Citrus Sinensis ID: 026813

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYLH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYgskflsdgqpgtaqnvdkSTSLARKVFRLFKFVNdlhalispvpqgtplplvllgksknaLLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLlqlapkkvtprvtgaFGFVTSLISCYQLIFGWYLH
Flexible Loop (DISEMBL)
mstldatrAELALVVLYLNKAEARDKICRAIQYGskflsdgqpgtaqNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKelkdsdkhknEQYQAKLKKSNERSLALVKSAMDIVVAVGLlqlapkkvtprVTGAFGFVTSLISCYQLIFGWYLH
Low Complexity Region (SEG)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMkklekelkdsdkhkNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYLH
Disordered region (IsUnstruct)
********AELALVVLYLNKAEARDKICRAIQYGSKFLS**************SLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELG***********************************LALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYL*
Disordered Region (DISOPRED)
**********LALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGR*************************KLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYLH
Disordered Region (DISEMBL)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDG**********STSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYLH
Disordered Region (DISPRO)
**TLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYLH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q9LQ73	235	Peroxisomal membrane prot	yes	no	0.974	0.961	0.862	1e-115
O80845	236	Peroxisomal membrane prot	no	no	0.969	0.953	0.866	1e-114
Q84JW1	231	Peroxisomal membrane prot	no	no	0.956	0.961	0.831	1e-108
Q10SM7	237	Peroxisomal membrane prot	yes	no	0.965	0.945	0.803	1e-104
Q5VRJ8	233	Peroxisomal membrane prot	no	no	0.974	0.969	0.769	1e-102
Q7XU74	222	Peroxisomal membrane prot	no	no	0.853	0.891	0.255	2e-09
Q01IH3	222	Peroxisomal membrane prot	N/A	no	0.853	0.891	0.255	2e-09
Q10MN3	254	Peroxisomal membrane prot	no	no	0.616	0.562	0.279	2e-06
Q10MN2	242	Peroxisomal membrane prot	no	no	0.581	0.557	0.314	3e-06
A2XFQ8	242	Peroxisomal membrane prot	N/A	no	0.581	0.557	0.314	3e-06

>sp|Q9LQ73|PX11C_ARATH Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1

 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/226 (86%), Positives = 218/226 (96%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           +LGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+NEQY+AK++KSNER
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQL+
Sbjct: 181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLL 226

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.
Arabidopsis thaliana (taxid: 3702)

>sp|O80845|PX11D_ARATH Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 217/225 (96%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERS 181
           LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK+ +K+++E Y+AKLKKSNERS
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERS 182

Query: 182 LALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           LAL+KSAMDIVVA GLLQLAP K+TPRVTGAFGF+TS+ISCYQL+
Sbjct: 183 LALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLL 227

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JW1|PX11E_ARATH Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/226 (83%), Positives = 210/226 (92%), Gaps = 4/226 (1%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct: 1   MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct: 61  RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           LLGRISLFCW+GSSVC++ VE+GELGRLS+SMKK+EKELK  D    E Y+AKL+KSN+R
Sbjct: 121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKADD----ELYRAKLQKSNDR 176

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           +LAL+KS+MDI+VA+GLLQLAPK ++PRVTGAFGF TSLISCYQL+
Sbjct: 177 TLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLL 222

Involved in peroxisomal proliferation. Promotes peroxisomal duplication, aggregation or elongation without fission.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10SM7|PX111_ORYSJ Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/224 (80%), Positives = 208/224 (92%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVF
Sbjct: 1   MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RL K+VNDLH LISP  +GTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKER +
Sbjct: 61  RLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTD 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
            + RISL+CWM SSVC+ LVELGEL RLS SM+KL +EL+D+DK++N+QY++K+K+S+ER
Sbjct: 121 RIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQ 224
            LALVK+AMD+VVAVGLLQL+PKK+TPRVTGAFGFVTSLISCYQ
Sbjct: 181 LLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQ 224

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5VRJ8|PX115_ORYSJ Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/226 (76%), Positives = 206/226 (91%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVF
Sbjct: 1   MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISP  +GTPLPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYKNKERAE
Sbjct: 61  RLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
            L +I+ +C++GS+ C++++E+ EL RLS SMKKLEKELK  +  KNEQYQ KL+K NER
Sbjct: 121 FLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKNEQYQMKLQKCNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
            LAL+KS++DIVVA+GLLQLAPKKVTPRVTGAFGF +SLI+CYQL+
Sbjct: 181 RLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLL 226

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XU74|PX114_ORYSJ Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. japonica GN=PEX11-4 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 29/227 (12%)

Query: 14  VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
           +V++L K +  DK+ +  QY SK         S G  G A+N + S  L+RK FR  +F+
Sbjct: 10  LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69

Query: 67  NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
             L+ L     +  P     L    NA    + F D   WL R G+      A L  R+S
Sbjct: 70  TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120

Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVK 186
                G SV        +L  +   +++  K L++  K K+++ +        R +A   
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDKDKEVKKIRMDRVMRLMATAA 180

Query: 187 SAMDIVVAVGLLQLAP---KKVTPRVTGAFGFVTSLISCYQLIFGWY 230
           +  D+V+ +  ++  P     VT  ++G       L+S +    GWY
Sbjct: 181 NVADLVIGIADIEPNPFCNHAVTLGISG-------LVSAWA---GWY 217

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01IH3|PX114_ORYSI Peroxisomal membrane protein 11-4 OS=Oryza sativa subsp. indica GN=PEX11-4 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 29/227 (12%)

Query: 14  VVLYLNKAEARDKICRAIQYGSKFL-------SDGQPGTAQNVDKSTSLARKVFRLFKFV 66
           +V++L K +  DK+ +  QY SK         S G  G A+N + S  L+RK FR  +F+
Sbjct: 10  LVVFLAKRDGIDKLVKTFQYVSKLAHWAAESSSPGLAGRAKNWETSAGLSRKAFRTGRFL 69

Query: 67  NDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRIS 126
             L+ L     +  P     L    NA    + F D   WL R G+      A L  R+S
Sbjct: 70  TGLNGL-----RRAPGEFGALAVLANAGEMVYFFFDHFTWLSRVGVLD----AWLARRMS 120

Query: 127 LFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERSLALVK 186
                G SV        +L  +   +++  K L++  K K+++ +        R +A   
Sbjct: 121 FISAFGESVGYVFFIAMDLIMIRRGLRQERKLLREGGKDKDKEVKKIRMDRVMRLMATAA 180

Query: 187 SAMDIVVAVGLLQLAP---KKVTPRVTGAFGFVTSLISCYQLIFGWY 230
           +  D+V+ +  ++  P     VT  ++G       L+S +    GWY
Sbjct: 181 NVADLVIGIADIEPNPFCNHAVTLGISG-------LVSAWA---GWY 217

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10MN3|PX112_ORYSJ Peroxisomal membrane protein 11-2 OS=Oryza sativa subsp. japonica GN=PEX11-2 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL----ISPVPQGTPLPLVLLGKSKNALLSTFLFLD 102
           ++ + S  L+RK FRL KFV  ++AL      P P   PL LVLL      +   + FL+
Sbjct: 74  RSFESSVGLSRKAFRLGKFVQSINALRAAAYHPHPHVHPL-LVLLAYGGQGV---YNFLE 129

Query: 103 QVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDS 162
           Q  WL ++G+   +     L RI ++  + + V S  ++L E+  L   +   E  L++ 
Sbjct: 130 QFAWLAKAGLLPARLLPRRLHRIGVWAQLLAHVGSIAIKLEEVAELECGV---EARLEEG 186

Query: 163 DKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVG 196
              ++E  +   +K   + ++LV+  +D  + VG
Sbjct: 187 CGEESEVVRTLSRKLLLKLMSLVQDMVDSAMTVG 220

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10MN2|PX113_ORYSJ Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. japonica GN=PEX11-3 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 21/156 (13%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
           ++ + S  L+RK FRL KFV +++AL   P P   P  + LL      +   + FL+Q V
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121

Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE--LK 160
           WL ++G+      A LL R+  L  W  +   V S  ++L E+G+L +S+K   KE   +
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCRE 177

Query: 161 DSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVG 196
           +SD  +  + +  LK+     +++V+   D V+A+G
Sbjct: 178 ESDVVRTLRVKLLLKR-----MSVVQDVADAVMALG 208

Involved in peroxisomal proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XFQ8|PX113_ORYSI Peroxisomal membrane protein 11-3 OS=Oryza sativa subsp. indica GN=PEX11-3 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 21/156 (13%)

Query: 47  QNVDKSTSLARKVFRLFKFVNDLHAL-ISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVV 105
           ++ + S  L+RK FRL KFV +++AL   P P   P  + LL      +   + FL+Q V
Sbjct: 68  KSFESSVGLSRKAFRLGKFVQNVNALRAHPHP---PPAVALLAYGGEGV---YYFLEQFV 121

Query: 106 WLGRSGIYKNKERAELLGRIS-LFCW--MGSSVCSTLVELGELGRLSTSMKKLEKE--LK 160
           WL ++G+      A LL R+  L  W  +   V S  ++L E+G+L +S+K   KE   +
Sbjct: 122 WLAKAGLLP----AHLLPRLQRLSAWAELLGYVGSITIKLEEIGKLESSVKMRLKEGCRE 177

Query: 161 DSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVG 196
           +SD  +  + +  LK+     +++V+   D V+A+G
Sbjct: 178 ESDVVRTLRVKLLLKR-----MSVVQDVADAVMALG 208

