALVHPAMAA-----SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPA  342 (521)
T ss_pred             EECCEeeccCccHHHHHHHHHHHHHhh-----CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCc
Confidence            567766677777433344454422111     12346899999999999998775433 7999999999999999994  


Q ss_pred             hCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          200 LAPENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       200 l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      +.......-+..++ ++++....+|-.  .++||
T Consensus       343 l~~~~~~~~~dprv-~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        343 LRALNGGALDDPRV-TVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             chhhhccccCCCce-EEEEChHHHHHHhCCCCCC
Confidence            32211001123455 777777766642  34787

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.66  E-value=0.00012  Score=62.31  Aligned_cols=67  Identities=16%  Similarity=0.089  Sum_probs=47.7

Q ss_pred             eeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          160 VALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ++||+|||.|..+..+.... -.+|..+|+++.+++.|++++.....    ..++ ++++..+.+...+..||
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl----~~~i-~~~~~d~~~~~~~~~fD   69 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL----QGRI-RIFYRDSAKDPFPDTYD   69 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----Ccce-EEEecccccCCCCCCCC
Confidence            69999999999998755443 14899999999999999998754211    1333 66776664433234677

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.66  E-value=6.1e-05  Score=68.04  Aligned_cols=44  Identities=18%  Similarity=0.135  Sum_probs=38.4

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .++||+|||+|.++..++.....+|.+||.++.+++.|++++..
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~  204 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL  204 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence            68999999999999875544457999999999999999999855

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=8.7e-05  Score=65.24  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=52.6

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ...|||.|||+|+++...++-....|-.||+++..++.+++|....      ..+| +|++..+.+|..
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v-~f~~~dv~~~~~  107 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL------LGDV-EFVVADVSDFRG  107 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh------CCce-EEEEcchhhcCC
Confidence            3579999999999999977777799999999999999999998651      1344 899999998875

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.64  E-value=7.1e-05  Score=68.68  Aligned_cols=68  Identities=18%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++..+.... ..+|.+||.++.+++.|++++.....    ..+| ++++..+.++-|..+||
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l----~~~i-~~~~~D~~~~l~~~~fD  203 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL----EDRV-TLIESDLFAALPGRRYD  203 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCcE-EEEECchhhhCCCCCcc
Confidence            579999999999998855443 25999999999999999999854211    1344 77887776555544666

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.62  E-value=0.00011  Score=64.81  Aligned_cols=69  Identities=17%  Similarity=0.035  Sum_probs=48.0

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||.|..+..++....  .+|..||+++.+++.|+++......     .++ ++.+..++++.. +..||
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-----~~v-~~~~~d~~~l~~~~~~fD  148 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-----TNV-EFRLGEIEALPVADNSVD  148 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-----CCE-EEEEcchhhCCCCCCcee
Confidence            446999999999998875443332  3799999999999999998644211     233 566666766542 33565

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.60  E-value=0.00017  Score=68.12  Aligned_cols=44  Identities=23%  Similarity=0.184  Sum_probs=37.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ..++||+|||.|..+..+....-.+|+.||+++.+++.|++++.
T Consensus       168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~  211 (383)
T PRK11705        168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA  211 (383)
T ss_pred             CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc
Confidence            46899999999999987544444599999999999999999874

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.58  E-value=0.00026  Score=63.04  Aligned_cols=62  Identities=16%  Similarity=0.152  Sum_probs=49.6

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      ....|||+|+|.|.+|..| ++.+.+|.+||.++.|++.+++.+..       ..++ ++++..+-+|++.
T Consensus        30 ~~~~VlEiGpG~G~lT~~L-~~~~~~v~~vE~d~~~~~~L~~~~~~-------~~~~-~vi~~D~l~~~~~   91 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTREL-LKRGKRVIAVEIDPDLAKHLKERFAS-------NPNV-EVINGDFLKWDLY   91 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHH-HHHSSEEEEEESSHHHHHHHHHHCTT-------CSSE-EEEES-TTTSCGG
T ss_pred             CCCEEEEeCCCCccchhhH-hcccCcceeecCcHhHHHHHHHHhhh-------cccc-eeeecchhccccH
Confidence            3468999999999999985 55569999999999999999998753       2444 7788877777754

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK08317 hypothetical protein; Provisional

Probab=97.56  E-value=0.00023  Score=59.52  Aligned_cols=68  Identities=19%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      +..++||+|||.|..+..+....  ..+|..||+++.+++.++++....      ... .++.+..++++. ++..||
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~-~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPN-VEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCc-eEEEecccccCCCCCCCce
Confidence            34689999999999998865443  258999999999999999873221      122 266666666543 223565

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.56  E-value=0.00021  Score=62.45  Aligned_cols=71  Identities=10%  Similarity=-0.102  Sum_probs=48.1

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCC------C-CCCCCcceEEEecCCCccCC--CC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------A-PDMHKATNFFCVPLQVITNI--IQ  229 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~------~-~~~~rv~n~~~vgLQdF~Pe--~~  229 (232)
                      .+|||.|||.||.+..| +...-+|+.||.|+..++.|..........      . ....+| ++++..+-++.++  ..
T Consensus        36 ~rvLd~GCG~G~da~~L-A~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~D~~~~~~~~~~~  113 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWL-AEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI-EIFCGDFFALTAADLGP  113 (213)
T ss_pred             CeEEEeCCCchhHHHHH-HhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce-EEEEccCCCCCcccCCC
Confidence            58999999999999874 555558999999999999864321111000      0 011344 8889999887753  34


Q ss_pred             CC
Q 026812          230 YH  231 (232)
Q Consensus       230 YD  231 (232)
                      ||
T Consensus       114 fD  115 (213)
T TIGR03840       114 VD  115 (213)
T ss_pred             cC
Confidence            54

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.53  E-value=0.00013  Score=68.49  Aligned_cols=65  Identities=17%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|.++..++... ..+|++||+++.|++.|+++...        .++ ++.+..++++.. +..||
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~--------~~i-~~i~gD~e~lp~~~~sFD  180 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL--------KEC-KIIEGDAEDLPFPTDYAD  180 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc--------cCC-eEEeccHHhCCCCCCcee
Confidence            4689999999999998754432 25899999999999999987532        223 556666665432 23555

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.52  E-value=0.00021  Score=65.55  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      +..++||+|||+|.+|..+ ++...+|.+||.++.|++.+++++.....    ..++ ++++..+-++.
T Consensus        36 ~~~~VLEIG~G~G~LT~~L-l~~~~~V~avEiD~~li~~l~~~~~~~~~----~~~v-~ii~~Dal~~~   98 (294)
T PTZ00338         36 PTDTVLEIGPGTGNLTEKL-LQLAKKVIAIEIDPRMVAELKKRFQNSPL----ASKL-EVIEGDALKTE   98 (294)
T ss_pred             CcCEEEEecCchHHHHHHH-HHhCCcEEEEECCHHHHHHHHHHHHhcCC----CCcE-EEEECCHhhhc
Confidence            3468999999999999875 45578999999999999999998854210    1233 56666655443

>PRK04457 spermidine synthase; Provisional

Probab=97.52  E-value=0.00012  Score=65.66  Aligned_cols=69  Identities=12%  Similarity=0.056  Sum_probs=50.8

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      ..++||+|+|.|.+++.++... -.+|++||.++.+++.|++++....    ...++ ++++....+|-+.  .+||
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv-~v~~~Da~~~l~~~~~~yD  138 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE----NGERF-EVIEADGAEYIAVHRHSTD  138 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC----CCCce-EEEECCHHHHHHhCCCCCC
Confidence            3589999999999998755443 2589999999999999999985421    12455 7777776666432  3676

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.52  E-value=0.00016  Score=64.97  Aligned_cols=68  Identities=24%  Similarity=0.214  Sum_probs=48.5

Q ss_pred             eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++..+....- .+|.+||.++..++.|++|+.....    ..++ ++++..+-+..+..+||
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~----~~~v-~~~~~d~~~~~~~~~fD  184 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL----EHRV-EFIQSNLFEPLAGQKID  184 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECchhccCcCCCcc
Confidence            5899999999999988544332 4899999999999999998754211    1234 67776665543433565

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.51  E-value=0.00022  Score=62.39  Aligned_cols=45  Identities=29%  Similarity=0.307  Sum_probs=38.3

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +..++||+|||.|.++..++... ..+|.++|.++.+++.|++++.
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence            34589999999999998865443 2699999999999999999975

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00029  Score=62.46  Aligned_cols=88  Identities=18%  Similarity=0.188  Sum_probs=63.5

Q ss_pred             CcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC
Q 026812          128 GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA  207 (232)
Q Consensus       128 ~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~  207 (232)
                      ..||.+.+..  ..+..|..        .+..+|||||||+|=-| -+|+++..+|--||-.+.+++.|+++|....+  
T Consensus        53 qtis~P~~vA--~m~~~L~~--------~~g~~VLEIGtGsGY~a-Avla~l~~~V~siEr~~~L~~~A~~~L~~lg~--  119 (209)
T COG2518          53 QTISAPHMVA--RMLQLLEL--------KPGDRVLEIGTGSGYQA-AVLARLVGRVVSIERIEELAEQARRNLETLGY--  119 (209)
T ss_pred             ceecCcHHHH--HHHHHhCC--------CCCCeEEEECCCchHHH-HHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC--
Confidence            3477777543  33443333        34579999999999999 58999999999999999999999999976432  


Q ss_pred             CCCCCcceEEEecCCCccCCCCCC
Q 026812          208 PDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       208 ~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                         ..|.-++-=|-+-|.+...||
T Consensus       120 ---~nV~v~~gDG~~G~~~~aPyD  140 (209)
T COG2518         120 ---ENVTVRHGDGSKGWPEEAPYD  140 (209)
T ss_pred             ---CceEEEECCcccCCCCCCCcC
Confidence               224333444556666666887

>TIGR03438 probable methyltransferase

Probab=97.51  E-value=0.00011  Score=66.65  Aligned_cols=44  Identities=23%  Similarity=0.189  Sum_probs=38.3

Q ss_pred             eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .++||+|||+|+.|+.||...  ..+|..||.++.|++.|.+.+..
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~  110 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA  110 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence            579999999999999877665  36899999999999999988744

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.48  E-value=0.00017  Score=70.59  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=49.5

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++... ..+|.+||.++.+++.|++++.....    ..++ ++++..+-+..+..+||
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l----~~~v-~~~~~D~~~~~~~~~fD  208 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV----TDRI-QIIHSNWFENIEKQKFD  208 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC----ccce-eeeecchhhhCcCCCcc
Confidence            3589999999999998866553 35899999999999999999754211    1234 56666654433444565

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.48  E-value=0.00022  Score=56.30  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=33.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA  195 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~  195 (232)
                      ...++||+|||.|.+++.| .+...+|..||+++.+++.
T Consensus        22 ~~~~vLDiGcG~G~~~~~l-~~~~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRAL-AKRGFEVTGVDISPQMIEK   59 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHH-HHTTSEEEEEESSHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHH-HHhCCEEEEEECCHHHHhh
Confidence            4569999999999999875 6665699999999999987

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.47  E-value=0.00042  Score=62.89  Aligned_cols=69  Identities=16%  Similarity=0.144  Sum_probs=44.9

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .+..++||+|||-|..+..+..+.-.+|+.|..++.-.+.|++.+.....    .++| +|.+....++.+  +||
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl----~~~v-~v~~~D~~~~~~--~fD  129 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL----EDRV-EVRLQDYRDLPG--KFD  129 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----SSTE-EEEES-GGG-----S-S
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEEeeccccCC--CCC
Confidence            35579999999999999985555456999999999999999988765211    2344 677766666554  787

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.43  E-value=0.00018  Score=68.49  Aligned_cols=62  Identities=23%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .++||||||+|-++...+.....+|+.||.++.+++.|++|+.....   +..++ ++++..+-+|
T Consensus       222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl---~~~~v-~~i~~D~~~~  283 (396)
T PRK15128        222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL---DLSKA-EFVRDDVFKL  283 (396)
T ss_pred             CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCCcE-EEEEccHHHH
Confidence            58999999999999887776677999999999999999999865211   00133 6777776665

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.43  E-value=0.00019  Score=63.94  Aligned_cols=59  Identities=20%  Similarity=0.107  Sum_probs=45.1

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      .++||+|||+|.++..+.... ..+|.+||.++.+++.|++|+..        .++ ++++..+.++.+
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~--------~~~-~~~~~D~~~~l~  147 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD--------AGG-TVHEGDLYDALP  147 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH--------cCC-EEEEeechhhcc
Confidence            489999999999998754432 24899999999999999999854        122 567777665543

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.42  E-value=0.0006  Score=59.77  Aligned_cols=67  Identities=12%  Similarity=-0.078  Sum_probs=44.9

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCC-------CCCCCCcceEEEecCCCccCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM-------APDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~-------~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      .+|||.|||.||.+..| +...-+|++||+++..++.+...-+..+..       .....+| ++++..+-++.+.
T Consensus        39 ~rvL~~gCG~G~da~~L-A~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v-~~~~~D~~~l~~~  112 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWL-AEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI-TIYCGDFFALTAA  112 (218)
T ss_pred             CeEEEeCCCChHhHHHH-HhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce-EEEECcccCCCcc
Confidence            58999999999999875 555558999999999999874321111000       0012344 7777777776543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.41  E-value=0.00017  Score=66.53  Aligned_cols=44  Identities=23%  Similarity=0.160  Sum_probs=37.3

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .++||+|||+|-.+.--+.-...+|.++|.++.-++.|++|...
T Consensus       163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~  206 (295)
T PF06325_consen  163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAEL  206 (295)
T ss_dssp             SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHH
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHH
Confidence            58999999999999764444468999999999999999999865

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.40  E-value=0.00031  Score=65.33  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=37.5

Q ss_pred             ceeeeccCCccccchHHHHhhccC---eeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.+|.. |++.+.   +|..||.++.+++.|++++..
T Consensus        81 g~~VLDIG~GtG~~a~~-LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~  127 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAV-MSRVVGEKGLVVSVEYSRKICEIAKRNVRR  127 (322)
T ss_pred             CCEEEEEeCCccHHHHH-HHHhcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            46899999999999976 566553   599999999999999998754

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.35  E-value=0.00039  Score=66.54  Aligned_cols=68  Identities=9%  Similarity=-0.037  Sum_probs=50.6

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|..|..+....  ..+|.+||.++.+++.+++++.....     .. .++.+...+++.+...||
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-----~~-v~~~~~Da~~~~~~~~fD  320 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-----TI-IETIEGDARSFSPEEQPD  320 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-----Ce-EEEEeCcccccccCCCCC
Confidence            3689999999999997644322  35899999999999999999855211     12 267777777776655676

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.35  E-value=0.00019  Score=67.30  Aligned_cols=66  Identities=12%  Similarity=0.009  Sum_probs=50.8

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      .++||+|||+|.+|..+. ..+.+|..||.++..++.|++|+.....     ..+ +|++..+.+|.+.  .+||
T Consensus       235 ~~vLDL~cG~G~~~l~la-~~~~~v~~vE~~~~av~~a~~N~~~~~~-----~~~-~~~~~d~~~~~~~~~~~~D  302 (374)
T TIGR02085       235 TQMWDLFCGVGGFGLHCA-GPDTQLTGIEIESEAIACAQQSAQMLGL-----DNL-SFAALDSAKFATAQMSAPE  302 (374)
T ss_pred             CEEEEccCCccHHHHHHh-hcCCeEEEEECCHHHHHHHHHHHHHcCC-----CcE-EEEECCHHHHHHhcCCCCC
Confidence            489999999999998755 5568999999999999999999855211     233 7888888776542  2455

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.32  E-value=0.00028  Score=59.90  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      .++||+|||.|.++..++... -.+|..||+++.+++.|++++.....     ..| ++.+..+.+
T Consensus        18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-----~ni-~~i~~d~~~   77 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-----KNL-HVLCGDANE   77 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-----CCE-EEEccCHHH
Confidence            489999999999998865443 24899999999999999887654211     123 566666654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.30  E-value=0.00029  Score=71.36  Aligned_cols=69  Identities=9%  Similarity=0.002  Sum_probs=51.9

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      .++||||||+|.+|..++.....+|+.||.++.+++.|++|+.....   +..++ ++++...-+|-.  ..+||
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~---~~~~v-~~i~~D~~~~l~~~~~~fD  610 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGL---SGRQH-RLIQADCLAWLKEAREQFD  610 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---Cccce-EEEEccHHHHHHHcCCCcC
Confidence            58999999999999997766567899999999999999999865321   11244 777877655432  23666

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.30  E-value=0.00054  Score=60.97  Aligned_cols=63  Identities=16%  Similarity=0.060  Sum_probs=44.1

Q ss_pred             ceeeeccCCccccchHHHHhhcc----CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f----~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|..+..|....-    .+|..||+++.+++.|++....          + .+.+..++++.. +..||
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~----------~-~~~~~d~~~lp~~~~sfD  153 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQ----------V-TFCVASSHRLPFADQSLD  153 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCC----------C-eEEEeecccCCCcCCcee
Confidence            35799999999999987544321    2689999999999999876421          2 455556665432 23555

>PRK01581 speE spermidine synthase; Validated

Probab=97.27  E-value=0.0005  Score=65.59  Aligned_cols=103  Identities=18%  Similarity=0.100  Sum_probs=65.7

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHH--
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARES--  199 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~--  199 (232)
                      +|.|....+..|-.--...|.......     .....+||++|+|.|-+...+|... ..+|++||.++.+++.|+++  
T Consensus       121 ~LDG~~Q~se~DE~iYHE~Lvhp~m~~-----h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~  195 (374)
T PRK01581        121 YLDKQLQFSSVDEQIYHEALVHPIMSK-----VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPE  195 (374)
T ss_pred             EECCeeccccccHHHHHHHHHHHHHHh-----CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccc
Confidence            677888888888443344444432111     1234699999999999988866542 47999999999999999973  


Q ss_pred             hCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          200 LAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       200 l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      +.......-+..|+ ++++...-+|-+.  .+||
T Consensus       196 L~~~~~~~~~DpRV-~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        196 LVSLNKSAFFDNRV-NVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             cchhccccCCCCce-EEEECcHHHHHHhcCCCcc
Confidence            22111001123566 6666665566433  3677

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.26  E-value=0.00032  Score=65.61  Aligned_cols=59  Identities=20%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .++||++||+|.+|. .|++.+.+|..||.++.+++.|++|+.....     .++ +|++..+.+|
T Consensus       208 ~~vLDl~~G~G~~sl-~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-----~~v-~~~~~d~~~~  266 (362)
T PRK05031        208 GDLLELYCGNGNFTL-ALARNFRRVLATEISKPSVAAAQYNIAANGI-----DNV-QIIRMSAEEF  266 (362)
T ss_pred             CeEEEEeccccHHHH-HHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-----CcE-EEEECCHHHH
Confidence            469999999999998 4788899999999999999999999754211     123 5777776665

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.26  E-value=0.00019  Score=62.83  Aligned_cols=68  Identities=18%  Similarity=0.155  Sum_probs=46.4

Q ss_pred             cceeeeccCCccccchHHHHhhccC---eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEE-ecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~-vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|=.| .+|++++.   .|..||..+.+++.|++++.....     ..| .+.+ -+.+-|.+...||
T Consensus        72 pg~~VLeIGtGsGY~a-Alla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-----~nv-~~~~gdg~~g~~~~apfD  143 (209)
T PF01135_consen   72 PGDRVLEIGTGSGYQA-ALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-----DNV-EVVVGDGSEGWPEEAPFD  143 (209)
T ss_dssp             TT-EEEEES-TTSHHH-HHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-----HSE-EEEES-GGGTTGGG-SEE
T ss_pred             CCCEEEEecCCCcHHH-HHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-----Cce-eEEEcchhhccccCCCcC
Confidence            4579999999999999 47898864   578999999999999999975321     223 2333 3344454444676

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.24  E-value=0.00037  Score=65.97  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=47.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|.+|.. |++.+.+|..||.++.+++.|++|+.....     ..+ +|++..+.++
T Consensus       293 ~~~vLDl~cG~G~~sl~-la~~~~~V~~vE~~~~av~~a~~n~~~~~~-----~nv-~~~~~d~~~~  352 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLP-LAKQAKSVVGIEVVPESVEKAQQNAELNGI-----ANV-EFLAGTLETV  352 (431)
T ss_pred             CCEEEEcCCCcCHHHHH-HHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-----Cce-EEEeCCHHHH
Confidence            35899999999999987 677788999999999999999999854211     223 5677766554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.20  E-value=0.00091  Score=64.74  Aligned_cols=66  Identities=15%  Similarity=0.063  Sum_probs=47.9

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-C-CCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-N-IIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-P-e~~YD  231 (232)
                      .++||+|||+|.++..+.... ..+|.+||.++.+++.|++|+...      ..++ ++.+..+.+.. | ..+||
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~------g~rV-~fi~gDl~e~~l~~~~~FD  321 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL------GARV-EFAHGSWFDTDMPSEGKWD  321 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCcE-EEEEcchhccccccCCCcc
Confidence            489999999999998755443 368999999999999999998542      1234 67776664432 2 23565

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.00041  Score=63.12  Aligned_cols=42  Identities=31%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             eeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCC
Q 026812          160 VALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +|||+|||+|-++..+ +..+.  .|+++|.|+.-++.|++|...
T Consensus       113 ~ilDlGTGSG~iai~l-a~~~~~~~V~a~Dis~~Al~~A~~Na~~  156 (280)
T COG2890         113 RILDLGTGSGAIAIAL-AKEGPDAEVIAVDISPDALALARENAER  156 (280)
T ss_pred             cEEEecCChHHHHHHH-HhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence            7999999999999984 55554  999999999999999999865

>PRK04266 fibrillarin; Provisional

Probab=97.18  E-value=0.00091  Score=59.07  Aligned_cols=44  Identities=14%  Similarity=0.048  Sum_probs=36.4

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +..++||+|||+|.+|.. |++.+  .+|.+||.++.|++.+.++..
T Consensus        72 ~g~~VlD~G~G~G~~~~~-la~~v~~g~V~avD~~~~ml~~l~~~a~  117 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSH-VSDIVEEGVVYAVEFAPRPMRELLEVAE  117 (226)
T ss_pred             CCCEEEEEccCCCHHHHH-HHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence            346899999999999987 56655  489999999999998876653

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.16  E-value=0.00026  Score=66.12  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=47.2

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ++||+|||+|.+|. .|++.+.+|..||.++.+++.|++|+.....     ..+ .|++..+.+|.
T Consensus       200 ~vlDl~~G~G~~sl-~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-----~~v-~~~~~d~~~~~  258 (353)
T TIGR02143       200 DLLELYCGNGNFSL-ALAQNFRRVLATEIAKPSVNAAQYNIAANNI-----DNV-QIIRMSAEEFT  258 (353)
T ss_pred             cEEEEeccccHHHH-HHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CcE-EEEEcCHHHHH
Confidence            69999999999998 5888889999999999999999999855211     123 57777766654

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.14  E-value=0.00052  Score=61.72  Aligned_cols=67  Identities=21%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             eeeeccCCccccchHHHHh-hccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl-~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      .-+|++|||+|+-=+. +- .-.+.|+.+||+++|-+-|...+++..+     .++..|.....++..  ++..||
T Consensus        78 ~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~-----~~~~~fvva~ge~l~~l~d~s~D  147 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKP-----LQVERFVVADGENLPQLADGSYD  147 (252)
T ss_pred             cceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccC-----cceEEEEeechhcCcccccCCee
Confidence            4589999999998875 33 2356999999999999999888776433     456567777777766  566777

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.11  E-value=0.00086  Score=59.66  Aligned_cols=42  Identities=26%  Similarity=0.254  Sum_probs=34.1

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHH-HHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARE  198 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~-Are  198 (232)
                      ...++||+|||+|-+|..++.....+|.+||+++.++.. +++
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~  117 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ  117 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc
Confidence            345899999999999987665547899999999977764 444

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.11  E-value=0.0015  Score=62.31  Aligned_cols=61  Identities=15%  Similarity=0.044  Sum_probs=45.8

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|..|..++...  -.+|.+||.++.+++.+++++.....     ..| ++.+..+.++
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-----~~v-~~~~~D~~~~  313 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-----TNI-ETKALDARKV  313 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeE-EEEeCCcccc
Confidence            3589999999999998865543  36899999999999999999855211     122 5666666554

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.10  E-value=0.0011  Score=61.65  Aligned_cols=67  Identities=22%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             CCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       127 f~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      |+.=+..--..+-.+|.++..         +..++||+|||+|-.+.-.+.-....|-.+|.++.-++.|++|...
T Consensus       141 FGTG~HpTT~lcL~~Le~~~~---------~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~  207 (300)
T COG2264         141 FGTGTHPTTSLCLEALEKLLK---------KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL  207 (300)
T ss_pred             cCCCCChhHHHHHHHHHHhhc---------CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH
Confidence            554333333455566666544         2468999999999999987666678899999999999999999865

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.10  E-value=0.00096  Score=61.54  Aligned_cols=69  Identities=13%  Similarity=0.123  Sum_probs=49.1

Q ss_pred             CcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS  232 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD~  232 (232)
                      .+..++||+|||=|-.+.. +++.+ .+|+.|..|+...+.+++.+.....    ..+| ++.-.+..+|..  +||.
T Consensus        71 ~~G~~lLDiGCGWG~l~~~-aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl----~~~v-~v~l~d~rd~~e--~fDr  140 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIY-AAEEYGVTVVGVTLSEEQLAYAEKRIAARGL----EDNV-EVRLQDYRDFEE--PFDR  140 (283)
T ss_pred             CCCCEEEEeCCChhHHHHH-HHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC----Cccc-EEEecccccccc--ccce
Confidence            3457999999999999987 56665 8999999999999999997755211    1222 444444444443  4873

>PHA01634 hypothetical protein

Probab=97.09  E-value=0.00066  Score=57.08  Aligned_cols=44  Identities=18%  Similarity=0.018  Sum_probs=41.5

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+++||||+||--+..|+++..+.|-++||+++..+.+++++.-
T Consensus        30 KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         30 RTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             CEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence            58999999999999999999999999999999999999998754

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.08  E-value=0.0015  Score=62.18  Aligned_cols=67  Identities=19%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD  231 (232)
                      ..++||+|||+|..|..++...- .+|.++|.++.+++.+++++....      -.+ ++.+....+..   +...||
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g------~~~-~~~~~D~~~~~~~~~~~~fD  315 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG------LKA-TVIVGDARDPAQWWDGQPFD  315 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC------CCe-EEEEcCcccchhhcccCCCC
Confidence            46899999999999988655432 499999999999999999985521      123 56666665432   233566

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.07  E-value=0.0014  Score=62.80  Aligned_cols=68  Identities=9%  Similarity=-0.007  Sum_probs=48.5

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..+|||+|||+|..|.+++...  -.+|.++|.++++++.+++++.....     .. .++.+....++.  ....||
T Consensus       238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-----~~-v~~~~~Da~~l~~~~~~~fD  309 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-----SS-IEIKIADAERLTEYVQDTFD  309 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----Ce-EEEEECchhhhhhhhhccCC
Confidence            4589999999999998865443  35899999999999999999865211     11 256666655543  123565

>PLN03075 nicotianamine synthase; Provisional

Probab=97.07  E-value=0.002  Score=59.69  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=52.9

Q ss_pred             cceeeeccCCccccchHHHHhh-cc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIR-YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~-~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ...+|||+|||.|.+|--+|+. ++  .+|+-+|.++.+++.|++++...+.+   ..+| +|.+..+.+..+. .+||
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---~~rV-~F~~~Da~~~~~~l~~FD  197 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---SKRM-FFHTADVMDVTESLKEYD  197 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---cCCc-EEEECchhhcccccCCcC
Confidence            3468999999999888766663 44  47999999999999999998542221   2455 8888888776533 5787

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.03  E-value=0.0011  Score=60.36  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=39.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ...+|++|+|+|-+|+. |++..+.|.+||.++.+++.+++.+.
T Consensus        31 ~d~VlEIGpG~GaLT~~-Ll~~~~~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          31 GDNVLEIGPGLGALTEP-LLERAARVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             CCeEEEECCCCCHHHHH-HHhhcCeEEEEEeCHHHHHHHHHhcc
Confidence            57899999999999997 66778899999999999999999875

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.02  E-value=0.0022  Score=61.28  Aligned_cols=61  Identities=13%  Similarity=0.058  Sum_probs=45.1

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|..|..+....-  .+|.++|.++.+++.+++++.....     ..| .+.+....++
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-----~~v-~~~~~D~~~~  315 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-----KSI-KILAADSRNL  315 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-----CeE-EEEeCChhhc
Confidence            46899999999999987544332  4899999999999999999865211     122 5666666654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.02  E-value=0.00084  Score=57.50  Aligned_cols=62  Identities=19%  Similarity=0.022  Sum_probs=48.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||++||+|.++..++.+...+|++||.++..++.+++|+.....    ..++ ++++....+|
T Consensus        50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~----~~~~-~~~~~D~~~~  111 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS----GEQA-EVVRNSALRA  111 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC----cccE-EEEehhHHHH
Confidence            358999999999999998888778999999999999999998855211    1233 6777776544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=96.96  E-value=0.0019  Score=58.16  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=44.6

Q ss_pred             cceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      +..++||+|||.|.++..++.+.- -+|.++|. +.+++.+++++.....    .++| ++.+..+.+
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl----~~rv-~~~~~d~~~  210 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRM-RGIAVDIYK  210 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc----cceE-EEEecCccC
Confidence            346899999999999998665542 47999996 7899999988755221    2344 667766654

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.96  E-value=0.0013  Score=58.75  Aligned_cols=45  Identities=11%  Similarity=-0.057  Sum_probs=37.7

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|..|..+...+  -.+|.+||.++.+++.+++++..
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~  118 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR  118 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence            4689999999999998754433  24899999999999999999865

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.94  E-value=0.0014  Score=57.85  Aligned_cols=76  Identities=16%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~  214 (232)
                      ....||..|...       .+..++||+|+|+|-.|..|..-.  -.+|..+|.++++++.|+++++....    .++| 
T Consensus        55 ~~g~~L~~l~~~-------~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl----~~~i-  122 (234)
T PLN02781         55 DEGLFLSMLVKI-------MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV----DHKI-  122 (234)
T ss_pred             HHHHHHHHHHHH-------hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-
Confidence            346677666542       234689999999999887654433  35999999999999999999976432    2444 


Q ss_pred             eEEEecCCCc
Q 026812          215 NFFCVPLQVI  224 (232)
Q Consensus       215 n~~~vgLQdF  224 (232)
                      ++++....++
T Consensus       123 ~~~~gda~~~  132 (234)
T PLN02781        123 NFIQSDALSA  132 (234)
T ss_pred             EEEEccHHHH
Confidence            6666555443

>PLN02823 spermine synthase

Probab=96.90  E-value=0.0024  Score=59.87  Aligned_cols=103  Identities=13%  Similarity=0.036  Sum_probs=64.7

Q ss_pred             ccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHh
Q 026812          122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       122 GMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l  200 (232)
                      =+|.|..+.+..|-..=..+|..+.....     ....+||-+|+|.|.+++.+|... ..+|++||.++..++.|++++
T Consensus        73 L~lDg~~qs~~~de~~YhE~l~h~~l~~~-----~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~  147 (336)
T PLN02823         73 LIIDGKMQSAEADEFVYHESLVHPALLHH-----PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL  147 (336)
T ss_pred             EEECCccccccchHHHHHHHHHhHHHhhC-----CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc
Confidence            36777777666663322344444322111     234689999999999999887753 589999999999999999998


Q ss_pred             CCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          201 APENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       201 ~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      .... .+-+..|+ ++++..--+|-  ...+||
T Consensus       148 ~~~~-~~~~dprv-~v~~~Da~~~L~~~~~~yD  178 (336)
T PLN02823        148 TVNR-EAFCDKRL-ELIINDARAELEKRDEKFD  178 (336)
T ss_pred             cccc-ccccCCce-EEEEChhHHHHhhCCCCcc
Confidence            5311 01123555 55554333332  123566

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.81  E-value=0.002  Score=56.37  Aligned_cols=47  Identities=21%  Similarity=0.151  Sum_probs=39.3

Q ss_pred             CcceeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+.+|+|||+|.||..+..- -..+|.++|-+++.++..++|++.
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~   80 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR   80 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence            34579999999999999986521 247999999999999999998865

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.77  E-value=0.0047  Score=56.70  Aligned_cols=68  Identities=12%  Similarity=-0.163  Sum_probs=49.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||.|||+|.++.. ++....+|..+|.++.|++.|++|+.....     ..+ .+++..++++.. ...||
T Consensus       182 ~g~~vLDp~cGtG~~lie-aa~~~~~v~g~Di~~~~~~~a~~nl~~~g~-----~~i-~~~~~D~~~l~~~~~~~D  250 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIE-AGLMGAKVIGCDIDWKMVAGARINLEHYGI-----EDF-FVKRGDATKLPLSSESVD  250 (329)
T ss_pred             CcCEEEECCCCCCHHHHH-HHHhCCeEEEEcCCHHHHHHHHHHHHHhCC-----CCC-eEEecchhcCCcccCCCC
Confidence            345899999999999876 444567999999999999999999855211     112 567777766543 23555

This family is found exclusively in the Archaea.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.74  E-value=0.0017  Score=59.22  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~  199 (232)
                      ..++|+|||.| -|-..++.+|++|.++|+++.||+.|++.
T Consensus        35 ~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~   74 (261)
T KOG3010|consen   35 RLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKH   74 (261)
T ss_pred             ceEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence            38999999999 66667999999999999999999999874

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.74  E-value=0.0022  Score=59.82  Aligned_cols=47  Identities=17%  Similarity=0.056  Sum_probs=38.9

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPEN  204 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~  204 (232)
                      ...++||+|||.|-|.. +|+..  .-+|+++|.++..++.|++++...|
T Consensus       114 ~~~~vLDIGtGag~I~~-lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np  162 (321)
T PRK11727        114 ANVRVLDIGVGANCIYP-LIGVHEYGWRFVGSDIDPQALASAQAIISANP  162 (321)
T ss_pred             CCceEEEecCCccHHHH-HHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            44689999999998885 45443  2589999999999999999998764

>PRK06922 hypothetical protein; Provisional

Probab=96.73  E-value=0.0021  Score=65.35  Aligned_cols=43  Identities=12%  Similarity=0.149  Sum_probs=36.3

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ..++||+|||+|.++.. |++.+  .+|..||.++.|++.|++++.
T Consensus       419 g~rVLDIGCGTG~ls~~-LA~~~P~~kVtGIDIS~~MLe~Ararl~  463 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDM-IEEETEDKRIYGIDISENVIDTLKKKKQ  463 (677)
T ss_pred             CCEEEEeCCCCCHHHHH-HHHhCCCCEEEEEECCHHHHHHHHHHhh
Confidence            36899999999999975 55544  599999999999999998753

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.60  E-value=0.013  Score=52.19  Aligned_cols=110  Identities=21%  Similarity=0.263  Sum_probs=78.4

Q ss_pred             hhhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCc-ceeeeccCCccccchHHHHhhc
Q 026812          101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQ-HLVALDCGSGIGRITKNLLIRY  179 (232)
Q Consensus       101 ~~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~-~~rALDcGAGIGRVTk~lLl~~  179 (232)
                      .+-..|.+-..=|+.   +.|     ...+++.+-.-.+-||+++......    .. ..+++|+|+|-|==+.+|-+-.
T Consensus        22 ~~l~~Y~~lL~~wN~---~~N-----Lt~~~~~~e~~~rHilDSl~~~~~~----~~~~~~~~DIGSGaGfPGipLAI~~   89 (215)
T COG0357          22 EKLEAYVELLLKWNK---AYN-----LTAIRDPEELWQRHILDSLVLLPYL----DGKAKRVLDIGSGAGFPGIPLAIAF   89 (215)
T ss_pred             HHHHHHHHHHHHhhH---hcC-----CCCCCCHHHHHHHHHHHHhhhhhcc----cccCCEEEEeCCCCCCchhhHHHhc
Confidence            334568888888886   444     5556666545668888888653221    11 4699999999999888733111


Q ss_pred             -cCeeEEecCcHH---HHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCC-CC
Q 026812          180 -FNEVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQ-YH  231 (232)
Q Consensus       180 -f~~VDLVEPv~~---Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~-YD  231 (232)
                       -.+|++||+..+   |++.+.+.++-.        .+ .+++.-.++|.++.+ ||
T Consensus        90 p~~~vtLles~~Kk~~FL~~~~~eL~L~--------nv-~i~~~RaE~~~~~~~~~D  137 (215)
T COG0357          90 PDLKVTLLESLGKKIAFLREVKKELGLE--------NV-EIVHGRAEEFGQEKKQYD  137 (215)
T ss_pred             cCCcEEEEccCchHHHHHHHHHHHhCCC--------Ce-EEehhhHhhcccccccCc
Confidence             146999999975   999999888552        22 889999999998776 87

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.54  E-value=0.0074  Score=57.46  Aligned_cols=44  Identities=25%  Similarity=0.232  Sum_probs=37.9

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+|||+|||+|-.|..++ ...  .+|.++|.++++++.+++++..
T Consensus       239 g~~VLDlcag~G~kt~~la-~~~~~~~v~a~D~~~~~l~~~~~n~~r  284 (426)
T TIGR00563       239 EETILDACAAPGGKTTHIL-ELAPQAQVVALDIHEHRLKRVYENLKR  284 (426)
T ss_pred             CCeEEEeCCCccHHHHHHH-HHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            4689999999999998754 443  5999999999999999999865

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.51  E-value=0.0049  Score=57.60  Aligned_cols=56  Identities=21%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc--eEEEecCCCc
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT--NFFCVPLQVI  224 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~--n~~~vgLQdF  224 (232)
                      .+||.=||+|.+|.. |++.+.+|..||.++..++.|++|+..        .++.  +|++...++|
T Consensus       199 ~vlDlycG~G~fsl~-la~~~~~V~gvE~~~~av~~A~~Na~~--------N~i~n~~f~~~~~~~~  256 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLP-LAKKAKKVIGVEIVEEAVEDARENAKL--------NGIDNVEFIRGDAEDF  256 (352)
T ss_dssp             EEEEES-TTTCCHHH-HHCCSSEEEEEES-HHHHHHHHHHHHH--------TT--SEEEEE--SHHC
T ss_pred             cEEEEeecCCHHHHH-HHhhCCeEEEeeCCHHHHHHHHHHHHH--------cCCCcceEEEeeccch
Confidence            699999999999987 799999999999999999999999865        2333  5566555554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.51  E-value=0.0034  Score=54.82  Aligned_cols=47  Identities=26%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             CcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..-+|+.|+|+|-+|+.+|.+..  +.+.++|-+..|+..+.+....
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~   95 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG   95 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC
Confidence            3456899999999999999999986  7899999999999999886633

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.50  E-value=0.0028  Score=61.56  Aligned_cols=68  Identities=13%  Similarity=0.121  Sum_probs=47.9

Q ss_pred             ceeeeccCCccccchHHHHhhc------cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~------f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...|||+|||.|-++.- .++.      ..+|-+||-++..+..+++.+....|    .++| ++++..+++|.++++.|
T Consensus       187 ~~vVldVGAGrGpL~~~-al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w----~~~V-~vi~~d~r~v~lpekvD  260 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMF-ALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW----GDKV-TVIHGDMREVELPEKVD  260 (448)
T ss_dssp             T-EEEEES-TTSHHHHH-HHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT----TTTE-EEEES-TTTSCHSS-EE
T ss_pred             ceEEEEeCCCccHHHHH-HHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC----CCeE-EEEeCcccCCCCCCcee
Confidence            46899999999999853 3333      36999999999888777655433333    2555 99999999999877665

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.49  E-value=0.0052  Score=57.15  Aligned_cols=49  Identities=18%  Similarity=0.245  Sum_probs=42.6

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH  205 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~  205 (232)
                      +++..+|+||.|+|-.|.- |+...++|-++|.++.|+.++.+...+.|.
T Consensus        57 k~tD~VLEvGPGTGnLT~~-lLe~~kkVvA~E~Dprmvael~krv~gtp~  105 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVK-LLEAGKKVVAVEIDPRMVAELEKRVQGTPK  105 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHH-HHHhcCeEEEEecCcHHHHHHHHHhcCCCc
Confidence            4567999999999999987 556678999999999999999998877653

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.31  E-value=0.0071  Score=58.07  Aligned_cols=43  Identities=12%  Similarity=0.059  Sum_probs=36.3

Q ss_pred             eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+||+|||.|+++.. |+...  ..|..||..+.+++.|.+.+..
T Consensus       124 p~vLEIGcGsG~~ll~-lA~~~P~~~~iGIEI~~~~i~~a~~ka~~  168 (390)
T PRK14121        124 KILIEIGFGSGRHLLY-QAKNNPNKLFIGIEIHTPSIEQVLKQIEL  168 (390)
T ss_pred             CeEEEEcCcccHHHHH-HHHhCCCCCEEEEECCHHHHHHHHHHHHH
Confidence            4799999999999988 45543  5899999999999999877644

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.29  E-value=0.0025  Score=58.20  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=38.7

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are  198 (232)
                      ..+.++||+|||+|-.... |-.+.++++-||.|+.|+++|.+
T Consensus       124 g~F~~~lDLGCGTGL~G~~-lR~~a~~ltGvDiS~nMl~kA~e  165 (287)
T COG4976         124 GPFRRMLDLGCGTGLTGEA-LRDMADRLTGVDISENMLAKAHE  165 (287)
T ss_pred             CccceeeecccCcCcccHh-HHHHHhhccCCchhHHHHHHHHh
Confidence            3488999999999999987 78889999999999999999987

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.26  E-value=0.0079  Score=56.39  Aligned_cols=67  Identities=16%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHH---HHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~A---re~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...+|||+|||.|=.+-.|+....+.|-.+||+..|+-+.   ++.++..        ....+...++++.-....||
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~--------~~~~~lplgvE~Lp~~~~FD  184 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD--------PPVFELPLGVEDLPNLGAFD  184 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC--------ccEEEcCcchhhccccCCcC
Confidence            3469999999999999999988889999999999998874   3444321        11123335888776655777

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.25  E-value=0.0076  Score=52.23  Aligned_cols=33  Identities=12%  Similarity=0.134  Sum_probs=26.8

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVS  190 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~  190 (232)
                      ..++||+|||+|.+|..++....  .+|.+||+++
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            35899999999999987554432  5899999987

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=96.23  E-value=0.012  Score=52.89  Aligned_cols=43  Identities=14%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             cceeeeccCCcccc----chHHHHhhcc-------CeeEEecCcHHHHHHHHHHh
Q 026812          157 QHLVALDCGSGIGR----ITKNLLIRYF-------NEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       157 ~~~rALDcGAGIGR----VTk~lLl~~f-------~~VDLVEPv~~Fle~Are~l  200 (232)
                      +..+|||+|||+|-    ++.. |+..+       -+|.++|+++.+++.|++.+
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~-l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~  152 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAML-LAETLPKAREPDVKILATDIDLKALEKARAGI  152 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHH-HHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence            34799999999997    4433 22221       37999999999999999753

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.20  E-value=0.003  Score=52.93  Aligned_cols=36  Identities=14%  Similarity=0.009  Sum_probs=28.3

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHF  192 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~F  192 (232)
                      +..++||+|||+|.+|..++....  .+|.+||+++.+
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~   69 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK   69 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence            456899999999999987554432  369999999854

>PRK04148 hypothetical protein; Provisional

Probab=96.10  E-value=0.0099  Score=49.35  Aligned_cols=40  Identities=15%  Similarity=0.127  Sum_probs=35.3

Q ss_pred             eeeeccCCcccc-chHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812          159 LVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       159 ~rALDcGAGIGR-VTk~lLl~~f~~VDLVEPv~~Fle~Are~  199 (232)
                      .++||+|+|.|. |+.. |.+...+|.+||.++..++.|+++
T Consensus        18 ~kileIG~GfG~~vA~~-L~~~G~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148         18 KKIVELGIGFYFKVAKK-LKESGFDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             CEEEEEEecCCHHHHHH-HHHCCCEEEEEECCHHHHHHHHHh
Confidence            589999999995 9976 667777999999999999999885

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=96.01  E-value=0.015  Score=53.77  Aligned_cols=59  Identities=15%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..+|||+||-|.-|..+|...-  .+|..+|.++.+++.|++.+..       ..++ .+++..+.+|.
T Consensus        21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri-~~i~~~f~~l~   81 (296)
T PRK00050         21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRF-TLVHGNFSNLK   81 (296)
T ss_pred             CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcE-EEEeCCHHHHH
Confidence            5899999999999998776642  5899999999999999988743       1355 77888877764

>PLN02672 methionine S-methyltransferase

Probab=95.98  E-value=0.0072  Score=64.49  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=57.0

Q ss_pred             ccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCC--
Q 026812          130 VNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM--  206 (232)
Q Consensus       130 vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~--  206 (232)
                      |++.   .+..|+..|...+  . ..-+..++||+|||+|.++..+....- .+|.+||.++..++.|++|+......  
T Consensus        97 IPRp---eTE~lve~L~~~~--~-~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~  170 (1082)
T PLN02672         97 IPED---WSFTFYEGLNRHP--D-SIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDD  170 (1082)
T ss_pred             cCch---hHHHHHHHHHhcc--c-ccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccc
Confidence            4554   4666666643211  0 001235899999999999987544432 58999999999999999998542100  


Q ss_pred             C---------CCCCCcceEEEecCCCccC
Q 026812          207 A---------PDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       207 ~---------~~~~rv~n~~~vgLQdF~P  226 (232)
                      +         ....+| +|++..+-+..+
T Consensus       171 ~~~~~~~~~~~l~~rV-~f~~sDl~~~~~  198 (1082)
T PLN02672        171 GLPVYDGEGKTLLDRV-EFYESDLLGYCR  198 (1082)
T ss_pred             cccccccccccccccE-EEEECchhhhcc
Confidence            0         001345 788888765443

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=95.94  E-value=0.024  Score=52.48  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             cceeeeccCCccccchHHHHhhcc-------CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-C
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-I  228 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f-------~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~  228 (232)
                      ...++||+++|+|=+|-.+|-+.-       .+|+++|++++||.++++.....+.-   ..+...+.|..-++...+ .
T Consensus       100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~~~dAE~LpFdd~  176 (296)
T KOG1540|consen  100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWVEGDAEDLPFDDD  176 (296)
T ss_pred             CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEEeCCcccCCCCCC
Confidence            347999999999999998777663       57999999999999998765333321   122225666566665533 2


Q ss_pred             CCC
Q 026812          229 QYH  231 (232)
Q Consensus       229 ~YD  231 (232)
                      .||
T Consensus       177 s~D  179 (296)
T KOG1540|consen  177 SFD  179 (296)
T ss_pred             cce
Confidence            444

>PLN02476 O-methyltransferase

Probab=95.90  E-value=0.015  Score=53.37  Aligned_cols=73  Identities=16%  Similarity=0.054  Sum_probs=51.2

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~  214 (232)
                      ....||..|...       .+..++||+|+|+|-.|..|..-.  -.+|..+|.++++.+.|+++++....    .++| 
T Consensus       105 ~~g~lL~~L~~~-------~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl----~~~I-  172 (278)
T PLN02476        105 DQAQLLAMLVQI-------LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV----SHKV-  172 (278)
T ss_pred             HHHHHHHHHHHh-------cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-
Confidence            345666665542       234689999999999998754422  24799999999999999999976432    2455 


Q ss_pred             eEEEecC
Q 026812          215 NFFCVPL  221 (232)
Q Consensus       215 n~~~vgL  221 (232)
                      ++..-..
T Consensus       173 ~li~GdA  179 (278)
T PLN02476        173 NVKHGLA  179 (278)
T ss_pred             EEEEcCH
Confidence            5555443

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.76  E-value=0.0082  Score=57.06  Aligned_cols=67  Identities=12%  Similarity=0.109  Sum_probs=48.0

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      .++||++||+|-++..+.... ..+|.++|.++..++.+++|+.....     ..+ ++++....++-+ ..+||
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-----~~~-~v~~~Da~~~l~~~~~fD  127 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-----ENE-KVFNKDANALLHEERKFD  127 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----Cce-EEEhhhHHHHHhhcCCCC
Confidence            479999999999998865443 35899999999999999999854211     111 467776655433 33565

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=95.71  E-value=0.021  Score=50.21  Aligned_cols=41  Identities=20%  Similarity=0.017  Sum_probs=33.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are  198 (232)
                      ..||||+|||-|..-..|....--++--||.++.-+..+.+
T Consensus        14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~   54 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA   54 (193)
T ss_pred             CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH
Confidence            47999999999999987555455577889999998887766

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.66  E-value=0.025  Score=51.99  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC--CCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII--QYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~--~YD  231 (232)
                      ..+||=+|-|-|..++.+|.+. .++|++||.++..++.+++++.... .+.+..|+ ++....-.+|-...  +||
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~-~~~~dpRv-~i~i~Dg~~~v~~~~~~fD  151 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPS-GGADDPRV-EIIIDDGVEFLRDCEEKFD  151 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcc-cccCCCce-EEEeccHHHHHHhCCCcCC
Confidence            3599999999999999988776 5999999999999999999996633 22334565 55555544454322  565

