Citrus Sinensis ID: 026823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MEALGLNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLSSKDTSEKVKSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNRR
Secondary Structure (PSIPRED)
ccccccccccHHHHcccccccccccccccccccccccHHHHcccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccEEEEEEccccccEEEcccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHcccccccccEEEcccccEEEcccccHHHHHHHccccEEEcccHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHcccccccHHccccccccEEEEEEccccccEHHEcHHHHccHHHHHHHHHHHHcccEEcccccccccccccHHHHHHcccccccEcEEEcccccEEEEccccHHHHHHHHHHHHEEcccHHHcccHHHHHHHcccc
Coil and Loop (DISEMBL)
mealglnmgfeetelrlglpgnrvlsegegarkrgfsetVDLKLNLSSKDTSEKVKSFQkeknplpratdppakppaktqvvgwppvrsfRKNMLGVVqkssgeesdmaggnnAAFVKVSmdgapylrkVDLRMYNTYQDLYHALGKmfssftigncgsqgmkdfmnesklmdllngsdyvptyedkdgdwmlvgdvpwgmfVESCKRLRIVkgteaiglapRAMEKCKNRR
Flexible Loop (DISEMBL)
mealglnmgfeetelrlglpgnrvlsegegarkrgfsetvdlklnlsskdtsekvksfqkeknplpratdppakppaktqvvgwppvrSFRKNMLGVVQKSsgeesdmaggnNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKgteaiglapramekcknrr
Low Complexity Region (SEG)
MEALGLNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLSSKDTSEKVKSFQKEKNplpratdppakppaKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNRR
Disordered region (IsUnstruct)
**********************************************************************************GWP****************************AAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLA***********
Disordered Region (DISOPRED)
*****LN*GFEETELRLGL*************************************************************************************************VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIG********************NGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIV********************
Disordered Region (DISEMBL)
MEALGLNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLSS*********************************VGWPPVRSFRKNMLGVVQ**********GGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRA********
Disordered Region (DISPRO)
******NMGFEETELRLGLPG*****************************************************PPAKTQVVGWPPVRSFRKNMLGVV*************NNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEALGLNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLSSKDTSEKVKSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
P13089	243	Auxin-induced protein AUX	yes	no	0.943	0.901	0.708	2e-86
O24407	236	Auxin-responsive protein	yes	no	0.918	0.902	0.632	3e-78
Q38832	228	Auxin-responsive protein	no	no	0.922	0.938	0.628	7e-77
P93830	229	Auxin-responsive protein	no	no	0.931	0.943	0.628	2e-74
Q38825	243	Auxin-responsive protein	no	no	0.965	0.921	0.636	3e-74
P0C132	277	Auxin-responsive protein	yes	no	0.978	0.819	0.512	2e-65
Q75GK0	233	Auxin-responsive protein	no	no	0.853	0.849	0.505	3e-57
Q38827	338	Auxin-responsive protein	no	no	0.818	0.562	0.541	8e-55
Q9ZSY8	305	Auxin-responsive protein	no	no	0.969	0.737	0.466	4e-54
Q38826	321	Auxin-responsive protein	no	no	0.948	0.685	0.435	1e-52

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  318 bits (814), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/247 (70%), Positives = 187/247 (75%), Gaps = 28/247 (11%)

Query: 8   MGFEETELRLGLPGNRVLSEGEGARKRGFSET-----------VDLKLNLSSK------- 49
           MGFEETELRLGLPGN   +E    RKRGFSET           VDL LNLSSK       
Sbjct: 1   MGFEETELRLGLPGNGG-TEEVLIRKRGFSETETGHEDESATTVDLMLNLSSKEAATTAA 59

Query: 50  ---DTSEKVKSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEES 106
              D ++K K+  KEK  LP     PAKPPAKTQVVGWPPVRSFRKNML V QKS GEES
Sbjct: 60  AAADPTDKHKTLPKEKTLLPAD---PAKPPAKTQVVGWPPVRSFRKNMLAV-QKSVGEES 115

Query: 107 DMAGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFM 166
           +     NA+FVKVSMDGAPYLRKVDL+MY +Y++L  +LGKMFSSFT GNC SQGMKDFM
Sbjct: 116 EKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFM 175

Query: 167 NESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAI--GLAPRA 224
           NESKL DLLN SDYVPTYEDKDGDWMLVGDVPW MFVESCKRLRI+KG EAI  GLAPRA
Sbjct: 176 NESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRA 235

Query: 225 MEKCKNR 231
           M KCKNR
Sbjct: 236 MAKCKNR 242

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Glycine max (taxid: 3847)

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 155/245 (63%), Positives = 179/245 (73%), Gaps = 32/245 (13%)

Query: 8   MGFEETELRLGLPGNRVLSE--GEGARKRGFSETVDLKLNLSSK--DTSEKVKSFQKEKN 63
           + FE TELRLGLPG     E  G+   KRGFSETVDLKLNLSS   D+  KV        
Sbjct: 2   INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVD------- 54

Query: 64  PLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNN---------- 113
            L    +   KPPAK QVVGWPPVRSFRKN++   + ++G+ ++   GN+          
Sbjct: 55  -LENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATE---GNDKTSGSSGATS 110

Query: 114 -------AAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFM 166
                   A+VKVSMDGAPYLRK+DL++Y TYQDL +AL KMFSSFTIGN G QGMKDFM
Sbjct: 111 SASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFM 170

Query: 167 NESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAME 226
           NESKL+DLLNGSDYVPTYEDKDGDWMLVGDVPW MFV+SCKR+RI+KG+EAIGLAPRA+E
Sbjct: 171 NESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALE 230

Query: 227 KCKNR 231
           KCKNR
Sbjct: 231 KCKNR 235

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  286 bits (733), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 149/237 (62%), Positives = 173/237 (72%), Gaps = 23/237 (9%)

Query: 8   MGFEETELRLGLPGNRVLSEGEG----ARKRGFSETVDLKLNLSSK---------DTSEK 54
           M  +ETEL LGLPG     E         KRGFSETVDLKLNL S          + + K
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query: 55  VKSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNA 114
            K+F K+          P+KPPAK QVVGWPPVR++RKN++   +    EE+  +GG   
Sbjct: 61  EKTFLKD----------PSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTV 110

Query: 115 AFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDL 174
           AFVKVSMDGAPYLRKVDL+MY +Y+DL  AL KMFSSFT+G+ G+QGM DFMNESK+MDL
Sbjct: 111 AFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDL 170

Query: 175 LNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           LN S+YVP+YEDKDGDWMLVGDVPW MFVESCKRLRI+KG+EAIGLAPRAMEK KNR
Sbjct: 171 LNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNR 227