Involved in peroxisomal proliferation.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
224063967	235	predicted protein [Populus trichocarpa]	0.974	0.961	0.924	1e-118
255541462	235	peroxisomal biogenesis factor, putative	0.974	0.961	0.915	1e-118
224130140	235	predicted protein [Populus trichocarpa]	0.974	0.961	0.920	1e-118
225453744	235	PREDICTED: peroxisomal membrane protein	0.974	0.961	0.907	1e-117
297842942	235	peroxisomal biogenesis factor 11 family	0.974	0.961	0.880	1e-114
18378887	235	peroxisomal membrane protein 11C [Arabid	0.974	0.961	0.862	1e-113
297824623	236	peroxisomal biogenesis factor 11 family	0.969	0.953	0.866	1e-113
18406877	236	peroxisomal membrane protein 11D [Arabid	0.969	0.953	0.866	1e-113
56368447	235	putative peroxisomal membrane protein PE	0.974	0.961	0.858	1e-112
449432195	235	PREDICTED: peroxisomal membrane protein	0.974	0.961	0.849	1e-111

>gi|224063967|ref|XP_002301325.1| predicted protein [Populus trichocarpa] gi|118484040|gb|ABK93906.1| unknown [Populus trichocarpa] gi|222843051|gb|EEE80598.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/226 (92%), Positives = 219/226 (96%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELAL+VLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALIVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLH LISPV QGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER +
Sbjct: 61  RLFKFVNDLHGLISPVSQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERVD 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           L+GRISLFCWMGSS+C+TLVE+GELGRLS SMKKLEKELKD +KH NEQY+AKLKKSNER
Sbjct: 121 LIGRISLFCWMGSSICTTLVEVGELGRLSVSMKKLEKELKDGEKHHNEQYRAKLKKSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFG VTSLISCYQL+
Sbjct: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGVVTSLISCYQLL 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541462|ref|XP_002511795.1| peroxisomal biogenesis factor, putative [Ricinus communis] gi|223548975|gb|EEF50464.1| peroxisomal biogenesis factor, putative [Ricinus communis]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/226 (91%), Positives = 222/226 (98%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELAL+VLYLNKAEARDKICRAIQYGSKFLS+GQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALLVLYLNKAEARDKICRAIQYGSKFLSNGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RL KFVNDLHALISPV QGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERA+
Sbjct: 61  RLLKFVNDLHALISPVTQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAD 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           L+GRISL+CWMGSSVC+TLVE+GELGRLS S+KKLEKELK+SDKH+NEQY+AKL+KSNER
Sbjct: 121 LIGRISLYCWMGSSVCTTLVEIGELGRLSASLKKLEKELKNSDKHQNEQYRAKLQKSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLALVK+AMDIVVAVGLLQLAPKKV PRVTGAFGFVTSLISCYQL+
Sbjct: 181 SLALVKAAMDIVVAVGLLQLAPKKVNPRVTGAFGFVTSLISCYQLL 226

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130140|ref|XP_002320762.1| predicted protein [Populus trichocarpa] gi|118489542|gb|ABK96573.1| unknown [Populus trichocarpa x Populus deltoides] gi|222861535|gb|EEE99077.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/226 (92%), Positives = 219/226 (96%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQ GTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQAGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLH LISPVPQGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct: 61  RLFKFVNDLHGLISPVPQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERVE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           L+GRISLFCWMGSS+C+TLVE+GELGRLS SMKKLEKELK+ +K+ NEQY+AKLKKSNER
Sbjct: 121 LIGRISLFCWMGSSICTTLVEVGELGRLSASMKKLEKELKEGEKNHNEQYRAKLKKSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLALVKSAMDIVVAVGLLQLAPKKVTPRVTG FGFV+SLISCYQL+
Sbjct: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGGFGFVSSLISCYQLL 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453744|ref|XP_002273596.1| PREDICTED: peroxisomal membrane protein 11C isoform 2 [Vitis vinifera] gi|225453746|ref|XP_002273544.1| PREDICTED: peroxisomal membrane protein 11C isoform 1 [Vitis vinifera] gi|296089071|emb|CBI38774.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 205/226 (90%), Positives = 217/226 (96%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLDATRAEL LV+LYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLDATRAELGLVILYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISP PQGTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAE
Sbjct: 61  RLFKFVNDLHALISPAPQGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
            +GRISLFCWMGSS+C+TLVELGELGRLS SMKKLEKELK SDK++NEQY++KLKKSN R
Sbjct: 121 QIGRISLFCWMGSSICATLVELGELGRLSASMKKLEKELKGSDKYQNEQYRSKLKKSNAR 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLALVK+ MD VVAVGLLQLAPKKVTPRVTG FGFV+SLISCYQL+
Sbjct: 181 SLALVKAVMDTVVAVGLLQLAPKKVTPRVTGGFGFVSSLISCYQLL 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842942|ref|XP_002889352.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335194|gb|EFH65611.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/226 (88%), Positives = 218/226 (96%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF
Sbjct: 1   MSTLETTRAELGLVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           LLGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+NEQY+AKL+KSNER
Sbjct: 121 LLGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKLEKSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQL+
Sbjct: 181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLL 226