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.64  E-value=0.05  Score=48.57  Aligned_cols=67  Identities=9%  Similarity=-0.088  Sum_probs=48.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC-------CCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-------PDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~-------~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..|||+.|||-|+....|..+.+ +|..||.++.-++.+.+.....+.+.       -....| +++|..+=++.+
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~~gD~f~l~~  117 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI-EIYVADIFNLPK  117 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce-EEEEccCcCCCc
Confidence            35999999999999998666666 79999999999999866322111000       011344 889999988865

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.56  E-value=0.0074  Score=54.68  Aligned_cols=75  Identities=25%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             ccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHH
Q 026812          117 EASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA  196 (232)
Q Consensus       117 eaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~A  196 (232)
                      ..++||||| ++.+--   -.-..|-+-|.+++..  -...+.+.||+|||-|-||+. +++.|++|=+-|.+..|.+.+
T Consensus        78 ~TdING~lg-rGsMFi---fSe~QF~klL~i~~p~--w~~~~~~lLDlGAGdGeit~~-m~p~feevyATElS~tMr~rL  150 (288)
T KOG3987|consen   78 QTDINGFLG-RGSMFI---FSEEQFRKLLVIGGPA--WGQEPVTLLDLGAGDGEITLR-MAPTFEEVYATELSWTMRDRL  150 (288)
T ss_pred             hhccccccc-cCceEE---ecHHHHHHHHhcCCCc--cCCCCeeEEeccCCCcchhhh-hcchHHHHHHHHhhHHHHHHH
Confidence            357899996 343211   1123455555554322  123457999999999999997 689999999999999999988


Q ss_pred             HH
Q 026812          197 RE  198 (232)
Q Consensus       197 re  198 (232)
                      +.
T Consensus       151 ~k  152 (288)
T KOG3987|consen  151 KK  152 (288)
T ss_pred             hh
Confidence            75

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=95.55  E-value=0.018  Score=49.36  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=38.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+=||+|.++...|++.+.+|..||.+.+-+..+++|+..
T Consensus        43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~   87 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEK   87 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999865

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=95.46  E-value=0.025  Score=49.46  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=45.9

Q ss_pred             ceeeeccCCccccchHHHHh-hccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl-~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...+||.-||||-.|.+++. .....|-++|.++.-++-+++++.....    .++| .+++....+|.+...+|
T Consensus       102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv----~~~i-~~~~~D~~~~~~~~~~d  171 (200)
T PF02475_consen  102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV----ENRI-EVINGDAREFLPEGKFD  171 (200)
T ss_dssp             T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-----TTTE-EEEES-GGG---TT-EE
T ss_pred             ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC----CCeE-EEEcCCHHHhcCccccC
Confidence            46899999999999998554 1578999999999999999999866432    2333 66777777776644444

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.38  E-value=0.023  Score=49.67  Aligned_cols=72  Identities=17%  Similarity=0.078  Sum_probs=51.1

Q ss_pred             HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      ..||..|...       .+..+||++|+++|--|..|...+  -.+|+.||+++.+.+.|++++.....    .++| ++
T Consensus        34 g~lL~~l~~~-------~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~----~~~I-~~  101 (205)
T PF01596_consen   34 GQLLQMLVRL-------TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL----DDRI-EV  101 (205)
T ss_dssp             HHHHHHHHHH-------HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG----GGGE-EE
T ss_pred             HHHHHHHHHh-------cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC----CCcE-EE
Confidence            4677766541       234689999999999998865443  25999999999999999999876322    2455 56


Q ss_pred             EEecCC
Q 026812          217 FCVPLQ  222 (232)
Q Consensus       217 ~~vgLQ  222 (232)
                      ....-.
T Consensus       102 ~~gda~  107 (205)
T PF01596_consen  102 IEGDAL  107 (205)
T ss_dssp             EES-HH
T ss_pred             EEeccH
Confidence            555433

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.09  E-value=0.044  Score=50.18  Aligned_cols=47  Identities=28%  Similarity=0.314  Sum_probs=39.5

Q ss_pred             CcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..||||.|.|.|-.|-.|+--+.  .+|..+|.-+.|.+.|++|+..
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~  141 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE  141 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH
Confidence            4567999999999999976443232  6999999999999999999966

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.07  E-value=0.024  Score=50.57  Aligned_cols=75  Identities=20%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|-..+++.|-......|..+.....     ....+||=+|.|-|.++..+|..- ..+||+||.++..++.|++++.
T Consensus        47 ~ldg~~q~~e~de~~y~e~l~h~~~~~~-----~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~  121 (246)
T PF01564_consen   47 VLDGDVQLSERDEFIYHEMLVHPPLLLH-----PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFP  121 (246)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHHHS-----SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTH
T ss_pred             EECCeEEEEEechHHHHHHHhhhHhhcC-----CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhch
Confidence            4667677788886666666766543211     245799999999999999866443 4899999999999999999875


Q ss_pred             C
Q 026812          202 P  202 (232)
Q Consensus       202 ~  202 (232)
                      .
T Consensus       122 ~  122 (246)
T PF01564_consen  122 E  122 (246)
T ss_dssp             H
T ss_pred             h
Confidence            3

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.05  E-value=0.073  Score=46.88  Aligned_cols=70  Identities=14%  Similarity=0.018  Sum_probs=47.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCC-------CCCCCcceEEEecCCCccCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-------PDMHKATNFFCVPLQVITNII  228 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~-------~~~~rv~n~~~vgLQdF~Pe~  228 (232)
                      +..+||.-|||-|.....|..+.+ +|..||.++.-++.+.+.-...+...       ....+| +|+|..+=++.++.
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i-~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI-TIYCGDFFELPPED  113 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE-EEEES-TTTGGGSC
T ss_pred             CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce-EEEEcccccCChhh
Confidence            346899999999999987655555 99999999999999843221111100       012344 88999998888765

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.00  E-value=0.027  Score=50.96  Aligned_cols=60  Identities=20%  Similarity=0.144  Sum_probs=42.5

Q ss_pred             HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhCCC
Q 026812          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPE  203 (232)
Q Consensus       139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~~~  203 (232)
                      ..-|.+|......    -.+.++||+|||+|..+-. +...   ..++.+||+++.|++.++..+...
T Consensus        19 ~~vl~El~~r~p~----f~P~~vLD~GsGpGta~wA-a~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   19 YRVLSELRKRLPD----FRPRSVLDFGSGPGTALWA-AREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             HHHHHHHHHhCcC----CCCceEEEecCChHHHHHH-HHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            4456666553211    2345899999999987754 2333   478999999999999998876553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=94.97  E-value=0.072  Score=47.55  Aligned_cols=61  Identities=21%  Similarity=0.221  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCC
Q 026812          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPE  203 (232)
Q Consensus       136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~  203 (232)
                      ...-.||..|...       .+..++|++|.++|=-|..|+...-  .++..+|.++++.+.|++|++..
T Consensus        45 ~e~g~~L~~L~~~-------~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a  107 (219)
T COG4122          45 PETGALLRLLARL-------SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA  107 (219)
T ss_pred             hhHHHHHHHHHHh-------cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence            5677888887663       2457899999999999988766654  47999999999999999999774

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=94.93  E-value=0.041  Score=50.17  Aligned_cols=41  Identities=22%  Similarity=0.136  Sum_probs=34.1

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are  198 (232)
                      ...-+||||||+|-.+.- |..---...-||.++.|+++|.+
T Consensus        50 ~~~~iLDIGCGsGLSg~v-L~~~Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSV-LSDSGHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             CCcEEEEeccCCCcchhe-eccCCceEEeecCCHHHHHHHHH
Confidence            346899999999999976 44444688899999999999984

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=94.92  E-value=0.039  Score=52.43  Aligned_cols=69  Identities=17%  Similarity=0.129  Sum_probs=47.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      +...+||+|||+|-++.--......+|-+||-+.-. +.|.+.+.....     ..|.+++..-++|.. |.++.|
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVD  129 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVD  129 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCc-----cceEEEeecceEEEecCcccee
Confidence            346899999999999964333346899999988755 888876644221     334577777777766 324554

>PTZ00146 fibrillarin; Provisional

Probab=94.85  E-value=0.05  Score=50.51  Aligned_cols=39  Identities=13%  Similarity=-0.018  Sum_probs=30.6

Q ss_pred             ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAAR  197 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Ar  197 (232)
                      ..+|||+|||+|..|.++ +..+   ..|-+||.++.+++.+.
T Consensus       133 G~~VLDLGaG~G~~t~~l-AdiVG~~G~VyAVD~s~r~~~dLl  174 (293)
T PTZ00146        133 GSKVLYLGAASGTTVSHV-SDLVGPEGVVYAVEFSHRSGRDLT  174 (293)
T ss_pred             CCEEEEeCCcCCHHHHHH-HHHhCCCCEEEEEECcHHHHHHHH
Confidence            368999999999999884 5554   57999999987554443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=94.72  E-value=0.13  Score=44.48  Aligned_cols=108  Identities=19%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             hhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-Ce
Q 026812          104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NE  182 (232)
Q Consensus       104 ~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~  182 (232)
                      ..|.+-..-|+..   +|     ...+...+---.+-|+++|..-..-+.   ...+++|+|+|-|==+..|-+-+= -+
T Consensus         6 ~~y~~lL~~~N~~---~N-----Lt~~~~~~~~~~~Hi~DSL~~~~~~~~---~~~~~lDiGSGaGfPGipLaI~~p~~~   74 (184)
T PF02527_consen    6 EQYLELLLEWNKK---IN-----LTSIRDPEEIWERHILDSLALLPFLPD---FGKKVLDIGSGAGFPGIPLAIARPDLQ   74 (184)
T ss_dssp             HHHHHHHHHHHHC---SS-----S-S--SHHHHHHHHHHHHHGGGGCS-C---CCSEEEEETSTTTTTHHHHHHH-TTSE
T ss_pred             HHHHHHHHHhCce---ee-----eccCCCHHHHHHHHHHHHHHhhhhhcc---CCceEEecCCCCCChhHHHHHhCCCCc
Confidence            3466666666652   33     333445554566888888865333221   112799999999998876443332 47


Q ss_pred             eEEecCcHH---HHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          183 VDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       183 VDLVEPv~~---Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      |+|||++.+   |++.+...++-        ..+ ++++.-.++......||
T Consensus        75 ~~LvEs~~KK~~FL~~~~~~L~L--------~nv-~v~~~R~E~~~~~~~fd  117 (184)
T PF02527_consen   75 VTLVESVGKKVAFLKEVVRELGL--------SNV-EVINGRAEEPEYRESFD  117 (184)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHT---------SSE-EEEES-HHHTTTTT-EE
T ss_pred             EEEEeCCchHHHHHHHHHHHhCC--------CCE-EEEEeeecccccCCCcc
Confidence            999999986   77777777644        223 77888887733334554

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=94.51  E-value=0.046  Score=49.28  Aligned_cols=71  Identities=14%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~  214 (232)
                      ....||..|...       .+..+||++|.++|--|..|..-.  -.+|..+|.++.+.+.|++++.....    .++| 
T Consensus        66 ~~g~lL~~l~~~-------~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~----~~~I-  133 (247)
T PLN02589         66 DEGQFLNMLLKL-------INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV----AHKI-  133 (247)
T ss_pred             HHHHHHHHHHHH-------hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCce-
Confidence            345777776552       234689999999999998754332  24899999999999999999976433    2565 


Q ss_pred             eEEEe
Q 026812          215 NFFCV  219 (232)
Q Consensus       215 n~~~v  219 (232)
                      ++.+-
T Consensus       134 ~~~~G  138 (247)
T PLN02589        134 DFREG  138 (247)
T ss_pred             EEEec
Confidence            55444

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.50  E-value=0.027  Score=50.88  Aligned_cols=61  Identities=18%  Similarity=0.192  Sum_probs=42.8

Q ss_pred             CcceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ  222 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQ  222 (232)
                      .+..+||++|.|.|-.|.. |++..   -+|.-.|..+.|.+.|++++...-.     .....+++-.+.
T Consensus        39 ~pG~~VlEaGtGSG~lt~~-l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~  102 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHA-LARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVC  102 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHH-HHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GG
T ss_pred             CCCCEEEEecCCcHHHHHH-HHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEeccee
Confidence            3457999999999999976 55543   5999999999999999999876321     233466666663

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=94.47  E-value=0.049  Score=46.51  Aligned_cols=59  Identities=20%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .+||+-||+|--|.. +++.|++|.+||.++.-++.|+.|..-.-    -.++| ++++...-++
T Consensus         2 ~vlD~fcG~GGNtIq-FA~~~~~Viaidid~~~~~~a~hNa~vYG----v~~~I-~~i~gD~~~~   60 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQ-FARTFDRVIAIDIDPERLECAKHNAEVYG----VADNI-DFICGDFFEL   60 (163)
T ss_dssp             EEEETT-TTSHHHHH-HHHTT-EEEEEES-HHHHHHHHHHHHHTT-----GGGE-EEEES-HHHH
T ss_pred             EEEEeccCcCHHHHH-HHHhCCeEEEEECCHHHHHHHHHHHHHcC----CCCcE-EEEeCCHHHH
Confidence            589999999999998 67889999999999999999999875421    12455 6666554443

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=94.38  E-value=0.061  Score=43.55  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=37.3

Q ss_pred             CcceeeeccCCccccchHHHHh-----hccCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl-----~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+++|+|||-|-+|..|..     ..--+|..||.++.+++.+.+....
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~   75 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK   75 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence            4557899999999999976444     2346999999999999998876533

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=94.13  E-value=0.09  Score=44.19  Aligned_cols=45  Identities=18%  Similarity=0.153  Sum_probs=34.2

Q ss_pred             CcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+|||+|||+|-++.- ++..  ..+|.+-|..+ .++.++.|+..
T Consensus        44 ~~~~~VLELGaG~Gl~gi~-~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~   90 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIA-AAKLFGAARVVLTDYNE-VLELLRRNIEL   90 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHH-HHHT-T-SEEEEEE-S--HHHHHHHHHHT
T ss_pred             cCCceEEEECCccchhHHH-HHhccCCceEEEeccch-hhHHHHHHHHh
Confidence            3456999999999999975 5666  68999999999 89999998855

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=94.00  E-value=0.067  Score=50.08  Aligned_cols=45  Identities=27%  Similarity=0.318  Sum_probs=39.4

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ...+||.|||.|-++..||..+- ..|++||.++.-+..|.||...
T Consensus       149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr  194 (328)
T KOG2904|consen  149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR  194 (328)
T ss_pred             cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH
Confidence            34799999999999999887764 6899999999999999998754

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=93.88  E-value=0.065  Score=47.34  Aligned_cols=45  Identities=18%  Similarity=0.308  Sum_probs=36.6

Q ss_pred             ceeeeccCCccccchHHHHhhcc---------CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f---------~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+++++|||.|+.++.+|.-+.         -++.+||+++.+.+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            47999999999999999876553         2699999999999999998866

; PDB: 4F3N_A 1ZKD_B.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=93.85  E-value=0.096  Score=41.41  Aligned_cols=54  Identities=22%  Similarity=0.310  Sum_probs=32.8

Q ss_pred             ccCCccc--cchHHHHhh-c--cCeeEEecCcHHHHHHHHHH--hCCCCCCCCCCCCcceEEEecC
Q 026812          163 DCGSGIG--RITKNLLIR-Y--FNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPL  221 (232)
Q Consensus       163 DcGAGIG--RVTk~lLl~-~--f~~VDLVEPv~~Fle~Are~--l~~~~~~~~~~~rv~n~~~vgL  221 (232)
                      ||||.+|  ..+..++.. .  -.+|-++||++..++.++.+  ++-+..    ... .+++..++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~----~~~-~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDK----DGE-VEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTT----STT-GGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCC----Cce-EEEEEeec
Confidence            8999999  666665532 2  36899999999999999998  433211    122 37777665

; PDB: 2PY6_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=93.75  E-value=0.097  Score=36.59  Aligned_cols=38  Identities=34%  Similarity=0.417  Sum_probs=30.1

Q ss_pred             eeccCCccccchHHHHhhccC---eeEEecCcHHHHHHHHHHh
Q 026812          161 ALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       161 ALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~Are~l  200 (232)
                      +||+|||+|+.+  ++.+...   .|..+|+++.++..++...
T Consensus        52 ~ld~~~g~g~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (257)
T COG0500          52 VLDIGCGTGRLA--LLARLGGRGAYVVGVDLSPEMLALARARA   92 (257)
T ss_pred             eEEecCCcCHHH--HHHHhCCCCceEEEEeCCHHHHHHHHhhh
Confidence            999999999987  4555543   6777999999999865543

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=93.64  E-value=0.12  Score=49.97  Aligned_cols=66  Identities=20%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQ  229 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~  229 (232)
                      ....+||+|||.|-++- |-++- .++|=+||.++ |.+-|+..+++...    .+|| .++.--++|...+++
T Consensus       177 ~~kiVlDVGaGSGILS~-FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~----~~rI-tVI~GKiEdieLPEk  243 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSF-FAAQAGAKKVYAVEASE-MAQYARKLVASNNL----ADRI-TVIPGKIEDIELPEK  243 (517)
T ss_pred             CCcEEEEecCCccHHHH-HHHHhCcceEEEEehhH-HHHHHHHHHhcCCc----cceE-EEccCccccccCchh
Confidence            34589999999999994 44443 68999999874 88999988876543    3666 666666777664444

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.59  E-value=0.076  Score=51.53  Aligned_cols=64  Identities=20%  Similarity=0.200  Sum_probs=51.1

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      +..++||.=||+|.+|.. |++.+.+|..||.++..++.|++|.+....     .. ..|..-..++|.+.
T Consensus       293 ~~~~vlDlYCGvG~f~l~-lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-----~N-~~f~~~~ae~~~~~  356 (432)
T COG2265         293 GGERVLDLYCGVGTFGLP-LAKRVKKVHGVEISPEAVEAAQENAAANGI-----DN-VEFIAGDAEEFTPA  356 (432)
T ss_pred             CCCEEEEeccCCChhhhh-hcccCCEEEEEecCHHHHHHHHHHHHHcCC-----Cc-EEEEeCCHHHHhhh
Confidence            446899999999999987 888999999999999999999999866221     12 26666667776654

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=93.42  E-value=0.16  Score=44.48  Aligned_cols=59  Identities=20%  Similarity=0.175  Sum_probs=37.1

Q ss_pred             cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHH
Q 026812          133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~  199 (232)
                      +.......+|..+..        .+...-+|+|||+|++....-+. .|.++--||..+...+.|++.
T Consensus        26 i~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~   85 (205)
T PF08123_consen   26 ISPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEEL   85 (205)
T ss_dssp             CHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHH
Confidence            333444555555432        34568999999999998654433 367899999999999888653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=93.25  E-value=0.059  Score=51.30  Aligned_cols=61  Identities=8%  Similarity=-0.061  Sum_probs=47.0

Q ss_pred             eeeeccCCccccchHHHHhh--ccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          159 LVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~--~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      .++||+-||+|-.+...+..  .+++|.++|.++.-++.+++|+.....     ..+ .+++.....+-
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-----~~~-~v~~~Da~~~l  108 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-----ENI-EVPNEDAANVL  108 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcE-EEEchhHHHHH
Confidence            47999999999999998876  468999999999999999999855210     112 56666655443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=92.96  E-value=0.12  Score=47.60  Aligned_cols=61  Identities=11%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      .+..|+|+|||.|-|+.+++.....++.++|-+-.|++.++..-  .       ..|...|-++=++|-+
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q--d-------p~i~~~~~v~DEE~Ld  132 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ--D-------PSIETSYFVGDEEFLD  132 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC--C-------CceEEEEEecchhccc
Confidence            34579999999999999999888999999999999999987632  1       3455667677666654

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.47  E-value=0.18  Score=44.76  Aligned_cols=43  Identities=19%  Similarity=0.187  Sum_probs=34.9

Q ss_pred             ceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ..-+||+|||.|-||. +|++.   ....-+.|.|+.-++.-++...
T Consensus        44 ~~i~lEIG~GSGvvst-fL~~~i~~~~~~latDiNp~A~~~Tl~TA~   89 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVST-FLASVIGPQALYLATDINPEALEATLETAR   89 (209)
T ss_pred             ceeEEEecCCcchHHH-HHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence            4679999999999995 57766   3567899999999998776553

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=91.74  E-value=0.2  Score=43.97  Aligned_cols=64  Identities=17%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             eeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812          161 ALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII  228 (232)
Q Consensus       161 ALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~  228 (232)
                      +.||||--|-+...|+.+. +.+|-++|.++.=++.|++++.....    .++|.....-||+.+.|.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l----~~~i~~rlgdGL~~l~~~e   65 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL----EDRIEVRLGDGLEVLKPGE   65 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEEEEE-SGGGG--GGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----cccEEEEECCcccccCCCC
Confidence            5799999999999977775 57899999999999999999876322    3678777777899888754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK00536 speE spermidine synthase; Provisional

Probab=91.34  E-value=0.25  Score=45.11  Aligned_cols=71  Identities=13%  Similarity=0.034  Sum_probs=50.7

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+.+||=+|.|=|-+.+.+|.+- .+||+||.++..++.+++++.... .+-+..|+ +++. .+.+ ...++||
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv-~l~~-~~~~-~~~~~fD  141 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFH-EVKNNKNF-THAK-QLLD-LDIKKYD  141 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHH-HhhcCCCE-EEee-hhhh-ccCCcCC
Confidence            455799999999999999977664 699999999999999999775421 12345676 5554 2222 1234777

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=91.21  E-value=0.32  Score=42.08  Aligned_cols=53  Identities=17%  Similarity=0.294  Sum_probs=37.5

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ  222 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQ  222 (232)
                      +..++||+|+|.|..+..++..+ --++.++|. +..++.+++   .        +|| ++....+-
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~--------~rv-~~~~gd~f  153 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A--------DRV-EFVPGDFF  153 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T--------TTE-EEEES-TT
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c--------ccc-ccccccHH
Confidence            34589999999999999976654 247888888 778888887   2        455 66666554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK10742 putative methyltransferase; Provisional

Probab=89.68  E-value=0.5  Score=43.17  Aligned_cols=42  Identities=24%  Similarity=0.176  Sum_probs=35.8

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ++|||=||.||.+.-++.. ...|++||-++.....+++++..
T Consensus        91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~r  132 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLAR  132 (250)
T ss_pred             EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHH
Confidence            7999999999999865544 44699999999999999888755

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=89.64  E-value=0.4  Score=44.39  Aligned_cols=44  Identities=20%  Similarity=0.243  Sum_probs=37.8

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..-+||+||-.|-+|.. +++.|  ..|--||.++..++.|++++.-
T Consensus        59 ~~~~LDIGCNsG~lt~~-iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLS-IAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             cceeEeccCCcchhHHH-HHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            45799999999999987 66666  5788999999999999998743

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=89.60  E-value=0.79  Score=45.73  Aligned_cols=48  Identities=21%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH  205 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~  205 (232)
                      ..-+||+|+|+|-.+---.....+.|+++|.=.-|.+.|+.-...+++
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~  114 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM  114 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC
Confidence            457999999999999422222369999999999999999998877665

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=89.10  E-value=0.62  Score=40.83  Aligned_cols=46  Identities=22%  Similarity=0.183  Sum_probs=42.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ...++|||=||+|-++..=|++.+..|.+||.+.+-+..+++|+..
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~   88 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKA   88 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence            3469999999999999999999999999999999999999999865

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=88.30  E-value=1.1  Score=43.18  Aligned_cols=47  Identities=19%  Similarity=0.351  Sum_probs=40.1

Q ss_pred             cceeeeccCCccccchHHHHhhc---------cCeeEEecCcHHHHHHHHHHhCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAPE  203 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~---------f~~VDLVEPv~~Fle~Are~l~~~  203 (232)
                      ....++++|||.|.....||...         -.++-+||||+.+...=++.|+..
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            34689999999999999988766         368999999999999888888663

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=88.23  E-value=0.49  Score=40.80  Aligned_cols=42  Identities=17%  Similarity=0.110  Sum_probs=32.7

Q ss_pred             eeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          160 VALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+||+|||-|+....+ +...  ..+-.||+...-+..|...+..
T Consensus        20 l~lEIG~G~G~~l~~~-A~~~Pd~n~iGiE~~~~~v~~a~~~~~~   63 (195)
T PF02390_consen   20 LILEIGCGKGEFLIEL-AKRNPDINFIGIEIRKKRVAKALRKAEK   63 (195)
T ss_dssp             EEEEET-TTSHHHHHH-HHHSTTSEEEEEES-HHHHHHHHHHHHH
T ss_pred             eEEEecCCCCHHHHHH-HHHCCCCCEEEEecchHHHHHHHHHHHh
Confidence            8999999999999885 4444  5788999999999988766544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=87.50  E-value=0.95  Score=43.38  Aligned_cols=33  Identities=24%  Similarity=0.184  Sum_probs=26.6

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCc
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV  189 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv  189 (232)
                      .+..+|||+||.+|--|.. |.+....|.+||..
T Consensus       210 ~~g~~vlDLGAsPGGWT~~-L~~rG~~V~AVD~g  242 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQ-LVRRGMFVTAVDNG  242 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHH-HHHcCCEEEEEech
Confidence            3557999999999999975 55555699999944

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.09  E-value=1.6  Score=39.60  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=56.8

Q ss_pred             CcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc----cCeeEEecCcHHHHHHHHHHhCCC
Q 026812          128 GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPE  203 (232)
Q Consensus       128 ~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~----f~~VDLVEPv~~Fle~Are~l~~~  203 (232)
                      -++|-+++..  ..|..|... +     .+...+||+|+|+|-.|-- ...+    +-.+.-||-.+..++-+++++..+
T Consensus        61 ~~iSAp~mha--~~le~L~~~-L-----~pG~s~LdvGsGSGYLt~~-~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~  131 (237)
T KOG1661|consen   61 LTISAPHMHA--TALEYLDDH-L-----QPGASFLDVGSGSGYLTAC-FARMVGATGGNVHGIEHIPELVEYSKKNLDKD  131 (237)
T ss_pred             eEEcchHHHH--HHHHHHHHh-h-----ccCcceeecCCCccHHHHH-HHHHhcCCCccccchhhhHHHHHHHHHHHHhh
Confidence            4477777653  223333321 1     1236899999999999853 4433    444578999999999999988652


Q ss_pred             C-----CCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          204 N-----HMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       204 ~-----~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      -     ...-+...+.=+.-=+.|-|.+..+||
T Consensus       132 i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YD  164 (237)
T KOG1661|consen  132 ITTSESSSKLKRGELSIVVGDGRKGYAEQAPYD  164 (237)
T ss_pred             ccCchhhhhhccCceEEEeCCccccCCccCCcc
Confidence            1     000111222122233577777777888

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=86.09  E-value=1.4  Score=43.31  Aligned_cols=46  Identities=11%  Similarity=0.036  Sum_probs=38.9

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||++||+|--|.++...+-  ..|.++|++++.+..+++++..
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r  160 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR  160 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            346899999999999988654442  4899999999999999999865

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=85.41  E-value=1.1  Score=40.03  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             eeeccCCccccchHHHHhhccCe-eEEecCcHHHHHHHHHH
Q 026812          160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARES  199 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~-VDLVEPv~~Fle~Are~  199 (232)
                      +|||.|||-|-+-..|....|.. ..-||-+++-++.|+..
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~ni  110 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNI  110 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHH
Confidence            89999999999998877777865 99999999999987654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=84.49  E-value=2.1  Score=38.69  Aligned_cols=41  Identities=22%  Similarity=0.164  Sum_probs=37.1

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l  200 (232)
                      ....|.|||+|-.+- +-++..++|-+||-+++-...|.+|+
T Consensus        34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~   74 (252)
T COG4076          34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENL   74 (252)
T ss_pred             hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcC
Confidence            468899999999994 57777899999999999999999997

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=84.25  E-value=1.9  Score=40.44  Aligned_cols=43  Identities=21%  Similarity=0.089  Sum_probs=37.0

Q ss_pred             eeeeccCCccccchHHHHhhcc-----CeeEEecCcHHHHHHHHHHhC
Q 026812          159 LVALDCGSGIGRITKNLLIRYF-----NEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f-----~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ..++|.|||.||=|+.||..+-     .+--.||.+..|++.+.+.+.
T Consensus        78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~  125 (319)
T TIGR03439        78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP  125 (319)
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh
Confidence            4799999999999998777652     347899999999999999887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=83.99  E-value=2.5  Score=38.26  Aligned_cols=65  Identities=17%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      .++.||||=-+.....++.+. +..+.++|.++.-++.|.+++....-    .+++...---||-.+.++
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l----~~~i~vr~~dgl~~l~~~   83 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL----SERIDVRLGDGLAVLELE   83 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC----cceEEEeccCCccccCcc
Confidence            459999999999999977765 78999999999999999999877432    355533333345444444

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=82.89  E-value=2  Score=40.91  Aligned_cols=69  Identities=9%  Similarity=-0.003  Sum_probs=50.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||.=||||-+|.++.......|.++|.|+.-++-++||+.....    ..+ ...++..-.++.|. ..+|
T Consensus       189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v----~~~-v~~i~gD~rev~~~~~~aD  258 (341)
T COG2520         189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV----EGR-VEPILGDAREVAPELGVAD  258 (341)
T ss_pred             CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc----cce-eeEEeccHHHhhhccccCC
Confidence            468999999999999985555444599999999999999999976332    122 24667666666665 3444

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=82.40  E-value=1.1  Score=38.83  Aligned_cols=67  Identities=9%  Similarity=0.005  Sum_probs=50.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      ...++|+|||.|-.+..+-..-...|--||.++.-++.+..|..+--      -.+ ++.|+.+-+..|.. .||
T Consensus        49 gkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE------vqi-dlLqcdildle~~~g~fD  116 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE------VQI-DLLQCDILDLELKGGIFD  116 (185)
T ss_pred             CcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh------hhh-heeeeeccchhccCCeEe
Confidence            35799999999999866555556889999999999999988765421      123 78888888777665 444

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=82.22  E-value=0.74  Score=38.09  Aligned_cols=35  Identities=23%  Similarity=0.213  Sum_probs=27.5

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSH  191 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~  191 (232)
                      ...++||+||++|-.|..++.+.  ..+|-+||+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            45799999999999998755554  379999998875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=82.11  E-value=1.6  Score=42.71  Aligned_cols=46  Identities=20%  Similarity=0.207  Sum_probs=38.4

Q ss_pred             cceeeeccCCccccchHHHHhhcc---------CeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---------~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ...++||.+||.|.....++....         .+|.++|.++..+..++.++..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~   85 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGE   85 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhh
Confidence            346899999999999988766542         5789999999999999988754

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=81.31  E-value=1.9  Score=38.84  Aligned_cols=42  Identities=19%  Similarity=0.106  Sum_probs=37.4

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +++|+-||+|-.+..|-.-.|+.|-+||.++..++..+.|..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence            589999999999999766668999999999999999999874

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=80.62  E-value=2  Score=39.57  Aligned_cols=84  Identities=20%  Similarity=0.307  Sum_probs=51.7

Q ss_pred             hhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC---e
Q 026812          106 YREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---E  182 (232)
Q Consensus       106 Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~---~  182 (232)
                      -..+.+||+.           |...++.----.|..|..-.+...+.. .....++|++|||.|--.-++|.-.-+   .
T Consensus        32 ~~~~~k~wD~-----------fy~~~~~rFfkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~   99 (264)
T KOG2361|consen   32 EREASKYWDT-----------FYKIHENRFFKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLK   99 (264)
T ss_pred             hcchhhhhhh-----------hhhhccccccchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeE
Confidence            3478899985           333333322223333433333222221 122338999999999999996654333   6


Q ss_pred             eEEecCcHHHHHHHHHHhC
Q 026812          183 VDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       183 VDLVEPv~~Fle~Are~l~  201 (232)
                      |=+.|-++.-++..+++-.
T Consensus       100 v~acDfsp~Ai~~vk~~~~  118 (264)
T KOG2361|consen  100 VYACDFSPRAIELVKKSSG  118 (264)
T ss_pred             EEEcCCChHHHHHHHhccc
Confidence            8899999999998887643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
1xtp_A	254	Structural Analysis Of Leishmania Major Lmaj004091a		4e-25
2ex4_A	241	Crystal Structure Of Human Methyltransferase Ad-003		2e-20

>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 11/147 (7%)
Query: 56  GAAADPKHKESS-AMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWE 114
           G  + P  + SS  + +SG D++GK +++ +E W+ ++  D    EK   WY + + YW 
Sbjct: 1   GPGSXPSKEASSRNLPISGRDTNGKTYRSTDEXWKAELTGDLYDPEK--GWYGKALEYWR 58
Query: 115 GVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKN 174
            V A+V GVLGG  +V++VDI+GS  F+  L     P    ++   ALDCG+GIGRITKN
Sbjct: 59  TVPATVSGVLGGXDHVHDVDIEGSRNFIASL-----PGHGTSR---ALDCGAGIGRITKN 110
Query: 175 LLIRYFNEVDLLEPVSHFLDAARESLA 201
           LL + +   DLLEPV H L+ A+  LA
Sbjct: 111 LLTKLYATTDLLEPVKHXLEEAKRELA 137

>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In Complex With S-adenosyl-l-homocysteine Length = 241

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 93  GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
           G   E  E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +  PN
Sbjct: 18  GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREG-PN 76
Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
                   ALDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +
Sbjct: 77  KTGTS--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------KR 128
Query: 213 ATNFFCVPLQVIT 225
             N+FC  LQ  T
Sbjct: 129 VRNYFCCGLQDFT 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	5e-40
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	2e-31

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score =  137 bits (345), Expect = 5e-40
 Identities = 58/162 (35%), Positives = 87/162 (53%), Gaps = 18/162 (11%)

Query: 61  PKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASV 120
            K   S  + +SG D++GK +++ +EMW+ ++   G+  + +  WY + + YW  V A+V
Sbjct: 7   SKEASSRNLPISGRDTNGKTYRSTDEMWKAEL--TGDLYDPEKGWYGKALEYWRTVPATV 64

Query: 121 DGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180
            GVLGG  +V++VDI+GS  F+  L               ALDCG+GIGRITKNLL + +
Sbjct: 65  SGVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLY 116

Query: 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ 222
              DLLEPV H L+ A+  LA              F    ++
Sbjct: 117 ATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASME 150

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score =  114 bits (286), Expect = 2e-31
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 9/130 (6%)

Query: 93  GEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPN 152
           G   E  E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +    
Sbjct: 18  GSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 77

Query: 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK 212
              +     LDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E        +
Sbjct: 78  TGTSCA---LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------KR 128

Query: 213 ATNFFCVPLQ 222
             N+FC  LQ
Sbjct: 129 VRNYFCCGLQ 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.83
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.46
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.71
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.69
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.66
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.62
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.6
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.57
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.55
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.54
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.54
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.53
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.53
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.51
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.5
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.48
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.47
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.47
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.46
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.45
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.45
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.44
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.44
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.44
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.42
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.42
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.41
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.41
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.4
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.4
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.4
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.4
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.39
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.39
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.39
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.38
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.38
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.37
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.36
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.36
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.36
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.35
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.35
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.35
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.35
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.35
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.34
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.34
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.34
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.33
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.33
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.32
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.31
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.31
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.31
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.31
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.3
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.3
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.29
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.29
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.29
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.28
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.28
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.27
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.27
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.27
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.26
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.26
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.25
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.25
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.25
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.25
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.24
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.24
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.23
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.22
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.22
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.22
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.21
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.21
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.21
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.21
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.21
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.21
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.2
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.2
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.2
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.2
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.19
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.19
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.18
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.18
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.17
2o07_A	304	Spermidine synthase; structural genomics, structur	98.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.16
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.16
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.16
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.15
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.14
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.14
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.14
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.13
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.13
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.13
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.12
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.12
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.12
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.11
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.1
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.1
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.1
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.1
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.09
3ocj_A	305	Putative exported protein; structural genomics, PS	98.09
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.08
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.08
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.08
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.08
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.08
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.08
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.08
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.07
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.07
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.07
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.06
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.06
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.06
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.04
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.04
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.04
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.03
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.03
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.03
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.03
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.02
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.02
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.01
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.01
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.01
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.01
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.0
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.0
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.0
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.0
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.99
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.99
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.99
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.98
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.97
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.97
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.97
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.97
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.96
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.95
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.94
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.93
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.93
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.93
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.92
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.92
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.92
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.92
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.91
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.91
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.91
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.9
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.9
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.9
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.9
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.89
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.88
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.88
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.87
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.87
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.85
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.84
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.83
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.83
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.83
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.82
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.82
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.82
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.8
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.79
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.79
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.77
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.77
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.77
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.76
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.76
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.75
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.73
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.73
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.73
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.72
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.72
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.71
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.69
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.69
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.69
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.68
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.68
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.63
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.63
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.62
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.61
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.6
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.56
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.56
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.54
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.53
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.52
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.52
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.51
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.51
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.51
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.5
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.49
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.46
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.44
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.43
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.43
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.42
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.39
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.38
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.37
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.33
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.29
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.29
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.27
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.21
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.17
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.16
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.09
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.08
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.08
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.05
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.05
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.0
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.99
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.96
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.93
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.92
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.89
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.81
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.78
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	96.76
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.75
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.74
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.69
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.69
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	96.66
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.64
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.59
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.56
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.45
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.42
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	96.39
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.38
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	96.38
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.3
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.22
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	96.09
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	96.09
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	96.04
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.03
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	95.9
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.82
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	95.8
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	95.6
3cvo_A	202	Methyltransferase-like protein of unknown functio;	95.52
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.09
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	94.49
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	94.43
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	94.4
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	93.78
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	93.17
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	93.12
3sso_A	419	Methyltransferase; macrolide, natural product, ros	92.85
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.94
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	91.45
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	90.6
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	90.48
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	90.07
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	89.94
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	88.31
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	88.03
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	85.76
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	85.22
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	85.2
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	84.35
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	84.15
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	82.03
3lkd_A	542	Type I restriction-modification system methyltrans	82.03

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.83  E-value=6.1e-21  Score=159.55  Aligned_cols=150  Identities=39%  Similarity=0.744  Sum_probs=121.9

Q ss_pred             CCcccccccccCCCCCcccCHHHHHHHHhccCCchhhhhhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHH
Q 026812           64 KESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQ  143 (232)
Q Consensus        64 ~~~~~~~~~G~ds~g~~~~s~~emWk~~~~~d~~~~~~~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~  143 (232)
                      ..|.+|+++|.|++|+.|++|+++|++.+.....  .....||..+.+||+....+.++|++++..++..+......||.
T Consensus        10 ~~~~~~~~~g~d~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   87 (254)
T 1xtp_A           10 ASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIA   87 (254)
T ss_dssp             ---CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHH
T ss_pred             CCcccccccccCCCCcccccHHHHHHHHHhcccc--ccchhhhhhhhhHHhcCCccccceecCcCccCHHHHHHHHHHHH
Confidence            3477899999999999999999999999876322  22335999999999999999999999999999999888888888


Q ss_pred             HHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          144 MLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       144 ~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      .+..        .+..++||+|||+|+++..|+...+.+|++||+++.+++.|++++...       .+ .++.+..+++
T Consensus        88 ~l~~--------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~-~~~~~~d~~~  151 (254)
T 1xtp_A           88 SLPG--------HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-------PV-GKFILASMET  151 (254)
T ss_dssp             TSTT--------CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-------SE-EEEEESCGGG
T ss_pred             hhcc--------cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-------Cc-eEEEEccHHH
Confidence            7643        234689999999999999876666778999999999999999987541       23 3788888887


Q ss_pred             ccC-CCCCC
Q 026812          224 ITN-IIQYH  231 (232)
Q Consensus       224 F~P-e~~YD  231 (232)
                      +.+ ...||
T Consensus       152 ~~~~~~~fD  160 (254)
T 1xtp_A          152 ATLPPNTYD  160 (254)
T ss_dssp             CCCCSSCEE
T ss_pred             CCCCCCCeE
Confidence            753 34676

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.46  E-value=3.8e-14  Score=118.77  Aligned_cols=122  Identities=39%  Similarity=0.754  Sum_probs=97.6

Q ss_pred             hhhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc
Q 026812          101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF  180 (232)
Q Consensus       101 ~~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f  180 (232)
                      ....||.+..+||+....+.++++++|..++.+++..+..|++.+......   ..+..+|||+|||+|+++..|+...+
T Consensus        26 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~  102 (241)
T 2ex4_A           26 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLF  102 (241)
T ss_dssp             CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred             ccchhHHHHHHHHhcCCccccccccCCCCcchhhHHhHHHHHHHHHHhccc---CCCCCEEEEECCCCCHHHHHHHHhcC
Confidence            456799999999999999999999999999999999999999998763211   12356999999999999988666656


Q ss_pred             CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       181 ~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      .+|+.||+++.+++.|++++....      ....++++..++++.+.. .||
T Consensus       103 ~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~~d~~~~~~~~~~fD  148 (241)
T 2ex4_A          103 REVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYD  148 (241)
T ss_dssp             SEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEE
T ss_pred             CEEEEEeCCHHHHHHHHHHhhhcC------CceEEEEEcChhhcCCCCCCEE
Confidence            799999999999999999875420      112378888888877554 676

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.71  E-value=7.4e-09  Score=91.41  Aligned_cols=45  Identities=13%  Similarity=0.096  Sum_probs=39.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||+|||+|++|.. |++...+|++||+++.|++.|++++..
T Consensus        45 ~g~~VLDlGcGtG~~a~~-La~~g~~V~gvD~S~~ml~~Ar~~~~~   89 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEK-ALERGASVTVFDFSQRMCDDLAEALAD   89 (261)
T ss_dssp             TTCEEEEECTTCHHHHHH-HHHTTCEEEEEESCHHHHHHHHHHTSS
T ss_pred             CcCEEEEEeCcchHHHHH-HHhcCCEEEEEECCHHHHHHHHHHHHh
Confidence            346899999999999987 455567999999999999999998754

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.69  E-value=4.6e-08  Score=79.76  Aligned_cols=76  Identities=20%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      .-..+|+.+...        +..++||+|||.|+++..|+ +...+|..||+++.+++.|++.+.         .++ ++
T Consensus        33 ~~~~~l~~~~~~--------~~~~vLDiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~---------~~~-~~   93 (220)
T 3hnr_A           33 HYEDILEDVVNK--------SFGNVLEFGVGTGNLTNKLL-LAGRTVYGIEPSREMRMIAKEKLP---------KEF-SI   93 (220)
T ss_dssp             THHHHHHHHHHT--------CCSEEEEECCTTSHHHHHHH-HTTCEEEEECSCHHHHHHHHHHSC---------TTC-CE
T ss_pred             HHHHHHHHhhcc--------CCCeEEEeCCCCCHHHHHHH-hCCCeEEEEeCCHHHHHHHHHhCC---------Cce-EE
Confidence            335667766542        33689999999999998754 446799999999999999999864         123 77


Q ss_pred             EEecCCCccCCCCCC
Q 026812          217 FCVPLQVITNIIQYH  231 (232)
Q Consensus       217 ~~vgLQdF~Pe~~YD  231 (232)
                      ++..++++.+...||
T Consensus        94 ~~~d~~~~~~~~~fD  108 (220)
T 3hnr_A           94 TEGDFLSFEVPTSID  108 (220)
T ss_dssp             ESCCSSSCCCCSCCS
T ss_pred             EeCChhhcCCCCCeE
Confidence            888888876556777

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.66  E-value=4.5e-08  Score=79.84  Aligned_cols=66  Identities=9%  Similarity=0.140  Sum_probs=55.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|+++.. |++.+.+|+.||+++.+++.|++++...       .++ ++++..+.++.|...||
T Consensus        51 ~~~~vLDiGcG~G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~-~~~~~d~~~~~~~~~fD  116 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEK-LAPHCKRLTVIDVMPRAIGRACQRTKRW-------SHI-SWAATDILQFSTAELFD  116 (216)
T ss_dssp             SEEEEEEECCTTSHHHHH-HGGGEEEEEEEESCHHHHHHHHHHTTTC-------SSE-EEEECCTTTCCCSCCEE
T ss_pred             CCCcEEEEcCCCCHHHHH-HHHcCCEEEEEECCHHHHHHHHHhcccC-------CCe-EEEEcchhhCCCCCCcc
Confidence            457999999999999987 4555679999999999999999987552       234 88999999988777887

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.62  E-value=5e-08  Score=77.89  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=49.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..++||+|||+|++|.. |++...+|..||+++.+++.|++++.....     .++ ++.+..++++.  ++..||
T Consensus        23 ~~~vLDiGcG~G~~~~~-la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-----~~v-~~~~~~~~~l~~~~~~~fD   91 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAF-LAGLSKKVYAFDVQEQALGKTSQRLSDLGI-----ENT-ELILDGHENLDHYVREPIR   91 (185)
T ss_dssp             TCEEEESCCTTSHHHHH-HHTTSSEEEEEESCHHHHHHHHHHHHHHTC-----CCE-EEEESCGGGGGGTCCSCEE
T ss_pred             CCEEEEEcCCCCHHHHH-HHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CcE-EEEeCcHHHHHhhccCCcC
Confidence            46899999999999987 455588999999999999999998754211     233 67776666642  234565

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.60  E-value=2.8e-08  Score=81.30  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=50.9

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|+.+.. |++.+.+|..||+++.+++.|++.+..         ++ ++.+..++++.++..||
T Consensus        44 ~~vLDiGcG~G~~~~~-l~~~~~~v~gvD~s~~~~~~a~~~~~~---------~v-~~~~~d~~~~~~~~~fD  105 (250)
T 2p7i_A           44 GNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAISHAQGRLKD---------GI-TYIHSRFEDAQLPRRYD  105 (250)
T ss_dssp             SCEEEESCTTSHHHHH-HTTTCSCEEEEESCHHHHHHHHHHSCS---------CE-EEEESCGGGCCCSSCEE
T ss_pred             CcEEEECCCCCHHHHH-HHHhCCcEEEEeCCHHHHHHHHHhhhC---------Ce-EEEEccHHHcCcCCccc
Confidence            5799999999999987 555567999999999999999997632         33 78888888876666776

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.57  E-value=6.2e-08  Score=80.06  Aligned_cols=72  Identities=11%  Similarity=-0.079  Sum_probs=52.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCC---C----CCCCCcceEEEecCCCccCC--C
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---A----PDMHKATNFFCVPLQVITNI--I  228 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~---~----~~~~rv~n~~~vgLQdF~Pe--~  228 (232)
                      ..+|||+|||+|+.+..|..+ ..+|+.||.++.|++.|++.....+..   +    ....+| ++++..+.++.+.  .
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~l~~~~~~  100 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI-EIWCGDFFALTARDIG  100 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS-EEEEECCSSSTHHHHH
T ss_pred             CCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc-EEEECccccCCcccCC
Confidence            468999999999999875544 559999999999999999876421000   0    001234 8899999988754  4


Q ss_pred             CCC
Q 026812          229 QYH  231 (232)
Q Consensus       229 ~YD  231 (232)
                      .||
T Consensus       101 ~fD  103 (203)
T 1pjz_A          101 HCA  103 (203)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            666

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.55  E-value=7.9e-08  Score=79.29  Aligned_cols=64  Identities=19%  Similarity=0.105  Sum_probs=50.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|+++..++ +...+|..||+++.+++.|+++...        .++ ++++..+.++.. +..||
T Consensus        54 ~~~vLDiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~~~~d~~~~~~~~~~fD  118 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLS-RTGYKAVGVDISEVMIQKGKERGEG--------PDL-SFIKGDLSSLPFENEQFE  118 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHTTTCB--------TTE-EEEECBTTBCSSCTTCEE
T ss_pred             CCeEEEEcCCCCHHHHHHH-HcCCeEEEEECCHHHHHHHHhhccc--------CCc-eEEEcchhcCCCCCCCcc
Confidence            3589999999999998754 4466999999999999999987522        344 788888888753 44666

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.54  E-value=1e-07  Score=79.33  Aligned_cols=64  Identities=25%  Similarity=0.285  Sum_probs=51.1

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|.++..++... ..+|..||+++.|++.|+++.          .++ ++.+..++++.++..||
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----------~~~-~~~~~d~~~~~~~~~fD   97 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----------PNT-NFGKADLATWKPAQKAD   97 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----------TTS-EEEECCTTTCCCSSCEE
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----------CCc-EEEECChhhcCccCCcC
Confidence            34689999999999998755443 579999999999999999873          233 78888888877656776

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.54  E-value=6.8e-08  Score=82.56  Aligned_cols=66  Identities=18%  Similarity=0.119  Sum_probs=53.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|+++..|+.. ..+|+.||+++.+++.|++++....      .++ ++++..+.++.+...||
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~------~~~-~~~~~d~~~~~~~~~fD  186 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKEN------LNI-STALYDINAANIQENYD  186 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT------CCE-EEEECCGGGCCCCSCEE
T ss_pred             CCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcC------Cce-EEEEeccccccccCCcc
Confidence            468999999999999875544 5699999999999999999875421      134 88899998877766776