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/234 (62%), Positives = 177/234 (75%), Gaps = 18/234 (7%)

Query: 6   LNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLSSK------DTSEKVKSF- 58
           + +   ETEL LGLPG   ++   G  KRGFSETVDLKLNL+++       T+  V +F 
Sbjct: 5   VELNLRETELCLGLPGGDTVAPVTG-NKRGFSETVDLKLNLNNEPANKEGSTTHDVVTFD 63

Query: 59  QKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVK 118
            KEK+  P+    PAKPPAK QVVGWPPVRS+RKN++   QKSSG      G   AAFVK
Sbjct: 64  SKEKSACPKD---PAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSG------GPEAAAFVK 114

Query: 119 VSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIG-NCGSQGMKDFMNESKLMDLLNG 177
           VSMDGAPYLRK+DLRMY +Y +L +AL  MFSSFT+G + G +GM DFMNE KLMDL+N 
Sbjct: 115 VSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNS 174

Query: 178 SDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
            DYVP+YEDKDGDWMLVGDVPW MFV++CKRLR++KG++AIGLAPRAMEKCK+R
Sbjct: 175 WDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  278 bits (710), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/245 (63%), Positives = 179/245 (73%), Gaps = 21/245 (8%)

Query: 4   LGLNMGFEETELRLGLPG--NRVLSEGEGA--RKRGFSETVDLKLNL-SSKDTS---EKV 55
           +G  M  + TEL LGLPG    V S  + A   KRGFSETVDL LNL S+K+ S   + V
Sbjct: 2   IGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNV 61

Query: 56  KSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMA------ 109
            +  KEK  L      P+KPPAK QVVGWPPVR++RKNM+   + SSG E   +      
Sbjct: 62  SAVPKEKTTL----KDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNF 117

Query: 110 --GGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMN 167
             G   A  VKVSMDGAPYLRKVDL+MY +YQDL  AL KMFSSFT+GN G+QGM DFMN
Sbjct: 118 GGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMN 177

Query: 168 ESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEK 227
           ESKLM+LLN S+YVP+YEDKDGDWMLVGDVPW MFVESCKRLRI+KG+EA+GLAPRAMEK
Sbjct: 178 ESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237

Query: 228 -CKNR 231
            CKNR
Sbjct: 238 YCKNR 242

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  248 bits (633), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/277 (51%), Positives = 168/277 (60%), Gaps = 50/277 (18%)

Query: 4   LGLNMGFEETELRLGLPGNRVLSEG------EGARKRGFSETVDLKLNLSSKDTSEK--- 54
           +  ++ FE TELRLGLPG     +         + KRGF+ET+DLKL L     +     
Sbjct: 1   MAADLAFEATELRLGLPGGGGDGDAAAAAARSSSGKRGFAETIDLKLKLEPAAAAVDDDD 60

Query: 55  ----------------------------------VKSFQKEKNPLPRATDPPAKPPAKTQ 80
                                             +K    + + +  A DP      K Q
Sbjct: 61  DKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKPRAPKAQ 120

Query: 81  VVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAA------FVKVSMDGAPYLRKVDLRM 134
           VVGWPPVRS+RKN+L V      + +D  G  + A      FVKVSMDGAPYLRKVDL+M
Sbjct: 121 VVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKM 180

Query: 135 YNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLV 194
           Y +Y +L  AL KMFSSFTIGNCGS G+ + MNESK+ DLLNGS+YVPTYEDKDGDWMLV
Sbjct: 181 YKSYLELSKALEKMFSSFTIGNCGSHGV-NGMNESKIADLLNGSEYVPTYEDKDGDWMLV 239

Query: 195 GDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           GDVPW MFVESCKRLRI+KG+EAIGLAPRAMEKCKNR
Sbjct: 240 GDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNR 276

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  221 bits (563), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/255 (50%), Positives = 153/255 (60%), Gaps = 57/255 (22%)

Query: 8   MGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNL--------------------- 46
           +GF+ETELRLGLPG   L+    + KRGF+ET+DLKL L                     
Sbjct: 4   LGFDETELRLGLPGAGELA-ARSSGKRGFAETIDLKLKLQPAAPAAVSGEEGAQEDKEDA 62

Query: 47  -----------SSKDTSEKVKSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNML 95
                      S K ++ +      E +P     D P  P  K QVVGWPPVRSFRKN+L
Sbjct: 63  DAAAAAADEKMSMKRSASQSSVVTAEPDP-----DKPRAP--KAQVVGWPPVRSFRKNVL 115

Query: 96  GVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIG 155
               K+            AA VKVSMDGAPYLRK+D+ MY +Y +L  A   MF+SFTIG
Sbjct: 116 AEKCKA------------AALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIG 163

Query: 156 NCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGT 215
            CGS   +     +KL D L   +YVPTYEDKDGDWMLVGDVPW MFVESCKRLRI+KG+
Sbjct: 164 KCGSH--QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGS 218

Query: 216 EAIGLAPRAMEKCKN 230
           EAIGLAPRA+EKCK+
Sbjct: 219 EAIGLAPRAVEKCKS 233

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38827|IAA9_ARATH Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1

 Score =  213 bits (542), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 123/227 (54%), Positives = 144/227 (63%), Gaps = 37/227 (16%)

Query: 33  KRGFSETVDLKLNLSSKDTSEKVKSFQKEKN---PLPRAT------DPPAKPP------- 76
           KRGFS+T+D          +E   S   EKN   P   AT      D P   P       
Sbjct: 120 KRGFSDTMD--------QFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTT 171

Query: 77  --------AKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLR 128
                   AK Q+VGWPPVRS+RKN L    K+S +E D   G+ A FVKVSMDGAPYLR
Sbjct: 172 NNSSSPPAAKAQIVGWPPVRSYRKNTLATTCKNS-DEVDGRPGSGALFVKVSMDGAPYLR 230

Query: 129 KVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGM--KDFMNESKLMDLLNGSDYVPTYED 186
           KVDLR Y  Y +L  AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYED
Sbjct: 231 KVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYED 290

Query: 187 KDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGL--APRAMEKCKNR 231
           KDGDWMLVGDVPW MF++ CK+L+I+KG +AIGL  APRAMEK K R
Sbjct: 291 KDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 126/270 (46%), Positives = 158/270 (58%), Gaps = 45/270 (16%)

Query: 5   GLNMGFEETELRLGLPGN--------RVLSEGEGA-----RKRGFSETVD--LKLNLSSK 49
           GLN  F+ TELRLGLPG+        R L+  + +      KR FS+ ++   K   S  
Sbjct: 37  GLN--FKATELRLGLPGSESPERVDSRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPG 94