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18378887|ref|NP_563636.1| peroxisomal membrane protein 11C [Arabidopsis thaliana] gi|75180079|sp|Q9LQ73.1|PX11C_ARATH RecName: Full=Peroxisomal membrane protein 11C; AltName: Full=Peroxin-11C; Short=AtPEX11c gi|8671852|gb|AAF78415.1|AC009273_21 Contains similarity to an unknown protein F4I18.28 gi|7486466 from Arabidopsis thaliana BAC F4I18 gb|AC004665. ESTs gb|F14309, gb|AI998750, gb|995247, gb|T14224 and gb|AI995247 come from this gene [Arabidopsis thaliana] gi|12083290|gb|AAG48804.1|AF332441_1 unknown protein [Arabidopsis thaliana] gi|17381255|gb|AAL36046.1| At1g01820/T1N6_18 [Arabidopsis thaliana] gi|20453367|gb|AAM19922.1| At1g01820/T1N6_18 [Arabidopsis thaliana] gi|21555588|gb|AAM63892.1| unknown [Arabidopsis thaliana] gi|57157092|dbj|BAD83578.1| unnamed protein product [Arabidopsis thaliana] gi|332189218|gb|AEE27339.1| peroxisomal membrane protein 11C [Arabidopsis thaliana]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/226 (86%), Positives = 218/226 (96%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           +LGRISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+NEQY+AK++KSNER
Sbjct: 121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQL+
Sbjct: 181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLL 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297824623|ref|XP_002880194.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata] gi|297326033|gb|EFH56453.1| peroxisomal biogenesis factor 11 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 218/225 (96%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERS 181
           LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK  +K+++E+Y+AKLK+SNERS
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEIGRLSSSMKKIEKGLKHGNKYQDEEYRAKLKQSNERS 182

Query: 182 LALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           LAL+KSAMDIVVA GLLQLAPKK+TPRVTGAFGF+TS+ISCYQL+
Sbjct: 183 LALIKSAMDIVVAAGLLQLAPKKITPRVTGAFGFITSIISCYQLL 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406877|ref|NP_566055.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|30690116|ref|NP_850441.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|79324919|ref|NP_001031544.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|75099949|sp|O80845.2|PX11D_ARATH RecName: Full=Peroxisomal membrane protein 11D; AltName: Full=Peroxin-11D; Short=AtPEX11d gi|15450880|gb|AAK96711.1| Unknown protein [Arabidopsis thaliana] gi|20197204|gb|AAC28551.2| expressed protein [Arabidopsis thaliana] gi|21537163|gb|AAM61504.1| unknown [Arabidopsis thaliana] gi|330255500|gb|AEC10594.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|330255501|gb|AEC10595.1| peroxisomal membrane protein 11D [Arabidopsis thaliana] gi|330255502|gb|AEC10596.1| peroxisomal membrane protein 11D [Arabidopsis thaliana]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/225 (86%), Positives = 217/225 (96%)

Query: 2   STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
           +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct: 3   TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query: 62  LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
           LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct: 63  LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query: 122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNERS 181
           LGRISLFCWMGSSVC+TLVE+GE+GRLS+SMKK+EK LK+ +K+++E Y+AKLKKSNERS
Sbjct: 123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERS 182

Query: 182 LALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           LAL+KSAMDIVVA GLLQLAP K+TPRVTGAFGF+TS+ISCYQL+
Sbjct: 183 LALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLL 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56368447|emb|CAD58675.1| putative peroxisomal membrane protein PEX11-1 [Arabidopsis thaliana]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/226 (85%), Positives = 217/226 (96%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct: 1   MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct: 61  RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           +LG ISLFCWMGSSVC++LVE+GELGRLS S+KKLEKE+ + DKH+NEQY+AK++KSNER
Sbjct: 121 ILGLISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQL+
Sbjct: 181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLL 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432195|ref|XP_004133885.1| PREDICTED: peroxisomal membrane protein 11D-like [Cucumis sativus]

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/226 (84%), Positives = 216/226 (95%)

Query: 1   MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
           MSTLD TR ELALVVLYLNKAEARDKICRAIQYGSKFLS+G+PGTAQNVD+ST+LARKVF
Sbjct: 1   MSTLDVTRTELALVVLYLNKAEARDKICRAIQYGSKFLSNGEPGTAQNVDRSTALARKVF 60

Query: 61  RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           RL KFVNDLH LISP PQGTPLPLVLLGK KNALLSTFLFLDQ+VWL R+GIYKNKERAE
Sbjct: 61  RLCKFVNDLHGLISPTPQGTPLPLVLLGKCKNALLSTFLFLDQIVWLSRTGIYKNKERAE 120