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.53  E-value=6.8e-08  Score=78.66  Aligned_cols=61  Identities=18%  Similarity=0.196  Sum_probs=48.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||.|+++..|+ +...+|..||+++.+++.|++++..            ++.+..+.++.+...||
T Consensus        44 ~~~vLDiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~------------~~~~~d~~~~~~~~~fD  104 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAML-AAGFDVDATDGSPELAAEASRRLGR------------PVRTMLFHQLDAIDAYD  104 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTS------------CCEECCGGGCCCCSCEE
T ss_pred             CCcEEEECCCCCHHHHHHH-HcCCeEEEECCCHHHHHHHHHhcCC------------ceEEeeeccCCCCCcEE
Confidence            3589999999999998755 4466999999999999999998621            45667777766556666

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.53  E-value=1.2e-07  Score=76.56  Aligned_cols=61  Identities=26%  Similarity=0.398  Sum_probs=47.6

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      .++||+|||+|+++..|+.. ..+|..||+++.+++.|+++..          ++ ++.+..++++.. ...||
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~----------~~-~~~~~d~~~~~~~~~~fD  104 (203)
T 3h2b_A           43 GVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTHP----------SV-TFHHGTITDLSDSPKRWA  104 (203)
T ss_dssp             SCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHCT----------TS-EEECCCGGGGGGSCCCEE
T ss_pred             CeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC----------CC-eEEeCcccccccCCCCeE
Confidence            58999999999999875544 5699999999999999998742          23 677777777653 34565

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.51  E-value=2.9e-07  Score=76.68  Aligned_cols=70  Identities=14%  Similarity=0.013  Sum_probs=53.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..+|||+|||+|.++..++.....+|..||+++.|++.|++++.....    ..++ ++.+..++++.++..||
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~fD  105 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV----SERV-HFIHNDAAGYVANEKCD  105 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEESCCTTCCCSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC----Ccce-EEEECChHhCCcCCCCC
Confidence            3468999999999999875554445999999999999999988754211    1234 78888888876655676

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.50  E-value=9.7e-08  Score=79.43  Aligned_cols=67  Identities=18%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.++..++.....+|+.||+++.+++.|++.+...       .++ ++.+..+.++.. ...||
T Consensus        55 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~-~~~~~d~~~~~~~~~~fD  122 (266)
T 3ujc_A           55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-------NKI-IFEANDILTKEFPENNFD  122 (266)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-------TTE-EEEECCTTTCCCCTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-------CCe-EEEECccccCCCCCCcEE
Confidence            34689999999999998865554579999999999999999987542       233 788888887653 34666

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.48  E-value=8.2e-08  Score=81.40  Aligned_cols=87  Identities=14%  Similarity=0.099  Sum_probs=56.2

Q ss_pred             hhhhhcccCCccchhcc-----ccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccC
Q 026812          107 REGISYWEGVEASVDGV-----LGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN  181 (232)
Q Consensus       107 ~~a~~YWe~veaTvdGM-----LGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~  181 (232)
                      .++..+|+...++.|+.     +.|-.-+.+-. ..-...+..+..        .+..||||+|||+|..+..+......
T Consensus        14 e~~~~~w~~~~~~yd~~~~~l~~~g~~vm~~we-~~~m~~~a~~~~--------~~G~rVLdiG~G~G~~~~~~~~~~~~   84 (236)
T 3orh_A           14 ENCSPAWGAAPAAYDAADTHLRILGKPVMERWE-TPYMHALAAAAS--------SKGGRVLEVGFGMAIAASKVQEAPID   84 (236)
T ss_dssp             CBCHHHHTTSCEEECTTSSEEEETTEEEEEGGG-HHHHHHHHHHHT--------TTCEEEEEECCTTSHHHHHHTTSCEE
T ss_pred             chhhhhHhcCcCCCCcchhhhhhcCHHHHHHHH-HHHHHHHHHhhc--------cCCCeEEEECCCccHHHHHHHHhCCc
Confidence            35678899888887742     11111011110 112233444333        23469999999999999875444457


Q ss_pred             eeEEecCcHHHHHHHHHHhCC
Q 026812          182 EVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       182 ~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +|+.||+++.+++.|+++...
T Consensus        85 ~v~~id~~~~~~~~a~~~~~~  105 (236)
T 3orh_A           85 EHWIIECNDGVFQRLRDWAPR  105 (236)
T ss_dssp             EEEEEECCHHHHHHHHHHGGG
T ss_pred             EEEEEeCCHHHHHHHHHHHhh
Confidence            999999999999999998755

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.47  E-value=3.9e-07  Score=71.65  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      .++.+++.+..        .+..++||+|||+|.++..++.. ..+|..||+++.+++.|++++.....   ...++ ++
T Consensus        40 ~~~~l~~~~~~--------~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~---~~~~~-~~  106 (194)
T 1dus_A           40 GTKILVENVVV--------DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNL---DNYDI-RV  106 (194)
T ss_dssp             HHHHHHHHCCC--------CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC---TTSCE-EE
T ss_pred             HHHHHHHHccc--------CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCC---Cccce-EE
Confidence            44555655432        23468999999999999875555 78999999999999999998754211   00134 78


Q ss_pred             EEecCCCccCCCCCC
Q 026812          217 FCVPLQVITNIIQYH  231 (232)
Q Consensus       217 ~~vgLQdF~Pe~~YD  231 (232)
                      ++..+.++.+...||
T Consensus       107 ~~~d~~~~~~~~~~D  121 (194)
T 1dus_A          107 VHSDLYENVKDRKYN  121 (194)
T ss_dssp             EECSTTTTCTTSCEE
T ss_pred             EECchhcccccCCce
Confidence            888888876666776

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.47  E-value=1.6e-07  Score=75.85  Aligned_cols=62  Identities=21%  Similarity=0.147  Sum_probs=50.4

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||.|+++..+... ..+|..||+++.+++.|++.  .       ..++ ++.+..++++.+...||
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~--~-------~~~~-~~~~~d~~~~~~~~~~D  109 (218)
T 3ou2_A           48 GDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGRH--G-------LDNV-EFRQQDLFDWTPDRQWD  109 (218)
T ss_dssp             SEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGGG--C-------CTTE-EEEECCTTSCCCSSCEE
T ss_pred             CeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhc--C-------CCCe-EEEecccccCCCCCcee
Confidence            58999999999999875544 67999999999999999982  1       0233 88999999886666777

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.46  E-value=2.9e-07  Score=79.58  Aligned_cols=83  Identities=12%  Similarity=0.035  Sum_probs=59.5

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEE
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF  217 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~  217 (232)
                      ...++..+.....    ..+..+|||+|||+|.++..++.....+|+.||+++.+++.|++++.....    ..+| ++.
T Consensus        57 ~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~  127 (302)
T 3hem_A           57 QYAKRKLALDKLN----LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS----PRRK-EVR  127 (302)
T ss_dssp             HHHHHHHHHHTTC----CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC----SSCE-EEE
T ss_pred             HHHHHHHHHHHcC----CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEE
Confidence            3445555544211    134468999999999999986655457999999999999999998755221    1244 788


Q ss_pred             EecCCCccCCCCCC
Q 026812          218 CVPLQVITNIIQYH  231 (232)
Q Consensus       218 ~vgLQdF~Pe~~YD  231 (232)
                      +..+.++  ...||
T Consensus       128 ~~d~~~~--~~~fD  139 (302)
T 3hem_A          128 IQGWEEF--DEPVD  139 (302)
T ss_dssp             ECCGGGC--CCCCS
T ss_pred             ECCHHHc--CCCcc
Confidence            8888887  45777

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.45  E-value=7.8e-08  Score=80.04  Aligned_cols=59  Identities=22%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|+++.. |++.+.+|..||+++.+++.|++++..        .++ ++++..+.++.+
T Consensus        57 ~~~vLD~GcG~G~~~~~-la~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~-~~~~~d~~~~~~  115 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKF-LSQFFPRVIGLDVSKSALEIAAKENTA--------ANI-SYRLLDGLVPEQ  115 (245)
T ss_dssp             TSCEEEETCTTSHHHHH-HHHHSSCEEEEESCHHHHHHHHHHSCC--------TTE-EEEECCTTCHHH
T ss_pred             CCeEEEEcCCCCHHHHH-HHHhCCCEEEEECCHHHHHHHHHhCcc--------cCc-eEEECccccccc
Confidence            45899999999999987 455566999999999999999998732        234 788888877543

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.45  E-value=2.9e-07  Score=75.87  Aligned_cols=67  Identities=18%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|+++..++... ..+|..||+++.+++.|++++...       .++ ++++..++++.+...||
T Consensus        44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------~~~-~~~~~d~~~~~~~~~fD  111 (234)
T 3dtn_A           44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-------LKV-KYIEADYSKYDFEEKYD  111 (234)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-------TTE-EEEESCTTTCCCCSCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-------CCE-EEEeCchhccCCCCCce
Confidence            34699999999999998855543 469999999999999999987552       244 88999999887766776

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.44  E-value=2.2e-07  Score=80.81  Aligned_cols=67  Identities=10%  Similarity=0.121  Sum_probs=51.0

Q ss_pred             ceeeeccCCccccchHHHHhhcc----CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f----~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|++|..| ++.+    .+|..||+++.|++.|++++.....    ..+| ++.+..++++..+ .||
T Consensus        71 ~~~vLDlGcGtG~~~~~l-a~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~----~~~v-~~~~~D~~~~~~~-~~d  141 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSV-RRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA----PTPV-DVIEGDIRDIAIE-NAS  141 (261)
T ss_dssp             TCEEEEETCTTTHHHHHH-HHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC----SSCE-EEEESCTTTCCCC-SEE
T ss_pred             CCEEEEEeCCCCHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc----CceE-EEeeccccccccc-ccc
Confidence            468999999999999875 4443    3899999999999999998755321    2344 7888888887543 454

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.44  E-value=1.5e-07  Score=82.07  Aligned_cols=60  Identities=22%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      .+|||+|||+|..|.. |++.+.+|..||+++.|++.|++.           .+| ++.+..++++.. +..||
T Consensus        41 ~~vLDvGcGtG~~~~~-l~~~~~~v~gvD~s~~ml~~a~~~-----------~~v-~~~~~~~e~~~~~~~sfD  101 (257)
T 4hg2_A           41 GDALDCGCGSGQASLG-LAEFFERVHAVDPGEAQIRQALRH-----------PRV-TYAVAPAEDTGLPPASVD  101 (257)
T ss_dssp             SEEEEESCTTTTTHHH-HHTTCSEEEEEESCHHHHHTCCCC-----------TTE-EEEECCTTCCCCCSSCEE
T ss_pred             CCEEEEcCCCCHHHHH-HHHhCCEEEEEeCcHHhhhhhhhc-----------CCc-eeehhhhhhhcccCCccc
Confidence            5899999999999986 677889999999999999987642           244 788888888763 34565

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.44  E-value=8.6e-08  Score=77.33  Aligned_cols=68  Identities=15%  Similarity=0.069  Sum_probs=53.6

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC---CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN---IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P---e~~YD  231 (232)
                      ..++||+|||+|.++..++...+.+|..||.++.+++.|++++.....     .++ ++++..+.++.+   ...||
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~~~fD  115 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-----SGA-TLRRGAVAAVVAAGTTSPVD  115 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-----SCE-EEEESCHHHHHHHCCSSCCS
T ss_pred             CCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----Cce-EEEEccHHHHHhhccCCCcc
Confidence            468999999999999987776677999999999999999998754211     233 788888877642   45776

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.42  E-value=4.4e-07  Score=75.48  Aligned_cols=62  Identities=13%  Similarity=0.045  Sum_probs=48.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC---CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN---IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P---e~~YD  231 (232)
                      ..+|||+|||+|.++..+ ++...+|..||+++.+++.|+++.          .++ ++.+..+.+..|   +..||
T Consensus        49 ~~~vLDiGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~----------~~~-~~~~~d~~~~~~~~~~~~fD  113 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARF-GPQAARWAAYDFSPELLKLARANA----------PHA-DVYEWNGKGELPAGLGAPFG  113 (226)
T ss_dssp             TCEEEEESCTTSHHHHHH-GGGSSEEEEEESCHHHHHHHHHHC----------TTS-EEEECCSCSSCCTTCCCCEE
T ss_pred             CCeEEEeCCCCCHHHHHH-HHcCCEEEEEECCHHHHHHHHHhC----------CCc-eEEEcchhhccCCcCCCCEE
Confidence            368999999999999875 555679999999999999999973          233 788888854333   34665

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.42  E-value=2.8e-07  Score=72.07  Aligned_cols=67  Identities=15%  Similarity=0.225  Sum_probs=52.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++. ...+|..||+++.+++.|++++.....     .++ ++++..+.+..|+..||
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~~-~~~~~d~~~~~~~~~~D  102 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-----KNC-QIIKGRAEDVLDKLEFN  102 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-----CSE-EEEESCHHHHGGGCCCS
T ss_pred             CCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-----CcE-EEEECCccccccCCCCc
Confidence            45899999999999987555 678999999999999999998754211     233 77888877755555776

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.41  E-value=1.7e-07  Score=77.68  Aligned_cols=67  Identities=16%  Similarity=-0.002  Sum_probs=54.0

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|+++..| ++...+|..||+++.+++.|++++...+.    ..++ +|++..+.++.|...||
T Consensus        68 ~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~fD  134 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAM-ASPERFVVGLDISESALAKANETYGSSPK----AEYF-SFVKEDVFTWRPTELFD  134 (235)
T ss_dssp             EEEEEETCTTCHHHHHH-CBTTEEEEEECSCHHHHHHHHHHHTTSGG----GGGE-EEECCCTTTCCCSSCEE
T ss_pred             CCEEEeCCCCCHHHHHH-HhCCCeEEEEECCHHHHHHHHHHhhccCC----Ccce-EEEECchhcCCCCCCee
Confidence            59999999999999875 55566899999999999999998855211    1234 88899999888777777

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.41  E-value=4.7e-07  Score=76.15  Aligned_cols=68  Identities=15%  Similarity=0.272  Sum_probs=50.8

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.+|.. |++.+.+|..||+++.|++.|++++.....     .++ ++.+..++++.. +..||
T Consensus        37 ~~~~vLDiGcG~G~~~~~-l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~v-~~~~~d~~~l~~~~~~fD  105 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANA-FAPFVKKVVAFDLTEDILKVARAFIEGNGH-----QQV-EYVQGDAEQMPFTDERFH  105 (260)
T ss_dssp             SCCEEEEETCTTCHHHHH-HGGGSSEEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEECCC-CCCSCTTCEE
T ss_pred             CCCEEEEEeCCCCHHHHH-HHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----Cce-EEEEecHHhCCCCCCCEE
Confidence            346899999999999987 556667999999999999999988643211     233 778888887653 34666

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.40  E-value=1.2e-07  Score=78.27  Aligned_cols=67  Identities=19%  Similarity=0.159  Sum_probs=51.8

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      .++||+|||+|.+|..++...+.+|..||.++.+++.|++++.....     .++ ++++..+.++.|.  ..||
T Consensus        56 ~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-----~~v-~~~~~D~~~~~~~~~~~fD  124 (202)
T 2fpo_A           56 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-----GNA-RVVNSNAMSFLAQKGTPHN  124 (202)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSE-EEECSCHHHHHSSCCCCEE
T ss_pred             CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcE-EEEECCHHHHHhhcCCCCC
Confidence            58999999999999987777778999999999999999998854211     233 6777777665442  3565

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.40  E-value=4.5e-07  Score=78.28  Aligned_cols=68  Identities=22%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +|||+|||+|+++..|+. ...+|..||+++.+++.|++++.....  ....+| ++++..+.++.++..||
T Consensus        85 ~vLDlGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~v-~~~~~d~~~~~~~~~fD  152 (299)
T 3g2m_A           85 PVLELAAGMGRLTFPFLD-LGWEVTALELSTSVLAAFRKRLAEAPA--DVRDRC-TLVQGDMSAFALDKRFG  152 (299)
T ss_dssp             CEEEETCTTTTTHHHHHT-TTCCEEEEESCHHHHHHHHHHHHTSCH--HHHTTE-EEEECBTTBCCCSCCEE
T ss_pred             cEEEEeccCCHHHHHHHH-cCCeEEEEECCHHHHHHHHHHHhhccc--ccccce-EEEeCchhcCCcCCCcC
Confidence            899999999999987554 466999999999999999998754210  000233 89999999987766777

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.40  E-value=6.5e-07  Score=70.24  Aligned_cols=69  Identities=12%  Similarity=-0.055  Sum_probs=49.3

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      +..++||+|||+|.++..++... ..+|..||+++.+++.|++++.....    ..++  +++....+.-|.  ..||
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~--~~~~d~~~~~~~~~~~~D   96 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV----SDRI--AVQQGAPRAFDDVPDNPD   96 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC----TTSE--EEECCTTGGGGGCCSCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC----CCCE--EEecchHhhhhccCCCCC
Confidence            34689999999999998755443 46999999999999999998755221    1244  455555443343  5677

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.40  E-value=3.4e-07  Score=76.31  Aligned_cols=83  Identities=20%  Similarity=0.163  Sum_probs=59.0

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      ....|+..+.....    ..+..++||+|||+|+++..|+. ...+|..||+++.+++.|++++....      .++ ++
T Consensus        25 ~~~~~~~~~~~~~~----~~~~~~vLDlGcG~G~~~~~l~~-~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v-~~   92 (252)
T 1wzn_A           25 AEIDFVEEIFKEDA----KREVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERN------LKI-EF   92 (252)
T ss_dssp             HHHHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTT------CCC-EE
T ss_pred             HHHHHHHHHHHHhc----ccCCCEEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHhcC------Cce-EE
Confidence            34556666654211    12346899999999999987554 45699999999999999998874421      133 78


Q ss_pred             EEecCCCccCCCCCC
Q 026812          217 FCVPLQVITNIIQYH  231 (232)
Q Consensus       217 ~~vgLQdF~Pe~~YD  231 (232)
                      ++..+.++.+...||
T Consensus        93 ~~~d~~~~~~~~~fD  107 (252)
T 1wzn_A           93 LQGDVLEIAFKNEFD  107 (252)
T ss_dssp             EESCGGGCCCCSCEE
T ss_pred             EECChhhcccCCCcc
Confidence            888888776555666

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.39  E-value=1.6e-06  Score=73.87  Aligned_cols=68  Identities=13%  Similarity=0.141  Sum_probs=52.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||.|.++..++.....+|+.||+++.+++.|++.+.....    ..++ ++.+..++++.  ..||
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~--~~fD  131 (287)
T 1kpg_A           64 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN----LRSK-RVLLAGWEQFD--EPVD  131 (287)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC----CSCE-EEEESCGGGCC--CCCS
T ss_pred             CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC----CCCe-EEEECChhhCC--CCee
Confidence            3468999999999999986656556999999999999999998754211    1234 77888887764  5676

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.39  E-value=3.7e-07  Score=76.05  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=53.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.++..++.....+|+.||+++.+++.|++++.....    ..++ ++++..++++.. ...||
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~~fD  116 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC----ADRV-KGITGSMDNLPFQNEELD  116 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEECCTTSCSSCTTCEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC----CCce-EEEECChhhCCCCCCCEE
Confidence            3458999999999999885554445999999999999999998755221    1334 888999988763 34676

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.39  E-value=1.3e-07  Score=77.95  Aligned_cols=64  Identities=17%  Similarity=0.119  Sum_probs=49.8

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      .++||+|||+|.+|..++...+.+|..||.++.+++.|++++.....   ...++ ++++..+.++.+
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v-~~~~~d~~~~~~  118 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKC---SSEQA-EVINQSSLDFLK  118 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC---CTTTE-EEECSCHHHHTT
T ss_pred             CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCC---Cccce-EEEECCHHHHHH
Confidence            58999999999999987777778999999999999999998754211   00233 777777776644

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.38  E-value=4.3e-07  Score=78.62  Aligned_cols=72  Identities=10%  Similarity=-0.034  Sum_probs=52.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCC------CCC------CCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN------HMA------PDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~------~~~------~~~~rv~n~~~vgLQdF~  225 (232)
                      ..+|||+|||.|+.+.. |++...+|+.||.++.+++.|++..+..+      ..+      ....+| +|++..+.++.
T Consensus        69 ~~~vLD~GCG~G~~~~~-La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~D~~~l~  146 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKW-FADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI-SLYCCSIFDLP  146 (252)
T ss_dssp             SCEEEETTCTTCTHHHH-HHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEESCTTTGG
T ss_pred             CCeEEEeCCCCcHHHHH-HHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce-EEEECccccCC
Confidence            36899999999999987 45555599999999999999987653100      000      001344 89999999988


Q ss_pred             CC--CCCC
Q 026812          226 NI--IQYH  231 (232)
Q Consensus       226 Pe--~~YD  231 (232)
                      +.  ..||
T Consensus       147 ~~~~~~FD  154 (252)
T 2gb4_A          147 RANIGKFD  154 (252)
T ss_dssp             GGCCCCEE
T ss_pred             cccCCCEE
Confidence            75  5776

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.38  E-value=3.5e-07  Score=78.01  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++. ...+|..||+++.|++.|++++.          ++ ++.+..++++.++..||
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~----------~~-~~~~~d~~~~~~~~~fD  119 (279)
T 3ccf_A           58 GEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP----------HL-HFDVADARNFRVDKPLD  119 (279)
T ss_dssp             TCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT----------TS-CEEECCTTTCCCSSCEE
T ss_pred             CCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC----------CC-EEEECChhhCCcCCCcC
Confidence            45899999999999988655 56799999999999999998751          22 67888888776655666

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.37  E-value=4.1e-07  Score=76.63  Aligned_cols=62  Identities=21%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|+++.. |++.+.+|..||+++.+++.|++++.          ++ ++++..+.++.+...||
T Consensus        51 ~~~vLDiGcG~G~~~~~-l~~~~~~v~gvD~s~~~~~~a~~~~~----------~~-~~~~~d~~~~~~~~~fD  112 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRH-LADSFGTVEGLELSADMLAIARRRNP----------DA-VLHHGDMRDFSLGRRFS  112 (263)
T ss_dssp             CCEEEEETCTTSHHHHH-HTTTSSEEEEEESCHHHHHHHHHHCT----------TS-EEEECCTTTCCCSCCEE
T ss_pred             CCcEEEeCCcCCHHHHH-HHHcCCeEEEEECCHHHHHHHHhhCC----------CC-EEEECChHHCCccCCcC
Confidence            36899999999999987 45556799999999999999999762          33 78888888877656676

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.37  E-value=4.4e-07  Score=73.42  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=53.3

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++... ..+|++||+++.+++.|++++.....     .. .++++..+.++.|...||
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~-v~~~~~d~~~~~~~~~~D  134 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-----EN-IEPVQSRVEEFPSEPPFD  134 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-----SS-EEEEECCTTTSCCCSCEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CC-eEEEecchhhCCccCCcC
Confidence            3589999999999998855443 46999999999999999998754211     22 388899998887666776

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.36  E-value=4.4e-07  Score=75.85  Aligned_cols=66  Identities=15%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|+++..++.....+|..||+++.+++.|++.+..        .++ ++.+..++++.. +..||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~~~~d~~~~~~~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS--------PVV-CYEQKAIEDIAIEPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC--------TTE-EEEECCGGGCCCCTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc--------CCe-EEEEcchhhCCCCCCCeE
Confidence            4468999999999999886655555999999999999999998742        344 788888887764 34676

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.36  E-value=7.5e-07  Score=73.24  Aligned_cols=65  Identities=17%  Similarity=0.090  Sum_probs=50.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|+++..++...+.+|..||+++.+++.|++++..        .++ ++.+..+.++.. ...||
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~--------~~~-~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--------TGI-TYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--------SSE-EEEECCGGGCCCCTTCEE
T ss_pred             CCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc--------CCc-eEEEcChhhccCCCCCce
Confidence            468999999999999876555444999999999999999997643        233 778888877653 34666

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.36  E-value=2e-06  Score=74.61  Aligned_cols=68  Identities=15%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||.|.++..++.....+|+.||+++.+++.|++.+.....    ..++ ++.+..++++.  ..||
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~--~~fD  157 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT----NRSR-QVLLQGWEDFA--EPVD  157 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC----SSCE-EEEESCGGGCC--CCCS
T ss_pred             CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEECChHHCC--CCcC
Confidence            3468999999999999886555356999999999999999998754211    1233 77888887763  5676

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.35  E-value=4.9e-07  Score=76.50  Aligned_cols=70  Identities=16%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|..+..+......+|..||+++.+++.|++++.....    ..++ ++.+..++++.. ...||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~fD  116 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL----QNRV-TGIVGSMDDLPFRNEELD  116 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCCCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC----CcCc-EEEEcChhhCCCCCCCEE
Confidence            4468999999999999886555345999999999999999998754211    1344 889999988763 45676

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.35  E-value=7.9e-07  Score=72.30  Aligned_cols=68  Identities=15%  Similarity=0.115  Sum_probs=50.9

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      +..++||+|||+|.++..+ ++.+  .+|.+||+++.+++.|++++.....     .++ ++++..+.++.+. ..||
T Consensus        40 ~~~~vLDiG~G~G~~~~~l-a~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~~D  110 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEA-SNLMPNGRIFALERNPQYLGFIRDNLKKFVA-----RNV-TLVEAFAPEGLDDLPDPD  110 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHH-HHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-----TTE-EEEECCTTTTCTTSCCCS
T ss_pred             CCCEEEEECCCCCHHHHHH-HHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CcE-EEEeCChhhhhhcCCCCC
Confidence            3468999999999999874 5555  7999999999999999998754211     233 7778777555443 4676

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.35  E-value=1.1e-06  Score=71.51  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=57.2

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      ...++..+..        .+..++||+|||.|.++..++...  ..+|..||+++.+++.|++++.....     .++ +
T Consensus        26 ~~~~~~~~~~--------~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~-~   91 (219)
T 3dh0_A           26 PEKVLKEFGL--------KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-----KNV-E   91 (219)
T ss_dssp             HHHHHHHHTC--------CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-----TTE-E
T ss_pred             HHHHHHHhCC--------CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----CcE-E
Confidence            3556666543        234689999999999998755443  26999999999999999988744211     233 7


Q ss_pred             EEEecCCCccC-CCCCC
Q 026812          216 FFCVPLQVITN-IIQYH  231 (232)
Q Consensus       216 ~~~vgLQdF~P-e~~YD  231 (232)
                      +++..+.++.. +..||
T Consensus        92 ~~~~d~~~~~~~~~~fD  108 (219)
T 3dh0_A           92 VLKSEENKIPLPDNTVD  108 (219)
T ss_dssp             EEECBTTBCSSCSSCEE
T ss_pred             EEecccccCCCCCCCee
Confidence            88888887653 34666

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.35  E-value=4.7e-07  Score=74.27  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|+++..++ +.+.+|..||+++.+++.|++++.          ++ ++++..+.++.+...||
T Consensus        41 ~~~vLdiG~G~G~~~~~l~-~~~~~v~~~D~s~~~~~~a~~~~~----------~~-~~~~~d~~~~~~~~~~D  102 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFT-KEFGDTAGLELSEDMLTHARKRLP----------DA-TLHQGDMRDFRLGRKFS  102 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHH-HHHSEEEEEESCHHHHHHHHHHCT----------TC-EEEECCTTTCCCSSCEE
T ss_pred             CCeEEEecccCCHHHHHHH-HhCCcEEEEeCCHHHHHHHHHhCC----------CC-EEEECCHHHcccCCCCc
Confidence            3589999999999998754 445699999999999999998752          23 77888888776555665

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.35  E-value=6e-07  Score=76.90  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=51.5

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|..+..++...-.+|..||+++.+++.|++++.....    ..++ ++.+..+.++.. +..||
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~~fD  152 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL----ADNI-TVKYGSFLEIPCEDNSYD  152 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC----TTTE-EEEECCTTSCSSCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC----Ccce-EEEEcCcccCCCCCCCEe
Confidence            3468999999999999986554345999999999999999987643111    1234 788888877653 34666

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.34  E-value=2.6e-07  Score=76.91  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=54.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|.++..+ ++.+.+|..||.++.+++.|++++.....    ..++ ++++..+.++.+...||
T Consensus        79 ~~~vLD~gcG~G~~~~~l-a~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~~D  146 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQF-ALTGMRVIAIDIDPVKIALARNNAEVYGI----ADKI-EFICGDFLLLASFLKAD  146 (241)
T ss_dssp             CSEEEETTCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGE-EEEESCHHHHGGGCCCS
T ss_pred             CCEEEECccccCHHHHHH-HHcCCEEEEEECCHHHHHHHHHHHHHcCC----CcCe-EEEECChHHhcccCCCC
Confidence            358999999999999874 55568999999999999999998754211    0233 88888888887767787

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.34  E-value=5.5e-07  Score=77.71  Aligned_cols=66  Identities=12%  Similarity=0.130  Sum_probs=51.4

Q ss_pred             cceeeeccCCccccchHHHHh--hccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          157 QHLVALDCGSGIGRITKNLLI--RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl--~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      +..+|||+|||+|.++..|+.  +.+.+|..||+++.|++.|++++.....   ...++ +|++..++++..
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~v-~~~~~d~~~~~~  103 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD---TYKNV-SFKISSSDDFKF  103 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC----CCTTE-EEEECCTTCCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccC---CCCce-EEEEcCHHhCCc
Confidence            346899999999999998664  4478999999999999999998754200   01344 889999988763

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.34  E-value=1.2e-06  Score=73.76  Aligned_cols=70  Identities=14%  Similarity=0.097  Sum_probs=52.5

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||.|..+..++.....+|+.||+++.+++.|++++.....    ..++ ++.+..+.++.. +..||
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~~fD  131 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL----ANRV-TFSYADAMDLPFEDASFD  131 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCSCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC----Ccce-EEEECccccCCCCCCCcc
Confidence            3469999999999999886555567999999999999999988744211    1244 788888877643 34666

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.33  E-value=1.1e-06  Score=71.49  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=52.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|+++..++.. ..+|..||+++.+++.|++++...........+ .++++..++++.. +..||
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGK-AEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCE-EEEEECCTTSCCSCTTCEE
T ss_pred             CCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcc-eEEEEecccccCCCCCcee
Confidence            358999999999999875554 669999999999999999987552210000112 3788888888763 34666

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.33  E-value=1.2e-06  Score=72.72  Aligned_cols=68  Identities=9%  Similarity=0.057  Sum_probs=51.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|.++..+.. ...+|..||+++.+++.|++++.....    .+++ ++++..+.++-+ ...||
T Consensus        56 ~~~vLDlGcG~G~~~~~la~-~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v-~~~~~d~~~~~~~~~~~D  124 (204)
T 3njr_A           56 GELLWDIGGGSGSVSVEWCL-AGGRAITIEPRADRIENIQKNIDTYGL----SPRM-RAVQGTAPAALADLPLPE  124 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEESCTTGGGTTSCCCS
T ss_pred             CCEEEEecCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCE-EEEeCchhhhcccCCCCC
Confidence            46899999999999987554 488999999999999999998754211    1244 788888887433 34676

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.32  E-value=4.4e-07  Score=77.27  Aligned_cols=68  Identities=21%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC---CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN---IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P---e~~YD  231 (232)
                      ..++||+|||+|.++.. |++.+ .+|++||.++.+++.|++++.....    ..++ ++++..++++.+   ..+||
T Consensus        50 ~~~vLDlG~G~G~~~~~-la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~----~~~v-~~~~~D~~~~~~~~~~~~fD  121 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLL-LSTRTKAKIVGVEIQERLADMAKRSVAYNQL----EDQI-EIIEYDLKKITDLIPKERAD  121 (259)
T ss_dssp             CCEEEETTCTTTHHHHH-HHTTCCCEEEEECCSHHHHHHHHHHHHHTTC----TTTE-EEECSCGGGGGGTSCTTCEE
T ss_pred             CCEEEEcCCchhHHHHH-HHHhcCCcEEEEECCHHHHHHHHHHHHHCCC----cccE-EEEECcHHHhhhhhccCCcc
Confidence            46899999999999986 55555 4999999999999999999865433    2344 889999988764   45676

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.31  E-value=1.4e-06  Score=71.31  Aligned_cols=72  Identities=15%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|+++..| ++.+  .+|..||+++.+++.|++++...........++ ++++..+.+... ...||
T Consensus        30 ~~~vLDiGcG~G~~~~~l-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD  104 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLL-LKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI-SLFQSSLVYRDKRFSGYD  104 (219)
T ss_dssp             CCEEEEETCTTCHHHHHH-HTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE-EEEECCSSSCCGGGTTCS
T ss_pred             CCEEEEecCCCCHHHHHH-HhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcce-EEEeCcccccccccCCCC
Confidence            358999999999999874 4544  699999999999999999875421100000134 788888865543 24777

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.31  E-value=1.6e-07  Score=74.24  Aligned_cols=64  Identities=19%  Similarity=0.095  Sum_probs=49.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|.++..++...+.+|..||.++.+++.|++++.....    ..++ ++++..+.++.+
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~  108 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE----PEKF-EVRKMDANRALE  108 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC----GGGE-EEEESCHHHHHH
T ss_pred             CCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC----Ccce-EEEECcHHHHHH
Confidence            458999999999999987665567999999999999999998754211    1233 778877776543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.31  E-value=1.1e-06  Score=70.63  Aligned_cols=66  Identities=14%  Similarity=0.141  Sum_probs=51.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..+|||+|||.|+++..++...+.+|..||+++.+++.|++++...       .++ ++.+..+.++.. ...||
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~-------~~i-~~~~~d~~~~~~~~~~fD  109 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV-------PQL-RWETMDVRKLDFPSASFD  109 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC-------TTC-EEEECCTTSCCSCSSCEE
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC-------CCc-EEEEcchhcCCCCCCccc
Confidence            4689999999999999866665569999999999999999987541       233 778888887642 24665

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.31  E-value=1e-06  Score=71.05  Aligned_cols=67  Identities=16%  Similarity=0.070  Sum_probs=51.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||.|.++..+|.....+|..||+++.+++.|++++....      .++ ++.+..+.++.. +..||
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~-~~~~~d~~~~~~~~~~fD   91 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN------FKL-NISKGDIRKLPFKDESMS   91 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT------CCC-CEEECCTTSCCSCTTCEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------Cce-EEEECchhhCCCCCCcee
Confidence            36899999999999777777766799999999999999998764311      223 677888877653 34565

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.30  E-value=3.5e-07  Score=76.40  Aligned_cols=67  Identities=13%  Similarity=0.054  Sum_probs=50.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc--c-CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI--T-NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF--~-Pe~~YD  231 (232)
                      ..+|||+|||+|.++..|....+.+|+.||+++.|++.|+++.....      .++ ++++..++++  . ++..||
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~------~~v-~~~~~d~~~~~~~~~~~~fD  130 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT------HKV-IPLKGLWEDVAPTLPDGHFD  130 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS------SEE-EEEESCHHHHGGGSCTTCEE
T ss_pred             CCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC------CCe-EEEecCHHHhhcccCCCceE
Confidence            46899999999999987643345699999999999999999875421      233 7777777776  2 234666

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.30  E-value=7.4e-07  Score=70.92  Aligned_cols=67  Identities=24%  Similarity=0.152  Sum_probs=50.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||.|+++..+... ..+|..||+++.+++.|++++.....     ..+ ++.+..+.++.+...||
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~-~~~~~d~~~~~~~~~~D   99 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-----DNL-HTRVVDLNNLTFDRQYD   99 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC-----TTE-EEEECCGGGCCCCCCEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC-----CCc-EEEEcchhhCCCCCCce
Confidence            358999999999999875544 56999999999999999987643111     133 77888887765545665

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.29  E-value=1.5e-06  Score=70.75  Aligned_cols=66  Identities=18%  Similarity=0.175  Sum_probs=51.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      ..++||+|||+|.++.. |++.+.+|+.||+++.+++.|++++...      ..++ ++.+..+.++. +...||
T Consensus        39 ~~~vLDlG~G~G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~-~~~~~d~~~~~~~~~~~D  105 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFL-LEDYGFEVVGVDISEDMIRKAREYAKSR------ESNV-EFIVGDARKLSFEDKTFD  105 (227)
T ss_dssp             CCEEEEETCTTSHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCC-EEEECCTTSCCSCTTCEE
T ss_pred             CCeEEEEeccCCHHHHH-HHHcCCEEEEEECCHHHHHHHHHHHHhc------CCCc-eEEECchhcCCCCCCcEE
Confidence            46899999999999976 5555669999999999999999987442      1233 78888888765 334676

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.29  E-value=6.1e-07  Score=78.04  Aligned_cols=69  Identities=10%  Similarity=0.031  Sum_probs=54.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.+|..+......+|..||.++.+++.|++++.....    .+++ ++++..+.++.+...||
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~----~~~v-~~~~~D~~~~~~~~~fD  194 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----EDRM-SAYNMDNRDFPGENIAD  194 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC----TTTE-EEECSCTTTCCCCSCEE
T ss_pred             CCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC----CceE-EEEECCHHHhcccCCcc
Confidence            358999999999999986555455799999999999999998754211    1233 78888998888766776

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.29  E-value=3.7e-07  Score=79.83  Aligned_cols=99  Identities=9%  Similarity=-0.037  Sum_probs=67.6

Q ss_pred             ccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812          122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       122 GMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      -+|+|. ..+..|......++..+.....     ....+|||+|||+|.++..+|.. ..+|++||.++.+++.|++++.
T Consensus        43 l~ldg~-q~~~~d~~~y~e~l~~~~~~~~-----~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~  115 (262)
T 2cmg_A           43 AMLNRQ-LLFKNFLHIESELLAHMGGCTK-----KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFP  115 (262)
T ss_dssp             EEETTE-EEEGGGTHHHHHHHHHHHHTTS-----SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTST
T ss_pred             EEEcCc-ccccchHHHHHHHHHHHhhhcC-----CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHH
Confidence            478888 8888886666777776643211     23368999999999999998877 4899999999999999998874


Q ss_pred             CCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          202 PENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ... .+-+..++ ++++....+|.  .+||
T Consensus       116 ~~~-~~~~~~rv-~~~~~D~~~~~--~~fD  141 (262)
T 2cmg_A          116 HFH-EVKNNKNF-THAKQLLDLDI--KKYD  141 (262)
T ss_dssp             THH-HHHTCTTE-EEESSGGGSCC--CCEE
T ss_pred             hhc-cccCCCeE-EEEechHHHHH--hhCC
Confidence            310 00012344 55555544443  4555

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.28  E-value=1.4e-06  Score=71.38  Aligned_cols=72  Identities=17%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||+|||+|+++..+ ++.+  .+|..||+++.+++.|++++...........++ ++++..+...... ..||
T Consensus        30 ~~~vLDiGcG~G~~~~~l-~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD  104 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKIL-LKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERL-QLIQGALTYQDKRFHGYD  104 (217)
T ss_dssp             CCEEEEETCTTCHHHHHH-HHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTE-EEEECCTTSCCGGGCSCS
T ss_pred             CCEEEEeCCCCCHHHHHH-HhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcce-EEEeCCcccccccCCCcC
Confidence            358999999999999875 4443  699999999999999999875421100000134 7888888655432 4777

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.28  E-value=1.6e-06  Score=69.91  Aligned_cols=64  Identities=19%  Similarity=0.032  Sum_probs=49.0

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ++||+|||+|+.+..++ +...+|..||+++.+++.|++++....      .++ ++++..+.++.. ...||
T Consensus        32 ~vLdiGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~-~~~~~d~~~~~~~~~~fD   96 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLA-SLGYEVTAVDQSSVGLAKAKQLAQEKG------VKI-TTVQSNLADFDIVADAWE   96 (202)
T ss_dssp             EEEECCCSCTHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHT------CCE-EEECCBTTTBSCCTTTCS
T ss_pred             CEEEECCCCCHhHHHHH-hCCCeEEEEECCHHHHHHHHHHHHhcC------Cce-EEEEcChhhcCCCcCCcc
Confidence            89999999999998754 445699999999999999998864310      123 677778877653 34777

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.27  E-value=1.2e-06  Score=75.34  Aligned_cols=111  Identities=16%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             hhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cC
Q 026812          104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FN  181 (232)
Q Consensus       104 ~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~  181 (232)
                      ..|.....-|+...+        ...+...+-.-.+.|+..+.......  .....++||+|||+|.++.. |+..  ..
T Consensus        37 ~~~~~~l~~~~~~~n--------l~~i~~~~~~~~~~~~ds~~~l~~~~--~~~~~~vLDiG~G~G~~~i~-la~~~~~~  105 (249)
T 3g89_A           37 SRLYALLQEASGKVN--------LTALRGEEEVVVKHFLDSLTLLRLPL--WQGPLRVLDLGTGAGFPGLP-LKIVRPEL  105 (249)
T ss_dssp             HHHHHHHHHC------------------CHHHHHHHHHHHHHGGGGSSC--CCSSCEEEEETCTTTTTHHH-HHHHCTTC
T ss_pred             HHHHHHHHHHhcCCC--------CceECCHHHHhhceeeechhhhcccc--cCCCCEEEEEcCCCCHHHHH-HHHHCCCC
Confidence            457778888876532        23344444445677888765422111  12346899999999999987 4544  35


Q ss_pred             eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC----CCCC
Q 026812          182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI----IQYH  231 (232)
Q Consensus       182 ~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe----~~YD  231 (232)
                      +|++||+++++++.|++++.....     ..| ++++..++++.+.    ..||
T Consensus       106 ~v~~vD~s~~~~~~a~~~~~~~~l-----~~v-~~~~~d~~~~~~~~~~~~~fD  153 (249)
T 3g89_A          106 ELVLVDATRKKVAFVERAIEVLGL-----KGA-RALWGRAEVLAREAGHREAYA  153 (249)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHTC-----SSE-EEEECCHHHHTTSTTTTTCEE
T ss_pred             EEEEEECCHHHHHHHHHHHHHhCC-----Cce-EEEECcHHHhhcccccCCCce
Confidence            999999999999999998755221     223 8899999888653    4676

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.27  E-value=1.5e-06  Score=72.23  Aligned_cols=67  Identities=22%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.+|..++ +...+|..||+++.+++.|++++...      ..++ ++.+..++++.. +..||
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~-~~~~~d~~~~~~~~~~fD  106 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLI-ARGYRYIALDADAAMLEVFRQKIAGV------DRKV-QVVQADARAIPLPDESVH  106 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHH-TTTCEEEEEESCHHHHHHHHHHTTTS------CTTE-EEEESCTTSCCSCTTCEE
T ss_pred             CCCEEEEeCCcCCHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhhcc------CCce-EEEEcccccCCCCCCCee
Confidence            34689999999999998754 45679999999999999999987221      1334 788888887753 34666

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.27  E-value=7.8e-07  Score=74.04  Aligned_cols=46  Identities=17%  Similarity=0.076  Sum_probs=38.5

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||+|||+|+++..+....+.+|..||+++.|++.|++.+..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~  101 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKK  101 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhc
Confidence            4579999999999999864444345999999999999999998754

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.26  E-value=1.5e-06  Score=72.66  Aligned_cols=68  Identities=13%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      +..++||+|||.|.++.. |++.+.+|..||+++.+++.|++++.....     .++ ++.+..++++... ..||
T Consensus        21 ~~~~vLDiGcG~G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~fD   89 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALA-FSPYVQECIGVDATKEMVEVASSFAQEKGV-----ENV-RFQQGTAESLPFPDDSFD   89 (239)
T ss_dssp             TTCEEEEESCTTSHHHHH-HGGGSSEEEEEESCHHHHHHHHHHHHHHTC-----CSE-EEEECBTTBCCSCTTCEE
T ss_pred             CCCEEEEEccCcCHHHHH-HHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----CCe-EEEecccccCCCCCCcEE
Confidence            446899999999999987 556667999999999999999987643110     233 7788888776533 4666

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.26  E-value=1.6e-06  Score=71.00  Aligned_cols=66  Identities=18%  Similarity=0.272  Sum_probs=50.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|+++..+ ++...+|+.||+++.+++.|++++....      .++ ++++..+.++.+...||
T Consensus        38 ~~~vLdiG~G~G~~~~~l-~~~~~~~~~~D~s~~~~~~a~~~~~~~~------~~~-~~~~~d~~~~~~~~~fD  103 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENL-CPKFKNTWAVDLSQEMLSEAENKFRSQG------LKP-RLACQDISNLNINRKFD  103 (246)
T ss_dssp             TTEEEEETCTTSTTHHHH-GGGSSEEEEECSCHHHHHHHHHHHHHTT------CCC-EEECCCGGGCCCSCCEE
T ss_pred             CCeEEEeCCCCCHHHHHH-HHCCCcEEEEECCHHHHHHHHHHHhhcC------CCe-EEEecccccCCccCCce
Confidence            458999999999999875 4556799999999999999998874311      133 77888887776545665

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.25  E-value=1.1e-06  Score=71.32  Aligned_cols=68  Identities=18%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|..|.. |++...+|..||+++.+++.|++++.....     .++ ++.+..+.+..+ ...||
T Consensus        77 ~~~~vLdiG~G~G~~~~~-la~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~~D  145 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAI-LAHLVQHVCSVERIKGLQWQARRRLKNLDL-----HNV-STRHGDGWQGWQARAPFD  145 (210)
T ss_dssp             TTCEEEEECCTTSHHHHH-HHHHSSEEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEESCGGGCCGGGCCEE
T ss_pred             CCCEEEEEcCCCCHHHHH-HHHhCCEEEEEecCHHHHHHHHHHHHHcCC-----Cce-EEEECCcccCCccCCCcc
Confidence            346899999999999986 555588999999999999999998754211     233 677776655433 34666

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.25  E-value=8.4e-07  Score=71.63  Aligned_cols=52  Identities=29%  Similarity=0.290  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~  199 (232)
                      ..++..+...        ...++||+|||+|+++..++ +...+|..||+++.+++.|+++
T Consensus        42 ~~~~~~~~~~--------~~~~vLdiG~G~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~   93 (227)
T 3e8s_A           42 QAILLAILGR--------QPERVLDLGCGEGWLLRALA-DRGIEAVGVDGDRTLVDAARAA   93 (227)
T ss_dssp             HHHHHHHHHT--------CCSEEEEETCTTCHHHHHHH-TTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHHHhhcC--------CCCEEEEeCCCCCHHHHHHH-HCCCEEEEEcCCHHHHHHHHHh
Confidence            4566665542        23689999999999998754 4466999999999999999986

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.25  E-value=1.7e-06  Score=74.37  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|..+..|+...  ..+|..||+++.+++.|++++...+      .++ ++.+..+.++.++..||
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v-~~~~~d~~~~~~~~~fD   91 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YDS-EFLEGDATEIELNDKYD   91 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS------SEE-EEEESCTTTCCCSSCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC------Cce-EEEEcchhhcCcCCCee
Confidence            45799999999999998754332  3589999999999999999875422      234 88899999887766776

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.25  E-value=1.4e-06  Score=69.86  Aligned_cols=68  Identities=18%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      .++||+|||.|+++..++.....+|..||+++.+++.|++++.....    ..++ ++++..+.++.. +..||
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~~~D  113 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL----NDRI-QIVQGDVHNIPIEDNYAD  113 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEECBTTBCSSCTTCEE
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc----cCce-EEEEcCHHHCCCCccccc
Confidence            38999999999999886554345999999999999999998755221    1344 788888888653 34676

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.24  E-value=1.2e-06  Score=76.41  Aligned_cols=70  Identities=10%  Similarity=-0.050  Sum_probs=53.8

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      +..++||+|||+|.++..|+.....+|..||+++.+++.|++++.....    ..++ ++++..++++. +...||
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~fD  187 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI----DDHV-RSRVCNMLDTPFDKGAVT  187 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCCCTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCce-EEEECChhcCCCCCCCEe
Confidence            4568999999999999885554357999999999999999998754211    1244 88999998875 335776

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.24  E-value=2.5e-06  Score=67.09  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=54.1

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      ....+|..+..         +..++||+|||.|+++..+.. ...+|..||+++.+++.|++++..          + ++
T Consensus        35 ~~~~~l~~~~~---------~~~~vLdiG~G~G~~~~~l~~-~~~~v~~~D~~~~~~~~a~~~~~~----------~-~~   93 (195)
T 3cgg_A           35 GEARLIDAMAP---------RGAKILDAGCGQGRIGGYLSK-QGHDVLGTDLDPILIDYAKQDFPE----------A-RW   93 (195)
T ss_dssp             HHHHHHHHHSC---------TTCEEEEETCTTTHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCTT----------S-EE
T ss_pred             hHHHHHHHhcc---------CCCeEEEECCCCCHHHHHHHH-CCCcEEEEcCCHHHHHHHHHhCCC----------C-cE
Confidence            44567776633         235899999999999987554 466999999999999999997622          2 67


Q ss_pred             EEecCCCccC-CCCCC
Q 026812          217 FCVPLQVITN-IIQYH  231 (232)
Q Consensus       217 ~~vgLQdF~P-e~~YD  231 (232)
                      ++..+.++.. ...||
T Consensus        94 ~~~d~~~~~~~~~~~D  109 (195)
T 3cgg_A           94 VVGDLSVDQISETDFD  109 (195)
T ss_dssp             EECCTTTSCCCCCCEE
T ss_pred             EEcccccCCCCCCcee
Confidence            7777776543 23555