Query: 50  DTSE------------------KVKSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFR 91
            T+                   K  +F K   P+         P +K QVVGWPP+RSFR
Sbjct: 95  STTATGDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFR 154

Query: 92  KNMLGVVQK------SSGEESDMAGG--NNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYH 143
           KN +   Q       S  EE++   G      +VKVSM+GAPYLRK+DL+ Y +Y +L  
Sbjct: 155 KNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSS 214

Query: 144 ALGKMFSSFTIGNCGSQGM--KDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGM 201
           AL KMFS FTIG  GS G   +D +NES+L DLL GS+YV TYEDKD DWMLVGDVPW M
Sbjct: 215 ALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEM 274

Query: 202 FVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           F+ SCK+LRI+K +EAIGLAPR MEKC++R
Sbjct: 275 FICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 121/278 (43%), Positives = 162/278 (58%), Gaps = 58/278 (20%)

Query: 7   NMGFEETELRLGLPGNR------------------------VLSEGEGA----------- 31
           N+ F+ TELRLGLP ++                        + S+  G+           
Sbjct: 46  NLNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSG 105

Query: 32  RKRGFSET----------------VDLKLNLSSKDTSEKVKSFQKEKNPLPRATDPPAKP 75
            KRGF++T                +++ L+   KD S   KS Q+E++      +    P
Sbjct: 106 NKRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVS---KSIQEERSHAKGGLN--NAP 160

Query: 76  PAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMY 135
            AK QVVGWPP+RS+RKN +      + +E D   G    FVKVSMDGAPYLRKVDLR Y
Sbjct: 161 AAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTY 220

Query: 136 NTYQDLYHALGKMFSSFTIGNCGSQGM--KDFMNESKLMDLLNGSDYVPTYEDKDGDWML 193
            +YQ L  AL KMFS FT+G CG  G   ++ M+E KL DLL+GS++V TYEDKDGDWML
Sbjct: 221 TSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWML 280

Query: 194 VGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           VGDVPW +F E+C++L+I+KG+++IGLAP A+EK KN+
Sbjct: 281 VGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
224066307	237	predicted protein [Populus trichocarpa]	0.965	0.945	0.771	9e-96
255559923	244	Auxin-induced protein AUX28, putative [R	0.978	0.930	0.721	1e-88
20385508	249	auxin-regulated protein [Populus tremula	0.952	0.887	0.711	1e-87
224131258	250	predicted protein [Populus trichocarpa]	0.956	0.888	0.703	2e-86
224123424	246	predicted protein [Populus trichocarpa]	0.948	0.894	0.719	3e-86
110826446	258	auxin-regulated protein [Populus tomento	0.961	0.864	0.690	4e-86
255580939	257	Auxin-responsive protein IAA16, putative	0.961	0.867	0.683	5e-86
332167931	253	auxin-responsive protein [Gossypium hirs	0.943	0.865	0.776	1e-85
225437215	244	PREDICTED: auxin-induced protein AUX28-l	0.943	0.897	0.748	2e-85
147770149	235	hypothetical protein VITISV_013635 [Viti	0.943	0.931	0.748	3e-85

>gi|224066307|ref|XP_002302075.1| predicted protein [Populus trichocarpa] gi|222843801|gb|EEE81348.1| predicted protein [Populus trichocarpa] gi|429326564|gb|AFZ78622.1| hypothetical protein [Populus tomentosa]

 Score =  355 bits (911), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 179/232 (77%), Positives = 194/232 (83%), Gaps = 8/232 (3%)

Query: 5   GLNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLSSKDT-----SEKVKSFQ 59
           G  MGFEETELRLGLPGN   +EGE  RKRGFSETVDLKL LSSK++      EK  S Q
Sbjct: 6   GTKMGFEETELRLGLPGNGGGAEGEMVRKRGFSETVDLKLKLSSKESGADPNHEKTSSLQ 65

Query: 60  KEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKV 119
           +EKN L  ATDP AKPPAK QVVGWPPVRSFRKNML V + S+ +E +   G NA FVKV
Sbjct: 66  REKNLL--ATDP-AKPPAKAQVVGWPPVRSFRKNMLAVQKSSTDQECEKVPGGNATFVKV 122

Query: 120 SMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSD 179
           SMDGAPYLRKVDL+MY TYQ+L  ALGKMFSSFTIGNCGS G+KDF+NESKL+DLLNG+D
Sbjct: 123 SMDGAPYLRKVDLKMYKTYQELSDALGKMFSSFTIGNCGSHGLKDFLNESKLIDLLNGTD 182

Query: 180 YVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           YVPTYEDKDGDWMLVGDVPW MFVESCKRLRI+KGTEA GLAPRAMEKCKNR
Sbjct: 183 YVPTYEDKDGDWMLVGDVPWDMFVESCKRLRIMKGTEATGLAPRAMEKCKNR 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559923|ref|XP_002520980.1| Auxin-induced protein AUX28, putative [Ricinus communis] gi|223539817|gb|EEF41397.1| Auxin-induced protein AUX28, putative [Ricinus communis]

 Score =  331 bits (849), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 176/244 (72%), Positives = 192/244 (78%), Gaps = 17/244 (6%)

Query: 1   MEALGLNMGFEETELRLGL---------PGNRVLSEGEGARKRGFSETVDLKLNLSSK-- 49
           +E     MGFEETELRLGL               SEGE ARKRGFSETVDLKLNLSSK  
Sbjct: 4   VEQAATKMGFEETELRLGLPGNVGGGGSSTTNTASEGEVARKRGFSETVDLKLNLSSKEP 63

Query: 50  --DTSEKVKSFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESD 107
             D ++  K+  +E N L  + D PAKPPAK QVVGWPPVRSFRK+ML  VQKSS EE++
Sbjct: 64  GIDPNDNTKTISRENNLL--SADDPAKPPAKAQVVGWPPVRSFRKHML-TVQKSSNEETE 120

Query: 108 MAGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMN 167
             G N   FVKVSMDGAPYLRKVDL+MY +YQ+L  ALGKMFSSFTIGNCGSQGMKDF+N
Sbjct: 121 KLGLN-PTFVKVSMDGAPYLRKVDLKMYKSYQELSDALGKMFSSFTIGNCGSQGMKDFLN 179

Query: 168 ESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEK 227
           ESKL+DLLNG+DYVPTYEDKDGDWMLVGDVPW MFVESCKRLRI+KGTEA GLAPRAMEK
Sbjct: 180 ESKLIDLLNGTDYVPTYEDKDGDWMLVGDVPWKMFVESCKRLRIMKGTEATGLAPRAMEK 239

Query: 228 CKNR 231
            KNR
Sbjct: 240 RKNR 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20385508|gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/236 (71%), Positives = 194/236 (82%), Gaps = 15/236 (6%)