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELKDSDKHKNEQYQAKLKKSNER 180
           L+GRISLFCWMGSS+CSTLVELGELGRLS++ KKLEK+LK+ +K+++E+Y AK+K+SNER
Sbjct: 121 LIGRISLFCWMGSSICSTLVELGELGRLSSARKKLEKDLKNKNKYEDEKYCAKVKQSNER 180

Query: 181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
           SLAL+K+AMD+VVA+GLLQLAPKKVTPRVTGAFGFVTSLISCYQL+
Sbjct: 181 SLALIKAAMDVVVAIGLLQLAPKKVTPRVTGAFGFVTSLISCYQLL 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2050694	236	PEX11D "AT2G45740" [Arabidopsi	0.969	0.953	0.835	8.4e-97
TAIR|locus:2198150	235	PEX11C "AT1G01820" [Arabidopsi	0.974	0.961	0.823	5.9e-96
TAIR|locus:2101012	231	PEX11E "peroxin 11E" [Arabidop	0.956	0.961	0.796	3e-92
TAIR|locus:2202430	248	PEX11A "AT1G47750" [Arabidopsi	0.875	0.818	0.248	3.3e-07
FB|FBgn0034058	241	Pex11 "Peroxin 11" [Drosophila	0.879	0.846	0.263	1.8e-05
DICTYBASE|DDB_G0289623	254	pex11 "peroxisomal biogenesis	0.241	0.220	0.310	2.3e-05
ASPGD|ASPL0000048457	235	pexK [Emericella nidulans (tax	0.875	0.863	0.259	7.1e-05

TAIR|locus:2050694 PEX11D "AT2G45740" [Arabidopsis thaliana (taxid:3702)]

 Score = 962 (343.7 bits), Expect = 8.4e-97, P = 8.4e-97
 Identities = 188/225 (83%), Positives = 205/225 (91%)

Query:     2 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFR 61
             +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFR
Sbjct:     3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFR 62

Query:    62 LFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAEL 121
             LFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAEL
Sbjct:    63 LFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAEL 122

Query:   122 LGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNERS 181
             LGRISLFCWMGSSVC+TLVE+GE+GRLS+SM              +E Y+AKLKKSNERS
Sbjct:   123 LGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNERS 182

Query:   182 LALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
             LAL+KSAMDIVVA GLLQLAP K+TPRVTGAFGF+TS+ISCYQL+
Sbjct:   183 LALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLL 227

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

TAIR|locus:2198150 PEX11C "AT1G01820" [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 186/226 (82%), Positives = 206/226 (91%)

Query:     1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
             MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVF
Sbjct:     1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVF 60

Query:    61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
             RLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE
Sbjct:    61 RLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAE 120

Query:   121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNER 180
             +LGRISLFCWMGSSVC++LVE+GELGRLS S+              NEQY+AK++KSNER
Sbjct:   121 ILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNER 180

Query:   181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
             SLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQL+
Sbjct:   181 SLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLL 226

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2101012 PEX11E "peroxin 11E" [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 180/226 (79%), Positives = 202/226 (89%)

Query:     1 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVF 60
             M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVF
Sbjct:     1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVF 60

Query:    61 RLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
             RLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER E
Sbjct:    61 RLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTE 120

Query:   121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNER 180
             LLGRISLFCW+GSSVC++ VE+GELGRLS+SM              +E Y+AKL+KSN+R
Sbjct:   121 LLGRISLFCWLGSSVCTSAVEIGELGRLSSSMKKMEKELKAD----DELYRAKLQKSNDR 176

Query:   181 SLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
             +LAL+KS+MDI+VA+GLLQLAPK ++PRVTGAFGF TSLISCYQL+
Sbjct:   177 TLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLL 222

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2202430 PEX11A "AT1G47750" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 56/225 (24%), Positives = 104/225 (46%)

Query:    17 YLNKAEARDKICRAIQYGSKFL--SDGQPGTA------QNVDKSTSLARKVFRLFKFVND 68
             YL+K +  DK+ +  +Y +K +  S   P T       ++ + S  ++RK FRL KFV D
Sbjct:    24 YLSKRDGVDKLLKISRYATKIILASSLIPETRSIIPRLKSFESSVGVSRKAFRLGKFVQD 83

Query:    69 LHALISPV-PQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISL 127
             ++AL S        L L+++      L   + F++Q +WL +SG+   K  ++ L +IS 
Sbjct:    84 INALRSSRWDSNHELVLLIIAYGGEGL---YYFVEQFIWLTKSGLIDAKH-SKWLQKISA 139

Query:   128 FCWMGSSVCSTLVELGELGRLST--SMXXXXXXXXXXXXXXNEQYQAKLKKSNERSLALV 185
             +  +   V S  +++ +L +L+   S                +    K+K   E+    V
Sbjct:   140 WAELVGYVGSVSIKIRDLRKLNDEESCVASTIEISVSRGLACDGEDEKMKMIKEKKTLKV 199