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.23  E-value=1.4e-06  Score=70.62  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=51.1

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|+++.. |++. ..+|..||+++.+++.|++++.....     .. .++++..+.++.+ ..||
T Consensus        61 ~~~vLDiG~G~G~~~~~-l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~-v~~~~~d~~~~~~-~~fD  127 (205)
T 3grz_A           61 PLTVADVGTGSGILAIA-AHKLGAKSVLATDISDESMTAAEENAALNGI-----YD-IALQKTSLLADVD-GKFD  127 (205)
T ss_dssp             CCEEEEETCTTSHHHHH-HHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CC-CEEEESSTTTTCC-SCEE
T ss_pred             CCEEEEECCCCCHHHHH-HHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----Cc-eEEEeccccccCC-CCce
Confidence            36899999999999987 4554 56999999999999999998754221     12 3888888887653 5666

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.22  E-value=1.5e-06  Score=74.09  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=52.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..+|||+|||+|+++..+. +...+|..||+++.+++.|++++.....    ..++ ++++..++++.  +...||
T Consensus        69 ~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~~fD  138 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMA-ERGHQVILCDLSAQMIDRAKQAAEAKGV----SDNM-QFIHCAAQDVASHLETPVD  138 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHC-CC----GGGE-EEEESCGGGTGGGCSSCEE
T ss_pred             CCEEEEeCCcchHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCC----Ccce-EEEEcCHHHhhhhcCCCce
Confidence            3689999999999998754 4467999999999999999998755211    1233 78888888876  445676

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.22  E-value=1.5e-06  Score=74.68  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC---CCCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP---ENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~---~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      +..++||+|||+|.++.. |++.+  .+|++||.++.+++.|++++..   ...    ..++ ++++..++++
T Consensus        36 ~~~~VLDlG~G~G~~~l~-la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----~~~v-~~~~~D~~~~  102 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMA-VAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF----SARI-EVLEADVTLR  102 (260)
T ss_dssp             SCEEEEECCSSSSHHHHH-HHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT----GGGE-EEEECCTTCC
T ss_pred             CCCEEEEeCChHhHHHHH-HHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC----cceE-EEEeCCHHHH
Confidence            346899999999999976 55554  5999999999999999999865   332    1244 8999999988

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.22  E-value=9.9e-07  Score=74.06  Aligned_cols=69  Identities=14%  Similarity=0.063  Sum_probs=53.2

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC---CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN---IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P---e~~YD  231 (232)
                      ..+|||+|||+|..|..|+... ..+|+.||+++.+++.|++++.....    ..+| ++++....++.|   ...||
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~~~fD  144 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF----ENQV-RIIEGNALEQFENVNDKVYD  144 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTE-EEEESCGGGCHHHHTTSCEE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECCHHHHHHhhccCCcc
Confidence            3589999999999998865522 57999999999999999998855321    1344 888888887755   45676

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.21  E-value=1.5e-06  Score=72.86  Aligned_cols=70  Identities=14%  Similarity=-0.003  Sum_probs=53.9

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|..+..++..+  ..+|..||.++.+++.|++++.....    .+++ ++++..+.+..|+..||
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~D  164 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF----DDRV-TIKLKDIYEGIEEENVD  164 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC----TTTE-EEECSCGGGCCCCCSEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC----CCce-EEEECchhhccCCCCcC
Confidence            34689999999999998865553  57999999999999999998754211    1334 78888887776666676

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.21  E-value=1.9e-06  Score=71.92  Aligned_cols=58  Identities=10%  Similarity=0.017  Sum_probs=45.2

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      +..++||+|||+|.++.. |++.+  .+|..||+++.+++.|+++....       ..+ .+++..+.+
T Consensus        74 ~~~~VLDlGcG~G~~~~~-la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~v-~~~~~d~~~  133 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSH-VADIADKGIVYAIEYAPRIMRELLDACAER-------ENI-IPILGDANK  133 (230)
T ss_dssp             TTCEEEEESCCSSHHHHH-HHHHTTTSEEEEEESCHHHHHHHHHHTTTC-------TTE-EEEECCTTC
T ss_pred             CCCEEEEEcccCCHHHHH-HHHHcCCcEEEEEECCHHHHHHHHHHhhcC-------CCe-EEEECCCCC
Confidence            346899999999999987 45555  79999999999999999986442       233 566666665

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.21  E-value=2e-06  Score=72.66  Aligned_cols=69  Identities=19%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..+|||+|||+|.++..+.... ..+|+.||+++.+++.|++++.....     .. .++++..+.++.+ ...||
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~-~~~~~~d~~~~~~~~~~fD  107 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-----KN-VKFLQANIFSLPFEDSSFD  107 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-----CS-EEEEECCGGGCCSCTTCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CC-cEEEEcccccCCCCCCCee
Confidence            45699999999999998755443 46999999999999999998754211     23 3778888887653 34666

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.21  E-value=3.6e-06  Score=73.58  Aligned_cols=61  Identities=11%  Similarity=0.161  Sum_probs=50.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      ..++||+|||+|.+|.. |++...+|.+||.++.|++.|++++...       .++ ++++..+.++.++
T Consensus        30 ~~~VLEIG~G~G~lt~~-La~~~~~V~avEid~~~~~~~~~~~~~~-------~~v-~~i~~D~~~~~~~   90 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDY-LLTECDNLALVEIDRDLVAFLQKKYNQQ-------KNI-TIYQNDALQFDFS   90 (255)
T ss_dssp             TCEEEEECCTTTTTHHH-HTTTSSEEEEEECCHHHHHHHHHHHTTC-------TTE-EEEESCTTTCCGG
T ss_pred             cCEEEEEcccccHHHHH-HHHhCCEEEEEECCHHHHHHHHHHHhhC-------CCc-EEEEcchHhCCHH
Confidence            46899999999999987 5556789999999999999999988541       344 7888888887643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.21  E-value=1.1e-06  Score=72.25  Aligned_cols=64  Identities=19%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|+++..++ +. .+|..||+++.+++.|++++...      ..++ ++.+..+.++.+...||
T Consensus        35 ~~vLdiG~G~G~~~~~l~-~~-~~v~~vD~s~~~~~~a~~~~~~~------~~~~-~~~~~d~~~~~~~~~fD   98 (243)
T 3d2l_A           35 KRIADIGCGTGTATLLLA-DH-YEVTGVDLSEEMLEIAQEKAMET------NRHV-DFWVQDMRELELPEPVD   98 (243)
T ss_dssp             CEEEEESCTTCHHHHHHT-TT-SEEEEEESCHHHHHHHHHHHHHT------TCCC-EEEECCGGGCCCSSCEE
T ss_pred             CeEEEecCCCCHHHHHHh-hC-CeEEEEECCHHHHHHHHHhhhhc------CCce-EEEEcChhhcCCCCCcC
Confidence            689999999999998754 44 79999999999999999887431      1233 77888888776555665

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.21  E-value=4.4e-07  Score=71.86  Aligned_cols=62  Identities=11%  Similarity=0.073  Sum_probs=47.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|.++..++...+.+|..||+++.+++.|++++.....    ..++ ++++..+.++
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~   93 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA----ENRF-TLLKMEAERA   93 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC----GGGE-EEECSCHHHH
T ss_pred             CCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC----CCce-EEEECcHHHh
Confidence            358999999999999886655467999999999999999998855211    1133 6777777665

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.20  E-value=1.1e-06  Score=68.87  Aligned_cols=42  Identities=24%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~  199 (232)
                      +..++||+|||.|+++..++.. +.+|..||+++.+++.|+++
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEF-ATKLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTT-EEEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhh-cCeEEEEeCCHHHHHHHHHh
Confidence            3468999999999999875544 45999999999999999987

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.20  E-value=2.1e-06  Score=70.68  Aligned_cols=65  Identities=17%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC-ccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV-ITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd-F~Pe~~YD  231 (232)
                      ..++||+|||+|.+|..+ ++.+.+|..||+++.+++.|++++...       .++ ++.+..+.+ +.+...||
T Consensus        71 ~~~vLdiG~G~G~~~~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~v-~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           71 GQKVLEIGTGIGYYTALI-AEIVDKVVSVEINEKMYNYASKLLSYY-------NNI-KLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             TCEEEEECCTTSHHHHHH-HHHSSEEEEEESCHHHHHHHHHHHTTC-------SSE-EEEESCGGGCCGGGCCEE
T ss_pred             CCEEEEEcCCCCHHHHHH-HHHcCEEEEEeCCHHHHHHHHHHHhhc-------CCe-EEEECCcccccccCCCcc
Confidence            468999999999999874 555689999999999999999988542       133 677777766 32334665

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.20  E-value=1.2e-06  Score=70.58  Aligned_cols=69  Identities=13%  Similarity=-0.010  Sum_probs=50.5

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..++||+|||+|.+|..++...  ..+|..||.++.+++.|++++.....    ..++ ++++..++++.  ++..||
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~~fD   95 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL----IDRV-TLIKDGHQNMDKYIDCPVK   95 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC----GGGE-EEECSCGGGGGGTCCSCEE
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCe-EEEECCHHHHhhhccCCce
Confidence            3689999999999998754442  24999999999999999998755211    1233 78888877763  334665

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.20  E-value=4.2e-06  Score=73.37  Aligned_cols=68  Identities=15%  Similarity=0.138  Sum_probs=51.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|.+|..| ++...+|.+||+++.|++.|++++.....    ..++ ++++..+.++..+ .||
T Consensus        28 ~~~~VLDiG~G~G~lt~~L-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v-~~~~~D~~~~~~~-~fD   95 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKL-LEKAKKVVACELDPRLVAELHKRVQGTPV----ASKL-QVLVGDVLKTDLP-FFD   95 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHH-HHHSSEEEEEESCHHHHHHHHHHHTTSTT----GGGE-EEEESCTTTSCCC-CCS
T ss_pred             CCCEEEEEcCcccHHHHHH-HhhCCEEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEEcceecccch-hhc
Confidence            3468999999999999875 45567999999999999999998754211    0233 7888888776433 565

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.19  E-value=1.1e-06  Score=77.79  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=63.9

Q ss_pred             ccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          124 LGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       124 LGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      |.|....+..|-..-..+|..+.....     ....+|||+|||.|.++..++... ..+|++||+++.+++.|++++..
T Consensus        67 ldg~~~~~~~de~~y~e~l~~~~l~~~-----~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~  141 (304)
T 3bwc_A           67 LDGCIQVTDYDEFVYHEVLGHTSLCSH-----PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQ  141 (304)
T ss_dssp             ETTEEEEETTTHHHHHHHHHHHHHTTS-----SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHH
T ss_pred             ECCeeeeecccchHHHHHHhhhhhhcC-----CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            444444444553334556666533111     234689999999999999866442 47999999999999999998721


Q ss_pred             CCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812          203 ENHMAPDMHKATNFFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       203 ~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD  231 (232)
                      ... .....++ ++++....+|.   +..+||
T Consensus       142 ~~~-~~~~~~v-~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A          142 ISR-SLADPRA-TVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             HHG-GGGCTTE-EEEESCHHHHHHSSCTTCEE
T ss_pred             hhc-ccCCCcE-EEEECcHHHHHHhccCCcee
Confidence            000 0012344 77777776664   345676

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.19  E-value=1.2e-06  Score=79.34  Aligned_cols=157  Identities=15%  Similarity=0.152  Sum_probs=80.0

Q ss_pred             ccccccccCCCCCcccCHHHHHHHHhcc--CCchhhhh-hh-hhhhhhhcccCC---ccc---hhccccCCCcccccchh
Q 026812           67 SAMEVSGLDSDGKEFKNAEEMWREQIGE--DGEQQEKK-TQ-WYREGISYWEGV---EAS---VDGVLGGFGNVNEVDIK  136 (232)
Q Consensus        67 ~~~~~~G~ds~g~~~~s~~emWk~~~~~--d~~~~~~~-~~-~Y~~a~~YWe~v---eaT---vdGMLGGf~~vs~~Di~  136 (232)
                      .+|...|.|++|+.+.++.++|-.+...  ++.....+ .+ -|... +-++.+   +..   ..=+|.|...+++.|-.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~w~~e~~~~~~~~~~~~~v~~vl~~~~-s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~  104 (334)
T 1xj5_A           26 METENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGK-SDYQDVIVFQSATYGKVLVLDGVIQLTERDEC  104 (334)
T ss_dssp             ---------------CCCCSSEEEECCTTSTTEEEEEEEEEEEEEEE-CSSCEEEEEEESSSCEEEEETTEEEEETTTHH
T ss_pred             hhcccCCCCCCCCCCcccccceEEEeccCCCCceEEEEeeeEEEEee-cCCeEEEEEEcCCCCeEEEECCEeecCcCcch
Confidence            5788889999999999999999766531  00000000 00 11111 111111   111   11245666667777754


Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      .-...|..+.....     ....+|||+|||.|.++..|+... ..+|++||+++.+++.|++++..... +-+..+| +
T Consensus       105 ~y~e~L~~l~l~~~-----~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~-gl~~~rv-~  177 (334)
T 1xj5_A          105 AYQEMITHLPLCSI-----PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI-GYEDPRV-N  177 (334)
T ss_dssp             HHHHHHHHHHHTTS-----SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-GGGSTTE-E
T ss_pred             HHHHHHHHHHHhhC-----CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc-ccCCCcE-E
Confidence            44566666543211     234689999999999999855432 47999999999999999998742100 0011344 7


Q ss_pred             EEEecCCCcc---CCCCCC
Q 026812          216 FFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       216 ~~~vgLQdF~---Pe~~YD  231 (232)
                      +++....+|-   ++..||
T Consensus       178 ~~~~D~~~~l~~~~~~~fD  196 (334)
T 1xj5_A          178 LVIGDGVAFLKNAAEGSYD  196 (334)
T ss_dssp             EEESCHHHHHHTSCTTCEE
T ss_pred             EEECCHHHHHHhccCCCcc
Confidence            7887766663   234666

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.18  E-value=1.1e-06  Score=76.73  Aligned_cols=101  Identities=14%  Similarity=0.077  Sum_probs=63.0

Q ss_pred             ccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          124 LGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       124 LGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      |+|....+..|.......|..+.....     ....+|||+|||.|.++..++... ..+|++||.++.+++.|++++..
T Consensus        47 ldg~~q~~~~de~~y~e~l~~~~l~~~-----~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~  121 (275)
T 1iy9_A           47 LDGMVMTSEKDEFVYHEMVAHVPLFTH-----PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPS  121 (275)
T ss_dssp             ETTEEEEETTTHHHHHHHHHHHHHHHS-----SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHH
T ss_pred             ECCEEeecccchhHHHHHHHHHHHhhC-----CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHh
Confidence            444444555564444555655421101     134689999999999999866542 47999999999999999998732


Q ss_pred             CCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          203 ENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       203 ~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      ... +-+..++ ++++....+|-+  ..+||
T Consensus       122 ~~~-~~~~~rv-~v~~~D~~~~l~~~~~~fD  150 (275)
T 1iy9_A          122 IAG-KLDDPRV-DVQVDDGFMHIAKSENQYD  150 (275)
T ss_dssp             HHT-TTTSTTE-EEEESCSHHHHHTCCSCEE
T ss_pred             hcc-ccCCCce-EEEECcHHHHHhhCCCCee
Confidence            000 0012455 777776655532  34665

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.18  E-value=3e-06  Score=72.62  Aligned_cols=62  Identities=18%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      ...++||+|||+|.+|..+ ++.+.+|.+||.++.|++.|++++...       .++ ++++..+.++.+.
T Consensus        30 ~~~~VLDiG~G~G~lt~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~~v-~~~~~D~~~~~~~   91 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLEL-VQRCNFVTAIEIDHKLCKTTENKLVDH-------DNF-QVLNKDILQFKFP   91 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHH-HHHSSEEEEECSCHHHHHHHHHHTTTC-------CSE-EEECCCGGGCCCC
T ss_pred             CCCEEEEEeCCchHHHHHH-HHcCCeEEEEECCHHHHHHHHHhhccC-------CCe-EEEEChHHhCCcc
Confidence            3468999999999999875 455689999999999999999987541       344 7788877776543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.17  E-value=2.4e-06  Score=72.23  Aligned_cols=69  Identities=14%  Similarity=-0.044  Sum_probs=51.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..+|||+|||+|+.+..++...+.+|..||+++.+++.|++++.....    ..++ ++.+..+.++.  ++..||
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~~fD  135 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR----RFKV-FFRAQDSYGRHMDLGKEFD  135 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC----SSEE-EEEESCTTTSCCCCSSCEE
T ss_pred             CCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC----CccE-EEEECCccccccCCCCCcC
Confidence            368999999999999885544456999999999999999998754211    1233 77888887654  344666

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.16  E-value=1.2e-06  Score=78.06  Aligned_cols=102  Identities=15%  Similarity=0.056  Sum_probs=64.3

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|....+..|-..-...|..+.....     ....+|||+|||+|.++..++... ..+|++||.++.+++.|++++.
T Consensus        66 ~ldg~~~~~~~de~~y~e~l~~~~l~~~-----~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~  140 (304)
T 2o07_A           66 VLDGVIQCTERDEFSYQEMIANLPLCSH-----PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP  140 (304)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHTTS-----SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             EECCEEEeecccchHHHHHHHHHHHhhC-----CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhH
Confidence            4556555556664444456665532111     234689999999999999865442 3799999999999999999874


Q ss_pred             CCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          202 PENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      .... +-+..++ ++++....+|-  ++.+||
T Consensus       141 ~~~~-~~~~~rv-~v~~~Da~~~l~~~~~~fD  170 (304)
T 2o07_A          141 GMAI-GYSSSKL-TLHVGDGFEFMKQNQDAFD  170 (304)
T ss_dssp             HHHG-GGGCTTE-EEEESCHHHHHHTCSSCEE
T ss_pred             Hhhc-ccCCCcE-EEEECcHHHHHhhCCCCce
Confidence            2000 0012444 67777665553  234666

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.16  E-value=7e-07  Score=73.31  Aligned_cols=62  Identities=11%  Similarity=-0.018  Sum_probs=47.4

Q ss_pred             eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      .+|||+|||+|..|..|+..+  ..+|..||+++.+++.|++++.....    ..+| ++++....++.
T Consensus        66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~  129 (225)
T 3tr6_A           66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL----SDKI-GLRLSPAKDTL  129 (225)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEESCHHHHH
T ss_pred             CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC----CCce-EEEeCCHHHHH
Confidence            589999999999998855442  46999999999999999998855321    1344 77777765553

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.16  E-value=3e-06  Score=68.61  Aligned_cols=65  Identities=22%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..+....+.+|..||+++.+++.|++++....      -++ ++++..+.++.  ..||
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~-~~~~~d~~~~~--~~~D  114 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK------GKF-KVFIGDVSEFN--SRVD  114 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT------TSE-EEEESCGGGCC--CCCS
T ss_pred             cCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC------CCE-EEEECchHHcC--CCCC
Confidence            46899999999999988555445689999999999999999875421      133 78888888763  2666

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.16  E-value=2.5e-06  Score=77.64  Aligned_cols=69  Identities=19%  Similarity=0.130  Sum_probs=54.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..+|||+|||+|.++..++.....+|.+||++ .|++.|++++.....    ..+| ++++..++++.++.+||
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~D  131 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNL----DHIV-EVIEGSVEDISLPEKVD  131 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTC----TTTE-EEEESCGGGCCCSSCEE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCC----CCeE-EEEECchhhcCcCCcce
Confidence            346899999999999987554445699999999 999999998755322    1344 89999999988766776

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.15  E-value=1.1e-06  Score=72.23  Aligned_cols=76  Identities=21%  Similarity=0.074  Sum_probs=53.6

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      ...||..+...       .+..++||+|||+|..|..|+...  ..+|+.||+++.+++.|++++.....    .++| +
T Consensus        46 ~~~~l~~l~~~-------~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v-~  113 (223)
T 3duw_A           46 QGKFLQLLVQI-------QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL----NDRV-E  113 (223)
T ss_dssp             HHHHHHHHHHH-------HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-E
T ss_pred             HHHHHHHHHHh-------hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-E
Confidence            35566665331       123589999999999998755443  46999999999999999998854221    2344 7


Q ss_pred             EEEecCCCcc
Q 026812          216 FFCVPLQVIT  225 (232)
Q Consensus       216 ~~~vgLQdF~  225 (232)
                      +++....++-
T Consensus       114 ~~~~d~~~~~  123 (223)
T 3duw_A          114 VRTGLALDSL  123 (223)
T ss_dssp             EEESCHHHHH
T ss_pred             EEEcCHHHHH
Confidence            7777766543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.14  E-value=1.1e-06  Score=73.91  Aligned_cols=69  Identities=13%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             cceeeeccCCccccchHHHHh-hccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC----CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN----IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl-~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P----e~~YD  231 (232)
                      ...++||+|||+|.++..+.. ....+|++||+++.+++.|++++.....     ..| ++++..++++..    ...||
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~~~~fD  143 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-----ENT-TFCHDRAETFGQRKDVRESYD  143 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-----SSE-EEEESCHHHHTTCTTTTTCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCE-EEEeccHHHhcccccccCCcc
Confidence            346899999999999987543 2246899999999999999988754211     233 788888887753    24676

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.14  E-value=4.6e-06  Score=67.57  Aligned_cols=60  Identities=17%  Similarity=0.192  Sum_probs=44.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||.|+.+..+   .+.+|..||+++.+++.|++++.          ++ ++.+..++++.. +..||
T Consensus        37 ~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~----------~~-~~~~~d~~~~~~~~~~fD   97 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAP----------EA-TWVRAWGEALPFPGESFD   97 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCT----------TS-EEECCCTTSCCSCSSCEE
T ss_pred             CCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCC----------Cc-EEEEcccccCCCCCCcEE
Confidence            358999999999999764   34599999999999999998751          12 566666666542 23555

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.14  E-value=2.8e-06  Score=68.78  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...++||+|||+|.++..+....+.+|..||+++.+++.|++++.          ++ ++++..+.++.  ..||
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----------~~-~~~~~d~~~~~--~~~D  112 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----------GV-NFMVADVSEIS--GKYD  112 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----------TS-EEEECCGGGCC--CCEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC----------CC-EEEECcHHHCC--CCee
Confidence            346899999999999987555446689999999999999999863          22 77777777652  3454

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.13  E-value=2e-06  Score=67.51  Aligned_cols=68  Identities=15%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||+|||.|.++..++. .+.+|..||+++.+++.|++++.....    ..++ ++++..+.++.|. ..||
T Consensus        34 ~~~vldiG~G~G~~~~~l~~-~~~~v~~~D~~~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~~~D  102 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGL----GDNV-TLMEGDAPEALCKIPDID  102 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTC----CTTE-EEEESCHHHHHTTSCCEE
T ss_pred             CCEEEEECCCCCHHHHHHHH-hcCEEEEEECCHHHHHHHHHHHHHcCC----Ccce-EEEecCHHHhcccCCCCC
Confidence            46899999999999987554 448999999999999999998754211    1233 6777776653333 3555

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.13  E-value=3.4e-06  Score=69.32  Aligned_cols=67  Identities=12%  Similarity=0.053  Sum_probs=50.0

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD  231 (232)
                      .++||+|||+|.++..+.... ..+|..||+++.+++.|++++.....     .++ ++++..+.++.   +...||
T Consensus        43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~~~~D  113 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-----PNI-KLLWVDGSDLTDYFEDGEID  113 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----SSE-EEEECCSSCGGGTSCTTCCS
T ss_pred             CeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-----CCE-EEEeCCHHHHHhhcCCCCCC
Confidence            579999999999998754443 25999999999999999998744211     233 78888888754   344666

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.12  E-value=2.1e-06  Score=73.42  Aligned_cols=47  Identities=17%  Similarity=0.077  Sum_probs=39.8

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..++||+|||+|..+..++.+.+.+|.+||.++.|++.|++.+..
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhc
Confidence            34578999999999998765566678899999999999999987744

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.12  E-value=4.6e-06  Score=73.92  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=47.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCe----eEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNE----VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII  228 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~----VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~  228 (232)
                      ..+|||+|||+|.+|..| ++.+.+    |.+||.++.|++.|+++. .        .++ ++++..+.++.++.
T Consensus        43 ~~~VLEIG~G~G~lt~~L-a~~~~~~~~~V~avDid~~~l~~a~~~~-~--------~~v-~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPV-IARLATPGSPLHAVELDRDLIGRLEQRF-G--------ELL-ELHAGDALTFDFGS  106 (279)
T ss_dssp             TCEEEEECCTTSTTHHHH-HHHHCBTTBCEEEEECCHHHHHHHHHHH-G--------GGE-EEEESCGGGCCGGG
T ss_pred             cCEEEEEccccHHHHHHH-HHhCCCcCCeEEEEECCHHHHHHHHHhc-C--------CCc-EEEECChhcCChhH
Confidence            468999999999999875 455666    999999999999999874 2        234 78888887776544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.12  E-value=2.2e-06  Score=78.53  Aligned_cols=84  Identities=18%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      +++.+|..+..        ....++||+|||+|.++..+.... ..+|..||.++.+++.|++++.....  .+...+ +
T Consensus       210 ~~~~ll~~l~~--------~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl--~~~~~v-~  278 (375)
T 4dcm_A          210 GARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP--EALDRC-E  278 (375)
T ss_dssp             HHHHHHHTCCC--------SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG--GGGGGE-E
T ss_pred             HHHHHHHhCcc--------cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC--CcCceE-E
Confidence            45555555433        123689999999999998855443 47999999999999999998754210  000123 6


Q ss_pred             EEEecCCCccCCCCCC
Q 026812          216 FFCVPLQVITNIIQYH  231 (232)
Q Consensus       216 ~~~vgLQdF~Pe~~YD  231 (232)
                      |++..+.+..+...||
T Consensus       279 ~~~~D~~~~~~~~~fD  294 (375)
T 4dcm_A          279 FMINNALSGVEPFRFN  294 (375)
T ss_dssp             EEECSTTTTCCTTCEE
T ss_pred             EEechhhccCCCCCee
Confidence            6888888766666776

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.11  E-value=1.6e-06  Score=76.04  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|+|....+..|-..-...|..+.....     ....+|||+|||.|.++..++... ..+|++||.++.+++.|++++.
T Consensus        49 ~ldg~~q~~~~~e~~Y~e~l~~~~l~~~-----~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~  123 (283)
T 2i7c_A           49 VLDGVIQLTEKDEFAYHEMMTHVPMTVS-----KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFK  123 (283)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHTTS-----SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCT
T ss_pred             EECCEeeecccchhhHHHHHHHHHHhcC-----CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhH
Confidence            4555545555553333445555433111     234689999999999999865442 4799999999999999999985


Q ss_pred             CCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          202 PENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      .... +-+..++ ++++....+|.+  ..+||
T Consensus       124 ~~~~-~~~~~~v-~~~~~D~~~~l~~~~~~fD  153 (283)
T 2i7c_A          124 NISC-GYEDKRV-NVFIEDASKFLENVTNTYD  153 (283)
T ss_dssp             TTSG-GGGSTTE-EEEESCHHHHHHHCCSCEE
T ss_pred             Hhcc-ccCCCcE-EEEECChHHHHHhCCCCce
Confidence            4210 0012344 777777666542  34565

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.10  E-value=1.4e-06  Score=73.57  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=58.2

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCC-CCc
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDM-HKA  213 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~-~rv  213 (232)
                      ....||..|.....    ..+..++||+|||+|..|..|+..+  ..+|+.||+++.+++.|++++.....    . .+|
T Consensus        40 ~~~~~l~~l~~~~~----~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~~i  111 (221)
T 3dr5_A           40 MTGQLLTTLAATTN----GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY----SPSRV  111 (221)
T ss_dssp             HHHHHHHHHHHHSC----CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC----CGGGE
T ss_pred             HHHHHHHHHHHhhC----CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CcCcE
Confidence            45677777654211    1223489999999999998865443  36999999999999999999865321    1 244


Q ss_pred             ceEEEecCCCccC---CCCCC
Q 026812          214 TNFFCVPLQVITN---IIQYH  231 (232)
Q Consensus       214 ~n~~~vgLQdF~P---e~~YD  231 (232)
                       ++++....++-|   +..||
T Consensus       112 -~~~~gda~~~l~~~~~~~fD  131 (221)
T 3dr5_A          112 -RFLLSRPLDVMSRLANDSYQ  131 (221)
T ss_dssp             -EEECSCHHHHGGGSCTTCEE
T ss_pred             -EEEEcCHHHHHHHhcCCCcC
Confidence             677766555533   34665

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.10  E-value=3.6e-06  Score=71.14  Aligned_cols=61  Identities=25%  Similarity=0.237  Sum_probs=47.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..+|||+|||+|+++..++ +...+|..||+++.+++.|+++...            ++.+..++++.. ...||
T Consensus        55 ~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~l~~a~~~~~~------------~~~~~d~~~~~~~~~~fD  116 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQ-ERGFEVVLVDPSKEMLEVAREKGVK------------NVVEAKAEDLPFPSGAFE  116 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHH-TTTCEEEEEESCHHHHHHHHHHTCS------------CEEECCTTSCCSCTTCEE
T ss_pred             CCeEEEeCCCcCHHHHHHH-HcCCeEEEEeCCHHHHHHHHhhcCC------------CEEECcHHHCCCCCCCEE
Confidence            3589999999999998754 4456999999999999999987521            367777776653 33565

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.10  E-value=1.5e-06  Score=72.03  Aligned_cols=75  Identities=9%  Similarity=0.038  Sum_probs=52.5

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      ...||..+...       .+..+|||+|||+|..|..|+...  ..+|+.||+++.+++.|++++.....    .++| +
T Consensus        46 ~~~~l~~l~~~-------~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v-~  113 (221)
T 3u81_A           46 KGQIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL----QDKV-T  113 (221)
T ss_dssp             HHHHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGE-E
T ss_pred             HHHHHHHHHHh-------cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC----CCce-E
Confidence            45566665431       123589999999999998754422  35999999999999999998754211    1344 7


Q ss_pred             EEEecCCCc
Q 026812          216 FFCVPLQVI  224 (232)
Q Consensus       216 ~~~vgLQdF  224 (232)
                      +++....++
T Consensus       114 ~~~~d~~~~  122 (221)
T 3u81_A          114 ILNGASQDL  122 (221)
T ss_dssp             EEESCHHHH
T ss_pred             EEECCHHHH
Confidence            777776554

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.10  E-value=5.8e-06  Score=73.09  Aligned_cols=66  Identities=14%  Similarity=0.183  Sum_probs=46.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.+|.. |++...+|.+||.++.+++.|++++.....     .++ ++++..+.++.+. .||
T Consensus        43 ~~~VLDiG~G~G~lt~~-La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-----~~v-~~~~~D~~~~~~~-~~D  108 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVK-LLPLAKKVITIDIDSRMISEVKKRCLYEGY-----NNL-EVYEGDAIKTVFP-KFD  108 (299)
T ss_dssp             TCEEEEECCTTSTTHHH-HTTTSSEEEEECSCHHHHHHHHHHHHHTTC-----CCE-EC----CCSSCCC-CCS
T ss_pred             cCEEEEEcCcCcHHHHH-HHhcCCEEEEEECCHHHHHHHHHHHHHcCC-----Cce-EEEECchhhCCcc-cCC
Confidence            46899999999999987 556678999999999999999998743111     233 6677777666443 565

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.09  E-value=2.1e-06  Score=82.17  Aligned_cols=67  Identities=13%  Similarity=0.112  Sum_probs=53.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD  231 (232)
                      ..+|||+|||.|.+|.. |++...+|+.||+++.+++.|+......+.     -.| +|.+..++++.   ++.+||
T Consensus        67 ~~~vLDvGCG~G~~~~~-la~~ga~V~giD~~~~~i~~a~~~a~~~~~-----~~~-~~~~~~~~~~~~~~~~~~fD  136 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLS-LASKGATIVGIDFQQENINVCRALAEENPD-----FAA-EFRVGRIEEVIAALEEGEFD  136 (569)
T ss_dssp             CCEEEEETCTTSHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHTSTT-----SEE-EEEECCHHHHHHHCCTTSCS
T ss_pred             CCeEEEECCCCcHHHHH-HHhCCCEEEEECCCHHHHHHHHHHHHhcCC-----Cce-EEEECCHHHHhhhccCCCcc
Confidence            46899999999999988 677778999999999999999987644221     134 88999998873   345788

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.09  E-value=2.1e-06  Score=74.56  Aligned_cols=70  Identities=11%  Similarity=-0.089  Sum_probs=53.0

Q ss_pred             cceeeeccCCccccchHHHH-hhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLL-IRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lL-l~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|+++..|. ... ..+|..||+++.+++.|++++.....    ..++ ++++..+.++.++..||
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~fD  189 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL----AGQI-TLHRQDAWKLDTREGYD  189 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT----GGGE-EEEECCGGGCCCCSCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC----CCce-EEEECchhcCCccCCeE
Confidence            34689999999999998753 222 35999999999999999999865221    1234 78898888876556776

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.08  E-value=3.8e-06  Score=72.19  Aligned_cols=69  Identities=14%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCC-CCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~-~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|.++..++...  ..+|..||+++.+++.|++++... .     ..++ ++++..+.++.++..||
T Consensus       110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g-----~~~v-~~~~~d~~~~~~~~~fD  181 (275)
T 1yb2_A          110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----IGNV-RTSRSDIADFISDQMYD  181 (275)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----CTTE-EEECSCTTTCCCSCCEE
T ss_pred             CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CCcE-EEEECchhccCcCCCcc
Confidence            34689999999999998765442  579999999999999999988542 1     1233 77888887766666676

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.08  E-value=2.1e-06  Score=73.09  Aligned_cols=82  Identities=20%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      ...||..+...       .+..+|||+|||+|..|..|+..+  ..+|..||.++.+++.|++++.....    ..+| +
T Consensus        51 ~~~~l~~l~~~-------~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~----~~~v-~  118 (248)
T 3tfw_A           51 QGQFLALLVRL-------TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV----DQRV-T  118 (248)
T ss_dssp             HHHHHHHHHHH-------HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC----TTTE-E
T ss_pred             HHHHHHHHHhh-------cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-E
Confidence            34566665331       123689999999999998754443  46999999999999999999865321    1344 7


Q ss_pred             EEEecCCCccC----CCCCC
Q 026812          216 FFCVPLQVITN----IIQYH  231 (232)
Q Consensus       216 ~~~vgLQdF~P----e~~YD  231 (232)
                      +.+....++-|    ...||
T Consensus       119 ~~~~d~~~~l~~~~~~~~fD  138 (248)
T 3tfw_A          119 LREGPALQSLESLGECPAFD  138 (248)
T ss_dssp             EEESCHHHHHHTCCSCCCCS
T ss_pred             EEEcCHHHHHHhcCCCCCeE
Confidence            77777666433    23676

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.08  E-value=6.6e-06  Score=68.49  Aligned_cols=69  Identities=20%  Similarity=0.234  Sum_probs=51.9

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCC-CCCCCCCCCcceEEEecCCCc-cCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQVI-TNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~-~~~~~~~~rv~n~~~vgLQdF-~Pe~~YD  231 (232)
                      +..++||+|||+|..+..++..+  ..+|..||+++.+++.|++++... .     ..++ ++.+..+.++ -++..||
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-----~~~v-~~~~~d~~~~~~~~~~~D  168 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-----VENV-RFHLGKLEEAELEEAAYD  168 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----CCCE-EEEESCGGGCCCCTTCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CCCE-EEEECchhhcCCCCCCcC
Confidence            34689999999999998755543  579999999999999999987431 1     1334 7888888776 3444666

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.08  E-value=3.9e-06  Score=75.34  Aligned_cols=69  Identities=13%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..+|||+|||+|.++..++.....+|.+||+++ +++.|++++.....    ..+| ++++..++++.++.+||
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l----~~~v-~~~~~d~~~~~~~~~~D  118 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL----TDRI-VVIPGKVEEVSLPEQVD  118 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC----TTTE-EEEESCTTTCCCSSCEE
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCC----CCcE-EEEEcchhhCCCCCcee
Confidence            3468999999999999875544456999999996 89999988754211    1344 88888888876556676

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.08  E-value=5e-06  Score=68.83  Aligned_cols=68  Identities=25%  Similarity=0.273  Sum_probs=52.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      ..++||+|||+|.++..++.. ..+|..||+++.+++.|++++.....    ..++ ++.+..+.++. ++..||
T Consensus        92 ~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~-~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNL----GKNV-KFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTC----CTTE-EEECSCTTTSCCCTTCBS
T ss_pred             CCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC----CCcE-EEEEcChhhcccCCCccc
Confidence            468999999999999886655 78999999999999999998754211    1233 77777777766 555777

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.08  E-value=3.6e-06  Score=68.55  Aligned_cols=69  Identities=13%  Similarity=0.072  Sum_probs=48.0

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.++..++....  .+|..||+++.+++.|++++.....     ..+ ++.+..+.+..+ ...||
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----~~v-~~~~~d~~~~~~~~~~fD  148 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-----DNV-IVIVGDGTLGYEPLAPYD  148 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-----TTE-EEEESCGGGCCGGGCCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCe-EEEECCcccCCCCCCCee
Confidence            346899999999999987544432  7999999999999999988743111     223 666666543333 34565

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.08  E-value=1.3e-06  Score=75.49  Aligned_cols=46  Identities=22%  Similarity=0.403  Sum_probs=36.2

Q ss_pred             cceeeeccCCccccchHHHHhhc---cC--e--eEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY---FN--E--VDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~---f~--~--VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||+|||+|.+|..+|..+   +.  .  |++|||++.|++.|++.++.
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~  104 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK  104 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHh
Confidence            45799999999999887655432   22  2  39999999999999998744

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.07  E-value=5.3e-06  Score=68.45  Aligned_cols=60  Identities=8%  Similarity=-0.120  Sum_probs=46.9

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      +..++||+|||+|.+|..++...  ..+|..||+++.+++.++++....       .++ ++++..+.+.
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-------~~v-~~~~~d~~~~  134 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-------RNI-VPILGDATKP  134 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-------TTE-EEEECCTTCG
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-------CCC-EEEEccCCCc
Confidence            34689999999999998754443  269999999999999999987552       234 7778877763

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.07  E-value=3.5e-06  Score=71.41  Aligned_cols=61  Identities=18%  Similarity=0.046  Sum_probs=47.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||+|..+..|.. ...+|..||+++.|++.|++..           ++ ++.+..++++.. +..||
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-----------~~-~~~~~d~~~~~~~~~~fD   96 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVHP-----------QV-EWFTGYAENLALPDKSVD   96 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCCT-----------TE-EEECCCTTSCCSCTTCBS
T ss_pred             CCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhcc-----------CC-EEEECchhhCCCCCCCEe
Confidence            46899999999999988554 5679999999999999776642           22 778888887663 35777

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.07  E-value=4.7e-06  Score=72.49  Aligned_cols=68  Identities=12%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCC-C-CCCCCCcceEEEecCCCcc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-M-APDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~-~-~~~~~rv~n~~~vgLQdF~  225 (232)
                      +..+|||+|||+|.++..++.....+|..||+++.+++.|++.+..... . .....++ ++++..+.++.
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~  103 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSA-EFITADSSKEL  103 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEE-EEEECCTTTSC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceE-EEEEecccccc
Confidence            3468999999999999986655567999999999999999987632100 0 0001233 78888887764

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.06  E-value=3.9e-06  Score=67.36  Aligned_cols=56  Identities=21%  Similarity=0.173  Sum_probs=44.8

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++.. |++.+ +|..||+++.+++.      .        .++ ++.+..+.+..+...||
T Consensus        25 ~~vLD~GcG~G~~~~~-l~~~~-~v~gvD~s~~~~~~------~--------~~~-~~~~~d~~~~~~~~~fD   80 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQ-LRKRN-TVVSTDLNIRALES------H--------RGG-NLVRADLLCSINQESVD   80 (170)
T ss_dssp             CEEEEETCTTCHHHHH-HTTTS-EEEEEESCHHHHHT------C--------SSS-CEEECSTTTTBCGGGCS
T ss_pred             CeEEEeccCccHHHHH-HHhcC-cEEEEECCHHHHhc------c--------cCC-eEEECChhhhcccCCCC
Confidence            4899999999999987 56666 99999999999987      1        233 77888887765556776

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.06  E-value=1.4e-06  Score=78.32  Aligned_cols=102  Identities=21%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|+|...++..|-..-...|..+.....     ....+|||+|||.|.++..++... ..+|++||.++.+++.|++++.
T Consensus        79 ~ldg~~q~~~~de~~Y~e~l~~l~l~~~-----~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~  153 (314)
T 2b2c_A           79 VLDGIVQATERDEFSYQEMLAHLPMFAH-----PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLP  153 (314)
T ss_dssp             EETTEEEEESSSSSHHHHHHHHHHHHHS-----SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCT
T ss_pred             EECCEeecCCcchhHHHHHHHHHHHhhC-----CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH
Confidence            4566656666664333445554422111     123689999999999999865442 4799999999999999999985


Q ss_pred             CCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          202 PENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      .... +-+..++ ++++....+|-  +..+||
T Consensus       154 ~~~~-~~~~~rv-~~~~~D~~~~l~~~~~~fD  183 (314)
T 2b2c_A          154 GMSC-GFSHPKL-DLFCGDGFEFLKNHKNEFD  183 (314)
T ss_dssp             TTSG-GGGCTTE-EEECSCHHHHHHHCTTCEE
T ss_pred             Hhcc-ccCCCCE-EEEEChHHHHHHhcCCCce
Confidence            4200 0012444 67766665543  234565

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.06  E-value=1.4e-06  Score=73.08  Aligned_cols=62  Identities=8%  Similarity=-0.051  Sum_probs=46.2

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..+|||+|||+|..|..|+...  ..+|+.||+++.+++.|++++.....    ..++ ++++..+.++
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~v-~~~~~d~~~~  124 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL----ENKI-FLKLGSALET  124 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGE-EEEESCHHHH
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCE-EEEECCHHHH
Confidence            3589999999999998755443  46999999999999999998754211    1233 6676665543

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.04  E-value=5.7e-06  Score=73.17  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      ++||+|||+|.+|..| ++...+|.+||.++.|++.+++++..        .++ ++++..+.++..+
T Consensus        49 ~VLEIG~G~G~lt~~L-~~~~~~V~avEid~~~~~~l~~~~~~--------~~v-~vi~~D~l~~~~~  106 (271)
T 3fut_A           49 PVFEVGPGLGALTRAL-LEAGAEVTAIEKDLRLRPVLEETLSG--------LPV-RLVFQDALLYPWE  106 (271)
T ss_dssp             CEEEECCTTSHHHHHH-HHTTCCEEEEESCGGGHHHHHHHTTT--------SSE-EEEESCGGGSCGG
T ss_pred             eEEEEeCchHHHHHHH-HHcCCEEEEEECCHHHHHHHHHhcCC--------CCE-EEEECChhhCChh
Confidence            8999999999999875 55568999999999999999998743        344 7888888877654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.04  E-value=1.8e-06  Score=75.48  Aligned_cols=43  Identities=19%  Similarity=0.242  Sum_probs=38.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l  200 (232)
                      ..+|||+|||.|.++..++..-..+|++||.++.+++.|++++
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence            3689999999999999866553569999999999999999998

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.04  E-value=4.6e-06  Score=72.38  Aligned_cols=66  Identities=17%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             ceeeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||+|||+|.+|.. |++.+.  +|..||.++.+++.|++++.....     ..+ .+++..+.++ |. ..||
T Consensus       120 ~~~VLDlgcG~G~~s~~-la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-----~~~-~~~~~d~~~~-~~~~~~D  188 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIP-LAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-----NNV-IPILADNRDV-ELKDVAD  188 (272)
T ss_dssp             TCEEEETTCTTTTTHHH-HHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-----SSE-EEEESCGGGC-CCTTCEE
T ss_pred             CCEEEEecCcCCHHHHH-HHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCE-EEEECChHHc-CccCCce
Confidence            46899999999999987 455544  999999999999999998855211     233 5888888888 53 3565

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.03  E-value=5.3e-06  Score=71.94  Aligned_cols=61  Identities=13%  Similarity=0.186  Sum_probs=47.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII  228 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~  228 (232)
                      ..++||+|||+|.+|..|+.....+|.+||.++.|++.++++ ..        .++ ++++..+.++.++.
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~~--------~~v-~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-GD--------ERL-EVINEDASKFPFCS   92 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-CC--------TTE-EEECSCTTTCCGGG
T ss_pred             cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-cC--------CCe-EEEEcchhhCChhH
Confidence            468999999999999875444258999999999999999886 22        344 77888887776543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.03  E-value=5.5e-06  Score=74.22  Aligned_cols=66  Identities=15%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      +..+|||+|||+|.+|..| ++...+|.+||.++.|++.|++++...       .++ ++++..+.++.++. .||
T Consensus        50 ~~~~VLEIG~G~G~lT~~L-a~~~~~V~aVEid~~li~~a~~~~~~~-------~~v-~vi~gD~l~~~~~~~~fD  116 (295)
T 3gru_A           50 KDDVVLEIGLGKGILTEEL-AKNAKKVYVIEIDKSLEPYANKLKELY-------NNI-EIIWGDALKVDLNKLDFN  116 (295)
T ss_dssp             TTCEEEEECCTTSHHHHHH-HHHSSEEEEEESCGGGHHHHHHHHHHC-------SSE-EEEESCTTTSCGGGSCCS
T ss_pred             CcCEEEEECCCchHHHHHH-HhcCCEEEEEECCHHHHHHHHHHhccC-------CCe-EEEECchhhCCcccCCcc
Confidence            3468999999999999875 555789999999999999999987531       344 78888888766443 465

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.03  E-value=5.6e-06  Score=68.12  Aligned_cols=67  Identities=18%  Similarity=0.175  Sum_probs=49.7

Q ss_pred             ceeeeccCCc-cccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          158 HLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAG-IGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      ..++||+||| +|.++..+......+|..||.++.+++.|++++....      -++ ++++..+..+.+  +..||
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~------~~v-~~~~~d~~~~~~~~~~~fD  125 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNN------SNV-RLVKSNGGIIKGVVEGTFD  125 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTT------CCC-EEEECSSCSSTTTCCSCEE
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhC------CCc-EEEeCCchhhhhcccCcee
Confidence            4689999999 9999987544436899999999999999999875521      133 778877544432  24665

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.03  E-value=4.4e-06  Score=74.99  Aligned_cols=68  Identities=13%  Similarity=0.061  Sum_probs=51.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..+|||+|||+|.++..+......+|.+||+++ +++.|++++.....    ..+| ++++..++++..+ .+||
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~----~~~i-~~~~~d~~~~~~~~~~~D  133 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKL----EDTI-TLIKGKIEEVHLPVEKVD  133 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTC----TTTE-EEEESCTTTSCCSCSCEE
T ss_pred             CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCC----CCcE-EEEEeeHHHhcCCCCcEE
Confidence            468999999999999864444346999999997 99999998754321    1344 8888888887644 5676

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.02  E-value=3.4e-06  Score=70.03  Aligned_cols=63  Identities=10%  Similarity=0.052  Sum_probs=47.1

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..+|||+|||+|..|..|+... ..+|..||+++.+++.|++++.....    ..+| ++.+..+.++.
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~  118 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL----ESRI-ELLFGDALQLG  118 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC----TTTE-EEECSCGGGSH
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECCHHHHH
Confidence            3589999999999998754443 47999999999999999998754211    1234 67777766653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.02  E-value=5.1e-06  Score=70.75  Aligned_cols=42  Identities=19%  Similarity=0.106  Sum_probs=36.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l  200 (232)
                      ..+|||+|||+|+++..|+.. ..+|..||+++.+++.|++++
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~   99 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKER   99 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhh
Confidence            368999999999999886555 559999999999999998865

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.01  E-value=1e-05  Score=68.03  Aligned_cols=79  Identities=14%  Similarity=0.061  Sum_probs=53.3

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      ...++..+..... . ...+..++||+|||+|.++..++... ..+|..||.++.+++.|++++.....    .+++ ++
T Consensus        48 ~~~~~~~~~~~~~-~-~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~v-~~  120 (254)
T 2h00_A           48 YIHWVEDLIGHQD-S-DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL----SDLI-KV  120 (254)
T ss_dssp             HHHHHHHHHCCCC-G-GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EE
T ss_pred             HHHHHHHHHhhcc-c-cCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC----CccE-EE
Confidence            4456666554211 0 00134589999999999998765543 36999999999999999998754211    1334 77


Q ss_pred             EEecCCC
Q 026812          217 FCVPLQV  223 (232)
Q Consensus       217 ~~vgLQd  223 (232)
                      ++..+.+
T Consensus       121 ~~~d~~~  127 (254)
T 2h00_A          121 VKVPQKT  127 (254)
T ss_dssp             EECCTTC
T ss_pred             EEcchhh
Confidence            8777554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.01  E-value=9.4e-06  Score=72.42  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             ccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCC
Q 026812          132 EVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDM  210 (232)
Q Consensus       132 ~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~  210 (232)
                      ..| .+++.++..+...        ...++||+|||.|.++..++.... .+|+.||+++.+++.|++++....      
T Consensus       180 ~~d-~~~~~ll~~l~~~--------~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~------  244 (343)
T 2pjd_A          180 GLD-VGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANG------  244 (343)
T ss_dssp             SCC-HHHHHHHHHSCTT--------CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTT------
T ss_pred             CCc-HHHHHHHHhcCcC--------CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC------
Confidence            344 3566777665331        134799999999999988554432 499999999999999999875421      