Query: 8   MGFEETELRLGLPGNRVLSEG---EGAR---KRGFSETVDLKLNLSSKDT----SEKVKS 57
           M FEETELRLGLPG   +S G   E A+   KRGFSETVDLKLNLS+K+T    S++ K 
Sbjct: 16  MNFEETELRLGLPGG--VSNGNDSEAAKSNGKRGFSETVDLKLNLSTKETGKDGSDQEKV 73

Query: 58  FQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSS--GEESDMAGGNNAA 115
             KEK   PR  DP AKPP+K QVVGWPP+RSFRKN++ V + S+  GE++  +G   AA
Sbjct: 74  VMKEKTVAPRPNDP-AKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEKASSSGATGAA 132

Query: 116 FVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLL 175
           FVKVSMDGAPYLRKVDL++Y +Y++L  ALGKMFSSFTIGNCGSQG KDFMNESKL+DLL
Sbjct: 133 FVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKDFMNESKLIDLL 192

Query: 176 NGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           N S+YVPTYEDKDGDWMLVGDVPWGMFV+SCKRLRI+KG+EAIGLAPRA+EKCKNR
Sbjct: 193 NSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 248

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131258|ref|XP_002328494.1| predicted protein [Populus trichocarpa] gi|118484744|gb|ABK94241.1| unknown [Populus trichocarpa] gi|222838209|gb|EEE76574.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/236 (70%), Positives = 194/236 (82%), Gaps = 14/236 (5%)

Query: 8   MGFEETELRLGLPGNRVL-SEGEGAR---KRGFSETVDLKLNLSSKDT----SEKVKSFQ 59
           + +EETELRLGLPG     ++GE A+   KRGFSETVDLKLNLS+K+T    S++ K   
Sbjct: 16  INYEETELRLGLPGGASNGNDGEAAKGNGKRGFSETVDLKLNLSTKETGKDGSDQEKVVM 75

Query: 60  KEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGN----NAA 115
           KEK   PR  DP AKPP+K QVVGWPP+RSFRKN++  VQK+S +E + A  +     AA
Sbjct: 76  KEKTVAPRPNDP-AKPPSKAQVVGWPPIRSFRKNVM-AVQKNSNDEGEKASSSGTTGTAA 133

Query: 116 FVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLL 175
           FVKVSMDGAPYLRKVDL++Y +Y++L  ALGKMFSSFTIGNCGSQG KDFMNESKL+DLL
Sbjct: 134 FVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKDFMNESKLIDLL 193

Query: 176 NGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           N S+YVPTYEDKDGDWMLVGDVPWGMFV+SCKRLRI+KG+EAIGLAPRA+EKCKNR
Sbjct: 194 NSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123424|ref|XP_002319075.1| predicted protein [Populus trichocarpa] gi|222857451|gb|EEE94998.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 169/235 (71%), Positives = 193/235 (82%), Gaps = 15/235 (6%)

Query: 8   MGFEETELRLGLPGN-RVLSEGEGAR---KRGFSETVDLKLNLSSKDT-----SEKVKSF 58
           + FEETELRLGLPG     ++GE A+   KRGFSETVDLKLNLS+K++      EKV   
Sbjct: 15  INFEETELRLGLPGGIGNGNDGEVAKSNGKRGFSETVDLKLNLSTKESGKGGDEEKV--- 71

Query: 59  QKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAG--GNNAAF 116
            KEK   P A+  PAKPPAK QVVGWPP+RSFRKN++  VQK+S +  + +G  G   AF
Sbjct: 72  MKEKTVAPPASTDPAKPPAKAQVVGWPPIRSFRKNVM-AVQKNSNDNGEKSGSSGTGVAF 130

Query: 117 VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLN 176
           VKVSMDGAPYLRKVDL++Y +YQ+L  ALGKMFSSFTIGNCGSQGMKDFMNESKL+DLLN
Sbjct: 131 VKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLN 190

Query: 177 GSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           GSDYVPTYEDKDGDWMLVGDVPW MFV+SCKRLRI+KG+EAIGLAPRA+EKCKNR
Sbjct: 191 GSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 245

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110826446|gb|ABH01143.1| auxin-regulated protein [Populus tomentosa]

 Score =  323 bits (827), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 163/236 (69%), Positives = 192/236 (81%), Gaps = 13/236 (5%)

Query: 8   MGFEETELRLGLPG------NRVLSEGEGARKRGFSETVDLKLNLSSKDT----SEKVKS 57
           M FEETELRLGLPG      +   ++  G R + FSETVDLKLNLS+KDT    S++ K+
Sbjct: 16  MNFEETELRLGLPGGVSNGNDPEAAKSNGKRGQRFSETVDLKLNLSTKDTGKDGSDQEKA 75

Query: 58  FQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSS--GEESDMAGGNNAA 115
             KEK   PR  DP AKPP+K QVVGWPP+RSFRKN++ V + S+  GE++  +G   AA
Sbjct: 76  AMKEKAVAPRPNDP-AKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEKASSSGATGAA 134

Query: 116 FVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLL 175
           FVKVSMDGAPYLRKVDL++Y +Y++L  ALGKMFSSFTIGNCGSQG K+FMNESKL+DLL
Sbjct: 135 FVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKEFMNESKLIDLL 194

Query: 176 NGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           N S+YVPTYEDKDGDWMLVGDVPWGMFV+SCKRLRI+KG+EAIGLAPRA+EKCKNR
Sbjct: 195 NSSEYVPTYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNR 250

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580939|ref|XP_002531288.1| Auxin-responsive protein IAA16, putative [Ricinus communis] gi|223529121|gb|EEF31101.1| Auxin-responsive protein IAA16, putative [Ricinus communis]

 Score =  323 bits (827), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 195/243 (80%), Gaps = 20/243 (8%)

Query: 8   MGFEETELRLGLPGNRVLSEGEGAR---KRGFSETVDLKLNLSSKDTSEKV----KSFQK 60
           + FEETELRLGLPG   +++ E A+   KRGFSETVDLKLNLS+K+ S K     +   K
Sbjct: 15  INFEETELRLGLPGGSNVNDSEFAKVNGKRGFSETVDLKLNLSTKEPSGKDVIVGEETMK 74

Query: 61  EKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESD------------M 108
           EK  +P +++ PAKPPAK QVVGWPP+RSFRKN++ V QK+S +E +             
Sbjct: 75  EKATVPSSSNDPAKPPAKAQVVGWPPIRSFRKNVMAV-QKNSTDEGEKGTATSAPAAAAT 133

Query: 109 AGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNE 168
           +G  +AAFVKVSMDGAPYLRKVDL++Y +YQ+L  ALGKMFSSFTIGNCGSQGMKDFMNE
Sbjct: 134 SGSTSAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNE 193