Query:   186 KSAMDIVVAVGLLQLAP----KKV--TPRVTGAFGFVTSLISCYQ 224
              S +  + A GL+ +A     K V   P V  + G  ++++S ++
Sbjct:   200 LSILQDL-ADGLMTIADIRDGKGVLSAPNVISSAGLFSAIVSTHK 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;IDA

GO:0016559 "peroxisome fission" evidence=IEA;ISS;IMP

GO:0007031 "peroxisome organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

FB|FBgn0034058 Pex11 "Peroxin 11" [Drosophila melanogaster (taxid:7227)]

 Score = 120 (47.3 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 60/228 (26%), Positives = 92/228 (40%)

Query:    19 NKAEARDKICRAIQYGSKFLSDG------QPGTAQN---VDKSTSLARKVFRLFKFVNDL 69
             N+A  RDKI R IQY S+ + D        P    N   V+   S  RK+ R  K V+  
Sbjct:     9 NQAGGRDKIARLIQYASRAMWDSLESANSNPALVDNFKTVEYILSTFRKLLRFGKCVDVF 68

Query:    70 HALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYK-NKER-AELLGRISL 127
             +  +  +        V L  SK +  S FLF D  +WL R+G+   N +R + +  +  L
Sbjct:    69 YGALKTIHHPDLNIRVTLTLSKLSQ-SLFLFADHFLWLARTGLTAVNAKRWSNIANKYWL 127

Query:   128 FCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNERSLALVKS 187
             F  +  ++C    E+  +  L  S               N       K+   +S  L++ 
Sbjct:   128 FSII-MNLCRDFYEILRVLDLHRSGSKSGISRCRIPASINSPED--FKRLALQSYVLMQG 184

Query:   188 AMDIVVA---------VGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI 226
               DIVV          + L  L    +TPR  G  G ++SL   + L+
Sbjct:   185 HKDIVVDTVKNACDFFIPLTALGYTSLTPRTIGLLGAISSLAGLWALL 232

GO:0007031 "peroxisome organization" evidence=ISS;IMP

GO:0016559 "peroxisome fission" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

DICTYBASE|DDB_G0289623 pex11 "peroxisomal biogenesis factor 11" [Dictyostelium discoideum (taxid:44689)]

 Score = 82 (33.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query:   168 EQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQL 225
             +Q+   +KK NE  L   K+  D+++A  LL++ P   +    G  G +++LI  YQ+
Sbjct:   196 DQFNEVIKKKNEIYLNCAKNGSDLIIASTLLKIYP--FSQGTIGISGIISALIGAYQM 251

GO:0016559 "peroxisome fission" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0007165 "signal transduction" evidence=ISS

GO:0007031 "peroxisome organization" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000048457 pexK [Emericella nidulans (taxid:162425)]

 Score = 115 (45.5 bits), Expect = 7.1e-05, P = 7.1e-05
 Identities = 59/227 (25%), Positives = 88/227 (38%)

Query:    11 LALVVLYLNKAEARDKICRAIQYGSKFLS-----DGQPGTA----QNVDKSTSLARKVFR 61
             LA  + ++     RDK+ R +QY S+F +       QP TA      V K     RK+ R
Sbjct:    12 LAHYLRFVATTVGRDKLLRTLQYFSRFYAWYLYRTNQPQTAIAPYNAVKKQFGTTRKILR 71

Query:    62 LFKFVNDLHALISPVPQGTPLPLVL--LGKSKNALLSTFLFLDQVVWLGRSGIYKNKERA 119
             + KF+  L A         P+  VL  L   +    + +L LD V  +   G ++     
Sbjct:    72 IGKFIEHLKAAALAADNKGPIDPVLRYLAIGRQLGYAGYLSLDTVTVVDVIG-FRKLASV 130

Query:   120 ELLGRISLFCWMGSSVCSTLVELGELGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNE 179
             + L   +   W     CS L  +  L RLS                       KL+K  E
Sbjct:   131 KRLQDSAYRAWFSGLACSVLAGVYTLWRLSQKQKTLDLKEGEGVVEAK-----KLEK--E 183

Query:   180 RSLA---LVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCY 223
             RS A   L+    D+ V V  + LA   +   + G  G ++SLI  +
Sbjct:   184 RSAARIQLISDLCDLTVPVSAIGLA--NLDDGLVGIAGTISSLIGVW 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      232       218   0.00091  112 3  11 22  0.48    32
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  149 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.13u 0.07s 17.20t   Elapsed:  00:00:01
  Total cpu time:  17.13u 0.07s 17.20t   Elapsed:  00:00:01
  Start:  Sat May 11 06:36:12 2013   End:  Sat May 11 06:36:13 2013

GO:0006631 "fatty acid metabolic process" evidence=IMP

GO:0016559 "peroxisome fission" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0005778 "peroxisomal membrane" evidence=IEA;ISO