Q ss_pred             CCcceEEEecCCCccCCCCCC
Q 026812          211 HKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       211 ~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      -. .++++..+.++. +..||
T Consensus       245 ~~-~~~~~~d~~~~~-~~~fD  263 (343)
T 2pjd_A          245 VE-GEVFASNVFSEV-KGRFD  263 (343)
T ss_dssp             CC-CEEEECSTTTTC-CSCEE
T ss_pred             CC-CEEEEccccccc-cCCee
Confidence            11 256676666553 34565

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.01  E-value=4.3e-06  Score=68.45  Aligned_cols=69  Identities=13%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      +..++||+|||+|+++..|.... ..+|..||+++.|++.+.++...... .....++ ++.+..++++...
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~-~~~~~~v-~~~~~d~~~l~~~   96 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA-KGGLPNL-LYLWATAERLPPL   96 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG-GTCCTTE-EEEECCSTTCCSC
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh-hcCCCce-EEEecchhhCCCC
Confidence            34689999999999998754432 47999999999988864332211000 0001233 7888888886543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.01  E-value=4.8e-06  Score=74.86  Aligned_cols=68  Identities=19%  Similarity=0.071  Sum_probs=52.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..+|||+|||+|.++..++.....+|..||+++ +++.|++++.....    .++| ++++..++++..+ .+||
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~fD  135 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKL----DHVV-TIIKGKVEEVELPVEKVD  135 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTC----TTTE-EEEESCTTTCCCSSSCEE
T ss_pred             CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCC----CCcE-EEEECcHHHccCCCCceE
Confidence            358999999999999875544466999999995 99999998755322    1334 8999999988543 5776

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.00  E-value=6.3e-06  Score=66.59  Aligned_cols=53  Identities=17%  Similarity=0.197  Sum_probs=43.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||.|+++..++.. ..+|..||+++.+++.+++++             .++++..++++
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~-------------~~~~~~d~~~~   85 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL-------------DHVVLGDIETM   85 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS-------------SEEEESCTTTC
T ss_pred             CCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC-------------CcEEEcchhhc
Confidence            468999999999999886555 679999999999999998754             15666666654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.00  E-value=2.5e-06  Score=71.00  Aligned_cols=41  Identities=15%  Similarity=0.016  Sum_probs=35.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~  199 (232)
                      ..+|||+|||.|.++..+ ++...+|..||+++.+++.|+++
T Consensus        42 ~~~vLDiGcG~G~~~~~l-~~~~~~v~gvD~s~~~~~~a~~~   82 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELC-KEEGIESIGVDINEDMIKFCEGK   82 (240)
T ss_dssp             CSCEEEETCTTTHHHHHH-HHHTCCEEEECSCHHHHHHHHTT
T ss_pred             CCeEEEEeCCCCHHHHHH-HhCCCcEEEEECCHHHHHHHHhh
Confidence            468999999999999875 45456899999999999999875

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.00  E-value=7.6e-06  Score=72.87  Aligned_cols=69  Identities=10%  Similarity=0.031  Sum_probs=56.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|-.|..++.....+|.+||.++..++.|++|+.....    .++| ++++....+|.++..||
T Consensus       126 g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v----~~~v-~~~~~D~~~~~~~~~~D  194 (278)
T 3k6r_A          126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----EDRM-SAYNMDNRDFPGENIAD  194 (278)
T ss_dssp             TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC----TTTE-EEECSCTTTCCCCSCEE
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEeCcHHHhccccCCC
Confidence            368999999999999987665557999999999999999999865322    2444 78888888888877776

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.00  E-value=3e-06  Score=76.01  Aligned_cols=101  Identities=15%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             ccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          124 LGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       124 LGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      |.|...+++.|-..-...|..+.....     ....+|||+|||.|.++..++... ..+|++||.++.+++.|++++..
T Consensus        88 ldg~~~~~~~de~~y~e~l~~~~l~~~-----~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~  162 (321)
T 2pt6_A           88 LDGVIQLTEKDEFAYHEMMTHVPMTVS-----KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  162 (321)
T ss_dssp             ETTEEEEETTTHHHHHHHHHHHHHHHS-----SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             ECCEeeeCcccchHHHHHHHHHHHhcC-----CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            344445666663333344544321101     123689999999999999865442 47999999999999999999854


Q ss_pred             CCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          203 ENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       203 ~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      .. .+-+..++ ++++....+|.  ++.+||
T Consensus       163 ~~-~~~~~~~v-~~~~~D~~~~l~~~~~~fD  191 (321)
T 2pt6_A          163 IS-CGYEDKRV-NVFIEDASKFLENVTNTYD  191 (321)
T ss_dssp             TS-GGGGSTTE-EEEESCHHHHHHHCCSCEE
T ss_pred             hc-cccCCCcE-EEEEccHHHHHhhcCCCce
Confidence            10 00112344 77777765553  234565

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.99  E-value=5.1e-06  Score=71.31  Aligned_cols=68  Identities=15%  Similarity=0.080  Sum_probs=50.2

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++... ..+|.+||+++.+++.|++++.....     .++ ++++..+.+..+..+||
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-----~~v-~~~~~d~~~~~~~~~fD  178 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNI-HILQSDWFSALAGQQFA  178 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-----CSE-EEECCSTTGGGTTCCEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----Cce-EEEEcchhhhcccCCcc
Confidence            3589999999999998865443 46999999999999999998744210     133 67777776655445665

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.99  E-value=6.6e-06  Score=74.47  Aligned_cols=68  Identities=18%  Similarity=0.132  Sum_probs=53.8

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..+|||+|||+|.+|.-+|++. -.+|+.||.++.+++.|+++++...     -.+| +|.+....++. ...||
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g-----l~~v-~~v~gDa~~l~-d~~FD  190 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG-----VDGV-NVITGDETVID-GLEFD  190 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT-----CCSE-EEEESCGGGGG-GCCCS
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC-----CCCe-EEEECchhhCC-CCCcC
Confidence            45799999999999997777764 4699999999999999999875421     1355 78888888874 56787

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.99  E-value=5.4e-06  Score=69.81  Aligned_cols=46  Identities=22%  Similarity=0.165  Sum_probs=38.0

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHH------HHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSH------FLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~------Fle~Are~l~~  202 (232)
                      +..++||+|||.|.++..++...-  .+|+.||+++.      +++.|++++..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~   96 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLA   96 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHh
Confidence            346899999999999987554431  69999999998      89999998754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.98  E-value=2.2e-06  Score=70.11  Aligned_cols=61  Identities=15%  Similarity=0.151  Sum_probs=45.4

Q ss_pred             eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .++||+|||+|..|..|+...  ..+|+.||+++.+++.|++++.....    ..++ ++++....++
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~  120 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL----IDRV-ELQVGDPLGI  120 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG----GGGE-EEEESCHHHH
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CceE-EEEEecHHHH
Confidence            589999999999998855432  35999999999999999988754211    1233 6777666554

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.97  E-value=2.7e-06  Score=75.68  Aligned_cols=73  Identities=14%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..+|||+|||.|.++..++... ..+|++||.++.+++.|++++...+...-+..++ ++++....+|.  +..+||
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v-~~~~~D~~~~l~~~~~~fD  153 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRA-VLVIDDARAYLERTEERYD  153 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE-EEEESCHHHHHHHCCCCEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCce-EEEEchHHHHHHhcCCCcc
Confidence            3689999999999999865542 5799999999999999999874210000012344 77777776653  234665

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.97  E-value=2.4e-06  Score=70.32  Aligned_cols=62  Identities=19%  Similarity=0.066  Sum_probs=46.0

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|..|..|+...  ..+|..||+++.+++.|++++.....    ..++ ++++..+.++
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~----~~~i-~~~~~d~~~~  133 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA----EHKI-DLRLKPALET  133 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC----TTTE-EEEESCHHHH
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC----CCeE-EEEEcCHHHH
Confidence            3589999999999998855433  46999999999999999998754211    1344 6666655443

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.97  E-value=5.7e-06  Score=71.77  Aligned_cols=69  Identities=16%  Similarity=0.043  Sum_probs=50.8

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC-CCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL-QdF~Pe~~YD  231 (232)
                      ..++||+|||+|-++..+.... ..+|.+||.++..++.|++|+.....    .++| ++.+..+ +.+.+..+||
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~i-~~~~~d~l~~l~~~~~~D   86 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL----KEKI-QVRLANGLAAFEETDQVS   86 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTE-EEEECSGGGGCCGGGCCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CceE-EEEECchhhhcccCcCCC
Confidence            4689999999999998744332 35899999999999999999866321    2345 5666655 5665544677

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.97  E-value=2.3e-05  Score=72.55  Aligned_cols=62  Identities=18%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|.+|.. |++...+|..||.++.+++.|++++.....     .++ +|++..+.++.+
T Consensus       287 ~~~VLDlgcG~G~~~~~-la~~~~~V~gvD~s~~al~~A~~n~~~~~~-----~~v-~f~~~d~~~~l~  348 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLP-LATQAASVVGVEGVPALVEKGQQNARLNGL-----QNV-TFYHENLEEDVT  348 (433)
T ss_dssp             TCEEEEESCTTTTTHHH-HHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEECCTTSCCS
T ss_pred             CCEEEECCCCCCHHHHH-HHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-----Cce-EEEECCHHHHhh
Confidence            45899999999999987 556688999999999999999998754211     233 788888887543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.96  E-value=8.9e-06  Score=70.76  Aligned_cols=45  Identities=20%  Similarity=0.316  Sum_probs=37.0

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+|||+|||+|.+|..|.... ..+|..||+++.+++.|++++..
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence            4689999999999998754442 46999999999999999988643

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.95  E-value=7.1e-06  Score=73.04  Aligned_cols=68  Identities=15%  Similarity=0.125  Sum_probs=50.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..+|||+|||+|.++..++...+.+|.+||++ .+++.|++++.....    .++| ++++..++++..+ .+||
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~----~~~i-~~~~~d~~~~~~~~~~~D  107 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGF----SDKI-TLLRGKLEDVHLPFPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTC----TTTE-EEEESCTTTSCCSSSCEE
T ss_pred             CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCC----CCCE-EEEECchhhccCCCCccc
Confidence            35899999999999986444335699999999 599999998754221    1344 7888888887644 5666

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.94  E-value=1e-05  Score=74.41  Aligned_cols=86  Identities=19%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      .+++.++..+......  ...+..+|||+|||+|.++..++. ...+|++||.++.+++.|++++....      -. .+
T Consensus       214 ~~t~~ll~~l~~~l~~--~~~~~~~VLDlGcG~G~~~~~la~-~g~~V~gvDis~~al~~A~~n~~~~~------~~-v~  283 (381)
T 3dmg_A          214 PASLLLLEALQERLGP--EGVRGRQVLDLGAGYGALTLPLAR-MGAEVVGVEDDLASVLSLQKGLEANA------LK-AQ  283 (381)
T ss_dssp             HHHHHHHHHHHHHHCT--TTTTTCEEEEETCTTSTTHHHHHH-TTCEEEEEESBHHHHHHHHHHHHHTT------CC-CE
T ss_pred             HHHHHHHHHHHHhhcc--cCCCCCEEEEEeeeCCHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHcC------CC-eE
Confidence            3566677666431100  012346899999999999988554 46799999999999999999985521      12 38


Q ss_pred             EEEecCCCccCC-CCCC
Q 026812          216 FFCVPLQVITNI-IQYH  231 (232)
Q Consensus       216 ~~~vgLQdF~Pe-~~YD  231 (232)
                      +++..+.++.++ ..||
T Consensus       284 ~~~~D~~~~~~~~~~fD  300 (381)
T 3dmg_A          284 ALHSDVDEALTEEARFD  300 (381)
T ss_dssp             EEECSTTTTSCTTCCEE
T ss_pred             EEEcchhhccccCCCeE
Confidence            899998887665 5776

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.93  E-value=2.5e-06  Score=73.06  Aligned_cols=66  Identities=14%  Similarity=0.084  Sum_probs=49.6

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++.. +++...+|..||+++.+++.|++++.....     .  .++++..+.+..|..+||
T Consensus       121 ~~~VLDiGcG~G~l~~~-la~~g~~v~gvDi~~~~v~~a~~n~~~~~~-----~--v~~~~~d~~~~~~~~~fD  186 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIA-AEKLGGKALGVDIDPMVLPQAEANAKRNGV-----R--PRFLEGSLEAALPFGPFD  186 (254)
T ss_dssp             TCEEEEETCTTSHHHHH-HHHTTCEEEEEESCGGGHHHHHHHHHHTTC-----C--CEEEESCHHHHGGGCCEE
T ss_pred             CCEEEEecCCCcHHHHH-HHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----c--EEEEECChhhcCcCCCCC
Confidence            36899999999999987 455555999999999999999998754211     1  377777766644445665

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.93  E-value=3.9e-06  Score=74.08  Aligned_cols=72  Identities=18%  Similarity=0.125  Sum_probs=50.3

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      ..+|||+|||.|.++..++... ..+|++||.++.+++.|++++..... +-+..++ ++++....+|.+  ..+||
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~-~~~~~~v-~~~~~D~~~~l~~~~~~fD  165 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC-GFDDPRA-EIVIANGAEYVRKFKNEFD  165 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG-GGGCTTE-EEEESCHHHHGGGCSSCEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccCCCce-EEEECcHHHHHhhCCCCce
Confidence            3689999999999999866542 47999999999999999998732000 0011344 777776655532  34566

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.93  E-value=1.3e-05  Score=66.83  Aligned_cols=44  Identities=18%  Similarity=0.333  Sum_probs=38.2

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.++.. |++.+ .+|..||+++.+++.|++++..
T Consensus        92 ~~~vLdiG~G~G~~~~~-la~~~~~~v~~vD~~~~~~~~a~~~~~~  136 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAAL-ISEIVKTDVYTIERIPELVEFAKRNLER  136 (235)
T ss_dssp             TCCEEEECCTTSHHHHH-HHHHHCSCEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcCHHHHH-HHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence            45899999999999987 55555 7999999999999999998754

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.92  E-value=7.6e-06  Score=63.48  Aligned_cols=59  Identities=19%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|.++..++. ...+|..||+++.+++.|++++....      -++ ++++..+.++
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~-~~~~~d~~~~  100 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAAS-EGWEAVLVEKDPEAVRLLKENVRRTG------LGA-RVVALPVEVF  100 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHH-TTCEEEEECCCHHHHHHHHHHHHHHT------CCC-EEECSCHHHH
T ss_pred             CCeEEEeCCCcCHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHHHHcC------Cce-EEEeccHHHH
Confidence            35899999999999988554 45569999999999999999875421      122 6677666654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.92  E-value=7.7e-06  Score=71.95  Aligned_cols=69  Identities=13%  Similarity=-0.040  Sum_probs=49.7

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEec-CCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vg-LQdF~Pe~~YD  231 (232)
                      ..++||+|||.|-++..+.... ..+|.+||.++..++.|++|+.....    .++| ++.+.. ++.+.|...||
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl----~~~I-~v~~gD~l~~~~~~~~~D   92 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL----TEQI-DVRKGNGLAVIEKKDAID   92 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC----TTTE-EEEECSGGGGCCGGGCCC
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CceE-EEEecchhhccCcccccc
Confidence            4689999999999998744332 35899999999999999999865321    2345 566654 44444434577

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.92  E-value=1.5e-05  Score=74.45  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=52.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.+|.. |++.+.+|..||.++.+++.|++++....      -. .+|++..+.++.+. .||
T Consensus       291 ~~~VLDlgcG~G~~sl~-la~~~~~V~gvD~s~~ai~~A~~n~~~ng------l~-v~~~~~d~~~~~~~-~fD  355 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIY-LAKRGFNVKGFDSNEFAIEMARRNVEINN------VD-AEFEVASDREVSVK-GFD  355 (425)
T ss_dssp             SSEEEEETCTTTHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHHHT------CC-EEEEECCTTTCCCT-TCS
T ss_pred             CCEEEEeeccchHHHHH-HHHcCCEEEEEECCHHHHHHHHHHHHHcC------Cc-EEEEECChHHcCcc-CCC
Confidence            35899999999999987 56678899999999999999999875411      12 48899999888654 676

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.92  E-value=1.3e-05  Score=66.63  Aligned_cols=59  Identities=8%  Similarity=0.184  Sum_probs=44.4

Q ss_pred             eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .++||+|||.|.++..| ++.  ..+|..||+++.+++.|++++.....     ..| .+++..+.++
T Consensus        40 ~~vLDiGcG~G~~~~~l-a~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-----~nv-~~~~~d~~~l  100 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGM-AKQNPDINYIGIELFKSVIVTAVQKVKDSEA-----QNV-KLLNIDADTL  100 (213)
T ss_dssp             CEEEEECCTTSHHHHHH-HHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-----SSE-EEECCCGGGH
T ss_pred             ceEEEEecCCCHHHHHH-HHHCCCCCEEEEEechHHHHHHHHHHHHcCC-----CCE-EEEeCCHHHH
Confidence            57999999999999875 444  35899999999999999988754211     123 6666666654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.91  E-value=5e-06  Score=70.40  Aligned_cols=76  Identities=9%  Similarity=0.024  Sum_probs=53.5

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~  214 (232)
                      ....||..+...       .+..+|||+|||+|..|..|+..+  ..+|+.||+++.+++.|++++.....    .++| 
T Consensus        57 ~~~~~l~~l~~~-------~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i-  124 (237)
T 3c3y_A           57 LAGQLMSFVLKL-------VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV----EHKI-  124 (237)
T ss_dssp             HHHHHHHHHHHH-------TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC----GGGE-
T ss_pred             HHHHHHHHHHHh-------hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-
Confidence            345667765441       123589999999999999866543  46999999999999999999855221    1344 


Q ss_pred             eEEEecCCCc
Q 026812          215 NFFCVPLQVI  224 (232)
Q Consensus       215 n~~~vgLQdF  224 (232)
                      ++++....++
T Consensus       125 ~~~~gda~~~  134 (237)
T 3c3y_A          125 NFIESDAMLA  134 (237)
T ss_dssp             EEEESCHHHH
T ss_pred             EEEEcCHHHH
Confidence            6666655544

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.91  E-value=1.4e-05  Score=68.47  Aligned_cols=69  Identities=14%  Similarity=0.059  Sum_probs=51.5

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++..+  ..+|..||.++.+++.|++++.....    ..++ ++++..+.++.|+..||
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~D  183 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL----IERV-TIKVRDISEGFDEKDVD  183 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC----GGGE-EEECCCGGGCCSCCSEE
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----CCCE-EEEECCHHHcccCCccC
Confidence            4689999999999998865553  46999999999999999998754210    0233 67777777765555665

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.91  E-value=8.3e-06  Score=71.09  Aligned_cols=69  Identities=16%  Similarity=0.009  Sum_probs=50.0

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEec-CCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vg-LQdF~Pe~~YD  231 (232)
                      ..++||+|||+|-++..+.... ..+|.+||.++..++.|++|+.....    .++| ++.+.. ++.+.|..+||
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl----~~~I-~~~~gD~l~~~~~~~~~D   92 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL----TSKI-DVRLANGLSAFEEADNID   92 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC----TTTE-EEEECSGGGGCCGGGCCC
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECchhhccccccccC
Confidence            4789999999999998744432 46899999999999999999866322    2455 555554 44444434677

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.90  E-value=4.6e-06  Score=72.07  Aligned_cols=65  Identities=11%  Similarity=0.001  Sum_probs=49.7

Q ss_pred             ceeeeccCCccccchHHHH--hhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc-eEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLL--IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-NFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lL--l~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~-n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|-++..+.  .+.. +|.++|.++.|++.++++++.        .++. ++....+.+-.|...||
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~--------~g~~~~v~~~d~~~~~~~~~~D  117 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGK--------LKTTIKYRFLNKESDVYKGTYD  117 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHH--------SCCSSEEEEECCHHHHTTSEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHh--------cCCCccEEEecccccCCCCCcC
Confidence            4689999999999998642  3345 999999999999999999855        2233 55556666666666777

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.90  E-value=8.6e-06  Score=73.40  Aligned_cols=87  Identities=11%  Similarity=0.030  Sum_probs=59.8

Q ss_pred             cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCC-
Q 026812          133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-  211 (232)
Q Consensus       133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~-  211 (232)
                      .|....+.+|..+... .     .+..++||+|||+|.+|..++...+ +|..||.++.+++.|++++.....    .. 
T Consensus       135 ~dq~~~~~~l~~~~~~-~-----~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl----~~~  203 (332)
T 2igt_A          135 PEQIVHWEWLKNAVET-A-----DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGL----EQA  203 (332)
T ss_dssp             GGGHHHHHHHHHHHHH-S-----SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTC----TTS
T ss_pred             hHHHHHHHHHHHHHHh-c-----CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC----Ccc
Confidence            3555556566655421 0     1235899999999999998665544 999999999999999998754211    12 


Q ss_pred             CcceEEEecCCCccC-----CCCCC
Q 026812          212 KATNFFCVPLQVITN-----IIQYH  231 (232)
Q Consensus       212 rv~n~~~vgLQdF~P-----e~~YD  231 (232)
                      ++ ++++..+.+|.+     ..+||
T Consensus       204 ~v-~~i~~D~~~~l~~~~~~~~~fD  227 (332)
T 2igt_A          204 PI-RWICEDAMKFIQREERRGSTYD  227 (332)
T ss_dssp             CE-EEECSCHHHHHHHHHHHTCCBS
T ss_pred             ce-EEEECcHHHHHHHHHhcCCCce
Confidence            24 778877777654     34676

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.90  E-value=1.9e-05  Score=66.63  Aligned_cols=63  Identities=16%  Similarity=0.077  Sum_probs=47.3

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..++||+|||.|.++..++... ..+|..||+++.+++.|+++..          ++ .+.+..++++.. +..||
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----------~~-~~~~~d~~~~~~~~~~fD  150 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----------QV-TFCVASSHRLPFSDTSMD  150 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----------TS-EEEECCTTSCSBCTTCEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC----------Cc-EEEEcchhhCCCCCCcee
Confidence            3589999999999998755443 4699999999999999998752          22 667777766542 23555

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.90  E-value=5.4e-06  Score=71.02  Aligned_cols=76  Identities=14%  Similarity=0.085  Sum_probs=53.5

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~  214 (232)
                      ....||..+...       .+..++||+|||+|..|..|+..+  ..+|+.||.++.+++.|++++.....    ..+| 
T Consensus        66 ~~~~ll~~l~~~-------~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~----~~~i-  133 (247)
T 1sui_A           66 DEGQFLSMLLKL-------INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKI-  133 (247)
T ss_dssp             HHHHHHHHHHHH-------TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGE-
T ss_pred             HHHHHHHHHHHh-------hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCCe-
Confidence            345667665441       123589999999999998865543  36999999999999999998855211    1344 


Q ss_pred             eEEEecCCCc
Q 026812          215 NFFCVPLQVI  224 (232)
Q Consensus       215 n~~~vgLQdF  224 (232)
                      ++++....++
T Consensus       134 ~~~~gda~~~  143 (247)
T 1sui_A          134 DFREGPALPV  143 (247)
T ss_dssp             EEEESCHHHH
T ss_pred             EEEECCHHHH
Confidence            6777666554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.89  E-value=1e-05  Score=67.61  Aligned_cols=42  Identities=14%  Similarity=0.071  Sum_probs=33.9

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~  199 (232)
                      +..+|||+|||+|.+|.. |++.+  .+|..||+++.+++.+.+.
T Consensus        57 ~g~~VLDlGcGtG~~~~~-la~~~~~~~V~gvD~s~~~l~~~~~~  100 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSH-LADIVDEGIIYAVEYSAKPFEKLLEL  100 (210)
T ss_dssp             SSCEEEEETCTTSHHHHH-HHHHTTTSEEEEECCCHHHHHHHHHH
T ss_pred             CCCEEEEECCcCCHHHHH-HHHHcCCCEEEEEECCHHHHHHHHHH
Confidence            346899999999999976 55554  6999999999987766554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.88  E-value=5.7e-06  Score=68.07  Aligned_cols=65  Identities=20%  Similarity=0.205  Sum_probs=45.9

Q ss_pred             ceeeeccCCccccchHHHHhhccC-------eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFN-------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~-------~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|..|.. |++.+.       +|..||+++.+++.|++++...........++ ++.+..+.+.
T Consensus        81 ~~~VLdiG~G~G~~~~~-la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~  152 (227)
T 2pbf_A           81 GSRAIDVGSGSGYLTVC-MAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF-KIIHKNIYQV  152 (227)
T ss_dssp             TCEEEEESCTTSHHHHH-HHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE-EEEECCGGGC
T ss_pred             CCEEEEECCCCCHHHHH-HHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE-EEEECChHhc
Confidence            46899999999999986 555554       99999999999999999875421000001233 6777766653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.88  E-value=1.1e-05  Score=71.00  Aligned_cols=68  Identities=18%  Similarity=0.199  Sum_probs=49.8

Q ss_pred             cceeeeccCCccccchHHHHhhccCe---eEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNE---VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~---VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.++..+ ++.+..   |..||+++.+++.|++++.....     ..+ ++.+..+.+..| ...||
T Consensus        75 ~~~~VLDiGcG~G~~~~~l-a~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-----~~v-~~~~~d~~~~~~~~~~fD  146 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVM-SRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENV-IFVCGDGYYGVPEFSPYD  146 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHH-HHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEESCGGGCCGGGCCEE
T ss_pred             CcCEEEEecCCchHHHHHH-HHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCe-EEEECChhhccccCCCeE
Confidence            3468999999999999874 555544   99999999999999998754211     223 777777776443 34666

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.87  E-value=1.5e-05  Score=69.43  Aligned_cols=57  Identities=9%  Similarity=0.092  Sum_probs=44.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCe--eEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNE--VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~--VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..++||+|||+|.+|.  |.+ ..+  |.+||.++.|++.|++++...       .++ ++++..+.++.
T Consensus        22 ~~~VLEIG~G~G~lt~--l~~-~~~~~v~avEid~~~~~~a~~~~~~~-------~~v-~~i~~D~~~~~   80 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE--PVG-ERLDQLTVIELDRDLAARLQTHPFLG-------PKL-TIYQQDAMTFN   80 (252)
T ss_dssp             TCCEEEECCTTTTTHH--HHH-TTCSCEEEECCCHHHHHHHHTCTTTG-------GGE-EEECSCGGGCC
T ss_pred             cCEEEEECCCCcHHHH--hhh-CCCCeEEEEECCHHHHHHHHHHhccC-------Cce-EEEECchhhCC
Confidence            4589999999999998  555 567  999999999999999977431       233 66776666654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.87  E-value=9.4e-06  Score=67.50  Aligned_cols=60  Identities=8%  Similarity=-0.188  Sum_probs=43.2

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      +..++||+|||+|.+|..|+...  ..+|..||+++.+++.+.++....       .++ ++++..+.++
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-------~~v-~~~~~d~~~~  138 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-------TNI-IPVIEDARHP  138 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-------TTE-EEECSCTTCG
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-------CCe-EEEEcccCCh
Confidence            34689999999999998755443  269999999988777776654331       223 6677777664

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.85  E-value=1e-05  Score=74.87  Aligned_cols=66  Identities=18%  Similarity=0.218  Sum_probs=52.5

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .+|||+|||+|-+|. +.++. ..+|.+||.++ +++.|++.+.....    .++| ++++..++++..++++|
T Consensus        85 k~VLDvG~GtGiLs~-~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~----~~~i-~~i~~~~~~~~lpe~~D  151 (376)
T 4hc4_A           85 KTVLDVGAGTGILSI-FCAQAGARRVYAVEASA-IWQQAREVVRFNGL----EDRV-HVLPGPVETVELPEQVD  151 (376)
T ss_dssp             CEEEEETCTTSHHHH-HHHHTTCSEEEEEECST-THHHHHHHHHHTTC----TTTE-EEEESCTTTCCCSSCEE
T ss_pred             CEEEEeCCCccHHHH-HHHHhCCCEEEEEeChH-HHHHHHHHHHHcCC----CceE-EEEeeeeeeecCCcccc
Confidence            579999999999985 45555 47999999996 89999988755322    2455 88999999998777776

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.84  E-value=1.7e-05  Score=66.95  Aligned_cols=68  Identities=10%  Similarity=0.117  Sum_probs=46.3

Q ss_pred             cceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCC---CCCCcceEEEecCCCcc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAP---DMHKATNFFCVPLQVIT  225 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~---~~~rv~n~~~vgLQdF~  225 (232)
                      ...++||+|||+|.++..+..... ..|..||+++.+++.|++++........   .-..+ ++++..+.++-
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv-~~~~~D~~~~l  120 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNI-NVLRGNAMKFL  120 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTE-EEEECCTTSCG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcE-EEEeccHHHHH
Confidence            346899999999999988544432 3899999999999999887643100000   00233 67787777643

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.83  E-value=1.8e-05  Score=69.48  Aligned_cols=66  Identities=14%  Similarity=-0.004  Sum_probs=50.1

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQY  230 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~Y  230 (232)
                      .++||+|||+|.++..+...-..+|.+||.++.+++.|++++.....    .+++ +|++..+.++.+ .+|
T Consensus       125 ~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l----~~~v-~~~~~D~~~~~~-~~f  190 (284)
T 1nv8_A          125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV----SDRF-FVRKGEFLEPFK-EKF  190 (284)
T ss_dssp             CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC----TTSE-EEEESSTTGGGG-GGT
T ss_pred             CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCce-EEEECcchhhcc-ccc
Confidence            58999999999999885544256999999999999999998754211    1234 788888877544 356

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.83  E-value=2e-05  Score=74.61  Aligned_cols=68  Identities=13%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|.++..+......+|.+||+++ +++.|++++.....    ..+| ++++..+.++.+..+||
T Consensus       159 ~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl----~~~v-~~~~~d~~~~~~~~~fD  226 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNL----TDRI-VVIPGKVEEVSLPEQVD  226 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTC----TTTE-EEEESCTTTCCCSSCEE
T ss_pred             CCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCC----CCcE-EEEECchhhCccCCCeE
Confidence            468999999999999864433346999999999 99999988754211    1344 88999998876555776

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.83  E-value=9.7e-06  Score=68.61  Aligned_cols=61  Identities=20%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             ceeeeccCCccccchHHHHhh-ccCeeEEecCc-HHHHHHH---HHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIR-YFNEVDLLEPV-SHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv-~~Fle~A---re~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||.|+++..+... ...+|..||++ +.|++.|   +++......     ..+ .+.+...+++
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-----~~v-~~~~~d~~~l   90 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-----SNV-VFVIAAAESL   90 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-----SSE-EEECCBTTBC
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-----CCe-EEEEcCHHHh
Confidence            468999999999999875422 24589999999 8888887   665533211     223 6777777777

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.82  E-value=8.3e-06  Score=68.71  Aligned_cols=59  Identities=19%  Similarity=0.152  Sum_probs=43.5

Q ss_pred             eeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .++||+|||+|.++..+ ++.+  ..|..||+++.+++.|++++.....     ..| .+++..+.++
T Consensus        36 ~~vLDiGcG~G~~~~~l-A~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-----~nv-~~~~~Da~~~   96 (218)
T 3dxy_A           36 PVTLEIGFGMGASLVAM-AKDRPEQDFLGIEVHSPGVGACLASAHEEGL-----SNL-RVMCHDAVEV   96 (218)
T ss_dssp             CEEEEESCTTCHHHHHH-HHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-----SSE-EEECSCHHHH
T ss_pred             CeEEEEeeeChHHHHHH-HHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-----CcE-EEEECCHHHH
Confidence            58999999999999874 5544  4699999999999999988744211     122 5666665553

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.82  E-value=1.5e-06  Score=69.54  Aligned_cols=46  Identities=20%  Similarity=0.223  Sum_probs=27.1

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..++||+|||+|.++..++... ..+|..||.++.+++.|++++..
T Consensus        30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~   76 (215)
T 4dzr_A           30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER   76 (215)
T ss_dssp             TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------
T ss_pred             CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence            45799999999999998855543 23999999999999999998754

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.82  E-value=4.5e-06  Score=70.15  Aligned_cols=60  Identities=10%  Similarity=0.009  Sum_probs=44.2

Q ss_pred             eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      .++||+|||+|..|..|+...  -.+|..||+++.+++.|++++.....    ..+| ++++....+
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i-~~~~~d~~~  135 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV----AEKI-SLRLGPALA  135 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGE-EEEESCHHH
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEEcCHHH
Confidence            589999999999998855443  24999999999999999998744211    1233 666666443

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.80  E-value=2e-05  Score=66.29  Aligned_cols=46  Identities=20%  Similarity=0.093  Sum_probs=38.3

Q ss_pred             cceeeeccCCccccchHHHHhh--c-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIR--Y-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~--~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ...++||+|||+|.++..++..  . ..+|..||.++.+++.|++++..
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~   99 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL   99 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHH
Confidence            3469999999999999876544  1 35899999999999999988744

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.79  E-value=1.5e-05  Score=72.55  Aligned_cols=67  Identities=10%  Similarity=0.091  Sum_probs=51.5

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc---CCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT---NIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~---Pe~~YD  231 (232)
                      .+|||+|||.|.+++.++..+ ..+|++||.++.+++.|++++...     ...++ ++++....+|.   +..+||
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-----~~~rv-~v~~~Da~~~l~~~~~~~fD  161 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-----RAPRV-KIRVDDARMVAESFTPASRD  161 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-----CTTTE-EEEESCHHHHHHTCCTTCEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-----CCCce-EEEECcHHHHHhhccCCCCC
Confidence            489999999999999866533 348999999999999999998542     12455 78887776663   234676

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.79  E-value=2.5e-05  Score=70.63  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=47.3

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCC--C-CCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHM--A-PDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~--~-~~~~rv~n~~~vgLQdF  224 (232)
                      +..+|||+|||+|+++..|+...  ..+|..||+++.+++.|++++......  + ....++ +|.+..++++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v-~~~~~d~~~l  154 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV-RFLKGFIENL  154 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCE-EEEESCTTCG
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCce-EEEEccHHHh
Confidence            44689999999999998755443  249999999999999999876321000  0 001234 7888888875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.77  E-value=4.4e-05  Score=64.67  Aligned_cols=70  Identities=17%  Similarity=0.103  Sum_probs=49.3

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCC-CCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~-~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      ..++||+|||+|.+|..++..+  ..+|..||+++.+++.|++++... ...   ...+ ++.+..+.+.. ++..||
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~---~~~v-~~~~~d~~~~~~~~~~~D  173 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP---PDNW-RLVVSDLADSELPDGSVD  173 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC---CTTE-EEECSCGGGCCCCTTCEE
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC---CCcE-EEEECchHhcCCCCCcee
Confidence            4689999999999998865443  569999999999999999987431 000   0233 66776666653 233555

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.77  E-value=1.5e-05  Score=65.58  Aligned_cols=73  Identities=16%  Similarity=0.208  Sum_probs=48.1

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..++||+|||+|.+|..+ ++.+   .+|..||+++.+++.|++++...........++ ++.+..+.+..+ ...||
T Consensus        77 ~~~~vLDiG~G~G~~~~~l-a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           77 EGAKALDVGSGSGILTACF-ARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV-QLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             TTCEEEEETCTTSHHHHHH-HHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE-EEEESCGGGCCGGGCCEE
T ss_pred             CCCEEEEEcCCcCHHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE-EEEECCcccCcccCCCcC
Confidence            3468999999999999874 5544   599999999999999998874310000000233 666666654322 33565

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.77  E-value=2.9e-05  Score=66.54  Aligned_cols=45  Identities=16%  Similarity=0.094  Sum_probs=36.0

Q ss_pred             cceeeeccCCccccchHHHHhh-ccCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||+|||+|+.+ .++.. .+.+|..||+++.|++.|++++..
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~  116 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQE  116 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhh
Confidence            3468999999999955 33433 367999999999999999987643

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.76  E-value=5.6e-06  Score=70.26  Aligned_cols=60  Identities=18%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ...++||+|||+|.+|..+ ++.+.+|..||.++.+++.|++++..       ..++ ++++..+.++.
T Consensus        29 ~~~~VLDiG~G~G~~~~~l-~~~~~~v~~id~~~~~~~~a~~~~~~-------~~~v-~~~~~D~~~~~   88 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKL-AKISKQVTSIELDSHLFNLSSEKLKL-------NTRV-TLIHQDILQFQ   88 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHH-HHHSSEEEESSSSCSSSSSSSCTTTT-------CSEE-EECCSCCTTTT
T ss_pred             CCCEEEEEeCCCCHHHHHH-HHhCCeEEEEECCHHHHHHHHHHhcc-------CCce-EEEECChhhcC
Confidence            3468999999999999874 55568999999999999999887642       1233 66666666654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.76  E-value=7.7e-06  Score=67.77  Aligned_cols=73  Identities=15%  Similarity=0.093  Sum_probs=47.6

Q ss_pred             ceeeeccCCccccchHHHHhhcc-------CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQ  229 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-------~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~  229 (232)
                      ..++||+|||+|..|..++...-       .+|..||+++.+++.|++++...........++ ++.+..+.+..|+ ..
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~  163 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL-LIVEGDGRKGYPPNAP  163 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE-EEEESCGGGCCGGGCS
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCce-EEEECCcccCCCcCCC
Confidence            46899999999999987443332       389999999999999998864310000000233 6666666553333 46


Q ss_pred             CC
Q 026812          230 YH  231 (232)
Q Consensus       230 YD  231 (232)
                      ||
T Consensus       164 fD  165 (227)
T 1r18_A          164 YN  165 (227)
T ss_dssp             EE
T ss_pred             cc
Confidence            66

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.75  E-value=3.7e-05  Score=67.86  Aligned_cols=65  Identities=18%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCC------CCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~------~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..+|||+|||.|.+|..+ ++.+   .+|..||+++.+++.|++++...      +.......++ ++++..+.++
T Consensus       106 g~~VLDiG~G~G~~~~~l-a~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v-~~~~~d~~~~  179 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFL-SKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-DFIHKDISGA  179 (336)
T ss_dssp             TCEEEEECCTTSHHHHHH-HHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-EEEESCTTCC
T ss_pred             CCEEEEeCCCcCHHHHHH-HHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce-EEEECChHHc
Confidence            468999999999999875 4443   79999999999999999987531      0000001234 7788887775

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.73  E-value=2.9e-05  Score=68.80  Aligned_cols=44  Identities=11%  Similarity=0.061  Sum_probs=37.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ..+|||+|||.|+.+..++.....+|+.||+++.|++.|++...
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~   92 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYN   92 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHH
Confidence            46899999999998877666666799999999999999998653

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.73  E-value=1.3e-05  Score=73.27  Aligned_cols=80  Identities=5%  Similarity=-0.123  Sum_probs=57.6

Q ss_pred             cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCC-
Q 026812          133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-  211 (232)
Q Consensus       133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~-  211 (232)
                      .|-...+.++..+..         ...++||+|||+|.+|..++...+.+|..||.++.+++.|++|+.....    .. 
T Consensus       197 ~~~~~~~~~~~~~~~---------~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~----~~~  263 (385)
T 2b78_A          197 LDQRQVRNELINGSA---------AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL----DMA  263 (385)
T ss_dssp             GGGHHHHHHHHHTTT---------BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC----CCT
T ss_pred             CcHHHHHHHHHHHhc---------CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----Ccc
Confidence            444556667765421         2358999999999999986554677999999999999999999855211    11 


Q ss_pred             CcceEEEecCCCccC
Q 026812          212 KATNFFCVPLQVITN  226 (232)
Q Consensus       212 rv~n~~~vgLQdF~P  226 (232)
                      ++ +|++..+.+|-+
T Consensus       264 ~v-~~~~~D~~~~l~  277 (385)
T 2b78_A          264 NH-QLVVMDVFDYFK  277 (385)
T ss_dssp             TE-EEEESCHHHHHH
T ss_pred             ce-EEEECCHHHHHH
Confidence            33 788887766543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.73  E-value=2e-05  Score=71.68  Aligned_cols=76  Identities=18%  Similarity=0.181  Sum_probs=54.7

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      ..+.++..+.          ...++||+|||+|.+|..+....+.+|..||.++.+++.|++++......   ..++ ++
T Consensus       210 ~~~~~l~~~~----------~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~---~~~v-~~  275 (396)
T 3c0k_A          210 DSRLATRRYV----------ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD---LSKA-EF  275 (396)
T ss_dssp             HHHHHHHHHC----------TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC---GGGE-EE
T ss_pred             HHHHHHHHhh----------CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC---ccce-EE
Confidence            4466676652          12589999999999999865544689999999999999999998542100   0133 77


Q ss_pred             EEecCCCccC
Q 026812          217 FCVPLQVITN  226 (232)
Q Consensus       217 ~~vgLQdF~P  226 (232)
                      ++..+.++.+
T Consensus       276 ~~~D~~~~~~  285 (396)
T 3c0k_A          276 VRDDVFKLLR  285 (396)
T ss_dssp             EESCHHHHHH
T ss_pred             EECCHHHHHH
Confidence            8877766643

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.72  E-value=9.1e-06  Score=73.77  Aligned_cols=62  Identities=19%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|.+|..++.. +.+|..||.++.+++.|++++.....     .. .++++....++.+
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~-----~~-~~~~~~d~~~~~~  271 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL-----GN-VRVLEANAFDLLR  271 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC-----TT-EEEEESCHHHHHH
T ss_pred             CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-----CC-ceEEECCHHHHHH
Confidence            368999999999999986555 88999999999999999999855211     12 3788888777654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.72  E-value=5.1e-06  Score=72.54  Aligned_cols=62  Identities=16%  Similarity=0.078  Sum_probs=46.6

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcH-------HHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS-------HFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~-------~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..++||+|||+|++|.. |+....+|.+||.++       .+++.|++++.....    ..+| ++++....++.
T Consensus        84 ~~~VLDlgcG~G~~a~~-lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~----~~ri-~~~~~d~~~~l  152 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFV-LASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDT----AARI-NLHFGNAAEQM  152 (258)
T ss_dssp             CCCEEETTCTTCHHHHH-HHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH----HTTE-EEEESCHHHHH
T ss_pred             cCeEEEeeCccCHHHHH-HHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC----ccCe-EEEECCHHHHH
Confidence            35899999999999986 566677999999999       999999887533100    1234 78888777653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.71  E-value=2.3e-06  Score=73.12  Aligned_cols=77  Identities=16%  Similarity=0.101  Sum_probs=53.9

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcc
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT  214 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~  214 (232)
                      ....||..+...       .+..+|||+|||+|..|..|+...  ..+|+.||+++.+++.|++++.....    ..+| 
T Consensus        47 ~~~~~l~~l~~~-------~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~----~~~i-  114 (242)
T 3r3h_A           47 EQAQFMQMLIRL-------TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ----EHKI-  114 (242)
T ss_dssp             HHHHHHHHHHHH-------HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC----TTTE-
T ss_pred             HHHHHHHHHHhh-------cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-
Confidence            345677666431       123589999999999998754432  35999999999999999998855321    2344 


Q ss_pred             eEEEecCCCcc
Q 026812          215 NFFCVPLQVIT  225 (232)
Q Consensus       215 n~~~vgLQdF~  225 (232)
                      ++++....++-
T Consensus       115 ~~~~gda~~~l  125 (242)
T 3r3h_A          115 KLRLGPALDTL  125 (242)
T ss_dssp             EEEESCHHHHH
T ss_pred             EEEEcCHHHHH
Confidence            77776665543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.69  E-value=1.1e-05  Score=69.09  Aligned_cols=43  Identities=26%  Similarity=0.115  Sum_probs=36.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l  200 (232)
                      ..++||+|||+|.+|..|+...+.+|..||+++.|++.|+++.
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            4589999999999998866654569999999999999988753

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.69  E-value=6.2e-05  Score=68.09  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .++||+|||+|.+|.. |++.+.+|..||.++.+++.|++|+.....     ..+ +|++....++
T Consensus       215 ~~vLDl~cG~G~~~l~-la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-----~~v-~~~~~d~~~~  273 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLA-LARNFDRVLATEIAKPSVAAAQYNIAANHI-----DNV-QIIRMAAEEF  273 (369)
T ss_dssp             SEEEEESCTTSHHHHH-HGGGSSEEEEECCCHHHHHHHHHHHHHTTC-----CSE-EEECCCSHHH
T ss_pred             CEEEEccCCCCHHHHH-HHhcCCEEEEEECCHHHHHHHHHHHHHcCC-----Cce-EEEECCHHHH
Confidence            4799999999999985 777889999999999999999999854211     223 6777666655

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.69  E-value=8.9e-05  Score=76.02  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=52.7

Q ss_pred             ceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCC-CCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~-~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..+|||+|||+|+++.. |++.+   .+|..||+++.|++.|++++....... ....+| +|++..+.++.+. ..||
T Consensus       722 g~rVLDVGCGTG~lai~-LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nV-efiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDS-LLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA-TLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             CSEEEEETCSSSHHHHH-HTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEE-EEEESCTTSCCTTSCSCC
T ss_pred             CCEEEEECCCCCHHHHH-HHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCce-EEEECchHhCCcccCCee
Confidence            46899999999999986 56665   699999999999999998653210000 001234 8899999888765 4777

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.68  E-value=3.6e-05  Score=65.64  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=45.4

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCC-CCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~-~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||.|.++.. |++.+  ..|..||+++.+++.|++++...... ......| ++++..+.++
T Consensus        47 ~~~vLDiGcG~G~~~~~-la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv-~~~~~d~~~~  114 (235)
T 3ckk_A           47 QVEFADIGCGYGGLLVE-LSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNI-ACLRSNAMKH  114 (235)
T ss_dssp             CEEEEEETCTTCHHHHH-HGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTE-EEEECCTTTC
T ss_pred             CCeEEEEccCCcHHHHH-HHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeE-EEEECcHHHh
Confidence            46899999999999987 55554  58999999999999998765310000 0001233 7788887763

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.68  E-value=2.1e-05  Score=68.10  Aligned_cols=63  Identities=11%  Similarity=0.020  Sum_probs=47.3

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|..|..++...  ..+|.+||.++.+++.+++++.....     ..+ ++++....++.+
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-----~~v-~~~~~D~~~~~~  148 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-----LNT-IIINADMRKYKD  148 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEESCHHHHHH
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-----CcE-EEEeCChHhcch
Confidence            4689999999999998855432  36999999999999999998754211     233 677777666543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.63  E-value=2.5e-05  Score=73.36  Aligned_cols=85  Identities=14%  Similarity=0.047  Sum_probs=59.5

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      .|...++......+.     ...++||+|||+|..|.. |++.+.+|..||.++.+++.|++|+.....   .-.+| ++
T Consensus        78 at~e~vA~~~a~~l~-----~g~~VLDLgcG~G~~al~-LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~---gl~~i-~~  147 (410)
T 3ll7_A           78 SSGAVTSSYKSRFIR-----EGTKVVDLTGGLGIDFIA-LMSKASQGIYIERNDETAVAARHNIPLLLN---EGKDV-NI  147 (410)
T ss_dssp             SCCHHHHHHGGGGSC-----TTCEEEESSCSSSHHHHH-HHTTCSEEEEEESCHHHHHHHHHHHHHHSC---TTCEE-EE
T ss_pred             cCHHHHHHHHHHhcC-----CCCEEEEeCCCchHHHHH-HHhcCCEEEEEECCHHHHHHHHHhHHHhcc---CCCcE-EE
Confidence            445556555443321     136899999999999975 777788999999999999999999853100   00233 78


Q ss_pred             EEecCCCccCC---CCCC
Q 026812          217 FCVPLQVITNI---IQYH  231 (232)
Q Consensus       217 ~~vgLQdF~Pe---~~YD  231 (232)
                      ++..+.+|-+.   ..||
T Consensus       148 i~~Da~~~L~~~~~~~fD  165 (410)
T 3ll7_A          148 LTGDFKEYLPLIKTFHPD  165 (410)
T ss_dssp             EESCGGGSHHHHHHHCCS
T ss_pred             EECcHHHhhhhccCCCce
Confidence            88888876332   3666

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.63  E-value=6.1e-05  Score=66.86  Aligned_cols=68  Identities=13%  Similarity=0.058  Sum_probs=48.6

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..+|||+|||+|..|..++...  ..+|.+||+++.+++.|++++.....     ..| ++.+....++.+ ...||
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-----~~v-~~~~~D~~~~~~~~~~fD  189 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-----LNV-ILFHSSSLHIGELNVEFD  189 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-----CSE-EEESSCGGGGGGGCCCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-----CeE-EEEECChhhcccccccCC
Confidence            4689999999999998855443  25899999999999999998754211     122 566666666543 23555

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.62  E-value=0.00012  Score=65.50  Aligned_cols=60  Identities=22%  Similarity=0.257  Sum_probs=47.9