Query: 169 SKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKC 228
           SKL+DLLNGS+YVPTYEDKDGDWMLVGDVPW MFV SCKRLRI+KG+EAIGLAPRA+EKC
Sbjct: 194 SKLIDLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGSEAIGLAPRAVEKC 253

Query: 229 KNR 231
           KNR
Sbjct: 254 KNR 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167931|gb|AEE25650.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/233 (77%), Positives = 186/233 (79%), Gaps = 14/233 (6%)

Query: 8   MGFEETELRLGLPGNRVLSEG-EGARKRGFSETVDLKLNLSSK-DTS------EKVKSFQ 59
           MGFEETELRLGLPG        E  RKRGFSETVDLKLNLSSK DTS      EKVK   
Sbjct: 25  MGFEETELRLGLPGGGGGGGDGEVVRKRGFSETVDLKLNLSSKQDTSGIDPNDEKVKGLH 84

Query: 60  KEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVV-QKSSGEESDMAGGNNAAFVK 118
           +EKN L  A DP AKPPAK QVVGWPPVRSFRKNML    QKSS EES    G  AA VK
Sbjct: 85  QEKNLLLSAIDP-AKPPAKAQVVGWPPVRSFRKNMLATTTQKSSSEES----GEKAALVK 139

Query: 119 VSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGS 178
           VSMDGAPYLRKVDLRMY +Y  L  AL KMFSSFTIGNCGSQGMKDFMNESKLMDLLNGS
Sbjct: 140 VSMDGAPYLRKVDLRMYTSYHQLSDALAKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGS 199

Query: 179 DYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           DYVPTYEDKDGD MLVGDVPW MFVESCKRLRI+KGTEAIGLAP+A+EKCK R
Sbjct: 200 DYVPTYEDKDGDRMLVGDVPWEMFVESCKRLRIMKGTEAIGLAPKAVEKCKKR 252

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437215|ref|XP_002281771.1| PREDICTED: auxin-induced protein AUX28-like isoform 1 [Vitis vinifera]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 186/231 (80%), Gaps = 12/231 (5%)

Query: 7   NMGFEETELRLGLPGNRVLSEG-EGARKRGFSETVDLKLNLSSKDT---SEKVKSFQKEK 62
           ++  E TELRLGLPG    SEG E  RKRGFSETVDLKLNLS K+      KVKS QKEK
Sbjct: 19  DLNLEATELRLGLPGG---SEGSEVVRKRGFSETVDLKLNLSGKEAGVDDNKVKSLQKEK 75

Query: 63  NP--LPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVS 120
           +   LP   DP A+PPAK QVVGWPPVRSFRKNML   QK   EE +    N AAFVKVS
Sbjct: 76  SKSLLPCGNDP-ARPPAKAQVVGWPPVRSFRKNML-AGQKGGSEEGEKVSCN-AAFVKVS 132

Query: 121 MDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDY 180
           MDGAPYLRKVDL+MY +YQ+L +ALG MFSSFTIGN GSQGMKDFMNESKLMDLLNG D+
Sbjct: 133 MDGAPYLRKVDLKMYTSYQELSNALGNMFSSFTIGNYGSQGMKDFMNESKLMDLLNGFDH 192

Query: 181 VPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           VPTYEDKDGDWMLVGDVPW MFV+SCKRLRI+KG EAIGLAPRAMEKCKNR
Sbjct: 193 VPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGKEAIGLAPRAMEKCKNR 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770149|emb|CAN63268.1| hypothetical protein VITISV_013635 [Vitis vinifera] gi|297735492|emb|CBI17932.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 186/231 (80%), Gaps = 12/231 (5%)

Query: 7   NMGFEETELRLGLPGNRVLSEG-EGARKRGFSETVDLKLNLSSKDT---SEKVKSFQKEK 62
           ++  E TELRLGLPG    SEG E  RKRGFSETVDLKLNLS K+      KVKS QKEK
Sbjct: 10  DLNLEATELRLGLPGG---SEGSEVVRKRGFSETVDLKLNLSGKEAGVDDNKVKSLQKEK 66

Query: 63  NP--LPRATDPPAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVS 120
           +   LP   DP A+PPAK QVVGWPPVRSFRKNML   QK   EE +    N AAFVKVS
Sbjct: 67  SKSLLPCGNDP-ARPPAKAQVVGWPPVRSFRKNML-AGQKGGSEEGEKVSCN-AAFVKVS 123

Query: 121 MDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDY 180
           MDGAPYLRKVDL+MY +YQ+L +ALG MFSSFTIGN GSQGMKDFMNESKLMDLLNG D+
Sbjct: 124 MDGAPYLRKVDLKMYTSYQELSNALGNMFSSFTIGNYGSQGMKDFMNESKLMDLLNGFDH 183

Query: 181 VPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
           VPTYEDKDGDWMLVGDVPW MFV+SCKRLRI+KG EAIGLAPRAMEKCKNR
Sbjct: 184 VPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGKEAIGLAPRAMEKCKNR 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.926	0.911	0.633	5.5e-70
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.948	0.964	0.619	9.2e-68
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.965	0.921	0.628	4e-67
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.943	0.956	0.598	1.4e-64
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.659	0.452	0.658	1.3e-53
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.663	0.504	0.603	3.3e-51
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.663	0.578	0.581	1.8e-50
UNIPROTKB|Q75GK0	233	IAA11 "Auxin-responsive protei	0.931	0.927	0.489	1.4e-46
UNIPROTKB|Q5NB25	263	IAA3 "Auxin-responsive protein	0.607	0.536	0.574	1.8e-44
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.887	0.801	0.472	3.1e-44

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 154/243 (63%), Positives = 176/243 (72%)

Query:     8 MGFEETELRLGLPGNRVLSE--GEGARKRGFSETVDLKLNLSSK--DTSEKVK-SFQKEK 62
             + FE TELRLGLPG     E  G+   KRGFSETVDLKLNLSS   D+  KV     KEK
Sbjct:     2 INFEATELRLGLPGGNHGGEMAGKNNGKRGFSETVDLKLNLSSTAMDSVSKVDLENMKEK 61

Query:    63 NXXXXXXXXXXXXXXKTQVVGWPPVRSFRKNMLGVVQKSSG---EESDMAGGNNAA---- 115
                            K QVVGWPPVRSFRKN++   + ++G   E +D   G++ A    
Sbjct:    62 ---------VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSA 112

Query:   116 -------FVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNE 168
                    +VKVSMDGAPYLRK+DL++Y TYQDL +AL KMFSSFTIGN G QGMKDFMNE
Sbjct:   113 SACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNE 172