GO:0019395 "fatty acid oxidation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10SM7	PX111_ORYSJ	No assigned EC number	0.8035	0.9655	0.9451	yes	no
Q5VRJ8	PX115_ORYSJ	No assigned EC number	0.7699	0.9741	0.9699	no	no
Q84JW1	PX11E_ARATH	No assigned EC number	0.8318	0.9568	0.9610	no	no
O80845	PX11D_ARATH	No assigned EC number	0.8666	0.9698	0.9533	no	no
Q9LQ73	PX11C_ARATH	No assigned EC number	0.8628	0.9741	0.9617	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam05648	225	pfam05648, PEX11, Peroxisomal biogenesis factor 11	5e-51

>gnl|CDD|218675 pfam05648, PEX11, Peroxisomal biogenesis factor 11 (PEX11)

 Score =  165 bits (419), Expect = 5e-51
 Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 15/227 (6%)

Query: 11  LALVVLYLNKAEARDKICRAIQYGSKFL---------SDGQPGTAQNVDKSTSLARKVFR 61
           L  +V +L+    RDK+ R +QY S+ L         S       +N++   SL+RK+ R
Sbjct: 1   LDHLVRFLDSTVGRDKLLRTLQYASRLLAWYLYRKGSSPELIARLKNLESQFSLSRKLLR 60

Query: 62  LFKFVNDLHALISPVPQGTPLPLV-LLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAE 120
           L KF+  L A         P P++ LL   +N   + +L  D ++WL + G+ K K  A+
Sbjct: 61  LGKFLEHLQAAAKYYDNKLPDPVLRLLAVLRNLGYALYLPFDHILWLAKIGLLKVKN-AK 119

Query: 121 LLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKEL--KDSDKHKNEQYQAKLKKSN 178
              RIS   W+   + S + +L EL +L    KKL+KE   +     + +  +  LKK  
Sbjct: 120 RWSRISSRFWLFGLLLSLVRDLRELRQLQEKEKKLKKEKDSEGESTSERKLLKKILKKRP 179

Query: 179 ERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQL 225
              L LVK+  D+ +A+  L +   +    + G  G ++SLI  YQL
Sbjct: 180 AALLDLVKNLCDLFIALNSLGIL--RFNDGLVGLAGTISSLIGIYQL 224

This family consists of several peroxisomal biogenesis factor 11 (PEX11) proteins from several eukaryotic species. The PEX11 peroxisomal membrane proteins promote peroxisome division in multiple eukaryotes. Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF05648	223	PEX11: Peroxisomal biogenesis factor 11 (PEX11)	100.0
KOG4186	233	consensus Peroxisomal biogenesis protein (peroxin)	100.0

>PF05648 PEX11: Peroxisomal biogenesis factor 11 (PEX11)

Probab=100.00  E-value=9.9e-46  Score=307.86  Aligned_cols=213  Identities=33%  Similarity=0.480  Sum_probs=178.6

Q ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHhcc----C--Cc---chHHhHHHhhhHHHHHHHhhhchHHHHHhhccCCCCCC
Q 026813           11 LALVVLYLNKAEARDKICRAIQYGSKFLSD----G--QP---GTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTP   81 (232)
Q Consensus        11 l~~~~~~l~t~~GRDK~~r~lQY~~kll~~----~--~~---~~~~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~~~~~~~   81 (232)
                      ++++++|+++++||||++|++||+++++++    .  .+   ...+++++++|++||+||+||++++++++.+....+++
T Consensus         1 l~~~~~~l~~~~GrDK~~r~~qy~~~~~~~~~~~~~~~~~~~~~~~~l~~~ls~aRk~~Rl~k~l~~l~~~~~~~~~~~~   80 (223)
T PF05648_consen    1 LDHFVRFLSSTDGRDKLLRLLQYSSKFLAWYLARRGPSKELSKRLKALSSQLSDARKLFRLGKFLPMLQAARKYIKKKPS   80 (223)
T ss_pred             CHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHhhhHHHHHHHHccHHHHHHHHHhhccCCc
Confidence            579999999999999999999999999987    1  22   23579999999999999999999999999988763334


Q ss_pred             chhH-HHHhhhhhHhHHHHhHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 026813           82 LPLV-LLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKLEKELK  160 (232)
Q Consensus        82 ~~~~-~l~~l~~~~~~~Y~~~D~i~wl~~~gi~~~~~~~~~~~~~s~~fW~~~l~~~iv~~l~~l~~l~~~~~~~~~~~~  160 (232)
                      +... .++.++++++++|+++||++|++++|+++++. .+++.++|++||+++++++++.+++++..+.+++++..++.+
T Consensus        81 d~~~~~l~~l~~~~~~~y~~~D~~~wl~~~gl~~~~~-~~~~~~~s~~~W~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~  159 (223)
T PF05648_consen   81 DQVLRILEILSNLFMFLYYLLDNLVWLSKLGLLPNKS-KKKWSRWSNRFWFASLVLSLVRDLRELRRLRQKERSLKKQLK  159 (223)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            4544 68888999999999999999999999999863 449999999999999999999999999877665554433222