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||||||+|..|..++... ..+|..||.++.+++.|++++...      ..++ ++++..+.++
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~------g~~v-~~v~~d~~~l   87 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF------SDRV-SLFKVSYREA   87 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG------TTTE-EEEECCGGGH
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc------CCcE-EEEECCHHHH
Confidence            3589999999999999866554 369999999999999999988542      1344 7788777765

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.61  E-value=2.3e-05  Score=71.21  Aligned_cols=64  Identities=14%  Similarity=0.039  Sum_probs=49.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..++||+|||+|.+|..+....+.+|..||.++.+++.|++++.....    ..++ ++++..+.++.+
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~----~~~v-~~~~~d~~~~~~  281 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV----EDRM-KFIVGSAFEEME  281 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC----GGGE-EEEESCHHHHHH
T ss_pred             CCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----Cccc-eEEECCHHHHHH
Confidence            358999999999999885544467999999999999999999854211    0133 788887776643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.60  E-value=4e-05  Score=68.61  Aligned_cols=65  Identities=11%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.+|.. +. ...+|..||.++.+++.|++|+.....    ..++ ++++....+|.  .+||
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l----~~~v-~~~~~D~~~~~--~~fD  260 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKL----EHKI-IPILSDVREVD--VKGN  260 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEESCGGGCC--CCEE
T ss_pred             CCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCC----CCcE-EEEECChHHhc--CCCc
Confidence            35899999999999988 55 678999999999999999999855211    1233 78888777664  4444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.56  E-value=7.2e-05  Score=66.69  Aligned_cols=68  Identities=16%  Similarity=0.108  Sum_probs=52.5

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      +..++||+|||+|.++..+. ..+   .+|..+|.++.+++.|++++.....     ..| +|.+..++++.+.. .||
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a-~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~-----~~i-~~~~~D~~~~~~~~~~~D  274 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAA-STLGPTSPVYAGDLDEKRLGLAREAALASGL-----SWI-RFLRADARHLPRFFPEVD  274 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHH-HHHCTTSCEEEEESCHHHHHHHHHHHHHTTC-----TTC-EEEECCGGGGGGTCCCCS
T ss_pred             CCCEEEeCCCCcCHHHHHHH-HhhCCCceEEEEECCHHHHHHHHHHHHHcCC-----Cce-EEEeCChhhCccccCCCC
Confidence            34689999999999998854 444   7999999999999999999865211     133 88999999886533 455

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.56  E-value=5.1e-05  Score=65.91  Aligned_cols=68  Identities=13%  Similarity=0.049  Sum_probs=48.9

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++... ..+|..+|++ .+++.|++++.....    ..+| ++.+..+.+..+...||
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~D  234 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV----ASRY-HTIAGSAFEVDYGNDYD  234 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC----GGGE-EEEESCTTTSCCCSCEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC----Ccce-EEEecccccCCCCCCCc
Confidence            4689999999999998865543 3589999999 999999988643211    1234 77777776654333465

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.54  E-value=0.00014  Score=65.10  Aligned_cols=68  Identities=15%  Similarity=0.081  Sum_probs=50.5

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-C-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-N-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-P-e~~YD  231 (232)
                      ..++||+|||+|.++..++... -.+|..+|. +.+++.|++++.....    ..+| ++.+..+.+.. | +..||
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~p~~~D  250 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG----SERI-HGHGANLLDRDVPFPTGFD  250 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT----GGGE-EEEECCCCSSSCCCCCCCS
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc----ccce-EEEEccccccCCCCCCCcC
Confidence            3689999999999999866543 248999999 9999999998865221    1344 77888877753 2 24677

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.53  E-value=3.8e-05  Score=67.20  Aligned_cols=36  Identities=14%  Similarity=-0.002  Sum_probs=29.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA  195 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~  195 (232)
                      +..+|||+|||+|..|.. |++. .+|..||.++ |+..
T Consensus        74 ~g~~VLDlGcGtG~~s~~-la~~-~~V~gvD~s~-m~~~  109 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYY-AASR-PHVMDVRAYT-LGVG  109 (265)
T ss_dssp             CCEEEEEESCTTSHHHHH-HHTS-TTEEEEEEEC-CCCS
T ss_pred             CCCEEEEeCcCCCHHHHH-HHHc-CcEEEEECch-hhhh
Confidence            357999999999999976 5665 7999999998 5433

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.52  E-value=0.00011  Score=65.07  Aligned_cols=68  Identities=16%  Similarity=0.108  Sum_probs=48.9

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..++||+|||+|.++..++... --+|..+|+ +.+++.|++++.....    ..+| ++.+..+.+..|. .||
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~-~~D  250 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL----ADRV-TVAEGDFFKPLPV-TAD  250 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCSC-CEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC----CCce-EEEeCCCCCcCCC-CCC
Confidence            34689999999999998865553 248999999 9999999998754211    1244 7788877653343 355

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.52  E-value=7.2e-05  Score=64.87  Aligned_cols=42  Identities=12%  Similarity=0.148  Sum_probs=36.4

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecC-cHHHHHHHHHHh
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEP-VSHFLDAARESL  200 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEP-v~~Fle~Are~l  200 (232)
                      ..+|||+|||+|.++.. |++. ..+|.+||. ++.+++.|++++
T Consensus        80 ~~~vLDlG~G~G~~~~~-~a~~~~~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIV-AFLAGADQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             TCEEEETTCTTSHHHHH-HHHTTCSEEEEEECSCHHHHHHHHHHH
T ss_pred             CCeEEEecccccHHHHH-HHHcCCCEEEEEeCCCHHHHHHHHHHH
Confidence            35899999999999986 4554 459999999 899999999988

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.51  E-value=6.8e-05  Score=68.05  Aligned_cols=68  Identities=18%  Similarity=0.053  Sum_probs=52.0

Q ss_pred             ceeeeccCCccccchHHHHhhccC--eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~--~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..++||+|||+|.++..+ +..+.  +|..+|.++.+++.|++++.....    ...| ++.+..+.++.+. ..||
T Consensus       218 ~~~vLD~gCGsG~~~i~~-a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl----~~~i-~~~~~D~~~~~~~~~~fD  288 (373)
T 3tm4_A          218 GGSVLDPMCGSGTILIEL-ALRRYSGEIIGIEKYRKHLIGAEMNALAAGV----LDKI-KFIQGDATQLSQYVDSVD  288 (373)
T ss_dssp             SCCEEETTCTTCHHHHHH-HHTTCCSCEEEEESCHHHHHHHHHHHHHTTC----GGGC-EEEECCGGGGGGTCSCEE
T ss_pred             CCEEEEccCcCcHHHHHH-HHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC----CCce-EEEECChhhCCcccCCcC
Confidence            358999999999999874 55554  999999999999999999854211    1233 8889888887643 4665

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.51  E-value=3.7e-05  Score=69.09  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=34.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are  198 (232)
                      ..++||+|||+|.+|..|+.....+|.+||+++.|++.+.+
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred             ccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            45899999999999987665556799999999999998544

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.51  E-value=3.5e-05  Score=71.29  Aligned_cols=59  Identities=10%  Similarity=0.023  Sum_probs=45.1

Q ss_pred             chhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       134 Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      |-..++.++..+..         +..++||+|||+|..|..++.. ...|..||.++.+++.|++|+..
T Consensus       200 dqr~~r~~l~~~~~---------~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~  258 (393)
T 4dmg_A          200 DQRENRRLFEAMVR---------PGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALR  258 (393)
T ss_dssp             GGHHHHHHHHTTCC---------TTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhc---------CCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHH
Confidence            33455666665422         2368999999999999986554 44599999999999999999754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.50  E-value=6.9e-05  Score=74.14  Aligned_cols=85  Identities=12%  Similarity=0.000  Sum_probs=60.9

Q ss_pred             cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCC
Q 026812          133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK  212 (232)
Q Consensus       133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~r  212 (232)
                      .|-...+.+|..+..          ..++||+|||+|.+|..++.....+|+.||.++.+++.|++|+.....   +..+
T Consensus       525 ~d~r~~r~~l~~~~~----------g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl---~~~~  591 (703)
T 3v97_A          525 LDHRIARRMLGQMSK----------GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGL---TGRA  591 (703)
T ss_dssp             GGGHHHHHHHHHHCT----------TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSTT
T ss_pred             ccHHHHHHHHHHhcC----------CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC---Cccc
Confidence            344456677776432          258999999999999997777677899999999999999999855211   0123


Q ss_pred             cceEEEecCCCccC--CCCCC
Q 026812          213 ATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       213 v~n~~~vgLQdF~P--e~~YD  231 (232)
                      + ++++..+.+|-+  ..+||
T Consensus       592 v-~~i~~D~~~~l~~~~~~fD  611 (703)
T 3v97_A          592 H-RLIQADCLAWLREANEQFD  611 (703)
T ss_dssp             E-EEEESCHHHHHHHCCCCEE
T ss_pred             e-EEEecCHHHHHHhcCCCcc
Confidence            4 778877766532  23565

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.49  E-value=0.00015  Score=63.47  Aligned_cols=68  Identities=15%  Similarity=0.012  Sum_probs=49.6

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...++||+|||+|.++..++... -.+|..+|. +.+++.|++++.....    ..+| +|.+..+.+-.|. .||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~p~-~~D  237 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL----SGRA-QVVVGSFFDPLPA-GAG  237 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCCC-SCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc----CcCe-EEecCCCCCCCCC-CCc
Confidence            34699999999999999866543 247999999 9999999988754211    2445 7777777544444 676

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.46  E-value=6.9e-05  Score=65.97  Aligned_cols=68  Identities=18%  Similarity=0.123  Sum_probs=50.4

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc--CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT--NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~--Pe~~YD  231 (232)
                      ..++||+|||+|.++..++... -.+|..+|. +.+++.|++++.....    ..+| ++.+..+.+..  +...||
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~~~~~~D  250 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL----GGRV-EFFEKNLLDARNFEGGAAD  250 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC----GGGE-EEEECCTTCGGGGTTCCEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC----CCce-EEEeCCcccCcccCCCCcc
Confidence            5699999999999999866543 248999999 8899999988754221    1344 77888877765  455576

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.44  E-value=0.00012  Score=60.11  Aligned_cols=55  Identities=16%  Similarity=0.141  Sum_probs=41.8

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      .++||+|||.|+++..+ +..    ..||+++.+++.|+++            ++ ++++..++++... ..||
T Consensus        49 ~~vLDiG~G~G~~~~~l-~~~----~~vD~s~~~~~~a~~~------------~~-~~~~~d~~~~~~~~~~fD  104 (219)
T 1vlm_A           49 GRGVEIGVGTGRFAVPL-KIK----IGVEPSERMAEIARKR------------GV-FVLKGTAENLPLKDESFD  104 (219)
T ss_dssp             SCEEEETCTTSTTHHHH-TCC----EEEESCHHHHHHHHHT------------TC-EEEECBTTBCCSCTTCEE
T ss_pred             CcEEEeCCCCCHHHHHH-HHH----hccCCCHHHHHHHHhc------------CC-EEEEcccccCCCCCCCee
Confidence            58999999999999864 443    8999999999999985            12 6677777766432 3555

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.43  E-value=0.00021  Score=64.17  Aligned_cols=68  Identities=19%  Similarity=0.149  Sum_probs=50.3

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...++||+|||+|.++..++... -.+|..+|. +.+++.|++++.....    ..+| +|.+..+.+..|. .||
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l----~~~v-~~~~~d~~~~~p~-~~D  270 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL----ADRC-EILPGDFFETIPD-GAD  270 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTE-EEEECCTTTCCCS-SCS
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc----CCce-EEeccCCCCCCCC-Cce
Confidence            34699999999999999865543 238999999 9999999998754211    2455 7788777655554 676

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.43  E-value=0.00013  Score=65.85  Aligned_cols=67  Identities=7%  Similarity=0.051  Sum_probs=49.8

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC---CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI---IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe---~~YD  231 (232)
                      ..++||+| |+|.++..+..... .+|++||.++.+++.|++++.....     .+| ++++..+.++-|.   ..||
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~-----~~v-~~~~~D~~~~l~~~~~~~fD  243 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-----EDI-EIFTFDLRKPLPDYALHKFD  243 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC-----CCE-EEECCCTTSCCCTTTSSCBS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCE-EEEEChhhhhchhhccCCcc
Confidence            46899999 99999987543333 6999999999999999999754211     244 7888888774332   3677

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.42  E-value=0.0002  Score=63.56  Aligned_cols=62  Identities=19%  Similarity=0.245  Sum_probs=46.3

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      +..++||+|||+|.++..++... -.+|..+|+ +.+++.|++++.....    ..+| ++.+..+.+.
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~  252 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV----ADRM-RGIAVDIYKE  252 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC----TTTE-EEEECCTTTS
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC----CCCE-EEEeCccccC
Confidence            34689999999999998855443 238999999 9999999998754211    1344 7777777665

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.39  E-value=0.00017  Score=63.60  Aligned_cols=67  Identities=19%  Similarity=0.130  Sum_probs=47.6

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++.... -++..+|. +.+++.|++++.....    ..+| ++.+..+.+..|. .||
T Consensus       184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~----~~~v-~~~~~d~~~~~~~-~~D  251 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL----SDRV-DVVEGDFFEPLPR-KAD  251 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCSS-CEE
T ss_pred             CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC----CCce-EEEeCCCCCCCCC-Ccc
Confidence            46899999999999988655542 37788888 9999999998754211    1344 7788877654443 365

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.38  E-value=0.00029  Score=61.33  Aligned_cols=46  Identities=9%  Similarity=0.031  Sum_probs=38.8

Q ss_pred             CcceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+|||+|||+|..|.+ |++..   .+|-+||.++.|++.|+++...
T Consensus        76 kpG~~VldlG~G~G~~~~~-la~~VG~~G~V~avD~s~~~~~~l~~~a~~  124 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASH-MSDIIGPRGRIYGVEFAPRVMRDLLTVVRD  124 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHH-HHHHHCTTCEEEEEECCHHHHHHHHHHSTT
T ss_pred             CCCCEEEEecCcCCHHHHH-HHHHhCCCceEEEEeCCHHHHHHHHHhhHh
Confidence            3457999999999999987 56653   5899999999999999987644

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.37  E-value=0.00017  Score=65.23  Aligned_cols=42  Identities=19%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES  199 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~  199 (232)
                      +..++||+|||.|+++..|. +...+|..||+++.|++.|++.
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~-~~g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQ-EAGVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHH-HTTCEEEEECCCHHHHHHHHTT
T ss_pred             CCCEEEEecCCCCHHHHHHH-HcCCcEEEECCCHHHHHHHHHc
Confidence            34689999999999998754 4555999999999999999875

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.33  E-value=9.2e-05  Score=65.22  Aligned_cols=37  Identities=14%  Similarity=0.115  Sum_probs=30.1

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA  196 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~A  196 (232)
                      +..+|||+|||+|..|.. |++. .+|..||.++ |+..+
T Consensus        82 ~g~~VLDlGcGtG~~s~~-la~~-~~V~gVD~s~-m~~~a  118 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYY-AASQ-PNVREVKAYT-LGTSG  118 (276)
T ss_dssp             CCEEEEEESCTTCHHHHH-HHTS-TTEEEEEEEC-CCCTT
T ss_pred             CCCEEEEeccCCCHHHHH-HHHc-CCEEEEECch-hhhhh
Confidence            457999999999999976 5565 7999999998 65443

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.29  E-value=0.00047  Score=64.08  Aligned_cols=62  Identities=6%  Similarity=-0.039  Sum_probs=46.3

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..+|||+|||+|..|..+....-  .+|.++|+++.+++.+++++.....     ..| ++.+..+.++.
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-----~~v-~~~~~D~~~~~  323 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-----KIV-KPLVKDARKAP  323 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSE-EEECSCTTCCS
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-----CcE-EEEEcChhhcc
Confidence            46899999999999998554432  5899999999999999998754211     122 56666666654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.27  E-value=5.9e-05  Score=64.09  Aligned_cols=54  Identities=7%  Similarity=-0.138  Sum_probs=42.4

Q ss_pred             eeeeccCCccccchHHHHhhc------cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRY------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~------f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .+|||+|||+|..|.. |++.      ..+|..||.++.+++.|+. +         ..+| ++++..+.++
T Consensus        83 ~~VLDiG~GtG~~t~~-la~~~~~~~~~~~V~gvD~s~~~l~~a~~-~---------~~~v-~~~~gD~~~~  142 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAW-FRDLTKIMGIDCQVIGIDRDLSRCQIPAS-D---------MENI-TLHQGDCSDL  142 (236)
T ss_dssp             SEEEEECCTTSHHHHH-HHHHHHHTTCCCEEEEEESCCTTCCCCGG-G---------CTTE-EEEECCSSCS
T ss_pred             CEEEEEeCCCCHHHHH-HHHhhhhcCCCCEEEEEeCChHHHHHHhc-c---------CCce-EEEECcchhH
Confidence            5899999999999986 4554      4699999999999998872 2         1344 7788888775

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.21  E-value=0.00039  Score=65.90  Aligned_cols=69  Identities=9%  Similarity=0.005  Sum_probs=48.8

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      +..+|||+|||+|..|..+...+  -.+|.+||.++.+++.|++++.....     ..| .+.+....++.+  ...||
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-----~nv-~~~~~D~~~~~~~~~~~fD  189 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-----SNV-ALTHFDGRVFGAAVPEMFD  189 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-----CSE-EEECCCSTTHHHHSTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CcE-EEEeCCHHHhhhhccccCC
Confidence            34689999999999998854433  25899999999999999998854210     122 566666666542  23555

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.17  E-value=0.00028  Score=62.03  Aligned_cols=65  Identities=15%  Similarity=0.090  Sum_probs=44.4

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCC---CCCCC-CCCCcceEEEecCCCcc
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE---NHMAP-DMHKATNFFCVPLQVIT  225 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~---~~~~~-~~~rv~n~~~vgLQdF~  225 (232)
                      .+|||||||+|+.|.. |+....+|+.||.++.+++.+++++...   ..... -..++ ++++.+..+|-
T Consensus        90 ~~VLDl~~G~G~dal~-lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i-~~~~~D~~~~L  158 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFV-LASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL-QLIHASSLTAL  158 (258)
T ss_dssp             CCEEETTCTTCHHHHH-HHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHE-EEEESCHHHHS
T ss_pred             CEEEEcCCcCCHHHHH-HHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCE-EEEECCHHHHH
Confidence            6899999999999986 4555668999999999877777665321   00000 00233 67887766653

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.16  E-value=6.7e-05  Score=57.36  Aligned_cols=50  Identities=8%  Similarity=0.094  Sum_probs=37.0

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+|||+|.++..++...  ..+|..||+++ +++.               .++ ++.+..+.++
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------------~~~-~~~~~d~~~~   74 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------------VGV-DFLQGDFRDE   74 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------TTE-EEEESCTTSH
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------CcE-EEEEcccccc
Confidence            4589999999999998765543  26999999999 6532               122 6677777665

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.09  E-value=0.00094  Score=58.01  Aligned_cols=77  Identities=16%  Similarity=0.020  Sum_probs=52.5

Q ss_pred             hhHHHHHHHHhcCCCCCcCCCcceeeeccCCcc---ccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCC
Q 026812          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI---GRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDM  210 (232)
Q Consensus       136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGI---GRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~  210 (232)
                      ..++.|+..+......   .....++||+|||+   |.++.. +.+.+  .+|..||.++.|++.|++.+..       .
T Consensus        59 ~~~~~~~~~~~~~l~~---~~~~~~vLDlGcG~pt~G~~~~~-~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-------~  127 (274)
T 2qe6_A           59 IENRKVLVRGVRFLAG---EAGISQFLDLGSGLPTVQNTHEV-AQSVNPDARVVYVDIDPMVLTHGRALLAK-------D  127 (274)
T ss_dssp             HHHHHHHHHHHHHHHT---TTCCCEEEEETCCSCCSSCHHHH-HHHHCTTCEEEEEESSHHHHHHHHHHHTT-------C
T ss_pred             HHHhHHHHHHHHHHhh---ccCCCEEEEECCCCCCCChHHHH-HHHhCCCCEEEEEECChHHHHHHHHhcCC-------C
Confidence            3456677655321100   01235899999999   998854 44443  5899999999999999998843       1


Q ss_pred             CCcceEEEecCCCc
Q 026812          211 HKATNFFCVPLQVI  224 (232)
Q Consensus       211 ~rv~n~~~vgLQdF  224 (232)
                      .++ ++.+..+.+.
T Consensus       128 ~~v-~~~~~D~~~~  140 (274)
T 2qe6_A          128 PNT-AVFTADVRDP  140 (274)
T ss_dssp             TTE-EEEECCTTCH
T ss_pred             CCe-EEEEeeCCCc
Confidence            333 7888888653

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.08  E-value=0.00023  Score=67.64  Aligned_cols=46  Identities=17%  Similarity=0.009  Sum_probs=38.5

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||+|||+|..|..+...+-  .+|.+||.++.+++.|++++..
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r  148 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER  148 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            346899999999999988554432  4899999999999999998754

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.08  E-value=0.00065  Score=60.79  Aligned_cols=63  Identities=11%  Similarity=0.025  Sum_probs=47.1

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ..+|||+|||+|..|.+++..+  -.+|.++|.++.+++.+++++.....     ..| .+++....++.+
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-----~~v-~~~~~D~~~~~~  167 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----SCC-ELAEEDFLAVSP  167 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEECCGGGSCT
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CeE-EEEeCChHhcCc
Confidence            4689999999999998855543  25899999999999999999865211     123 666666666543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.05  E-value=0.00022  Score=62.33  Aligned_cols=66  Identities=18%  Similarity=0.142  Sum_probs=47.5

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++..++... -.+|..+|+ +.+++.|++++....    -..+| ++.+..+.+-.| ..||
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~----~~~~v-~~~~~d~~~~~~-~~~D  235 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLL----AGERV-SLVGGDMLQEVP-SNGD  235 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHH----HTTSE-EEEESCTTTCCC-SSCS
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcC----CCCcE-EEecCCCCCCCC-CCCC
Confidence            689999999999998865543 248999999 999999998764310    01344 777777765333 4576

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.05  E-value=0.00075  Score=60.10  Aligned_cols=65  Identities=9%  Similarity=-0.114  Sum_probs=49.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|.++..++  --.+|.++|.++.+++.+++++...       +--.++..+.+..=.|...||
T Consensus       106 p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~-------g~~~~~~v~D~~~~~~~~~~D  170 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK-------DWDFTFALQDVLCAPPAEAGD  170 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT-------TCEEEEEECCTTTSCCCCBCS
T ss_pred             CCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEeecccCCCCCCcc
Confidence            4689999999999998755  3469999999999999999987441       111256666666655666887

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.00  E-value=0.00059  Score=64.34  Aligned_cols=45  Identities=16%  Similarity=0.029  Sum_probs=36.7

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHH-------HHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAA-------RESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~A-------re~l~~  202 (232)
                      ...++||+|||+|+++.. |++.+  .+|..||.++.+++.|       ++++..
T Consensus       242 ~g~~VLDLGCGsG~la~~-LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~  295 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQ-AALECGCALSFGCEIMDDASDLTILQYEELKKRCKL  295 (433)
T ss_dssp             TTCEEEEESCTTSHHHHH-HHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHH-HHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH
Confidence            346899999999999987 45543  5899999999999988       777643

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.99  E-value=0.0005  Score=59.49  Aligned_cols=42  Identities=10%  Similarity=0.019  Sum_probs=33.5

Q ss_pred             CcceeeeccCCccccchHHHHhhccC---eeEEecCcHHHHHHHHH
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARE  198 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~---~VDLVEPv~~Fle~Are  198 (232)
                      .+..+|||+|||+|..|.+ |++...   +|.+||.++.|++.+.+
T Consensus        75 ~~g~~VLDlG~GtG~~t~~-la~~v~~~G~V~avD~s~~~l~~l~~  119 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISH-VSDIIELNGKAYGVEFSPRVVRELLL  119 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHH-HHHHHTTTSEEEEEECCHHHHHHHHH
T ss_pred             CCCCEEEEEeecCCHHHHH-HHHHhCCCCEEEEEECcHHHHHHHHH
Confidence            3457999999999999987 555543   99999999998765543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.96  E-value=0.00081  Score=64.01  Aligned_cols=67  Identities=10%  Similarity=-0.029  Sum_probs=45.3

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCC----CCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPE----NHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~----~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      +..++||+|||+|+++..+.... +.+|..||.++.+++.|+++....    ...+....+| +|++..+.+.
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rV-efi~GD~~~l  244 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY-TLERGDFLSE  244 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEE-EEEECCTTSH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCe-EEEECcccCC
Confidence            45689999999999998754443 346999999999999998753110    0000001344 7778777664

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.93  E-value=0.0011  Score=61.12  Aligned_cols=69  Identities=12%  Similarity=0.016  Sum_probs=53.1

Q ss_pred             ceeeeccCCccccchHHHHhhccC---------------------------------------eeEEecCcHHHHHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFN---------------------------------------EVDLLEPVSHFLDAARE  198 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~---------------------------------------~VDLVEPv~~Fle~Are  198 (232)
                      ...+||.+||+|.+.........+                                       +|..||.++.+++.|++
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            457999999999998875443322                                       49999999999999999


Q ss_pred             HhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          199 SLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       199 ~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      |+.....    .++| +|.+..++++.+...||
T Consensus       282 Na~~~gl----~~~I-~~~~~D~~~~~~~~~fD  309 (393)
T 3k0b_A          282 NAVEAGL----GDLI-TFRQLQVADFQTEDEYG  309 (393)
T ss_dssp             HHHHTTC----TTCS-EEEECCGGGCCCCCCSC
T ss_pred             HHHHcCC----CCce-EEEECChHhCCCCCCCC
Confidence            9855211    1234 89999999988766777

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.92  E-value=0.0013  Score=59.45  Aligned_cols=67  Identities=9%  Similarity=-0.135  Sum_probs=50.2

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||.|-++..++... -.+|.++|.++.|++.++++++...      -. .++....+..=.|...||
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g------~~-~~~~v~D~~~~~p~~~~D  200 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLN------VP-HRTNVADLLEDRLDEPAD  200 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTT------CC-EEEEECCTTTSCCCSCCS
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcC------CC-ceEEEeeecccCCCCCcc
Confidence            4589999999999997744332 3699999999999999999985521      11 256666666555777887

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.89  E-value=0.00094  Score=61.29  Aligned_cols=70  Identities=14%  Similarity=0.008  Sum_probs=53.8

Q ss_pred             cceeeeccCCccccchHHHHhhcc---------------------------------------CeeEEecCcHHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---------------------------------------NEVDLLEPVSHFLDAAR  197 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---------------------------------------~~VDLVEPv~~Fle~Ar  197 (232)
                      +..++||.+||+|.+.........                                       .+|..+|.++.+++.|+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            346899999999999988544322                                       36999999999999999


Q ss_pred             HHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          198 ESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       198 e~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +|+.....    .+.| +|.+..++++.+...||
T Consensus       275 ~Na~~~gl----~~~i-~~~~~D~~~l~~~~~~D  303 (385)
T 3ldu_A          275 ENAEIAGV----DEYI-EFNVGDATQFKSEDEFG  303 (385)
T ss_dssp             HHHHHHTC----GGGE-EEEECCGGGCCCSCBSC
T ss_pred             HHHHHcCC----CCce-EEEECChhhcCcCCCCc
Confidence            99754211    1233 89999999988777787

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.81  E-value=0.0011  Score=61.15  Aligned_cols=61  Identities=16%  Similarity=-0.026  Sum_probs=46.5

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ..++||+|||+|..|.+++...- .+|.++|.++.+++.+++++....      -.+ ++++....++.
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g------~~~-~~~~~D~~~~~  308 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLG------MKA-TVKQGDGRYPS  308 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTT------CCC-EEEECCTTCTH
T ss_pred             cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcC------CCe-EEEeCchhhch
Confidence            46899999999999988554432 599999999999999999875421      123 67777776654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.78  E-value=0.0012  Score=62.42  Aligned_cols=45  Identities=13%  Similarity=-0.006  Sum_probs=38.3

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+|||+|||+|..|..+...+-  .+|.+||.++.+++.+++++..
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r  152 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER  152 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            46899999999999988554432  4899999999999999999855

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=96.76  E-value=0.0015  Score=58.58  Aligned_cols=80  Identities=13%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHhcCCCCCcCCCcceeeeccCCcccc--chHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCC
Q 026812          136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMH  211 (232)
Q Consensus       136 ~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGR--VTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~  211 (232)
                      ..++.||.........   .....++||+|||+|+  .+..++..++  .+|..||.++.|++.|++.+...+     ..
T Consensus        60 ~~nr~fl~rav~~l~~---~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-----~~  131 (277)
T 3giw_A           60 RANRDWMNRAVAHLAK---EAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-----EG  131 (277)
T ss_dssp             HHHHHHHHHHHHHHHH---TSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-----SS
T ss_pred             HHHHHHHHHHHHHhcc---ccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-----CC
Confidence            3568888875431110   0123589999999843  3434444333  699999999999999999986532     12


Q ss_pred             CcceEEEecCCCc
Q 026812          212 KATNFFCVPLQVI  224 (232)
Q Consensus       212 rv~n~~~vgLQdF  224 (232)
                      + .+|.+..++++
T Consensus       132 ~-~~~v~aD~~~~  143 (277)
T 3giw_A          132 R-TAYVEADMLDP  143 (277)
T ss_dssp             E-EEEEECCTTCH
T ss_pred             c-EEEEEecccCh
Confidence            3 38899999886

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.75  E-value=0.00024  Score=63.71  Aligned_cols=58  Identities=10%  Similarity=-0.089  Sum_probs=45.8

Q ss_pred             eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++..++...  ..+|..||.++.+++.|              .++ ++++..+.++.+..+||
T Consensus        41 ~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------~~~-~~~~~D~~~~~~~~~fD  100 (421)
T 2ih2_A           41 GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------PWA-EGILADFLLWEPGEAFD  100 (421)
T ss_dssp             CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------TTE-EEEESCGGGCCCSSCEE
T ss_pred             CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------CCC-cEEeCChhhcCccCCCC
Confidence            489999999999998754432  36999999999998765              122 78888888887766776

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.74  E-value=0.0012  Score=59.62  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|.-.+++.|-..-...|..+....     .....+||=+|.|-|-+.+.+|... ..+||+||.++..++.+++++.
T Consensus        54 ~LDg~~q~te~De~~YhE~l~h~~l~~-----~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp  128 (294)
T 3o4f_A           54 ALDGVVQTTERDEFIYHEMMTHVPLLA-----HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP  128 (294)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHHH-----SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             EECCchhhccccHHHHHHHHHHHHHhh-----CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence            577777788888554455555543211     1234689999999999999977653 5899999999999999999874


Q ss_pred             CCCCCCCCCCCcceEEEecCCCccC--CCCCC
Q 026812          202 PENHMAPDMHKATNFFCVPLQVITN--IIQYH  231 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF~P--e~~YD  231 (232)
                      ......-+..|+ +++...--.|--  .++||
T Consensus       129 ~~~~~~~~dpRv-~v~~~Dg~~~l~~~~~~yD  159 (294)
T 3o4f_A          129 NHNAGSYDDPRF-KLVIDDGVNFVNQTSQTFD  159 (294)
T ss_dssp             HHHTTGGGCTTE-EEEESCTTTTTSCSSCCEE
T ss_pred             cccccccCCCcE-EEEechHHHHHhhccccCC
Confidence            311101123565 555555444542  22565

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.69  E-value=0.0022  Score=59.09  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=53.0

Q ss_pred             ceeeeccCCccccchHHHHhhccC---------------------------------------eeEEecCcHHHHHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFN---------------------------------------EVDLLEPVSHFLDAARE  198 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~---------------------------------------~VDLVEPv~~Fle~Are  198 (232)
                      ...+||.+||+|.+.........+                                       +|..+|.++.+++.|++
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            467999999999999875443322                                       49999999999999999


Q ss_pred             HhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          199 SLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       199 ~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      |+.....    .+.| +|.+..+.++.+...||
T Consensus       275 Na~~~gl----~~~I-~~~~~D~~~l~~~~~fD  302 (384)
T 3ldg_A          275 NAREVGL----EDVV-KLKQMRLQDFKTNKING  302 (384)
T ss_dssp             HHHHTTC----TTTE-EEEECCGGGCCCCCCSC
T ss_pred             HHHHcCC----CCce-EEEECChHHCCccCCcC
Confidence            9855211    1234 88999999988766776

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.69  E-value=0.0002  Score=58.09  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=25.3

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH  191 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~  191 (232)
                      ..++||+|||+|.++..+    ..+|..||+++.
T Consensus        68 ~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~   97 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSI----RNPVHCFDLASL   97 (215)
T ss_dssp             TSCEEEETCTTCHHHHHC----CSCEEEEESSCS
T ss_pred             CCeEEEECCcCCHHHHHh----hccEEEEeCCCC
Confidence            358999999999999763    268999999886

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=96.66  E-value=0.00094  Score=59.17  Aligned_cols=40  Identities=13%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are  198 (232)
                      ..++||+|||+|..+..|+... --+|..+|+ +.+++.|++
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  229 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG  229 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc
Confidence            3689999999999998865443 248999999 999987765

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.64  E-value=0.0013  Score=58.46  Aligned_cols=68  Identities=7%  Similarity=0.008  Sum_probs=47.5

Q ss_pred             cceeeeccCCccccchHHHHhhcc------CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQY  230 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f------~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~Y  230 (232)
                      ...++||.|||+|.++..++...-      .+|..+|.++.+++.|+.++....      .. .++++...-+..+..+|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g------~~-~~i~~~D~l~~~~~~~f  202 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQR------QK-MTLLHQDGLANLLVDPV  202 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHT------CC-CEEEESCTTSCCCCCCE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCC------CC-ceEEECCCCCccccCCc
Confidence            346899999999999987655442      589999999999999998864310      12 26666654333333455


Q ss_pred             C
Q 026812          231 H  231 (232)
Q Consensus       231 D  231 (232)
                      |
T Consensus       203 D  203 (344)
T 2f8l_A          203 D  203 (344)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.59  E-value=0.00078  Score=53.89  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=27.1

Q ss_pred             ceeeeccCCccccchHHHHhhc---cCeeEEecCcH
Q 026812          158 HLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVS  190 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~  190 (232)
                      ..++||+|||+|.+|..++...   ..+|..||+++
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~   58 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI   58 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence            4689999999999998754443   25899999998

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.56  E-value=0.0011  Score=52.73  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=27.4

Q ss_pred             ceeeeccCCccccchHHHHhhcc----------CeeEEecCcHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF----------NEVDLLEPVSH  191 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f----------~~VDLVEPv~~  191 (232)
                      ..++||+|||+|.+|..++...-          .+|..||+++.
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            46899999999999987544432          68999999983

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.45  E-value=0.0021  Score=57.24  Aligned_cols=30  Identities=17%  Similarity=0.094  Sum_probs=24.9

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEP  188 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEP  188 (232)
                      +..+|||+|||+|..|.. |++. .+|..||.
T Consensus        82 ~g~~VLDlGcG~G~~s~~-la~~-~~V~gvD~  111 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYY-CGGL-KNVREVKG  111 (305)
T ss_dssp             CCEEEEEETCTTSHHHHH-HHTS-TTEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHH-HHhc-CCEEEEec
Confidence            347999999999999976 5665 68889988

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.42  E-value=0.00098  Score=61.97  Aligned_cols=45  Identities=13%  Similarity=0.071  Sum_probs=39.5

Q ss_pred             ceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||++||+|-++..++...  ..+|.+||.++..++.+++|+..
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~   99 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL   99 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            3689999999999999877642  47999999999999999999865

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=96.39  E-value=0.0022  Score=56.61  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=33.5

Q ss_pred             ceeeeccCCcccc----chHHHHhhcc------CeeEEecCcHHHHHHHHHHh
Q 026812          158 HLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       158 ~~rALDcGAGIGR----VTk~lLl~~f------~~VDLVEPv~~Fle~Are~l  200 (232)
                      ..+|||+|||+|.    ++.. |+..+      -+|.++|.++.+++.|++.+
T Consensus       106 ~~rIld~GCgTGee~ysiAi~-L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAIT-LADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHH-HHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHH-HHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            4699999999999    5543 33331      28999999999999999864

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.38  E-value=0.0065  Score=54.82  Aligned_cols=57  Identities=16%  Similarity=0.033  Sum_probs=47.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      ...+|||+||-|..|..||.. -.+|..+|.++.+++.|++ +..        .++ .+++.++.++.
T Consensus        23 gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~--------~rv-~lv~~~f~~l~   79 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL--------PGL-TVVQGNFRHLK   79 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC--------TTE-EEEESCGGGHH
T ss_pred             CCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc--------CCE-EEEECCcchHH
Confidence            358999999999999987766 5699999999999999999 744        344 78888777663

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=96.38  E-value=0.0031  Score=55.82  Aligned_cols=65  Identities=14%  Similarity=0.037  Sum_probs=40.7

Q ss_pred             cceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...++||+|||+|.++..++...- -++..+|. +.++.  ++.+...    ....+| ++.+..+.+..|  .||
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~----~~~~~v-~~~~~d~~~~~p--~~D  249 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAP----DVAGRW-KVVEGDFLREVP--HAD  249 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCG----GGTTSE-EEEECCTTTCCC--CCS
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--ccccccc----CCCCCe-EEEecCCCCCCC--CCc
Confidence            357999999999999998665432 36888898 44444  3322211    112344 777777754344  676

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.30  E-value=0.0033  Score=57.83  Aligned_cols=43  Identities=23%  Similarity=0.284  Sum_probs=37.7

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHh
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l  200 (232)
                      ...|||||+|+|-.|..||... ..+|.+||.++.|+..+++.+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            3689999999999999876543 579999999999999999876

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.22  E-value=0.0039  Score=57.27  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=38.4

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .++||+|||+|.+|..++... ..+|.+||.++..++.|++|+..
T Consensus        49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~   93 (378)
T 2dul_A           49 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML   93 (378)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence            589999999999999866653 35899999999999999999854

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=96.09  E-value=0.0026  Score=56.38  Aligned_cols=58  Identities=16%  Similarity=0.195  Sum_probs=39.9

Q ss_pred             eeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .++||+|||+|.++..|+...- -++.++|. +.+++.|++.           .+| ++.+..+.+  |...||
T Consensus       195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v-~~~~~d~~~--~~~~~D  253 (358)
T 1zg3_A          195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN-----------ENL-NFVGGDMFK--SIPSAD  253 (358)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC-----------SSE-EEEECCTTT--CCCCCS
T ss_pred             CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC-----------CCc-EEEeCccCC--CCCCce
Confidence            5899999999999998655431 36888899 7888766541           223 666666655  222466

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=96.09  E-value=0.012  Score=52.70  Aligned_cols=67  Identities=12%  Similarity=0.177  Sum_probs=44.1

Q ss_pred             cceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ...++||+|||+|.++..|+...- -++.+.|. +..++.|++++....     .++| ++..-.+-+ .|...||
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-----~~rv-~~~~gD~~~-~~~~~~D  246 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-----EEQI-DFQEGDFFK-DPLPEAD  246 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-------CCSE-EEEESCTTT-SCCCCCS
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-----cCce-eeecCcccc-CCCCCce
Confidence            345899999999999998655532 35666665 889999999875421     2565 666665532 1333555

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=96.04  E-value=0.0025  Score=56.91  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             cceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are  198 (232)
                      ...++||+|||+|.++..|+.... -++..+|. +.+++.|++
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~  250 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP  250 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh
Confidence            346899999999999988654432 35667799 999987765

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.03  E-value=0.0055  Score=56.51  Aligned_cols=46  Identities=24%  Similarity=0.297  Sum_probs=38.8

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +...++||||++|-.|..++.+.+   .+|-++||++...+.++++++.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            456899999999999987663443   6999999999999999998854

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.03  E-value=0.0059  Score=53.48  Aligned_cols=44  Identities=25%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ...|||++||+|.++.. +++...++..||.++.+++.|++++..
T Consensus       236 ~~~vlD~f~GsGt~~~~-a~~~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          236 GDVVLDPFAGTGTTLIA-AARWGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             TCEEEETTCTTTHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHH-HHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence            46899999999999987 556677999999999999999988744

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=95.90  E-value=0.003  Score=51.90  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=28.0

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVS  190 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~  190 (232)
                      +..+|||+|||+|..|.. |++...+|..||.++
T Consensus        25 ~g~~VLDlG~G~G~~s~~-la~~~~~V~gvD~~~   57 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQV-LNSLARKIISIDLQE   57 (191)
T ss_dssp             TTCEEEEESCTTCHHHHH-HTTTCSEEEEEESSC
T ss_pred             CCCEEEEEeecCCHHHHH-HHHcCCcEEEEeccc
Confidence            346899999999999976 566678999999986

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.82  E-value=0.0062  Score=60.21  Aligned_cols=70  Identities=11%  Similarity=0.014  Sum_probs=49.8

Q ss_pred             CcceeeeccCCccccchHHHH---hhccC--eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLL---IRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQY  230 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lL---l~~f~--~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~Y  230 (232)
                      .+...|||+|||.|-...--|   +....  +|-+||-++ +...|++......+    .++| ++++..++++.++++.
T Consensus       356 ~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~----~dkV-tVI~gd~eev~LPEKV  429 (637)
T 4gqb_A          356 TNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEW----GSQV-TVVSSDMREWVAPEKA  429 (637)
T ss_dssp             TCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTT----GGGE-EEEESCTTTCCCSSCE
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccC----CCeE-EEEeCcceeccCCccc
Confidence            345689999999998843211   22122  689999997 67778776655444    2555 9999999999987765


Q ss_pred             C
Q 026812          231 H  231 (232)
Q Consensus       231 D  231 (232)
                      |
T Consensus       430 D  430 (637)
T 4gqb_A          430 D  430 (637)
T ss_dssp             E
T ss_pred             C
Confidence            5

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=95.80  E-value=0.0049  Score=55.40  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=39.2

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      ...++||+|||+|.++..|+... --+|..+|. +.+++.|++.           .+| ++.+..+.+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v-~~~~~d~~~  257 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----------SGV-EHLGGDMFD  257 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----------TTE-EEEECCTTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----------CCC-EEEecCCCC
Confidence            45689999999999999866543 247899999 8888876542           233 666666654

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=95.60  E-value=0.0075  Score=54.16  Aligned_cols=41  Identities=17%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             cceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are  198 (232)
                      ...++||+|||+|.++..|+...- -++..+|. +.+++.|++
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  242 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ  242 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh
Confidence            346899999999999998665432 47899999 888887654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=95.52  E-value=0.039  Score=47.00  Aligned_cols=79  Identities=16%  Similarity=0.156  Sum_probs=53.1

Q ss_pred             ccccchh-hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCC
Q 026812          130 VNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMA  207 (232)
Q Consensus       130 vs~~Di~-gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~  207 (232)
                      ++.+.+. ....||.....         +..++|++|+|   .|--+|++. -.+|..||.++.+.+.|+++++..... 
T Consensus        11 ~P~~~v~~~~~~~L~~~l~---------~a~~VLEiGtG---ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~-   77 (202)
T 3cvo_A           11 RPELTMPPAEAEALRMAYE---------EAEVILEYGSG---GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA-   77 (202)
T ss_dssp             CCCCCSCHHHHHHHHHHHH---------HCSEEEEESCS---HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC-
T ss_pred             CCCccCCHHHHHHHHHHhh---------CCCEEEEECch---HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-
Confidence            3334443 45778876433         23589999997   355567776 489999999999999999999764220 


Q ss_pred             CCCCCcceEEEecCCC
Q 026812          208 PDMHKATNFFCVPLQV  223 (232)
Q Consensus       208 ~~~~rv~n~~~vgLQd  223 (232)
                       ..++| +++...+.+
T Consensus        78 -~~~~I-~~~~gda~~   91 (202)
T 3cvo_A           78 -EGTEV-NIVWTDIGP   91 (202)
T ss_dssp             -TTCEE-EEEECCCSS
T ss_pred             -CCCce-EEEEeCchh
Confidence             02455 677666443

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.09  E-value=0.027  Score=52.02  Aligned_cols=70  Identities=9%  Similarity=-0.020  Sum_probs=46.9

Q ss_pred             ceeeeccCCccccchHHHHhhc--------------cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY--------------FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQV  223 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~--------------f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQd  223 (232)
                      ..++||.|||+|.+...+...+              ..+|..+|.++.+++.|+.++.....   .... .+|++...-.
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~---~~~~-~~i~~gD~l~  247 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI---GTDR-SPIVCEDSLE  247 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC---CSSC-CSEEECCTTT
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC---CcCC-CCEeeCCCCC
Confidence            4589999999999987754432              25799999999999999988643211   0001 2667766554


Q ss_pred             ccCCCCCC
Q 026812          224 ITNIIQYH  231 (232)
Q Consensus       224 F~Pe~~YD  231 (232)
                      ..+..+||
T Consensus       248 ~~~~~~fD  255 (445)
T 2okc_A          248 KEPSTLVD  255 (445)
T ss_dssp             SCCSSCEE
T ss_pred             CcccCCcC
Confidence            44333454

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=94.49  E-value=0.021  Score=53.35  Aligned_cols=73  Identities=18%  Similarity=0.113  Sum_probs=52.0

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +|.|..++++.|.. -...|-....  .    ..+..+||=+|.|-|-+.+.+|..-.++||+||.++..++.+++++..
T Consensus       178 ~LDG~~Q~te~D~~-Y~e~l~h~~l--~----~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~  250 (381)
T 3c6k_A          178 ILSGDVNLAESDLA-YTRAIMGSGK--E----DYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRK  250 (381)
T ss_dssp             EETTEEEEETTCHH-HHHHHTTTTC--C----CCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC
T ss_pred             EECCceeeeCChHH-HHHHHHHHHh--h----cCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchh
Confidence            55666666777732 1222221111  1    112468999999999999998877678999999999999999999854

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=94.43  E-value=0.017  Score=45.42  Aligned_cols=50  Identities=4%  Similarity=-0.019  Sum_probs=38.1

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC----CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN----IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P----e~~YD  231 (232)
                      +..++||+|||.              |. ||+++.|++.|++.+..         . .++.+..++++.+    +..||
T Consensus        12 ~g~~vL~~~~g~--------------v~-vD~s~~ml~~a~~~~~~---------~-~~~~~~d~~~~~~~~~~~~~fD   65 (176)
T 2ld4_A           12 AGQFVAVVWDKS--------------SP-VEALKGLVDKLQALTGN---------E-GRVSVENIKQLLQSAHKESSFD   65 (176)
T ss_dssp             TTSEEEEEECTT--------------SC-HHHHHHHHHHHHHHTTT---------T-SEEEEEEGGGGGGGCCCSSCEE
T ss_pred             CCCEEEEecCCc--------------ee-eeCCHHHHHHHHHhccc---------C-cEEEEechhcCccccCCCCCEe
Confidence            446899999985              33 99999999999998632         2 3888888888754    44676

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=94.40  E-value=0.02  Score=47.54  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=28.0

Q ss_pred             eeeeccCCccc-cchHHHHhh-ccCeeEEecCcHHHHH
Q 026812          159 LVALDCGSGIG-RITKNLLIR-YFNEVDLLEPVSHFLD  194 (232)
Q Consensus       159 ~rALDcGAGIG-RVTk~lLl~-~f~~VDLVEPv~~Fle  194 (232)
                      .+|||+|||.| ||+.. |+. ..-.|++||.++.-++
T Consensus        37 ~rVlEVG~G~g~~vA~~-La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           37 TRVVEVGAGRFLYVSDY-IRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             SEEEEETCTTCCHHHHH-HHHHSCCEEEEECSSCSSTT
T ss_pred             CcEEEEccCCChHHHHH-HHHhCCCeEEEEECCccccc
Confidence            58999999999 89987 553 5457999999876544

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=93.78  E-value=0.099  Score=47.96  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=52.3

Q ss_pred             CCCcccccccccCCCCCcccCHHHHHHHHhccCCchhhhhhhhhh-hhhhccc-CCccchhcc------ccCCCcccccc
Q 026812           63 HKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYR-EGISYWE-GVEASVDGV------LGGFGNVNEVD  134 (232)
Q Consensus        63 ~~~~~~~~~~G~ds~g~~~~s~~emWk~~~~~d~~~~~~~~~~Y~-~a~~YWe-~veaTvdGM------LGGf~~vs~~D  134 (232)
                      |.-++.+.-+|+---|-.-.+..|+||++|+.     -.+.+++. +-...+| +..++.+.+      .|+|.  |+  
T Consensus         8 ~~~~~~~~~~~~~rg~~~g~tlG~~wK~~LN~-----l~k~~F~~Yk~~gi~Evdr~~ar~~l~~g~~~~g~y~--SR--   78 (321)
T 3lkz_A            8 HHHSSGLVPRGSHMGGAKGRTLGEVWKERLNQ-----MTKEEFTRYRKEAIIEVDRSAAKHARKEGNVTGGHPV--SR--   78 (321)
T ss_dssp             ------------------CCSHHHHHHHHHTT-----SCHHHHHHHTTTTCEEECCHHHHHHHHHTCCSSCCCS--ST--
T ss_pred             cccccCcccccCcCCCCCCCchHHHHHHHHhc-----cCHHHHHHHhhcCceeechHHHHHHHhcCcCcCCCcc--ch--
Confidence            33455566666665566788999999999987     55555533 2223333 122222211      12222  11  