Query:   169 SKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKC 228
             SKL+DLLNGSDYVPTYEDKDGDWMLVGDVPW MFV+SCKR+RI+KG+EAIGLAPRA+EKC
Sbjct:   173 SKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKC 232

Query:   229 KNR 231
             KNR
Sbjct:   233 KNR 235

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 143/231 (61%), Positives = 162/231 (70%)

Query:     8 MGFEETELRLGLPGNRVLSEGEG----ARKRGFSETVDLKLNLSSKDTSE---KVKSFQK 60
             M  +ETEL LGLPG     E         KRGFSETVDLKLNL S              K
Sbjct:     1 MNLKETELCLGLPGGTETVESPAKSGVGNKRGFSETVDLKLNLQSNKQGHVDLNTNGAPK 60

Query:    61 EKNXXXXXXXXXXXXXXKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVS 120
             EK               K QVVGWPPVR++RKN++   +    EE+  +GG   AFVKVS
Sbjct:    61 EKTFLKDPSKPPA----KAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVS 116

Query:   121 MDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDY 180
             MDGAPYLRKVDL+MY +Y+DL  AL KMFSSFT+G+ G+QGM DFMNESK+MDLLN S+Y
Sbjct:   117 MDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEY 176

Query:   181 VPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
             VP+YEDKDGDWMLVGDVPW MFVESCKRLRI+KG+EAIGLAPRAMEK KNR
Sbjct:   177 VPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNR 227

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 154/245 (62%), Positives = 176/245 (71%)

Query:     4 LGLNMGFEETELRLGLPGNR--VLSEGEGA--RKRGFSETVDLKLNL-SSKDTS---EKV 55
             +G  M  + TEL LGLPG    V S  + A   KRGFSETVDL LNL S+K+ S   + V
Sbjct:     2 IGQLMNLKATELCLGLPGGAEAVESPAKSAVGSKRGFSETVDLMLNLQSNKEGSVDLKNV 61

Query:    56 KSFQKEKNXXXXXXXXXXXXXXKTQVVGWPPVRSFRKNMLGVVQKSSGEE---SDMAG-- 110
              +  KEK               K QVVGWPPVR++RKNM+   + SSG E   S+ AG  
Sbjct:    62 SAVPKEKTTLKDPSKPPA----KAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNF 117

Query:   111 GNNAA---FVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMN 167
             G  AA    VKVSMDGAPYLRKVDL+MY +YQDL  AL KMFSSFT+GN G+QGM DFMN
Sbjct:   118 GGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMN 177

Query:   168 ESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEK 227
             ESKLM+LLN S+YVP+YEDKDGDWMLVGDVPW MFVESCKRLRI+KG+EA+GLAPRAMEK
Sbjct:   178 ESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237

Query:   228 -CKNR 231
              CKNR
Sbjct:   238 YCKNR 242

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 143/239 (59%), Positives = 173/239 (72%)

Query:     1 MEALGLNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLSSK------DTSEK 54
             M ++ LN+   ETEL LGLPG   ++   G  KRGFSETVDLKLNL+++       T+  
Sbjct:     2 MGSVELNL--RETELCLGLPGGDTVAPVTG-NKRGFSETVDLKLNLNNEPANKEGSTTHD 58

Query:    55 VKSFQ-KEKNXXXXXXXXXXXXXXKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNN 113
             V +F  KEK+              K QVVGWPPVRS+RKN++   QKSSG      G   
Sbjct:    59 VVTFDSKEKSACPKDPAKPPA---KAQVVGWPPVRSYRKNVMVSCQKSSG------GPEA 109

Query:   114 AAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIG-NCGSQGMKDFMNESKLM 172
             AAFVKVSMDGAPYLRK+DLRMY +Y +L +AL  MFSSFT+G + G +GM DFMNE KLM
Sbjct:   110 AAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLM 169

Query:   173 DLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
             DL+N  DYVP+YEDKDGDWMLVGDVPW MFV++CKRLR++KG++AIGLAPRAMEKCK+R
Sbjct:   170 DLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 104/158 (65%), Positives = 122/158 (77%)

Query:    78 KTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMYNT 137
             K Q+VGWPPVRS+RKN L    K+S +E D   G+ A FVKVSMDGAPYLRKVDLR Y  
Sbjct:   181 KAQIVGWPPVRSYRKNTLATTCKNS-DEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTN 239

Query:   138 YQDLYHALGKMFSSFTIGNCGSQGM--KDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG 195
             Y +L  AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGDWMLVG
Sbjct:   240 YGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVG 299

Query:   196 DVPWGMFVESCKRLRIVKGTEAIGLA--PRAMEKCKNR 231
             DVPW MF++ CK+L+I+KG +AIGLA  PRAMEK K R
Sbjct:   300 DVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 491 (177.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 99/164 (60%), Positives = 119/164 (72%)

Query:    78 KTQVVGWPPVRSFRKNMLGVVQK------SSGEESDMAGGNN--AAFVKVSMDGAPYLRK 129
             K QVVGWPP+RSFRKN +   Q       S  EE++   G      +VKVSM+GAPYLRK
Sbjct:   141 KAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRK 200

Query:   130 VDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGM--KDFMNESKLMDLLNGSDYVPTYEDK 187
             +DL+ Y +Y +L  AL KMFS FTIG  GS G   +D +NES+L DLL GS+YV TYEDK
Sbjct:   201 IDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDK 260

Query:   188 DGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
             D DWMLVGDVPW MF+ SCK+LRI+K +EAIGLAPR MEKC++R
Sbjct:   261 DSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 478 (173.3 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 93/160 (58%), Positives = 121/160 (75%)

Query:    78 KTQVVGWPPVRSFRKNMLGVVQKS-SGE---ESDMAGGNNAAFVKVSMDGAPYLRKVDLR 133
             K QVVGWPP+RS+RKN + + Q +  G+   E+  A  +   +VKVSMDGAPYLRKVDL+
Sbjct:   106 KAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLK 165

Query:   134 MYNTYQDLYHALGKMFSSFTIGNCGSQGM--KDFMNESKLMDLLNGSDYVPTYEDKDGDW 191
             MY  Y++L  AL KMFS FT+G+  S G   +D +++ +LMDL NG++ V TYEDKD DW
Sbjct:   166 MYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDW 225

Query:   192 MLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
             MLVGDVPW MF +SC+RLRI+KG++A+GLAPRA +K KNR
Sbjct:   226 MLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNR 265

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GK0 IAA11 "Auxin-responsive protein IAA11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 116/237 (48%), Positives = 149/237 (62%)