Q ss_pred             hcchhcHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccCCCCccCccchhhhhHHHHHHHHHHhh
Q 026813          161 DSDKHKNEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLI  226 (232)
Q Consensus       161 ~~~~~~~e~~~~~~~~~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vG~~G~iSslig~y~~w  226 (232)
                      ++++.+++++++..+++++..+++++|+||+++|++++++.  ++||++||++|++||++|+|++|
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~l~lv~~~~D~~~~~~~l~~~--~~~~~~vg~~G~iSs~i~~~~~W  223 (223)
T PF05648_consen  160 EKDENEEEKLKKLRKERRALLLDLVKNLCDLIIAVHWLGWL--KVSDGVVGLLGLISSLIGLYQLW  223 (223)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCe--eCChhhHHHHHHHHHHHHHHHhC
Confidence            22222223345666778889999999999999999999764  69999999999999999999999

>KOG4186 consensus Peroxisomal biogenesis protein (peroxin) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-43  Score=291.13  Aligned_cols=217  Identities=35%  Similarity=0.468  Sum_probs=176.8

Q ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHhcc----CCcchH---HhHHHhhhHHHHHHHhhhchHHHHHhhcc--CCCCCC
Q 026813           11 LALVVLYLNKAEARDKICRAIQYGSKFLSD----GQPGTA---QNVDKSTSLARKVFRLFKFVNDLHALISP--VPQGTP   81 (232)
Q Consensus        11 l~~~~~~l~t~~GRDK~~r~lQY~~kll~~----~~~~~~---~~l~~~ls~aRk~~Rl~k~l~~~~~~~~~--~~~~~~   81 (232)
                      ++++++|+++++||||++|.+||+||++++    ++|+.+   +++|+++|.+||+||+||++++++++.++  .+.+++
T Consensus         1 ~d~lv~~ln~~~gRDKl~RalQY~akll~~~l~~~~p~~a~~~~kles~~S~~RK~~Rl~k~l~~~~~~~~~~~~~~~~~   80 (233)
T KOG4186|consen    1 LDHLVRFLNSAAGRDKLCRALQYVAKLLSWHLEAGSPELAKRLKKLESQLSLARKVLRLGKDLNMFQAALQYGLVPLGTD   80 (233)
T ss_pred             CcHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccCCCCCc
Confidence            478999999999999999999999999999    788875   57888999999999999999999999998  445544


Q ss_pred             chhHHHHhhhhhHhHHHHhHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHH
Q 026813           82 LPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSMKKL---EKE  158 (232)
Q Consensus        82 ~~~~~l~~l~~~~~~~Y~~~D~i~wl~~~gi~~~~~~~~~~~~~s~~fW~~~l~~~iv~~l~~l~~l~~~~~~~---~~~  158 (232)
                      .++..+.+++|+.+.+|+++||+.|++++|+++.+  .++|...+...|.+++..++.++++.+..+++...+.   .++
T Consensus        81 ~~lr~~~~l~n~~~~~Y~~~D~v~Wl~~~gi~~~~--~~~~~~~~~~~w~~sl~l~~~r~~~~~~~~~r~~~~~k~~~~~  158 (233)
T KOG4186|consen   81 NVLRLLGVLKNLAFALYLFLDHVLWLARTGIIPVK--SERWKISRISLWLLSLGLNLCRDMYEVFELQRLSSSIKKKTKS  158 (233)
T ss_pred             chhhHHHHHhHHHHHHHHHHHHHHHHHHhCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence            44556899999999999999999999999999987  3788999999999999998888888854443322211   111


Q ss_pred             hhhcchhcHHHHHHHHHH--HHHHHHHHHHHhHHHHHHhhcccCCCCccCccchhhhhHHHHHHHHHHhhhhhcC
Q 026813          159 LKDSDKHKNEQYQAKLKK--SNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLIFGWYL  231 (232)
Q Consensus       159 ~~~~~~~~~e~~~~~~~~--~~~~~l~lv~~~~D~~i~~~~l~~~~~~~~~~~vG~~G~iSslig~y~~w~~~~~  231 (232)
                      ..++++.+++.+++.+..  ++...++...|.||..+|...+++  ++++|++||++|++||++|+|++|+++++
T Consensus       159 ~~~~~e~~~~~l~~~~~~~~~~~l~l~~~~~~~~~~ipl~~L~~--~k~~p~~vGl~G~vSSilg~y~~~~~~~~  231 (233)
T KOG4186|consen  159 ISSGDEEDREKLQAQQLDQNHRLLLLSADFNAADSALPLGQLGP--GKLNPRQVGLFGLVSSILGMYQLWPPRPK  231 (233)
T ss_pred             CCCccHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhhccCc--CcCChhHhhHHHHHHHHHHHHHHcccccc
Confidence            111223333334433333  667799999999999999877766  58999999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00