Q ss_pred             hhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcH
Q 026812          135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVS  190 (232)
Q Consensus       135 i~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~  190 (232)
                        ++-+ |..+.....    ..+..+|||+||++|--|...+.+. ...|-+||.-.
T Consensus        79 --~~~K-L~ei~~~~~----l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~  128 (321)
T 3lkz_A           79 --GTAK-LRWLVERRF----LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG  128 (321)
T ss_dssp             --HHHH-HHHHHHTTS----CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred             --HHHH-HHHHHHhcC----CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence              1222 223322221    1244699999999999998665554 46788887654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=93.17  E-value=0.057  Score=54.43  Aligned_cols=64  Identities=14%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             cceeeeccCCccccchHHHH-h-hccC------------eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCC
Q 026812          157 QHLVALDCGSGIGRITKNLL-I-RYFN------------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ  222 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lL-l-~~f~------------~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQ  222 (232)
                      +...|||+|||.|-++.-.| + +.+.            +|-+||-++.....++.... ..+    .++| ++++..++
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~----~d~V-tVI~gd~e  482 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW----KRRV-TIIESDMR  482 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT----TTCS-EEEESCGG
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC----CCeE-EEEeCchh
Confidence            35689999999999974211 1 1123            99999999976665554432 122    2455 99999999


Q ss_pred             CccC
Q 026812          223 VITN  226 (232)
Q Consensus       223 dF~P  226 (232)
                      ++..
T Consensus       483 ev~l  486 (745)
T 3ua3_A          483 SLPG  486 (745)
T ss_dssp             GHHH
T ss_pred             hccc
Confidence            9986

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=93.12  E-value=0.12  Score=51.12  Aligned_cols=65  Identities=14%  Similarity=0.015  Sum_probs=48.5

Q ss_pred             ceeeeccCCccccchHHHHhhcc-------------------------------------------CeeEEecCcHHHHH
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-------------------------------------------NEVDLLEPVSHFLD  194 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-------------------------------------------~~VDLVEPv~~Fle  194 (232)
                      ...+||.+||+|.+.........                                           .+|..+|.++.+++
T Consensus       191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~  270 (703)
T 3v97_A          191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ  270 (703)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred             CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence            45799999999999877443210                                           37999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          195 AARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       195 ~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      .|++|+.....    .+.| +|.+..+.++.+.
T Consensus       271 ~A~~N~~~agv----~~~i-~~~~~D~~~~~~~  298 (703)
T 3v97_A          271 RARTNARLAGI----GELI-TFEVKDVAQLTNP  298 (703)
T ss_dssp             HHHHHHHHTTC----GGGE-EEEECCGGGCCCS
T ss_pred             HHHHHHHHcCC----CCce-EEEECChhhCccc
Confidence            99999855211    1223 8899999888654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=92.85  E-value=0.039  Score=52.17  Aligned_cols=52  Identities=12%  Similarity=0.112  Sum_probs=39.5

Q ss_pred             ceeeeccCCc------cccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSG------IGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAG------IGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..+|||+|||      +|-.|..++..+|  .+|..||.++.|.      . .       ..+| +|++..+++.
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~-~-------~~rI-~fv~GDa~dl  276 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V-D-------ELRI-RTIQGDQNDA  276 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G-C-------BTTE-EEEECCTTCH
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h-c-------CCCc-EEEEeccccc
Confidence            4689999999      8888888776654  6999999999872      1 1       1344 7888888774

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.94  E-value=0.17  Score=43.28  Aligned_cols=45  Identities=16%  Similarity=0.113  Sum_probs=38.6

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ....|||..||+|..+.. ..++..++-.||.++.+++.|++++..
T Consensus       212 ~~~~vlD~f~GsGtt~~~-a~~~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIV-AKKLGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             TTCEEEESSCTTCHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCEEEECCCCCCHHHHH-HHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence            346899999999999976 456678999999999999999998744

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=91.45  E-value=0.32  Score=43.63  Aligned_cols=33  Identities=15%  Similarity=0.011  Sum_probs=23.7

Q ss_pred             cceeeeccCCccccchHHHHhh-ccCeeEEecCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPV  189 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv  189 (232)
                      +..+|||+|||+|-.|...+.+ ....|..++..
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG  107 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG  107 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEe
Confidence            3468999999999999765544 24566666655

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=90.60  E-value=0.21  Score=44.85  Aligned_cols=44  Identities=16%  Similarity=0.142  Sum_probs=39.4

Q ss_pred             eeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .++||+-||+|-++..|....  |+.|-+||.++..++..+.|+..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~   48 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH   48 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc
Confidence            579999999999999987776  67999999999999999999743

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=90.48  E-value=0.41  Score=43.05  Aligned_cols=113  Identities=18%  Similarity=0.165  Sum_probs=47.7

Q ss_pred             cccccccccCCC-CCcccCHHHHHHHHhccCCchhhhhhhhhh-hhhhccc-CCccchhccccCCCcccccchhhHHHH-
Q 026812           66 SSAMEVSGLDSD-GKEFKNAEEMWREQIGEDGEQQEKKTQWYR-EGISYWE-GVEASVDGVLGGFGNVNEVDIKGSEAF-  141 (232)
Q Consensus        66 ~~~~~~~G~ds~-g~~~~s~~emWk~~~~~d~~~~~~~~~~Y~-~a~~YWe-~veaTvdGMLGGf~~vs~~Di~gS~~F-  141 (232)
                      ++.+.-+|+--- |-.-.++-+.||++|..     -.+.++.. +....|| +...+.+..=.|-  . . ..-.||.- 
T Consensus         7 ~~~~~~~~~~~g~~~~~~tlg~~wk~~ln~-----l~k~~f~~y~~~~i~e~~r~~ar~~l~~~~--~-~-g~YrSRAAf   77 (282)
T 3gcz_A            7 SSGLVPRGSHMGGTGSGMTPGEAWKKQLNK-----LGKTQFEQYKRSCILEVDRTHARDSLENGI--Q-N-GIAVSRGSA   77 (282)
T ss_dssp             -----------------CCHHHHHHHHHHH-----CCHHHHHHHHTTTCEEECCHHHHHHHHHTC--C-S-SBCSSTHHH
T ss_pred             cCCcccccccCCCCCCCCcHHHHHHHHHHh-----hhHHHHHhhhhhceeeccHHHHHHHHhcCC--c-C-CCEecHHHH
Confidence            444444554444 45567889999999986     43444422 2223333 1112221111110  0 0 01122221 


Q ss_pred             -HHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHH
Q 026812          142 -LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSH  191 (232)
Q Consensus       142 -L~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~  191 (232)
                       |..|....+    ..+..+|||+|||+|--+...+.+. ...|..|+....
T Consensus        78 KL~ei~eK~~----Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           78 KLRWMEERGY----VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             HHHHHHHTTS----CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             HHHHHHHhcC----CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence             222222111    1234589999999999997655332 456666666543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=90.07  E-value=0.57  Score=42.51  Aligned_cols=34  Identities=18%  Similarity=-0.026  Sum_probs=24.6

Q ss_pred             cceeeeccCCccccchHHHHhh-ccCeeEEecCcH
Q 026812          157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVS  190 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~-~f~~VDLVEPv~  190 (232)
                      +..+|||+||++|--|..++.. ....|+.|+...
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            4579999999999999764433 245677776643

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=89.94  E-value=0.13  Score=45.82  Aligned_cols=32  Identities=9%  Similarity=0.154  Sum_probs=23.6

Q ss_pred             cceeeeccCC------ccccchHHHHhhcc---CeeEEecCcHH
Q 026812          157 QHLVALDCGS------GIGRITKNLLIRYF---NEVDLLEPVSH  191 (232)
Q Consensus       157 ~~~rALDcGA------GIGRVTk~lLl~~f---~~VDLVEPv~~  191 (232)
                      +..+|||+||      |+|.   .++++.+   .+|..||.++.
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs---~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT---AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH---HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCCCCCcHH---HHHHHHcCCCCEEEEEECCCC
Confidence            4468999999      5576   3445543   58999999987

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=88.31  E-value=0.76  Score=41.12  Aligned_cols=97  Identities=14%  Similarity=0.109  Sum_probs=50.6

Q ss_pred             cccCHHHHHHHHhccCCchhhhhhhhhh-hhhhccc-CCccchhccccCCCcccccchhhHHHH--HHHHhcCCCCCcCC
Q 026812           80 EFKNAEEMWREQIGEDGEQQEKKTQWYR-EGISYWE-GVEASVDGVLGGFGNVNEVDIKGSEAF--LQMLLSDRFPNARN  155 (232)
Q Consensus        80 ~~~s~~emWk~~~~~d~~~~~~~~~~Y~-~a~~YWe-~veaTvdGMLGGf~~vs~~Di~gS~~F--L~~L~~~~~~~~~~  155 (232)
                      .-.+..|+||++|+.     -.+.+++. +-...+| +..++.+.+--|-  .+  +.-.||..  |..+.....    .
T Consensus        10 ~g~tlG~~wK~~LN~-----l~k~~F~~Yk~~gi~Evdr~~ar~~l~~g~--~~--g~yrSRa~~KL~ei~ek~~----l   76 (267)
T 3p8z_A           10 QGETLGEKWKKKLNQ-----LSRKEFDLYKKSGITEVDRTEAKEGLKRGE--TT--HHAVSRGSAKLQWFVERNM----V   76 (267)
T ss_dssp             -CCCHHHHHHHHHHH-----SCHHHHHHHHTTTCEEEECHHHHHHHHTTC--CS--SCCSSTHHHHHHHHHHTTS----S
T ss_pred             CCCcHHHHHHHHHhh-----cCHHHHHHHhhcCceEeccHHHHHHHhcCC--cC--CCccchHHHHHHHHHHhcC----C
Confidence            356899999999986     44555532 2223333 1121222111111  11  11222222  223322111    1


Q ss_pred             CcceeeeccCCccccchHHHHhhc-cCeeEEecCc
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPV  189 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv  189 (232)
                      .+..+|||+||++|--|...+.+. ..+|-+||.-
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG  111 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKG  111 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecC
Confidence            344699999999999998665554 4677777754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=88.03  E-value=0.27  Score=45.80  Aligned_cols=61  Identities=11%  Similarity=0.004  Sum_probs=41.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC-CCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII-QYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~-~YD  231 (232)
                      +..+|||+||.+|--|.. |.+....|.+||+.+ |-..+.    .       ..+| +++.....+|.|+. .+|
T Consensus       211 ~G~~vlDLGAaPGGWT~~-l~~rg~~V~aVD~~~-l~~~l~----~-------~~~V-~~~~~d~~~~~~~~~~~D  272 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQ-LVKRNMWVYSVDNGP-MAQSLM----D-------TGQV-TWLREDGFKFRPTRSNIS  272 (375)
T ss_dssp             TTCEEEEETCTTCHHHHH-HHHTTCEEEEECSSC-CCHHHH----T-------TTCE-EEECSCTTTCCCCSSCEE
T ss_pred             CCCEEEEeCcCCCHHHHH-HHHCCCEEEEEEhhh-cChhhc----c-------CCCe-EEEeCccccccCCCCCcC
Confidence            457999999999999965 667677999999763 222211    1       1344 66677777777754 454

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=85.76  E-value=0.71  Score=42.21  Aligned_cols=56  Identities=14%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      .++||+=||+|-++..|....|+.|-+||.++..++..+.|+..           ..+++..+.++.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~-----------~~~~~~DI~~~~   58 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPR-----------SLHVQEDVSLLN   58 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTT-----------SEEECCCGGGCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCC-----------CceEecChhhcC
Confidence            47999999999999998888899999999999999999998743           145555655554

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=85.22  E-value=1  Score=41.82  Aligned_cols=45  Identities=22%  Similarity=0.320  Sum_probs=36.6

Q ss_pred             ceeeeccCCccccchHHHHhhc------cC--eeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~------f~--~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ...++|+|||.|+....+|.-.      +.  ++.+||+|+.+.+.=++.|..
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  133 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  133 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence            4689999999999999987432      23  799999999999877777754

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=85.20  E-value=1.3  Score=40.97  Aligned_cols=57  Identities=11%  Similarity=0.167  Sum_probs=44.9

Q ss_pred             ceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ...++||.+|-|--|..||..+.  .+|-.+|.++..++.|+ .+..        .++ .+++.++.++
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~--------~Rv-~lv~~nF~~l  116 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDD--------PRF-SIIHGPFSAL  116 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCC--------TTE-EEEESCGGGH
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcC--------CcE-EEEeCCHHHH
Confidence            45899999999999998776653  48999999999999984 4521        455 7788777765

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=84.35  E-value=1.8  Score=38.81  Aligned_cols=82  Identities=21%  Similarity=0.246  Sum_probs=43.4

Q ss_pred             ccCHHHHHHHHhccCCchhhhhhhhhh-hhhhccc-CCccchh----c--cccCCCcccccchhhHHHHHHHHhcCCCCC
Q 026812           81 FKNAEEMWREQIGEDGEQQEKKTQWYR-EGISYWE-GVEASVD----G--VLGGFGNVNEVDIKGSEAFLQMLLSDRFPN  152 (232)
Q Consensus        81 ~~s~~emWk~~~~~d~~~~~~~~~~Y~-~a~~YWe-~veaTvd----G--MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~  152 (232)
                      -.+..|+||++|+.     -.+.+++. +-...|| +...+.+    |  -.|||..-       |..=|..|....+  
T Consensus         5 ~~tlg~~wk~~ln~-----~~k~~f~~y~~~~i~e~dr~~a~~~~~~g~~~~g~yRSR-------AayKL~EIdeK~l--   70 (269)
T 2px2_A            5 GRTLGEQWKEKLNA-----MGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSR-------GTAKLRWLVERRF--   70 (269)
T ss_dssp             -CCHHHHHHHHHHT-----SCHHHHHHHHTTTCEEECGGGTTC-------CCSCCSST-------HHHHHHHHHHTTS--
T ss_pred             cCchHHHHHHHHhc-----cCHHHHHHHhhcCceEechHHHHHHHhcCCCcCCCcccH-------HHHHHHHHHHcCC--
Confidence            45788999999986     45555532 2233444 1222221    1  12444321       1112333333222  


Q ss_pred             cCCCcceeeeccCCccccchHHHHhhc
Q 026812          153 ARNNQHLVALDCGSGIGRITKNLLIRY  179 (232)
Q Consensus       153 ~~~~~~~rALDcGAGIGRVTk~lLl~~  179 (232)
                        ..+..+|||+||++|-=|.. .++.
T Consensus        71 --ikpg~~VVDLGaAPGGWSQv-Aa~~   94 (269)
T 2px2_A           71 --VQPIGKVVDLGCGRGGWSYY-AATM   94 (269)
T ss_dssp             --CCCCEEEEEETCTTSHHHHH-HTTS
T ss_pred             --CCCCCEEEEcCCCCCHHHHH-Hhhh
Confidence              13457999999999999965 4444

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=84.15  E-value=0.92  Score=40.60  Aligned_cols=45  Identities=16%  Similarity=-0.075  Sum_probs=40.8

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+-||+|-++..|....|+.|-+||.++..++..+.|+..
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~   55 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE   55 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC
Confidence            368999999999999998887899999999999999999999754

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=82.03  E-value=1.6  Score=41.72  Aligned_cols=45  Identities=16%  Similarity=-0.113  Sum_probs=36.0

Q ss_pred             ceeeeccCCccccchHHHHhhc-------------------cCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-------------------FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-------------------f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+|||.+||+|.+...++..+                   ...|..+|.++.+++.|+.++..
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l  233 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  233 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence            4589999999999887654332                   14799999999999999988643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=82.03  E-value=2.2  Score=40.93  Aligned_cols=46  Identities=17%  Similarity=-0.021  Sum_probs=37.2

Q ss_pred             cceeeeccCCccccchHHHHhhc----cCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~----f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ...+|||.+||+|.+...++..+    -..|..+|.++..+..|+.++..
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l  270 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL  270 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH
Confidence            45689999999999887654442    35899999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	2e-33
d2ex4a1	222	c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (	2e-18

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score =  118 bits (297), Expect = 2e-33
 Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 10/133 (7%)

Query: 62  KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVD 121
           K   S  + +SG D++GK +++ +EMW+ ++  D    + +  WY + + YW  V A+V 
Sbjct: 8   KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVS 65

Query: 122 GVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181
           GVLGG  +V++VDI+GS  F+  L               ALDCG+GIGRITKNLL + + 
Sbjct: 66  GVLGGMDHVHDVDIEGSRNFIASLPGHGTSR--------ALDCGAGIGRITKNLLTKLYA 117

Query: 182 EVDLLEPVSHFLD 194
             DLLEPV H L+
Sbjct: 118 TTDLLEPVKHMLE 130

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (191), Expect = 2e-18
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 100 EKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHL 159
           E + Q+Y +  +YW+ +  +VDG+LGG+G+++ +DI  S  FLQ  L +           
Sbjct: 6   EDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGT---S 62

Query: 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219
            ALDCG+GIGRITK LL+  F EVD+++    FL  A+  L  E     +          
Sbjct: 63  CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT 122

Query: 220 PLQVITNIIQYH 231
           P     ++I   
Sbjct: 123 PEPDSYDVIWIQ 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	100.0
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.85
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.08
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.89
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.88
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.83
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.81
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.77
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.76
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.74
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.71
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.71
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.66
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.53
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.48
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.4
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.39
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.38
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.37
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.34
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.29
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.25
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.23
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.19
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.18
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.14
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.13
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.13
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.13
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.1
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.03
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.03
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.0
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.99
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.94
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	97.91
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.84
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.83
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.8
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.76
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.75
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.73
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.72
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.7
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.69
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.66
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.66
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.66
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.6
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.58
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.56
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.46
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.46
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.45
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.41
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.38
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.31
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.3
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.29
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.26
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.21
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.19
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.17
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.17
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.13
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.1
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.04
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.04
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	96.9
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.77
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.73
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.71
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.61
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	96.54
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.19
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.02
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.82
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.78
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.68
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	95.48
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.23
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.02
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	94.41
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	93.81
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.72
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.53
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	91.53
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	90.86
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	88.91
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	88.52
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	86.75
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	85.85
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	85.12
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	83.42
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	81.27

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=1.9e-37  Score=268.11  Aligned_cols=152  Identities=39%  Similarity=0.750  Sum_probs=133.3

Q ss_pred             CCCCcccccccccCCCCCcccCHHHHHHHHhccCCchhhhhhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHH
Q 026812           62 KHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAF  141 (232)
Q Consensus        62 ~~~~~~~~~~~G~ds~g~~~~s~~emWk~~~~~d~~~~~~~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~F  141 (232)
                      +..++.++.++|.|++|++|+|.++||++++..+.+  ....+||.++.+||+++++|+|||||||+++|++|+.+|+.|
T Consensus         8 ~~~~~~~~~~~g~d~~g~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~~yW~~~~~t~~~mlgg~~~~~~~d~~~s~~f   85 (254)
T d1xtpa_           8 KEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLY--DPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNF   85 (254)
T ss_dssp             -----CCCCCCEEETTSCEESCHHHHHHHHSCSCTT--CTTTCHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHH
T ss_pred             cccccccccccccCCCCCEeccHHHHHHHHhccccc--ccchhhhhchhhhhhcCchhcccccCCccccchhhHHHHHHH
Confidence            455677999999999999999999999999987655  456689999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC
Q 026812          142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL  221 (232)
Q Consensus       142 L~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL  221 (232)
                      |+.+..        ....+|||||||+||+|+.||.+.|.+|++|||++.|++.|++++..        .++.+|++.++
T Consensus        86 l~~l~~--------~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------~~~~~~~~~d~  149 (254)
T d1xtpa_          86 IASLPG--------HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------MPVGKFILASM  149 (254)
T ss_dssp             HHTSTT--------CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------SSEEEEEESCG
T ss_pred             HhhCCC--------CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------cccceeEEccc
Confidence            998765        23468999999999999999999999999999999999999998755        34569999999


Q ss_pred             CCccCCC-CCC
Q 026812          222 QVITNII-QYH  231 (232)
Q Consensus       222 QdF~Pe~-~YD  231 (232)
                      |+|.++. .||
T Consensus       150 ~~~~~~~~~fD  160 (254)
T d1xtpa_         150 ETATLPPNTYD  160 (254)
T ss_dssp             GGCCCCSSCEE
T ss_pred             cccccCCCccc
Confidence            9999764 787

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-22  Score=167.25  Aligned_cols=122  Identities=39%  Similarity=0.750  Sum_probs=101.6

Q ss_pred             hhhhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc
Q 026812          101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF  180 (232)
Q Consensus       101 ~~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f  180 (232)
                      ...+||.++.+||++++++.|||||||++++++|+..|+.||..+......   .....++||+|||+|+.+..||.+.+
T Consensus         7 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~   83 (222)
T d2ex4a1           7 DEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPN---KTGTSCALDCGAGIGRITKRLLLPLF   83 (222)
T ss_dssp             CHHHHHHHHHHHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHGGGC-------CCCCSEEEEETCTTTHHHHHTTTTTC
T ss_pred             hHHHHHHHHHHHHhCCCccccccccCccccchhhHHHHHHHHHHHHHhccC---CCCCCEEEEeccCCCHhhHHHHHhcC
Confidence            356899999999999999999999999999999999999999987654322   23456899999999999999888888


Q ss_pred             CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       181 ~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      .+|+.||+++.|++.|++++....      ....+|+|..++++.++ ..||
T Consensus        84 ~~v~~vD~s~~~l~~ak~~~~~~~------~~~~~f~~~d~~~~~~~~~~fD  129 (222)
T d2ex4a1          84 REVDMVDITEDFLVQAKTYLGEEG------KRVRNYFCCGLQDFTPEPDSYD  129 (222)
T ss_dssp             SEEEEEESCHHHHHHHHHHTGGGG------GGEEEEEECCGGGCCCCSSCEE
T ss_pred             CEEEEeecCHHHhhcccccccccc------cccccccccccccccccccccc
Confidence            999999999999999999875421      12338999999999864 4776

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=3.2e-11  Score=99.06  Aligned_cols=83  Identities=19%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       137 gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      ....|+..+.....    ..+..++||+|||+|+.|.. |++.+.+|+.||+++.|++.|++++...      ..++ ++
T Consensus        25 ~~~~~~~~~~~~~~----~~~~~~iLDiGcGtG~~~~~-l~~~~~~v~gvD~s~~mi~~a~~~~~~~------~~~i-~~   92 (251)
T d1wzna1          25 AEIDFVEEIFKEDA----KREVRRVLDLACGTGIPTLE-LAERGYEVVGLDLHEEMLRVARRKAKER------NLKI-EF   92 (251)
T ss_dssp             HHHHHHHHHHHHTC----SSCCCEEEEETCTTCHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCC-EE
T ss_pred             HHHHHHHHHHHHhc----CCCCCEEEEeCCCCCccchh-hcccceEEEEEeeccccccccccccccc------cccc-hh
Confidence            34556766654221    13346899999999999987 5566669999999999999999987542      1234 89


Q ss_pred             EEecCCCccCCCCCC
Q 026812          217 FCVPLQVITNIIQYH  231 (232)
Q Consensus       217 ~~vgLQdF~Pe~~YD  231 (232)
                      ++..++++.++.+||
T Consensus        93 ~~~d~~~l~~~~~fD  107 (251)
T d1wzna1          93 LQGDVLEIAFKNEFD  107 (251)
T ss_dssp             EESCGGGCCCCSCEE
T ss_pred             eehhhhhcccccccc
Confidence            999999999888887

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.89  E-value=1.1e-09  Score=90.46  Aligned_cols=66  Identities=18%  Similarity=0.253  Sum_probs=54.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+||+|.. |++.+.+|..||+++.|++.|++.+...      ..++ +++|..+.+|.+.++||
T Consensus        38 ~~~vLDiGCG~G~~~~~-l~~~g~~v~GvD~S~~ml~~A~~~~~~~------~~~v-~~~~~d~~~~~~~~~fD  103 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTEN-LCPKFKNTWAVDLSQEMLSEAENKFRSQ------GLKP-RLACQDISNLNINRKFD  103 (246)
T ss_dssp             TTEEEEETCTTSTTHHH-HGGGSSEEEEECSCHHHHHHHHHHHHHT------TCCC-EEECCCGGGCCCSCCEE
T ss_pred             CCeEEEEeCcCCHHHHH-HHHhCCccEeeccchhhhhhcccccccc------Cccc-eeeccchhhhccccccc
Confidence            35899999999999987 5666779999999999999999876431      1234 88999999998877887

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.88  E-value=1.4e-09  Score=87.62  Aligned_cols=66  Identities=21%  Similarity=0.104  Sum_probs=53.7

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .+|||+|||+|+.|..| ++.+-+|+.||+++.+++.|+++......     .. ..+.+..+.++.|+.+||
T Consensus        32 grvLDiGcG~G~~~~~l-a~~g~~v~gvD~s~~~l~~a~~~~~~~~~-----~~-~~~~~~d~~~~~~~~~fD   97 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYL-AANGYDVTAWDKNPASMANLERIKAAEGL-----DN-LQTDLVDLNTLTFDGEYD   97 (198)
T ss_dssp             CEEEEETCTTSHHHHHH-HHTTCEEEEEESCHHHHHHHHHHHHHTTC-----TT-EEEEECCTTTCCCCCCEE
T ss_pred             CcEEEECCCCCHHHHHH-HHHhhhhccccCcHHHHHHHHHHhhhccc-----cc-hhhhheeccccccccccc
Confidence            48999999999999875 56666999999999999999987654211     22 377889999999988887

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.83  E-value=2.8e-09  Score=86.15  Aligned_cols=69  Identities=14%  Similarity=0.289  Sum_probs=54.0

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      ++..+|||+|||+|..|.. |++.+.+|+.||+++.|++.|++.+.....     .++ +|++...+++. |...||
T Consensus        14 ~~~~rVLDiGcG~G~~~~~-l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-----~~i-~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANA-FAPFVKKVVAFDLTEDILKVARAFIEGNGH-----QQV-EYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHH-HGGGSSEEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEECCC-CCCSCTTCEE
T ss_pred             CCcCEEEEecccCcHHHHH-HHHhCCEEEEEECCHHHHhhhhhccccccc-----ccc-cccccccccccccccccc
Confidence            3456999999999999987 567778999999999999999988754221     345 78999999876 445776

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.81  E-value=2.5e-09  Score=82.87  Aligned_cols=55  Identities=11%  Similarity=-0.170  Sum_probs=43.7

Q ss_pred             HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +.|+..|..        .+..||||+|||+||.+..|..+ .-+|+.||+|+.|++.|++....
T Consensus        10 ~~~~~~l~~--------~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_          10 QQYWSSLNV--------VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             HHHHHHHCC--------CTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCS
T ss_pred             HHHHHHcCC--------CCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhcc
Confidence            446666533        24469999999999999875544 45999999999999999998754

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.77  E-value=4.9e-09  Score=85.97  Aligned_cols=68  Identities=13%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      +..||||+|||+|..|.. |++.+.+|+.||+++.|++.|++++.....     .. ..+++...+++.+ +..||
T Consensus        16 ~~~rILDiGcGtG~~~~~-la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-----~~-~~~~~~d~~~~~~~~~~fD   84 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALA-FSPYVQECIGVDATKEMVEVASSFAQEKGV-----EN-VRFQQGTAESLPFPDDSFD   84 (234)
T ss_dssp             TTCEEEEESCTTSHHHHH-HGGGSSEEEEEESCHHHHHHHHHHHHHHTC-----CS-EEEEECBTTBCCSCTTCEE
T ss_pred             CCCEEEEeCCcCcHHHHH-HHHhCCeEEEEeCChhhhhhhhhhhccccc-----cc-ccccccccccccccccccc
Confidence            457999999999999987 556678999999999999999988744211     23 3788888888763 45676

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=4.2e-09  Score=87.12  Aligned_cols=70  Identities=14%  Similarity=0.013  Sum_probs=55.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +..+|||+|||+|.++..+....-.+|+.||+++.|++.|+++......    .++| +|.+..++++.++..||
T Consensus        33 pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl----~~~v-~~~~~d~~~~~~~~~fD  102 (245)
T d1nkva_          33 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV----SERV-HFIHNDAAGYVANEKCD  102 (245)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC----TTTE-EEEESCCTTCCCSSCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc----cccc-hhhhhHHhhccccCcee
Confidence            3469999999999999875544346999999999999999987644221    2455 88999999988877887

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.74  E-value=5.7e-09  Score=84.19  Aligned_cols=61  Identities=25%  Similarity=0.236  Sum_probs=47.1

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..+|||+|||+|+.|.. |++.+.+|..||+++.|++.|+++...            ++++...+++.. +++||
T Consensus        43 ~~~vLDiGcG~G~~~~~-l~~~~~~v~giD~s~~~l~~a~~~~~~------------~~~~~~~~~l~~~~~~fD  104 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLF-LQERGFEVVLVDPSKEMLEVAREKGVK------------NVVEAKAEDLPFPSGAFE  104 (246)
T ss_dssp             CCEEEEETCTTCHHHHH-HHTTTCEEEEEESCHHHHHHHHHHTCS------------CEEECCTTSCCSCTTCEE
T ss_pred             CCEEEEECCCCchhccc-ccccceEEEEeeccccccccccccccc------------cccccccccccccccccc
Confidence            35899999999999987 567778999999999999999997532            345566666532 34565

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.71  E-value=4.9e-09  Score=86.01  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=53.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|++++. |++.+.+|..|||++.+++.|++.+..         .+ ++++..++++.++.+||
T Consensus        21 ~~~VLDiGcG~G~~~~~-l~~~g~~v~giD~s~~~i~~a~~~~~~---------~~-~~~~~~~~~~~~~~~fD   83 (225)
T d2p7ia1          21 PGNLLELGSFKGDFTSR-LQEHFNDITCVEASEEAISHAQGRLKD---------GI-TYIHSRFEDAQLPRRYD   83 (225)
T ss_dssp             SSCEEEESCTTSHHHHH-HTTTCSCEEEEESCHHHHHHHHHHSCS---------CE-EEEESCGGGCCCSSCEE
T ss_pred             CCcEEEEeCCCcHHHHH-HHHcCCeEEEEeCcHHHhhhhhccccc---------cc-ccccccccccccccccc
Confidence            35799999999999986 677788999999999999999987522         33 78899999999888887

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.71  E-value=1.2e-08  Score=81.29  Aligned_cols=66  Identities=18%  Similarity=0.155  Sum_probs=50.5

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC-CCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN-IIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P-e~~YD  231 (232)
                      ..+|||+|||+|+.|.. |++...+|..+|+++.|++.|++.+...      ...+ ++.+...+++.. .+.||
T Consensus        38 ~~~ILDiGcG~G~~~~~-la~~~~~v~giD~S~~~i~~ak~~~~~~------~~~~-~~~~~d~~~l~~~~~~fD  104 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFL-LEDYGFEVVGVDISEDMIRKAREYAKSR------ESNV-EFIVGDARKLSFEDKTFD  104 (226)
T ss_dssp             CCEEEEETCTTSHHHHH-HHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCC-EEEECCTTSCCSCTTCEE
T ss_pred             CCEEEEECCCcchhhhh-Hhhhhcccccccccccchhhhhhhhccc------cccc-cccccccccccccCcCce
Confidence            36899999999999986 6777889999999999999999876441      1233 667777777653 24555

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.66  E-value=2.4e-08  Score=80.48  Aligned_cols=86  Identities=20%  Similarity=0.242  Sum_probs=64.2

Q ss_pred             ccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCC
Q 026812          132 EVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH  211 (232)
Q Consensus       132 ~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~  211 (232)
                      .+| .+++.+++.|..        .+..+|||+|||+|.+|.. |++.+.+|++||.++.+++.|++++.....   ...
T Consensus        36 ~~d-~~t~lLi~~l~~--------~~~~~VLDiGcG~G~~~~~-la~~~~~v~~iD~s~~~i~~a~~n~~~~~l---~~~  102 (194)
T d1dusa_          36 KVD-KGTKILVENVVV--------DKDDDILDLGCGYGVIGIA-LADEVKSTTMADINRRAIKLAKENIKLNNL---DNY  102 (194)
T ss_dssp             SCC-HHHHHHHHHCCC--------CTTCEEEEETCTTSHHHHH-HGGGSSEEEEEESCHHHHHHHHHHHHHTTC---TTS
T ss_pred             CcC-HHHHHHHHhCCc--------CCCCeEEEEeecCChhHHH-HHhhccccceeeeccccchhHHHHHHHhCC---ccc
Confidence            456 467777776543        2346899999999999986 667789999999999999999998754221   123


Q ss_pred             CcceEEEecCCCccCCCCCC
Q 026812          212 KATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       212 rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ++ ++.+..+.+..++..||
T Consensus       103 ~i-~~~~~d~~~~~~~~~fD  121 (194)
T d1dusa_         103 DI-RVVHSDLYENVKDRKYN  121 (194)
T ss_dssp             CE-EEEECSTTTTCTTSCEE
T ss_pred             eE-EEEEcchhhhhccCCce
Confidence            34 77888877766667887

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.63  E-value=2.2e-08  Score=84.45  Aligned_cols=71  Identities=15%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      .+..++||+|||+|.++..|..+.-.+|+.||+++.+++.|++.......    ..+| +|.+..++++. |+..||
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl----~~~v-~~~~~d~~~l~~~~~sfD  137 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL----ADNI-TVKYGSFLEIPCEDNSYD  137 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC----TTTE-EEEECCTTSCSSCTTCEE
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc----cccc-cccccccccccccccccc
Confidence            34579999999999999875444345899999999999999987644211    2455 89999999886 335776

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.53  E-value=5.6e-08  Score=80.83  Aligned_cols=90  Identities=14%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCC
Q 026812          133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK  212 (232)
Q Consensus       133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~r  212 (232)
                      +.++.-.+|++.+++....    .+..+|||+|||+|..+..+....+.+|..||+++.|++.|++.......    ..+
T Consensus         4 ~~~r~~~N~vK~~lI~~~~----~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~----~~~   75 (252)
T d1ri5a_           4 INIRNANNFIKACLIRLYT----KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR----RFK   75 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC----SSE
T ss_pred             cHHHHHHHHHHHHHHHHhC----CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC----Ccc
Confidence            3444556777765542221    23468999999999999886555678999999999999999976533110    122


Q ss_pred             cceEEEecC--CCccCCCCCC
Q 026812          213 ATNFFCVPL--QVITNIIQYH  231 (232)
Q Consensus       213 v~n~~~vgL--QdF~Pe~~YD  231 (232)
                      + .+++..+  ..+.++..||
T Consensus        76 v-~f~~~D~~~~~~~~~~~fD   95 (252)
T d1ri5a_          76 V-FFRAQDSYGRHMDLGKEFD   95 (252)
T ss_dssp             E-EEEESCTTTSCCCCSSCEE
T ss_pred             e-EEEEcchhhhcccccccce
Confidence            3 5666655  3333455665

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.48  E-value=4.1e-08  Score=78.77  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      .+..++||+|||+|.+|.. |++.+.+|..||.++.+++.|++|+.....    .++| ++++....+.-++ ..||
T Consensus        32 ~~g~~VLDiGcGsG~~s~~-lA~~~~~V~avD~~~~~l~~a~~n~~~~gl----~~~v-~~~~gda~~~~~~~~~~D  102 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLE-LAGRVRRVYAIDRNPEAISTTEMNLQRHGL----GDNV-TLMEGDAPEALCKIPDID  102 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHH-HHTTSSEEEEEESCHHHHHHHHHHHHHTTC----CTTE-EEEESCHHHHHTTSCCEE
T ss_pred             CCCCEEEEEECCeEccccc-ccccceEEEEecCCHHHHHHHHHHHHHcCC----Ccce-EEEECchhhcccccCCcC
Confidence            3457999999999999987 566788999999999999999999866321    2344 6777766554333 3444

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.40  E-value=1.7e-07  Score=79.80  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=53.7

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ++.+|||+|||.|..+.. |++.+   .+|..||+++.+++.|++++...+      .. .+|.+..++++.++.+||
T Consensus        27 ~~~~ILDiGcG~G~~~~~-la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~------~~-~~f~~~d~~~~~~~~~fD   96 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLV-LMPLLPEGSKYTGIDSGETLLAEARELFRLLP------YD-SEFLEGDATEIELNDKYD   96 (281)
T ss_dssp             SCCEEEEETCTTTHHHHH-HTTTSCTTCEEEEEECCHHHHHHHHHHHHSSS------SE-EEEEESCTTTCCCSSCEE
T ss_pred             CcCEEEEecCcCCHHHHH-HHHhCCCCCEEEEEecchhHhhhhhccccccc------cc-ccccccccccccccCCce
Confidence            456899999999999986 56543   579999999999999999875532      12 378888999887767787

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.4e-08  Score=79.27  Aligned_cols=45  Identities=13%  Similarity=0.081  Sum_probs=39.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..+|||||||+|..+..++.....+|+.||+++.+++.|+++...
T Consensus        54 g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          54 GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGG
T ss_pred             CCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhh
Confidence            468999999999999886555567999999999999999998755

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.38  E-value=2.4e-07  Score=75.37  Aligned_cols=45  Identities=13%  Similarity=0.100  Sum_probs=37.7

Q ss_pred             ceeeeccCCccccchHHHHhh---ccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~---~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.+|..|+..   ...+|+.||+++.|++.|++.++.
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~   87 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA   87 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh
Confidence            358999999999999875532   235999999999999999998755

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.2e-07  Score=79.51  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=39.2

Q ss_pred             cceeeeccCCccccchHHHHhhc-------cCeeEEecCcHHHHHHHHHHhCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-------FNEVDLLEPVSHFLDAARESLAPE  203 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-------f~~VDLVEPv~~Fle~Are~l~~~  203 (232)
                      +..+|||+|||+|.+|..||..+       .-+|+.|||++.|++.|++.+...
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~   93 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI   93 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc
Confidence            44689999999999999876543       236899999999999999988663

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=2.1e-07  Score=78.91  Aligned_cols=55  Identities=22%  Similarity=0.161  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l  200 (232)
                      .+.||..++..       ....+|||+|||+|++|..|. +...+|+.||+++.|++.|+++.
T Consensus        44 ~~~~l~~~l~~-------~~~~~vLD~GcG~G~~~~~la-~~g~~v~gvD~S~~ml~~A~~~~   98 (292)
T d1xvaa_          44 YKAWLLGLLRQ-------HGCHRVLDVACGTGVDSIMLV-EEGFSVTSVDASDKMLKYALKER   98 (292)
T ss_dssp             HHHHHHHHHHH-------TTCCEEEESSCTTSHHHHHHH-HTTCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhh-------cCCCEEEEecCCCcHHHHHHH-HcCCeeeeccCchHHHHHHHHHH
Confidence            34566555442       123589999999999999854 55569999999999999998765

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.2e-07  Score=73.94  Aligned_cols=69  Identities=9%  Similarity=-0.071  Sum_probs=49.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCC------------CCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------------APDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~------------~~~~~rv~n~~~vgLQdF  224 (232)
                      +..||||+|||.||.+..| +...-+|+.||.|+.+++.|++.....+..            ......+ +++|..+-++
T Consensus        45 ~~~rvLd~GCG~G~~a~~L-A~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~d~~~l  122 (229)
T d2bzga1          45 SGLRVFFPLCGKAVEMKWF-ADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNI-SLYCCSIFDL  122 (229)
T ss_dssp             CSCEEEETTCTTCTHHHHH-HHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE-EEEESCGGGG
T ss_pred             CCCEEEEeCCCCcHHHHHH-HhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcE-EEEEcchhhc
Confidence            3468999999999999875 555559999999999999999876432100            0011233 7888887776


Q ss_pred             cCC
Q 026812          225 TNI  227 (232)
Q Consensus       225 ~Pe  227 (232)
                      .|.
T Consensus       123 ~~~  125 (229)
T d2bzga1         123 PRT  125 (229)
T ss_dssp             GGS
T ss_pred             ccc
Confidence            654

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.25  E-value=1.2e-07  Score=81.32  Aligned_cols=66  Identities=14%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++.. +++...+|.+||.++.+++.|++|.....      -.+ ++++..+.+..|..+||
T Consensus       121 g~~VLDiGcGsG~l~i~-aa~~g~~V~gvDis~~av~~A~~na~~n~------~~~-~~~~~d~~~~~~~~~fD  186 (254)
T d2nxca1         121 GDKVLDLGTGSGVLAIA-AEKLGGKALGVDIDPMVLPQAEANAKRNG------VRP-RFLEGSLEAALPFGPFD  186 (254)
T ss_dssp             TCEEEEETCTTSHHHHH-HHHTTCEEEEEESCGGGHHHHHHHHHHTT------CCC-EEEESCHHHHGGGCCEE
T ss_pred             cCEEEEcccchhHHHHH-HHhcCCEEEEEECChHHHHHHHHHHHHcC------Cce-eEEeccccccccccccc
Confidence            46899999999999986 66777899999999999999999875521      122 57787777777777887

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=4.6e-07  Score=78.03  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=39.9

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+|||+|||.|..+..+....-.+|+.|+.++..++.|++.+..
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~   97 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS   97 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHh
Confidence            34579999999999999885545457999999999999999988755

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.19  E-value=8.4e-07  Score=75.94  Aligned_cols=71  Identities=14%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             CcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      .+..+|||+|||+|..|..|+..+  ..+|..+|.++.|++.|++++.....    ...| ++.+..+.++.|+..||
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~----~~nv-~~~~~Di~~~~~~~~fD  156 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD----IGNV-RTSRSDIADFISDQMYD  156 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC----CTTE-EEECSCTTTCCCSCCEE
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC----CCce-EEEEeeeecccccceee
Confidence            345799999999999998744333  25899999999999999999865321    1333 78888899988887887

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.18  E-value=3.3e-07  Score=71.72  Aligned_cols=69  Identities=10%  Similarity=0.058  Sum_probs=53.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc--cCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI--TNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF--~Pe~~YD  231 (232)
                      ..++||+|||+|.++...|++.+.+|+.||.++..++.+++++.....    .+++ ++++....+|  .+..+||
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~----~~~~-~ii~~D~~~~l~~~~~~fD   85 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA----ENRF-TLLKMEAERAIDCLTGRFD   85 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC----GGGE-EEECSCHHHHHHHBCSCEE
T ss_pred             CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc----ccch-hhhcccccccccccccccc
Confidence            468999999999999988888889999999999999999999865321    2333 6777666555  2334565

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=1.1e-06  Score=69.78  Aligned_cols=55  Identities=16%  Similarity=0.159  Sum_probs=43.3

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      .+|||+|||+|+.+..+     .+|..||+++.+++.|++.            .+ ++++..++++... +.||
T Consensus        38 ~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~------------~~-~~~~~d~~~l~~~~~~fD   93 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR------------GV-FVLKGTAENLPLKDESFD   93 (208)
T ss_dssp             SCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT------------TC-EEEECBTTBCCSCTTCEE
T ss_pred             CeEEEECCCCccccccc-----ceEEEEeCChhhccccccc------------cc-cccccccccccccccccc
Confidence            47999999999998763     3567899999999999873            12 7888888887543 4666

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.13  E-value=1.2e-06  Score=73.83  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=50.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC-CCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL-QdF~Pe~~YD  231 (232)
                      +..+|||+|||+|..|. +|++++.+|..||.++.+++.|++++...       ..+ ++.+..+ +.|.....||
T Consensus        70 ~g~~VLdIG~GsGy~ta-~La~l~~~V~aiE~~~~~~~~A~~~~~~~-------~nv-~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          70 KGQKVLEIGTGIGYYTA-LIAEIVDKVVSVEINEKMYNYASKLLSYY-------NNI-KLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             TTCEEEEECCTTSHHHH-HHHHHSSEEEEEESCHHHHHHHHHHHTTC-------SSE-EEEESCGGGCCGGGCCEE
T ss_pred             ccceEEEecCCCCHHHH-HHHHHhcccccccccHHHHHHHHHHHhcc-------ccc-ccccCchhhcchhhhhHH
Confidence            45699999999999995 68999999999999999999999988552       223 4555544 3344444677

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.4e-07  Score=72.26  Aligned_cols=47  Identities=17%  Similarity=0.077  Sum_probs=40.4

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..++||+|||+|+++..+..+.+.+|..+|.++.+++.|++++..
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh
Confidence            35679999999999999765556678999999999999999988754

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.13  E-value=1.5e-06  Score=71.27  Aligned_cols=65  Identities=22%  Similarity=0.142  Sum_probs=50.9

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..++.....+|.+||.++..++.|++|+...      ..+ .++++....+|  ..+||
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~------~~~-~~~~~~d~~~~--~~~fD  111 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF------KGK-FKVFIGDVSEF--NSRVD  111 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG------TTS-EEEEESCGGGC--CCCCS
T ss_pred             CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc------CCC-ceEEECchhhh--CCcCc
Confidence            4689999999999999876665679999999999999999997552      122 36777776655  34676

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.10  E-value=1.3e-06  Score=72.39  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=49.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..+|||+|||+|.++..++.....+|..||.++..++.|++|+..           .++.+..+.++.  .+||
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~-----------~~~~~~D~~~l~--~~fD  109 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG-----------VNFMVADVSEIS--GKYD  109 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT-----------SEEEECCGGGCC--CCEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc-----------ccEEEEehhhcC--Ccce
Confidence            468999999999999875555578999999999999999999743           278888887643  3555

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=6.6e-06  Score=71.15  Aligned_cols=70  Identities=13%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYHS  232 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD~  232 (232)
                      .+..++||+|||.|..+..+....-.+|+.|..++.-++.|++.++...    ..+++ ++.+....++  +..||.
T Consensus        61 ~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g----~~~~v-~~~~~d~~~~--~~~fD~  130 (285)
T d1kpga_          61 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSE----NLRSK-RVLLAGWEQF--DEPVDR  130 (285)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCC----CCSCE-EEEESCGGGC--CCCCSE
T ss_pred             CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhh----hhhhh-HHHHhhhhcc--cccccc
Confidence            4557999999999999998666655799999999999999998765521    12333 5555555443  347773

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.03  E-value=3e-06  Score=72.42  Aligned_cols=69  Identities=10%  Similarity=0.031  Sum_probs=55.4

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|-+|..++.....+|.+||.++..++.|++|+.....    .++| ++++....+|.++..||
T Consensus       108 g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l----~~~v-~~~~~D~~~~~~~~~~D  176 (260)
T d2frna1         108 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV----EDRM-SAYNMDNRDFPGENIAD  176 (260)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC----TTTE-EEECSCTTTCCCCSCEE
T ss_pred             ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC----CceE-EEEEcchHHhccCCCCC
Confidence            368999999999999986655446999999999999999999865322    2444 78888888888776666

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.00  E-value=2e-06  Score=70.84  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||+|||+|..|.. |++.+   .+|..+|.++.+++.|++++..
T Consensus        75 ~g~~VLdiG~GtG~~s~~-la~~~~~~g~V~~id~~~~~~~~a~~~~~~  122 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAV-MSRVVGEKGLVVSVEYSRKICEIAKRNVER  122 (213)
T ss_dssp             TTCEEEEECCTTSHHHHH-HHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccceEEEecCccchhHHH-HHHHhCCCCcEEEeecchhhHHHhhhhHhh
Confidence            457999999999999974 77765   3799999999999999999865

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.99  E-value=3.7e-06  Score=71.02  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ....++||+|||+|.+|..|| +.+.+|++||.++.|++.+++.+...       ..+ ++++..+-+|..
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll-~~~~~v~avE~D~~l~~~l~~~~~~~-------~n~-~i~~~D~l~~~~   81 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELV-QRCNFVTAIEIDHKLCKTTENKLVDH-------DNF-QVLNKDILQFKF   81 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHH-HHSSEEEEECSCHHHHHHHHHHTTTC-------CSE-EEECCCGGGCCC
T ss_pred             CCCCeEEEECCCchHHHHHHH-hCcCceEEEeeccchHHHHHHHhhcc-------cch-hhhhhhhhhccc
Confidence            356789999999999999855 66889999999999999999987542       233 777777776664

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=7.5e-06  Score=70.96  Aligned_cols=47  Identities=17%  Similarity=0.193  Sum_probs=40.6

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+|||+|||.|..+..+......+|+-|..++..++.|++....
T Consensus        60 ~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~  106 (291)
T d1kpia_          60 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDE  106 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHh
Confidence            35579999999999999986666678999999999999999887654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=7.9e-06  Score=68.80  Aligned_cols=63  Identities=16%  Similarity=0.088  Sum_probs=47.2

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..+|||+|||.|.++..|..... .+|..||+++.|++.|++...          ++ ++.+..++++... ..||
T Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~----------~~-~~~~~d~~~l~~~~~sfD  149 (268)
T d1p91a_          85 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----------QV-TFCVASSHRLPFSDTSMD  149 (268)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----------TS-EEEECCTTSCSBCTTCEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc----------cc-cceeeehhhccCCCCCEE
Confidence            46899999999999987544432 378899999999999998642          23 6777788877633 3555