Query:     8 MGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNL--------SSKDTSEKVKSFQ 59
             +GF+ETELRLGLPG   L+    + KRGF+ET+DLKL L        S ++ +++ K   
Sbjct:     4 LGFDETELRLGLPGAGELA-ARSSGKRGFAETIDLKLKLQPAAPAAVSGEEGAQEDKEDA 62

Query:    60 KEKNXXXXXXXXXXXXXXKTQVVGWPP----VRSFRKNMLGVVQKSSGEESDMAGG-NNA 114
                               ++ VV   P     R+ +  ++G     S  ++ +A     A
Sbjct:    63 DAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPPVRSFRKNVLAEKCKAA 122

Query:   115 AFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGS-QGMKDFMNESKLMD 173
             A VKVSMDGAPYLRK+D+ MY +Y +L  A   MF+SFTIG CGS Q +K+    +KL D
Sbjct:   123 ALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSHQQLKE---SNKLRD 179

Query:   174 LLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKN 230
              L   +YVPTYEDKDGDWMLVGDVPW MFVESCKRLRI+KG+EAIGLAPRA+EKCK+
Sbjct:   180 DL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5NB25 IAA3 "Auxin-responsive protein IAA3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 438 (159.2 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
 Identities = 89/155 (57%), Positives = 107/155 (69%)

Query:    78 KTQVVGWPPVRSFRKNMLGVVQ-KSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMYN 136
             K QVVGWPP+RS+RKN +   Q KS+ E+ D   G    +VKVSMDGAPYLRKVDL+ Y 
Sbjct:   121 KAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYK 180

Query:   137 TYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD 196
              Y+D+   L KMF  F+ G  G++  KD              +YV TYEDKDGDWMLVGD
Sbjct:   181 NYKDMSLGLEKMFIGFSTGKEGAENQKD-------------GEYVLTYEDKDGDWMLVGD 227

Query:   197 VPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
             VPW MF +SC+RLRI+KG++AIGLAPRA EK KNR
Sbjct:   228 VPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNR 262

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 113/239 (47%), Positives = 141/239 (58%)

Query:    13 TELRLGLPGNR------------VLSEGEGARKRGFS-ETVDLKLNLSSKDTSEKVKSF- 58
             TELRLGLPG+             +L   +GA KRGFS E   L  + ++   + K K   
Sbjct:    31 TELRLGLPGSHSPDRSPPAATLDLLPAAKGA-KRGFSDEARPLPASAAAAAAAGKGKKAA 89

Query:    59 -----QKEKNXXXXXXXXXXXXXXKTQVVGWPPVRSFRKNMLGVVQ-KSSGEESDMAGGN 112
                  +  +               K QVVGWPP+RS+RKN +   Q KSS E+++   G 
Sbjct:    90 AGEEDEDAEEEDKKVAAAPQAPAAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQ 149

Query:   113 NAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLM 172
                +VKVSMDGAPYLRKVDL+ Y  Y+DL  AL KMF  FT G       KD ++ES+  
Sbjct:   150 GFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTG-------KDGLSESR-- 200

Query:   173 DLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRAMEKCKNR 231
                   +YV TYEDKDGDWMLVGDVPW MF  SC+RLRI+KG++AIGLAPRA++K KNR
Sbjct:   201 ---KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNR 256

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P13089	AUX28_SOYBN	No assigned EC number	0.7085	0.9439	0.9012	yes	no
P0C132	IAA30_ORYSJ	No assigned EC number	0.5126	0.9784	0.8194	yes	no
O24407	IAA16_ARATH	No assigned EC number	0.6326	0.9181	0.9025	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	2e-96

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  278 bits (714), Expect = 2e-96
 Identities = 118/223 (52%), Positives = 142/223 (63%), Gaps = 41/223 (18%)

Query: 8   MGFEETELRLGLPGN-RVLSEGEGA----RKRGFSETVDLKLNLSSKDTSEKVKSFQKEK 62
           +  + TELRLGLPG     SE   +     KRGFSE  +               S  ++K
Sbjct: 1   LNLKATELRLGLPGGSEPESEPSTSSVTSNKRGFSEVTE----------DGISSSLGEDK 50

Query: 63  NPLPRATDP-PAKPPAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSM 121
           + +  +++   AKPPAK QVVGWPPVRS+RKN              +    + ++VKVSM
Sbjct: 51  STISVSSNGDSAKPPAKAQVVGWPPVRSYRKNS-------------LREKKSGSYVKVSM 97

Query: 122 DGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYV 181
           DGAPYLRKVDL+MY +Y +L  AL KMFS FTIG            ES L+DLLNGS+YV
Sbjct: 98  DGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIG------------ESGLLDLLNGSEYV 145

Query: 182 PTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRA 224
           PTYEDKDGDWMLVGDVPW MFVESCKRLRI+KG+EAIGLAPR+
Sbjct: 146 PTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRS 188

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.57
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.23
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.2
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.03
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.02
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.73
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.52
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.28
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.82
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.69
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	95.46
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	94.76
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	92.26

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=9e-70  Score=471.91  Aligned_cols=203  Identities=53%  Similarity=0.891  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCC--------cCCcCCcCCCCchhhhhhccCCCCccc--chhhcccccCCCCCC--CCCCCCCC
Q 026823            8 MGFEETELRLGLPGNRVL--------SEGEGARKRGFSETVDLKLNLSSKDTS--EKVKSFQKEKNPLPR--ATDPPAKP   75 (232)
Q Consensus         8 ln~~~TELrLGLPG~~~~--------~~~~~~~KR~fse~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~p   75 (232)
                      ||||+|||||||||+.++        .....++||+|+++++...........  ........+....+.  .......|
T Consensus         1 ln~~~TELrLGLPG~~~~~~~~~~~~~~~~~~~kR~F~~aid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p   80 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPDASSSSSSKKSSSGNKRGFSEAIDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSSDSSSSSPP   80 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCCcccccccccccCcccccchhhhhhcccccccccccccccCcccccccccccccccccCCCC
Confidence            799999999999998642        234678899999998875411100000  000000011100000  01122335


Q ss_pred             CCCCCCCCCCCcchhhhcccccccCCCCcccccCCCCCcceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCC
Q 026823           76 PAKTQVVGWPPVRSFRKNMLGVVQKSSGEESDMAGGNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIG  155 (232)
Q Consensus        76 ~~k~qvVGWPPVrs~Rkn~~~~~~~~~~~~~~~~~~~~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~  155 (232)
                      .+++|+|||||||+||+|.+...+          ....++||||+|||+||||||||++|+||++|+.+|++||.+|+|+
T Consensus        81 ~~~~~~vgwpp~~s~r~n~~~~~~----------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~  150 (215)
T PF02309_consen   81 ASKAQVVGWPPVRSFRKNSLSEKQ----------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIE  150 (215)
T ss_dssp             -----BTTBS----S-----------------------------------------------------------------
T ss_pred             cccccccCCCcccccccccccccc----------cccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCcc
Confidence            578999999999999999887221          1223799999999999999999999999999999999999988888