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.6e-05  Score=67.95  Aligned_cols=68  Identities=12%  Similarity=0.128  Sum_probs=48.1

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      +..+|||+|||+|.++.. +++. .++|.+||.++.+...++ .......    ..+| ++.+..++++. |..+||
T Consensus        35 ~~~~VLDiGcG~G~lsl~-aa~~Ga~~V~aid~s~~~~~a~~-~~~~~~~----~~~i-~~~~~~~~~l~~~~~~~D  104 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMF-AAKAGAKKVLGVDQSEILYQAMD-IIRLNKL----EDTI-TLIKGKIEEVHLPVEKVD  104 (311)
T ss_dssp             TTCEEEEETCTTSHHHHH-HHHTTCSEEEEEESSTHHHHHHH-HHHHTTC----TTTE-EEEESCTTTSCCSCSCEE
T ss_pred             CcCEEEEECCCCCHHHHH-HHHcCCCEEEEEeCHHHHHHHHH-HHHHhCC----Cccc-eEEEeeHHHhcCccccce
Confidence            346899999999999974 5665 579999999999875443 3322211    2444 78888888886 445666

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=4.2e-06  Score=67.34  Aligned_cols=60  Identities=22%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .++||++||+|.++...|++.+++|+.||.++..++.+++|+.....     ..+ .+++....+|
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-----~~~-~ii~~d~~~~  104 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-----GNA-RVVNSNAMSF  104 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSE-EEECSCHHHH
T ss_pred             hhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-----cce-eeeeeccccc
Confidence            58999999999999999999999999999999999999999865211     222 5555555444

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=67.48  Aligned_cols=47  Identities=13%  Similarity=0.035  Sum_probs=40.8

Q ss_pred             CcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..++||+|||+|..+...+.+.+.+|.++|.++.|++.|++.+..
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            34579999999999998655668899999999999999999988755

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=4.3e-06  Score=69.60  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=38.7

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      +..+|||+|||+|..|. +|++++   .+|..||.++.+++.|++++..
T Consensus        76 ~g~~VLdiG~GsGy~ta-~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~  123 (224)
T d1i1na_          76 EGAKALDVGSGSGILTA-CFARMVGCTGKVIGIDHIKELVDDSVNNVRK  123 (224)
T ss_dssp             TTCEEEEETCTTSHHHH-HHHHHHCTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHH-HHHHHhCCCceEEEEcCCHHHHHHHHHhccc
Confidence            45799999999999995 678774   4899999999999999988753

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.75  E-value=9.5e-06  Score=67.72  Aligned_cols=68  Identities=15%  Similarity=0.231  Sum_probs=50.8

Q ss_pred             cceeeeccCCccccchHHHHhhccC-eeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecC-CCccCCCCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QVITNIIQYH  231 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~-~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgL-QdF~Pe~~YD  231 (232)
                      +..+|||+|||+|-.|- +|++++. +|..||.++.+++.|++++.....     ..+ .+.+... +.|.+...||
T Consensus        78 ~g~~VLeIGsGsGY~ta-ila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-----~nv-~~~~gd~~~g~~~~~pfD  147 (215)
T d1jg1a_          78 PGMNILEVGTGSGWNAA-LISEIVKTDVYTIERIPELVEFAKRNLERAGV-----KNV-HVILGDGSKGFPPKAPYD  147 (215)
T ss_dssp             TTCCEEEECCTTSHHHH-HHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-----CSE-EEEESCGGGCCGGGCCEE
T ss_pred             ccceEEEecCCCChhHH-HHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-----cee-EEEECccccCCcccCcce
Confidence            45799999999999995 7898875 799999999999999999866321     333 4455444 3354445776

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=1.6e-05  Score=68.00  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             CcceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..++||+|||+|.+|..| ++.+   .+|..||.++.|++.|++++..
T Consensus       102 ~pG~~VLDiG~GsG~lt~~l-A~~~~~~G~V~~vD~~~~~~~~A~~~~~~  150 (266)
T d1o54a_         102 KEGDRIIDTGVGSGAMCAVL-ARAVGSSGKVFAYEKREEFAKLAESNLTK  150 (266)
T ss_dssp             CTTCEEEEECCTTSHHHHHH-HHHTTTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHH-HHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence            34579999999999999874 5443   5999999999999999999865

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.72  E-value=3.3e-05  Score=64.50  Aligned_cols=46  Identities=13%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             CcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+|||+|||+|..+.+ |+..+  ..|.+||.++.|++.|++....
T Consensus        73 kpG~~VLDlGcGsG~~~~~-la~~~~~g~V~aVDiS~~~i~~a~~~a~~  120 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSH-VADIADKGIVYAIEYAPRIMRELLDACAE  120 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHH-HHHHTTTSEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCCCEEEEeCEEcCHHHHH-HHHhCCCCEEEEEeCcHHHHHHHHHHHhh
Confidence            4567999999999999987 55655  5899999999999999987544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=1.5e-05  Score=68.73  Aligned_cols=67  Identities=16%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      ..+|||+|||+|.++. ++++. .++|.+||.++ +++.|++.......    ..+| .+++..+.++. |+++||
T Consensus        39 ~~~VLDlGcGtG~ls~-~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~----~~~i-~~i~~~~~~l~~~~~~~D  107 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSM-FAAKHGAKHVIGVDMSS-IIEMAKELVELNGF----SDKI-TLLRGKLEDVHLPFPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHH-HHHHTCCSEEEEEESST-HHHHHHHHHHHTTC----TTTE-EEEESCTTTSCCSSSCEE
T ss_pred             cCEEEEeCCCCCHHHH-HHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCc----cccc-eEEEeehhhccCccccee
Confidence            3589999999999996 46665 57999999986 67888876654322    2344 78888888886 445665

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.5e-05  Score=68.87  Aligned_cols=68  Identities=15%  Similarity=0.080  Sum_probs=52.8

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|-++..+.... -.+|.+||.++..++.|++|......     .+| +|++..+-+..+..+||
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-----~~v-~~~~~d~~~~~~~~~fD  177 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNI-HILQSDWFSALAGQQFA  177 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-----CSE-EEECCSTTGGGTTCCEE
T ss_pred             ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-----ccc-eeeecccccccCCCcee
Confidence            4689999999999998755444 36999999999999999999755211     234 78888887766666776

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.66  E-value=1.9e-05  Score=64.89  Aligned_cols=46  Identities=13%  Similarity=0.072  Sum_probs=38.7

Q ss_pred             CcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+|||+|||+|..|.+ |++++  .+|.+||.++.|++.|++....
T Consensus        55 kpg~~VLDlGcG~G~~~~~-la~~v~~g~V~gvDis~~~i~~a~~~a~~  102 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSH-LADIVDEGIIYAVEYSAKPFEKLLELVRE  102 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHH-HHHHTTTSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCcCCHHHHH-HHHhccCCeEEEEeCCHHHHHHHHHHhhc
Confidence            4567999999999998876 67765  5799999999999999887633

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=6.7e-05  Score=64.92  Aligned_cols=66  Identities=17%  Similarity=0.138  Sum_probs=51.2

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNII  228 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~  228 (232)
                      ....||+||+|.|.+|+.|| +...+|.+||.++.|++.+++.+.....    ..++ ++++..+-.+.++.
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll-~~~~~v~aiE~D~~l~~~L~~~~~~~~~----~~~~-~~i~~D~l~~~~~~   86 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLL-EKAKKVVACELDPRLVAELHKRVQGTPV----ASKL-QVLVGDVLKTDLPF   86 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHH-HHSSEEEEEESCHHHHHHHHHHHTTSTT----GGGE-EEEESCTTTSCCCC
T ss_pred             CCCEEEEECCCchHHHHHHH-hcCCcEEEEEEccchhHHHHHHHhhhcc----ccch-hhhHHHHhhhhhhh
Confidence            44689999999999999865 5578999999999999999998855321    1233 67787777776543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=1.6e-05  Score=68.38  Aligned_cols=67  Identities=19%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             ceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC-CCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI-IQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe-~~YD  231 (232)
                      ..+|||+|||+|.++.. +++. ..+|.+||+++. ...|++++.....    .++| ++.+..++++..+ +++|
T Consensus        34 ~~~VLDiGcG~G~ls~~-aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~----~~~v-~~~~~~~~~~~~~~~~~D  102 (316)
T d1oria_          34 DKVVLDVGSGTGILCMF-AAKAGARKVIGIECSSI-SDYAVKIVKANKL----DHVV-TIIKGKVEEVELPVEKVD  102 (316)
T ss_dssp             TCEEEEETCTTSHHHHH-HHHTTCSEEEEEECSTT-HHHHHHHHHHTTC----TTTE-EEEESCTTTCCCSSSCEE
T ss_pred             cCEEEEEecCCcHHHHH-HHHhCCCEEEEEcCcHH-HhhhhhHHHHhCC----cccc-ceEeccHHHcccccceeE
Confidence            35799999999999974 6665 578999999986 4666665543222    2444 8888888888743 4555

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.60  E-value=5.7e-06  Score=70.37  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      +...|||+|||+|.+|.. |++...+|.+||.++.|++.+++.+...       ..+ ++.+..+.+|+.+
T Consensus        29 ~~d~VLEIGpG~G~LT~~-L~~~~~~v~aIE~D~~l~~~l~~~~~~~-------~n~-~ii~~D~l~~~~~   90 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTK-LAKISKQVTSIELDSHLFNLSSEKLKLN-------TRV-TLIHQDILQFQFP   90 (245)
T ss_dssp             SSEEEEECSCCCSSCSHH-HHHHSSEEEESSSSCSSSSSSSCTTTTC-------SEE-EECCSCCTTTTCC
T ss_pred             CCCeEEEECCCccHHHHH-HHhhcCceeEeeecccchhhhhhhhhhc-------cch-hhhhhhhhccccc
Confidence            457899999999999987 5667889999999999999988776431       233 7778888777644

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=3.3e-05  Score=65.85  Aligned_cols=60  Identities=8%  Similarity=0.097  Sum_probs=47.7

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      ...+|++|||.|-+|.. |++.+.+|.+||.++.|++.+++.+..       ..++ ++++.+.-+|++
T Consensus        22 ~d~vlEIGpG~G~LT~~-Ll~~~~~v~aiEiD~~l~~~L~~~~~~-------~~~~-~ii~~D~l~~~~   81 (252)
T d1qyra_          22 GQAMVEIGPGLAALTEP-VGERLDQLTVIELDRDLAARLQTHPFL-------GPKL-TIYQQDAMTFNF   81 (252)
T ss_dssp             TCCEEEECCTTTTTHHH-HHTTCSCEEEECCCHHHHHHHHTCTTT-------GGGE-EEECSCGGGCCH
T ss_pred             CCEEEEECCCchHHHHH-HHccCCceEEEEeccchhHHHHHHhhh-------ccch-hHHhhhhhhhcc
Confidence            46799999999999987 567789999999999999999886533       1344 777777766654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.56  E-value=3.5e-05  Score=66.23  Aligned_cols=73  Identities=16%  Similarity=0.066  Sum_probs=50.2

Q ss_pred             CcceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc-CCCCCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT-NIIQYH  231 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~-Pe~~YD  231 (232)
                      .+..+|||+|||+|..|..|..-+.  -+|..+|.++.|++.|++++....  +.....+ .+.+..+.+.. |+..||
T Consensus        95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~--~~~~~nv-~~~~~d~~~~~~~~~~fD  170 (264)
T d1i9ga_          95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY--GQPPDNW-RLVVSDLADSELPDGSVD  170 (264)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH--TSCCTTE-EEECSCGGGCCCCTTCEE
T ss_pred             CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc--cCCCceE-EEEecccccccccCCCcc
Confidence            3457999999999999987444333  499999999999999999875410  0011222 56666666543 345666

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.46  E-value=6.9e-05  Score=62.68  Aligned_cols=67  Identities=16%  Similarity=0.092  Sum_probs=46.8

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..|+..+- -++.++|. +.+++.|+++++....    ..++ .+....+.+..|. .||
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~----~~ri-~~~~~d~~~~~p~-~~D  149 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL----ADRV-TVAEGDFFKPLPV-TAD  149 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCSC-CEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC----ccee-eeeeeeccccccc-cch
Confidence            45899999999999999665542 48899996 7899999988865321    2444 5555555544443 455

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.46  E-value=5e-05  Score=62.84  Aligned_cols=67  Identities=19%  Similarity=0.130  Sum_probs=46.7

Q ss_pred             ceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      ..++||+|||+|.++..|+...- -+|..+|. +.+++.+++++.....    ..+| ++.+..+-+..|. .||
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~----~~rv-~~~~~D~~~~~~~-~~D  148 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL----SDRV-DVVEGDFFEPLPR-KAD  148 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC----TTTE-EEEECCTTSCCSS-CEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc----ccch-hhccccchhhccc-chh
Confidence            45899999999999998655432 47777886 6789999988765321    2454 6777766555443 455

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.45  E-value=0.00011  Score=61.46  Aligned_cols=46  Identities=11%  Similarity=0.033  Sum_probs=39.5

Q ss_pred             CcceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+..+|||+|||+|..|.+ |++.+   -+|-+||+++.|++.|++....
T Consensus        72 ~pG~~VLDlGaGsG~~t~~-la~~VG~~G~V~aVD~s~~~l~~a~~~a~~  120 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASH-VSDIVGWEGKIFGIEFSPRVLRELVPIVEE  120 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHH-HHHHHCTTSEEEEEESCHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeccCCCHHHHH-HHHHhCCCCEEEEEeCcHHHHHHHHHHHHh
Confidence            4567999999999999987 56654   5899999999999999988754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=6.6e-05  Score=59.60  Aligned_cols=44  Identities=18%  Similarity=0.034  Sum_probs=38.2

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ..++||+|||+|.++...+.. ..+|.+||.++.+++.+++|+..
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~   85 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRR   85 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHh
Confidence            358999999999999886655 55899999999999999999765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.38  E-value=7.5e-06  Score=68.45  Aligned_cols=64  Identities=20%  Similarity=0.317  Sum_probs=46.7

Q ss_pred             cccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc--------CeeEEecCcHHHHHHHHHHh
Q 026812          129 NVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--------NEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       129 ~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f--------~~VDLVEPv~~Fle~Are~l  200 (232)
                      .+|.+.+.  ...|..|...      ..+..+|||+|||+|-.|- +|++++        .+|..||.++.|++.|++++
T Consensus        60 ~is~P~~~--a~~l~~L~~~------l~~g~~VLeIGtGsGY~ta-~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l  130 (223)
T d1r18a_          60 TISAPHMH--AFALEYLRDH------LKPGARILDVGSGSGYLTA-CFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL  130 (223)
T ss_dssp             EECCHHHH--HHHHHHTTTT------CCTTCEEEEESCTTSHHHH-HHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             eeehhhhH--HHHHHHHhhc------cCCCCeEEEecCCCCHHHH-HHHHHhhhccCCcccEEEEEecCHHHHHHHHHhh
Confidence            46665543  2455554321      1345799999999999995 688875        37999999999999999876


Q ss_pred             C
Q 026812          201 A  201 (232)
Q Consensus       201 ~  201 (232)
                      .
T Consensus       131 ~  131 (223)
T d1r18a_         131 N  131 (223)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00017  Score=60.60  Aligned_cols=87  Identities=14%  Similarity=0.102  Sum_probs=56.6

Q ss_pred             ccccchh-hHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-CeeEEecCcHHHHHHHHHHhCCCCCCC
Q 026812          130 VNEVDIK-GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA  207 (232)
Q Consensus       130 vs~~Di~-gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~~VDLVEPv~~Fle~Are~l~~~~~~~  207 (232)
                      +++++-+ .-...|..+......  ......++||+|||+|-|+.-|..... .+|.++|.++..++.|++|+.....  
T Consensus        35 iPr~~~r~~~~~~i~~l~~~~~~--~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l--  110 (250)
T d2h00a1          35 IPTVPLRLNYIHWVEDLIGHQDS--DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL--  110 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCCCG--GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred             cCCCCCHHHHHHHHHHHhhhhcc--CccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC--
Confidence            6666543 224456666542221  123446899999999999976444432 5999999999999999999866432  


Q ss_pred             CCCCCcceEEEecCCC
Q 026812          208 PDMHKATNFFCVPLQV  223 (232)
Q Consensus       208 ~~~~rv~n~~~vgLQd  223 (232)
                        .+++ .++++..++
T Consensus       111 --~~~~-~~~~~~~~~  123 (250)
T d2h00a1         111 --SDLI-KVVKVPQKT  123 (250)
T ss_dssp             --TTTE-EEEECCTTC
T ss_pred             --Ccce-eeeeeccHH
Confidence              2444 555554443

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=3e-05  Score=67.83  Aligned_cols=96  Identities=14%  Similarity=0.041  Sum_probs=62.6

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|.-+++..|-..-...|..+....     .....+||.+|.|.|.+...+|... ..+||+||.++..++.|++++.
T Consensus        48 ~ldg~~q~~~~de~~Yhe~l~h~~l~~-----~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~  122 (312)
T d1uira_          48 ILDKDVQSTERDEYIYHETLVHPAMLT-----HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP  122 (312)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHHH-----SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             EECCeeeeccccHHHHHHHHhhhhhhh-----CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCc
Confidence            455555667777544455566543211     1234689999999999999876553 5799999999999999999873


Q ss_pred             CCCCCCCCCCCcceEEEecCCCc
Q 026812          202 PENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      .......+..|+ ++++..-.+|
T Consensus       123 ~~~~~~~~d~rv-~i~~~Da~~~  144 (312)
T d1uira_         123 EWHQGAFDDPRA-VLVIDDARAY  144 (312)
T ss_dssp             HHHTTGGGCTTE-EEEESCHHHH
T ss_pred             ccccCccCCCce-EEEEchHHHH
Confidence            210001123455 6666655555

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.29  E-value=3.2e-05  Score=66.30  Aligned_cols=74  Identities=15%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             ccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          124 LGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       124 LGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      |.|.-+++..|-..-...|..+....     ..+..+||-+|+|.|.+...+|.+-..+||+||.++..++.|++++..
T Consensus        44 Ldg~~q~~~~de~~Yhe~l~~~~l~~-----~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~  117 (276)
T d1mjfa_          44 LDGTVQLVTLGERSYHEPLVHPAMLA-----HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKI  117 (276)
T ss_dssp             ETTEEEEETTTTHHHHHHHHHHHHHH-----SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCT
T ss_pred             ECCceeeeccchhHHHHHhhcchhhc-----CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhh
Confidence            34444566666443344454432110     134569999999999999998877678999999999999999998843

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.26  E-value=0.00012  Score=58.84  Aligned_cols=63  Identities=19%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ...++||+.||+|-++...|++.+.+|++||.++..++.+++|+.....    ..++ ++++....+|
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~----~~~~-~i~~~D~~~~  103 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE----PEKF-EVRKMDANRA  103 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC----GGGE-EEEESCHHHH
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc----cccc-ccccccchhh
Confidence            3469999999999999999999999999999999999999999854221    1233 6777765543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00016  Score=65.65  Aligned_cols=46  Identities=15%  Similarity=0.054  Sum_probs=38.0

Q ss_pred             CcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ++..++||+|||+|.++..+.... +++|.-||.++.+++.|+++..
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence            345789999999999998754443 5689999999999999987653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00022  Score=62.64  Aligned_cols=67  Identities=19%  Similarity=0.179  Sum_probs=47.0

Q ss_pred             cceeeeccCCccccchHHHHhhcc---CeeEEecCcHHHHHHHHHHhCCC------CCCCCCCCCcceEEEecCCCcc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f---~~VDLVEPv~~Fle~Are~l~~~------~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      +..+|||+|||+|..|.. |++.+   .+|..+|.++.|++.|++++...      .........+ ++++..+.++.
T Consensus        98 pG~rVLE~GtGsG~lt~~-LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv-~~~~~di~~~~  173 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLF-LSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-DFIHKDISGAT  173 (324)
T ss_dssp             TTCEEEEECCTTSHHHHH-HHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-EEEESCTTCCC
T ss_pred             CCCEEEEecccccHHHHH-HHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce-eEEecchhhcc
Confidence            457999999999999987 55543   38999999999999999987531      0000111233 66777776654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00036  Score=56.83  Aligned_cols=61  Identities=21%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      +...+|||+||.|-.|+.+|... ..+|.++|+++.+++.|++.+...      ..++ .+++..+.++
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~------~~r~-~~~~~~f~~~   84 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF------SDRV-SLFKVSYREA   84 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG------TTTE-EEEECCGGGH
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc------cccc-cchhHHHhhH
Confidence            34689999999999999988765 369999999999999999988552      1344 7777776654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.17  E-value=0.00024  Score=61.60  Aligned_cols=79  Identities=14%  Similarity=0.053  Sum_probs=58.2

Q ss_pred             cccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCC
Q 026812          131 NEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM  210 (232)
Q Consensus       131 s~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~  210 (232)
                      .-.|....+.++..+..         +..++||+|||+|-+|..++.....+|..||.++..++.|++|+.....    .
T Consensus       128 ~flDqr~~r~~~~~~~~---------~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl----~  194 (324)
T d2as0a2         128 FFLDQRENRLALEKWVQ---------PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV----E  194 (324)
T ss_dssp             CCSTTHHHHHHHGGGCC---------TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC----G
T ss_pred             cccchhhHHHHHHhhcC---------CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC----C
Confidence            33566677888876533         2368999999999999987766678999999999999999999865211    1


Q ss_pred             CCcceEEEecCCC
Q 026812          211 HKATNFFCVPLQV  223 (232)
Q Consensus       211 ~rv~n~~~vgLQd  223 (232)
                      .++ ++++...-+
T Consensus       195 ~~~-~~~~~d~~~  206 (324)
T d2as0a2         195 DRM-KFIVGSAFE  206 (324)
T ss_dssp             GGE-EEEESCHHH
T ss_pred             ccc-eeeechhhh
Confidence            233 566655443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00084  Score=57.59  Aligned_cols=63  Identities=17%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      +..++||+-||+|.+|.. |++.+.+|..||.++..++.|++|.....      -.-..|++...+++-+
T Consensus       212 ~~~~vlDLycG~G~fsl~-La~~~~~V~gvE~~~~ai~~A~~na~~n~------i~n~~~~~~~~~~~~~  274 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLP-LATQAASVVGVEGVPALVEKGQQNARLNG------LQNVTFYHENLEEDVT  274 (358)
T ss_dssp             TTCEEEEESCTTTTTHHH-HHTTSSEEEEEESCHHHHHHHHHHHHHTT------CCSEEEEECCTTSCCS
T ss_pred             CCceEEEecccccccchh-ccccccEEEeccCcHHHHHHHHHhHHhcc------cccceeeecchhhhhh
Confidence            346899999999999986 78889999999999999999999875421      1112667777766543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00018  Score=62.35  Aligned_cols=60  Identities=20%  Similarity=0.078  Sum_probs=46.6

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..+|||++||+|..|.. ++....+|..||.++.+++.|++|+.....     ..+ ++++....+|
T Consensus       146 g~rVLDl~~gtG~~s~~-~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-----~~~-~~i~~d~~~~  205 (318)
T d1wxxa2         146 GERALDVFSYAGGFALH-LALGFREVVAVDSSAEALRRAEENARLNGL-----GNV-RVLEANAFDL  205 (318)
T ss_dssp             EEEEEEETCTTTHHHHH-HHHHEEEEEEEESCHHHHHHHHHHHHHTTC-----TTE-EEEESCHHHH
T ss_pred             CCeeeccCCCCcHHHHH-HHhcCCcEEeecchHHHHHHHHHHHHHcCC-----CCc-ceeeccHHHH
Confidence            47999999999999988 566788999999999999999999865211     122 5566655443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.04  E-value=0.00042  Score=60.73  Aligned_cols=81  Identities=11%  Similarity=0.037  Sum_probs=58.3

Q ss_pred             cchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCC
Q 026812          133 VDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK  212 (232)
Q Consensus       133 ~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~r  212 (232)
                      .|-...+.++..+...      ..+..+|||+.||+|-+|..++ ....+|+.||.++..++.|++|+.....   +..+
T Consensus       114 ~dqr~nr~~~~~~~~~------~~~~~rVLdlf~~tG~~sl~aa-~~GA~V~~VD~s~~al~~a~~N~~ln~~---~~~~  183 (309)
T d2igta1         114 PEQIVHWEWLKNAVET------ADRPLKVLNLFGYTGVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAGL---EQAP  183 (309)
T ss_dssp             GGGHHHHHHHHHHHHH------SSSCCEEEEETCTTCHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHTC---TTSC
T ss_pred             cchhHHHHHHHHHHhh------ccCCCeEEEecCCCcHHHHHHH-hCCCeEEEEeChHHHHHHHHHhhhhhcc---cCCc
Confidence            5767788888876542      1234699999999999999855 5556999999999999999999754211   1123


Q ss_pred             cceEEEecCCCc
Q 026812          213 ATNFFCVPLQVI  224 (232)
Q Consensus       213 v~n~~~vgLQdF  224 (232)
                      + +|++...-+|
T Consensus       184 ~-~~i~~D~~~~  194 (309)
T d2igta1         184 I-RWICEDAMKF  194 (309)
T ss_dssp             E-EEECSCHHHH
T ss_pred             E-EEEeCCHHHh
Confidence            3 6666655444

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0003  Score=60.98  Aligned_cols=45  Identities=16%  Similarity=0.098  Sum_probs=37.3

Q ss_pred             CcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHh
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l  200 (232)
                      ++..++||+|||+|+++..+.... +.+|-.||.++.+++.|++.+
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~  195 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD  195 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence            345689999999999998864443 578999999999999998764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.90  E-value=0.00044  Score=56.52  Aligned_cols=42  Identities=12%  Similarity=0.206  Sum_probs=36.3

Q ss_pred             eeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCC
Q 026812          160 VALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+||+|||.|+.+.. |++.+  ..|..||+++.++..|.+.+..
T Consensus        32 lvLeIGcG~G~~~~~-lA~~~p~~~~iGiD~~~~~i~~a~~~~~~   75 (204)
T d2fcaa1          32 IHIEVGTGKGQFISG-MAKQNPDINYIGIELFKSVIVTAVQKVKD   75 (204)
T ss_dssp             EEEEECCTTSHHHHH-HHHHCTTSEEEEECSCHHHHHHHHHHHHH
T ss_pred             eEEEEEecCcHHHHH-HHHhCCCCcEEEeecchHHHHHHHHHHHH
Confidence            699999999999988 55555  6899999999999999887654

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00075  Score=58.63  Aligned_cols=46  Identities=22%  Similarity=0.266  Sum_probs=39.0

Q ss_pred             cceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ....|||||+|.|-+|..||... ..+|.+||+++.|++.+++.+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~   89 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG   89 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC
Confidence            34689999999999999977553 46899999999999999987643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.73  E-value=0.001  Score=54.20  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=43.2

Q ss_pred             eeeccCCccccchHHHHhhcc--CeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCcc
Q 026812          160 VALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVIT  225 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~  225 (232)
                      .+||+|||.|..+.. |++.+  ..|..||+++.++..|.+.+.....     ..| .+++...+++.
T Consensus        34 lvLdIGcG~G~~~~~-lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-----~Ni-~~~~~da~~l~   94 (204)
T d1yzha1          34 IHVEVGSGKGAFVSG-MAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-----PNI-KLLWVDGSDLT   94 (204)
T ss_dssp             EEEEESCTTSHHHHH-HHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-----SSE-EEEECCSSCGG
T ss_pred             eEEEEeccCCHHHHH-HHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-----ccc-eeeecCHHHHh
Confidence            699999999999988 56654  5688999999999999776543211     112 56777766653

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.71  E-value=0.00077  Score=53.61  Aligned_cols=44  Identities=23%  Similarity=0.224  Sum_probs=41.6

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .++||+-||+|.++...|++.+++|+.||.+.+.++.+++|+..
T Consensus        45 ~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~   88 (183)
T d2ifta1          45 SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQT   88 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             ceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhh
Confidence            58999999999999999999999999999999999999998754

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0034  Score=51.60  Aligned_cols=107  Identities=13%  Similarity=0.136  Sum_probs=66.2

Q ss_pred             hhhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhcc-C
Q 026812          103 TQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N  181 (232)
Q Consensus       103 ~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~f-~  181 (232)
                      -.-|..-..-|+++   +|     .-.....+-.-.+-|++++..-...     ....+||+|+|-|-=+..+-.-.- .
T Consensus        24 L~~y~~ll~~~N~~---~N-----Lts~~~~~~~~~rHi~DSl~~~~~~-----~~~~ilDiGsGaG~PGi~laI~~p~~   90 (207)
T d1jsxa_          24 LIAYVNMLHKWNKA---YN-----LTSVRDPNEMLVRHILDSIVVAPYL-----QGERFIDVGTGPGLPGIPLSIVRPEA   90 (207)
T ss_dssp             HHHHHHHHHHHC--------------------CHHHHHHHHHHHHGGGC-----CSSEEEEETCTTTTTHHHHHHHCTTS
T ss_pred             HHHHHHHHHHhCCc---ee-----eEECCCHHHHHHHHhcchHhhhhhh-----cCCceeeeeccCCceeeehhhhcccc
Confidence            34577888888864   33     2223333323467888887653322     235799999999999987544332 4


Q ss_pred             eeEEecCcHHHHH---HHHHHhCCCCCCCCCCCCcceEEEecCCCccCCCCCC
Q 026812          182 EVDLLEPVSHFLD---AARESLAPENHMAPDMHKATNFFCVPLQVITNIIQYH  231 (232)
Q Consensus       182 ~VDLVEPv~~Fle---~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe~~YD  231 (232)
                      +|+|||.+.+=+.   .+...+.-        ..+ .++|...+++.+..+||
T Consensus        91 ~~~Lves~~KK~~FL~~~~~~L~L--------~nv-~v~~~R~E~~~~~~~fD  134 (207)
T d1jsxa_          91 HFTLLDSLGKRVRFLRQVQHELKL--------ENI-EPVQSRVEEFPSEPPFD  134 (207)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHTTC--------SSE-EEEECCTTTSCCCSCEE
T ss_pred             eEEEEecchHHHHHHHHHHHHcCC--------cce-eeeccchhhhccccccc
Confidence            9999999987555   44444432        223 78899999998877887

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.0016  Score=55.75  Aligned_cols=127  Identities=13%  Similarity=-0.001  Sum_probs=74.7

Q ss_pred             ccCHHHHHHHHhccCCchhhhhhhhhhhhhhcccCCccchhccccCCCcccccchhhH-HHHHHHHhcCCCCCcCCCcce
Q 026812           81 FKNAEEMWREQIGEDGEQQEKKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGS-EAFLQMLLSDRFPNARNNQHL  159 (232)
Q Consensus        81 ~~s~~emWk~~~~~d~~~~~~~~~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS-~~FL~~L~~~~~~~~~~~~~~  159 (232)
                      ...+.++.++....      ..-+--.....||.-.=....|||     +++.|-.-- ...++.+..        ....
T Consensus        52 ~~~~~~~i~rR~~~------~Pl~YI~g~~~F~~~~f~v~~~vl-----IPRpeTE~lv~~~~~~~~~--------~~~~  112 (271)
T d1nv8a_          52 EKRILELVEKRASG------YPLHYILGEKEFMGLSFLVEEGVF-----VPRPETEELVELALELIRK--------YGIK  112 (271)
T ss_dssp             HHHHHHHHHHHHTT------CCHHHHHTEEEETTEEEECCTTSC-----CCCTTHHHHHHHHHHHHHH--------HTCC
T ss_pred             HHHHHHHHHHhhCC------CChhhhcCcEEEeeeEEEEecCcc-----Cchhhhhhhhhhhhhhhcc--------cccc
Confidence            44455556555533      111223344566664333334455     777774321 222333222        1234


Q ss_pred             eeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC--CCCC
Q 026812          160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI--IQYH  231 (232)
Q Consensus       160 rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe--~~YD  231 (232)
                      ++||+|||+|-++..+...--.+|.+||.++.-++.|++|......    ..++ .+++..+.+..++  .+||
T Consensus       113 ~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~----~~~~-~i~~~~~~~~~~~~~~~fD  181 (271)
T d1nv8a_         113 TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV----SDRF-FVRKGEFLEPFKEKFASIE  181 (271)
T ss_dssp             EEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC----TTSE-EEEESSTTGGGGGGTTTCC
T ss_pred             EEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC----Ccee-EEeecccccccccccCccc
Confidence            7999999999999764432236899999999999999999865322    1233 5677777665554  2666

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.19  E-value=0.001  Score=54.51  Aligned_cols=76  Identities=9%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcce
Q 026812          138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN  215 (232)
Q Consensus       138 S~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n  215 (232)
                      ..+||..|...       .+..+|||+|+|.|.-|..|+..+  -.+|..||.++.+++.|++++.....    .++| +
T Consensus        44 ~G~lL~~lv~~-------~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl----~~~i-~  111 (214)
T d2cl5a1          44 KGQIMDAVIRE-------YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL----QDKV-T  111 (214)
T ss_dssp             HHHHHHHHHHH-------HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGE-E
T ss_pred             HHHHHHHHHHh-------hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC----Cccc-e
Confidence            35678777552       234689999999999998754433  35899999999999999998865322    2344 6


Q ss_pred             EEEecCCCcc
Q 026812          216 FFCVPLQVIT  225 (232)
Q Consensus       216 ~~~vgLQdF~  225 (232)
                      ++.-..+++-
T Consensus       112 l~~Gd~~e~l  121 (214)
T d2cl5a1         112 ILNGASQDLI  121 (214)
T ss_dssp             EEESCHHHHG
T ss_pred             eeeccccccc
Confidence            6665555543

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.02  E-value=0.002  Score=55.76  Aligned_cols=74  Identities=22%  Similarity=0.139  Sum_probs=56.7

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ||.|.-.+++.|...-...|..+....     .....+||=+|.|-|-+++.+|.+. ..+||+||.++..++.+++++.
T Consensus        60 ~LDg~~q~~~~De~~YhE~l~h~pl~~-----~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~  134 (295)
T d1inla_          60 ALDGITMTTEKDEFMYHEMLAHVPMFL-----HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK  134 (295)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHHH-----SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             EECCEEEEecCchhhhhhhhcchhHhh-----CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence            677877888888655555666553211     1235799999999999999877654 5799999999999999999874

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0042  Score=53.22  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|.-.+++.|..--...|..+.....     ....+||=+|.|-|.+++.+|... ..+||+||.++..++.|++++.
T Consensus        49 ~lDg~~q~~~~de~~Yhe~l~h~~l~~~-----~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~  123 (285)
T d2o07a1          49 VLDGVIQCTERDEFSYQEMIANLPLCSH-----PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP  123 (285)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHTTS-----SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             EECCcEEEecCCHHHHHHHhccHhhhhC-----cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhch
Confidence            4556666777886555566666543211     344689999999999999976543 6899999999999999999873

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.78  E-value=0.0036  Score=53.27  Aligned_cols=92  Identities=13%  Similarity=0.080  Sum_probs=61.7

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      +|.|.-.++..|-..-..+|..+.....     ....+||-+|.|-|.+++.+|.+. ..+||+||.++..++.|++++.
T Consensus        46 ~LDg~~q~~~~de~~Yhe~l~h~~l~~~-----~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~  120 (274)
T d1iy9a_          46 FLDGMVMTSEKDEFVYHEMVAHVPLFTH-----PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (274)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHHHS-----SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             EECCceeeecCchhhchhhhccchhhcc-----CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhCh
Confidence            5666666777775444556665433111     234699999999999999877543 5799999999999999999873


Q ss_pred             CCCCCCCCCCCcceEEEecC
Q 026812          202 PENHMAPDMHKATNFFCVPL  221 (232)
Q Consensus       202 ~~~~~~~~~~rv~n~~~vgL  221 (232)
                      .... ..+..|+ +++...-
T Consensus       121 ~~~~-~~~d~r~-~i~~~D~  138 (274)
T d1iy9a_         121 SIAG-KLDDPRV-DVQVDDG  138 (274)
T ss_dssp             HHHT-TTTSTTE-EEEESCS
T ss_pred             hhcc-cccCCCe-EEEechH
Confidence            2110 1123555 5555443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.68  E-value=0.004  Score=54.38  Aligned_cols=75  Identities=24%  Similarity=0.215  Sum_probs=58.0

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ||.|--.+++.|-..-...|..+.....     ....+||-+|.|-|.+.+.+|.+. ..+||+||.++..++.+++++.
T Consensus        77 ~LDg~~q~~e~de~~YhE~l~h~pl~~~-----~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~  151 (312)
T d2b2ca1          77 VLDGIVQATERDEFSYQEMLAHLPMFAH-----PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLP  151 (312)
T ss_dssp             EETTEEEEESSSSSHHHHHHHHHHHHHS-----SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCT
T ss_pred             EECCceeeecccHHHHHHHhhhHHHhcC-----CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhch
Confidence            6777777888886666677776543111     234689999999999999876543 4799999999999999999985


Q ss_pred             C
Q 026812          202 P  202 (232)
Q Consensus       202 ~  202 (232)
                      .
T Consensus       152 ~  152 (312)
T d2b2ca1         152 G  152 (312)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=95.48  E-value=0.0068  Score=52.38  Aligned_cols=63  Identities=6%  Similarity=-0.062  Sum_probs=48.6

Q ss_pred             ceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       158 ~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      ..++||+.||+|-+|...+.....+|..||.++..++.|++|+.....   +..++ +|++...-+|
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l---~~~~~-~~i~~d~~~~  207 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL---DMANH-QLVVMDVFDY  207 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC---CCTTE-EEEESCHHHH
T ss_pred             CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcc---cCcce-EEEEccHHHH
Confidence            358999999999999987766778999999999999999999854211   11233 6777776544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0078  Score=49.44  Aligned_cols=58  Identities=21%  Similarity=0.043  Sum_probs=46.4

Q ss_pred             HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCC
Q 026812          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPE  203 (232)
Q Consensus       139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~  203 (232)
                      -.||..|-..       .+..+||++|+|+|--|..|+.-+  -.+|..+|.++.+.+.|++++...
T Consensus        48 g~lL~~L~~~-------~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a  107 (219)
T d2avda1          48 AQLLANLARL-------IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA  107 (219)
T ss_dssp             HHHHHHHHHH-------TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHc-------cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc
Confidence            6777776542       234689999999999999866544  259999999999999999998653

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.02  E-value=0.013  Score=50.08  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=54.3

Q ss_pred             cccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhC
Q 026812          123 VLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       123 MLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ||.|--.+++.|-..-...|..+.....     ....+||=+|.|-|.+.+.+|... ..+||+||.++..++.+++++.
T Consensus        51 ~LDg~~q~~e~de~~Yhe~l~h~~~~~~-----~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~  125 (290)
T d1xj5a_          51 VLDGVIQLTERDECAYQEMITHLPLCSI-----PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFP  125 (290)
T ss_dssp             EETTEEEEETTTHHHHHHHHHHHHHTTS-----SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             EECCeEeeeccchhHHHHHHhhHHHhhC-----CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhch
Confidence            5566566777775444555555543211     345689999999999999866543 4799999999999999999873

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=94.41  E-value=0.0085  Score=49.58  Aligned_cols=74  Identities=15%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             HHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceE
Q 026812          139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF  216 (232)
Q Consensus       139 ~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~  216 (232)
                      -.||..|...       .+..+||++|+++|--|..|..-+  -.+|..+|.++.+.+.|++++.....    .++| ++
T Consensus        48 g~~L~~L~~~-------~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~----~~~i-~~  115 (227)
T d1susa1          48 GQFLSMLLKL-------INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV----DHKI-DF  115 (227)
T ss_dssp             HHHHHHHHHH-------HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC----GGGE-EE
T ss_pred             HHHHHHHHHh-------cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc----ccce-ee
Confidence            4677776542       234689999999999998755433  35999999999999999999976432    2455 56


Q ss_pred             EEecCCCc
Q 026812          217 FCVPLQVI  224 (232)
Q Consensus       217 ~~vgLQdF  224 (232)
                      .+-...++
T Consensus       116 ~~g~a~~~  123 (227)
T d1susa1         116 REGPALPV  123 (227)
T ss_dssp             EESCHHHH
T ss_pred             eehHHHHH
Confidence            65555443

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=93.81  E-value=0.025  Score=47.85  Aligned_cols=41  Identities=22%  Similarity=0.205  Sum_probs=34.6

Q ss_pred             eeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHh
Q 026812          159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL  200 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l  200 (232)
                      .+||||=||.|+.+- +|+..+.+|++||.++.....+++.+
T Consensus        90 ~~VlD~TaGlG~Da~-vlA~~G~~V~~iEr~p~l~~ll~d~l  130 (250)
T d2oyra1          90 PDVVDATAGLGRDAF-VLASVGCRVRMLERNPVVAALLDDGL  130 (250)
T ss_dssp             CCEEETTCTTCHHHH-HHHHHTCCEEEEECCHHHHHHHHHHH
T ss_pred             CEEEECCCcccHHHH-HHHhCCCEEEEEccCHHHHHHHHHHH
Confidence            489999999999996 57888889999999998776666544

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.72  E-value=0.0065  Score=47.40  Aligned_cols=38  Identities=13%  Similarity=-0.065  Sum_probs=28.7

Q ss_pred             cceeeeccCCccccchHHHHhhcc--CeeEEecCcHHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLD  194 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f--~~VDLVEPv~~Fle  194 (232)
                      ...++||.|||+|.....++....  ..|..+|.++..+.
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~   58 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD   58 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh
Confidence            346899999999998877665544  46889999876543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.53  E-value=0.12  Score=45.75  Aligned_cols=47  Identities=26%  Similarity=0.369  Sum_probs=38.6

Q ss_pred             CcceeeeccCCccccchHHHHhhc---cCeeEEecCcHHHHHHHHHHhCC
Q 026812          156 NQHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       156 ~~~~rALDcGAGIGRVTk~lLl~~---f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .+....+||||=+|-.+..|+...   +.+|-++||++...+.+++++..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            345689999999998887765432   46999999999999999988754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=91.53  E-value=0.15  Score=42.36  Aligned_cols=104  Identities=17%  Similarity=0.294  Sum_probs=67.3

Q ss_pred             hhhhhhhhcccCCccchhccccCCCcccccchhhHHHHHHHHhcCCCCCcCCCcceeeeccCCccccchHHHHhhc-cCe
Q 026812          104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRY-FNE  182 (232)
Q Consensus       104 ~~Y~~a~~YWe~veaTvdGMLGGf~~vs~~Di~gS~~FL~~L~~~~~~~~~~~~~~rALDcGAGIGRVTk~lLl~~-f~~  182 (232)
                      ..|.+-..-|+.   ..|     .-.++..+-.-.+-|++++......+  .....+++|+|+|-|==+..|-+-. -.+
T Consensus        27 ~~y~~lL~~wN~---~~N-----Lts~~~~~~i~~rHi~DSl~~~~~~~--~~~~~~ilDiGSGaGfPGi~laI~~p~~~   96 (239)
T d1xdza_          27 ELYYDMLVEWNE---KIN-----LTSITEKKEVYLKHFYDSITAAFYVD--FNQVNTICDVGAGAGFPSLPIKICFPHLH   96 (239)
T ss_dssp             HHHHHHHHHHHH---HSC-----CCSCCSHHHHHHHTHHHHHGGGGTSC--GGGCCEEEEECSSSCTTHHHHHHHCTTCE
T ss_pred             HHHHHHHHHhcC---ceE-----EEecCCHHHHHHHhccchhhhhhhhc--ccCCCeEEeecCCCchHHHHHHHhCCCcc
Confidence            457778888875   444     44455555445678888885433321  1234589999999999887533221 258


Q ss_pred             eEEecCcHH---HHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccC
Q 026812          183 VDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQVITN  226 (232)
Q Consensus       183 VDLVEPv~~---Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~P  226 (232)
                      |+|||.+.+   |++.+...++-        .. ..+++.-.+++.+
T Consensus        97 v~Lves~~KK~~FL~~v~~~L~L--------~n-~~i~~~R~E~~~~  134 (239)
T d1xdza_          97 VTIVDSLNKRITFLEKLSEALQL--------EN-TTFCHDRAETFGQ  134 (239)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTC--------SS-EEEEESCHHHHTT
T ss_pred             ceeecchHHHHHHHHHHHHHhCC--------CC-cEEEeehhhhccc
Confidence            999999986   77777777644        12 2566776776654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=90.86  E-value=0.1  Score=43.51  Aligned_cols=45  Identities=9%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             cceeeeccCCccccchHHHHhhcc------CeeEEecCcHHHHHHHHHHhC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVSHFLDAARESLA  201 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f------~~VDLVEPv~~Fle~Are~l~  201 (232)
                      ...++||.+||+|.+...++..+.      .++-.+|.++..+..|+.++.
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~  167 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD  167 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH
Confidence            456899999999998877554321      268889999999999987654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.91  E-value=0.46  Score=37.44  Aligned_cols=57  Identities=14%  Similarity=-0.011  Sum_probs=44.3

Q ss_pred             cceeeeccCCccccchHHHHhhccCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCc
Q 026812          157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVI  224 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF  224 (232)
                      +...++||.+|-|--|+.+|.+ ..+|-++|..+..+..|++.. .        .++ .+++..+.++
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~-~--------~~~-~~~~~~f~~~   74 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH-L--------PGL-TVVQGNFRHL   74 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC-C--------TTE-EEEESCGGGH
T ss_pred             CCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc-c--------cce-eEeehHHHHH
Confidence            3458999999999999998776 569999999999999988742 1        333 6777666554

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.52  E-value=0.14  Score=41.93  Aligned_cols=30  Identities=17%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             eeeeccCCccccchHHHHhhcc-CeeEEecC
Q 026812          159 LVALDCGSGIGRITKNLLIRYF-NEVDLLEP  188 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~f-~~VDLVEP  188 (232)
                      .++||+|+|.|.++..++...= -++.+.|.
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl  112 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR  112 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecC
Confidence            5799999999999999666541 47888886

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.75  E-value=0.44  Score=37.19  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=30.7

Q ss_pred             CcceeeeccCCcccc----chHHHHhhcc------CeeEEecCcHHHHHHHHH
Q 026812          156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARE  198 (232)
Q Consensus       156 ~~~~rALDcGAGIGR----VTk~lLl~~f------~~VDLVEPv~~Fle~Are  198 (232)
                      .+..||+++|||+|.    ++.- |....      -+|.+.|.++.+++.|++
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~-l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAIT-LADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHH-HHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEEeCCCCchhHHHHHHH-HHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            345799999999998    3332 22111      168999999999999985

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=85.85  E-value=0.47  Score=40.14  Aligned_cols=20  Identities=20%  Similarity=0.102  Sum_probs=16.2

Q ss_pred             cceeeeccCCccccchHHHH
Q 026812          157 QHLVALDCGSGIGRITKNLL  176 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lL  176 (232)
                      +..+|+|+|||.|--|..+.
T Consensus        66 ~~~~vvDlG~~pGgws~~~a   85 (257)
T d2p41a1          66 PEGKVVDLGCGRGGWSYYCG   85 (257)
T ss_dssp             CCEEEEEETCTTSHHHHHHH
T ss_pred             CCCeEEEecCCCChHHHHHH
Confidence            34689999999999997643

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=85.12  E-value=0.8  Score=39.13  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             cceeeeccCCccccchHHHHhhc------cC--eeEEecCcHHHHHHHHHHhCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY------FN--EVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~------f~--~VDLVEPv~~Fle~Are~l~~  202 (232)
                      ....++++|||.|+.++.+|.-.      ++  .+-+||+++.+-+.-++.+..
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            34689999999999999876542      12  478999999988887877754

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.42  E-value=0.54  Score=41.09  Aligned_cols=44  Identities=16%  Similarity=0.089  Sum_probs=37.7

Q ss_pred             eeeeccCCccccchHHHHhhc-cCeeEEecCcHHHHHHHHHHhCC
Q 026812          159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAP  202 (232)
Q Consensus       159 ~rALDcGAGIGRVTk~lLl~~-f~~VDLVEPv~~Fle~Are~l~~  202 (232)
                      .++||+.||+|--+...+... .++|.++|.++..++.+++|+..
T Consensus        47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~l   91 (375)
T d2dula1          47 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML   91 (375)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHh
Confidence            589999999999998755543 57999999999999999998743

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.27  E-value=1.2  Score=37.07  Aligned_cols=65  Identities=11%  Similarity=0.028  Sum_probs=45.9

Q ss_pred             cceeeeccCCccccchHHHHhhc--cCeeEEecCcHHHHHHHHHHhCCCCCCCCCCCCcceEEEecCCCccCC
Q 026812          157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQVITNI  227 (232)
Q Consensus       157 ~~~rALDcGAGIGRVTk~lLl~~--f~~VDLVEPv~~Fle~Are~l~~~~~~~~~~~rv~n~~~vgLQdF~Pe  227 (232)
                      +..+|||..||+|.=|.++..-+  -.+|.++|.+++=++.+++++....      -....+++....++.+.
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g------~~~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG------VSCCELAEEDFLAVSPS  160 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT------CCSEEEEECCGGGSCTT
T ss_pred             ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC------ccceeeeehhhhhhccc
Confidence            34689999999999998753222  3579999999999999999886621      11124556556555543