Q ss_pred             CcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccCCChhhhhhcceeeEEecCccccCcChhh
Q 026823          156 NCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWGMFVESCKRLRIVKGTEAIGLAPRA  224 (232)
Q Consensus       156 ~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGDvPW~mFv~svkRLrImk~sea~gl~~~~  224 (232)
                      +|++++    .++..+.+++++++|+|||||+||||||||||||+|||++|||||||+.+|++||+||+
T Consensus       151 ~~~~~~----~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  151 QCGSHG----LNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccccc----ccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            888754    56677788888899999999999999999999999999999999999999999999985

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.57  E-value=0.00016  Score=53.03  Aligned_cols=68  Identities=25%  Similarity=0.388  Sum_probs=55.2

Q ss_pred             eeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEcc
Q 026823          116 FVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       116 ~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  195 (232)
                      -|||+..|. +=|.+.+..--+|.+|...++..|...                        ...+.+.|.|.||||..+-
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~Y~D~dgD~V~i~   57 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL------------------------DEDFQLKYKDEDGDLVTIS   57 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS------------------------TSSEEEEEEETTSSEEEES
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC------------------------CccEEEEeeCCCCCEEEeC
Confidence            489999997 334588888889999999999999861                        2468999999999999887


Q ss_pred             C-CChhhhhhccee
Q 026823          196 D-VPWGMFVESCKR  208 (232)
Q Consensus       196 D-vPW~mFv~svkR  208 (232)
                      + .=|++.+..+++
T Consensus        58 sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   58 SDEDLQEAIEQAKE   71 (84)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            5 568888887753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.23  E-value=0.0016  Score=47.74  Aligned_cols=65  Identities=22%  Similarity=0.346  Sum_probs=51.8

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccC
Q 026823          117 VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD  196 (232)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD  196 (232)
                      |||.-.|  --|.+-+..--+|.+|...+.+.|...                        ...+.|.|+|.||||..+.+
T Consensus         4 vK~~~~~--~~~~~~~~~~~s~~dL~~~i~~~~~~~------------------------~~~~~l~Y~Dedgd~v~l~s   57 (81)
T smart00666        4 VKLRYGG--ETRRLSVPRDISFEDLRSKVAKRFGLD------------------------NQSFTLKYQDEDGDLVSLTS   57 (81)
T ss_pred             EEEEECC--EEEEEEECCCCCHHHHHHHHHHHhCCC------------------------CCCeEEEEECCCCCEEEecC
Confidence            6888755  367777888899999999999999851                        23589999999999987655


Q ss_pred             -CChhhhhhcce
Q 026823          197 -VPWGMFVESCK  207 (232)
Q Consensus       197 -vPW~mFv~svk  207 (232)
                       .=|.+.++.++
T Consensus        58 d~Dl~~a~~~~~   69 (81)
T smart00666       58 DEDLEEAIEEYD   69 (81)
T ss_pred             HHHHHHHHHHHH
Confidence             57777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.20  E-value=0.0013  Score=51.12  Aligned_cols=68  Identities=22%  Similarity=0.272  Sum_probs=51.9

Q ss_pred             eeEEEecCcccceeeecC---CCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeE
Q 026823          116 FVKVSMDGAPYLRKVDLR---MYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWM  192 (232)
Q Consensus       116 ~VKV~MdG~pigRKVDL~---~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM  192 (232)
                      -|||.-+|.-+=-++++.   .--+|++|...+.+.|..   .                    ...+|+|.|.|.||||.
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l---~--------------------~~~~~~l~Y~Dedgd~V   58 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL---S--------------------PDADLSLTYTDEDGDVV   58 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC---C--------------------CCCcEEEEEECCCCCEE
Confidence            489999998555555554   467999999999999986   1                    13579999999999999


Q ss_pred             EccCCChhhhhhccee
Q 026823          193 LVGDVPWGMFVESCKR  208 (232)
Q Consensus       193 LVGDvPW~mFv~svkR  208 (232)
                      .+-..  +.|...+.+
T Consensus        59 ~l~~D--~DL~~a~~~   72 (91)
T cd06398          59 TLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEccH--HHHHHHHHH
Confidence            88655  555555544

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.03  E-value=0.0025  Score=48.52  Aligned_cols=54  Identities=22%  Similarity=0.360  Sum_probs=43.3

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEcc
Q 026823          117 VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  195 (232)
                      |||...|.  .+.+-|..--+|++|...+.++|..   .                    +.+.|.|-|.|.||||.++-
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~---~--------------------~~~~f~LkY~Ddegd~v~lt   56 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL---D--------------------DMSAFDLKYLDDDEEWVLLT   56 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC---C--------------------CCCeeEEEEECCCCCeEEee
Confidence            89999887  4455555566999999999999985   1                    13579999999999998764

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.02  E-value=0.0034  Score=45.67  Aligned_cols=66  Identities=21%  Similarity=0.347  Sum_probs=51.7

Q ss_pred             eeEEEecCcccceeeecC-CCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEc
Q 026823          116 FVKVSMDGAPYLRKVDLR-MYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLV  194 (232)
Q Consensus       116 ~VKV~MdG~pigRKVDL~-~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV  194 (232)
                      -|||+-.|.  -|.+=+. .--+|++|...|.+.|...                        ...+.+.|.|.||||..+
T Consensus         2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~------------------------~~~~~l~y~D~e~d~v~l   55 (81)
T cd05992           2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD------------------------AVSFKLKYPDEDGDLVTI   55 (81)
T ss_pred             cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC------------------------CCcEEEEeeCCCCCEEEe
Confidence            378888765  3444444 8889999999999999861                        135799999999999988


Q ss_pred             cC-CChhhhhhcce
Q 026823          195 GD-VPWGMFVESCK  207 (232)
Q Consensus       195 GD-vPW~mFv~svk  207 (232)
                      .+ .=|++.++.++
T Consensus        56 ~sd~Dl~~a~~~~~   69 (81)
T cd05992          56 SSDEDLEEAIEEAR   69 (81)
T ss_pred             CCHHHHHHHHHHHh
Confidence            87 67777777765

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.73  E-value=0.0055  Score=47.04  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=46.2

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEcc
Q 026823          117 VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  195 (232)
                      |||.-.|.-+--+++-+..-+|++|...+.++|+.                        +  .|.|.|-|.||||.++-
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l------------------------~--~f~lKYlDde~e~v~ls   55 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL------------------------N--DIQIKYVDEENEEVSVN   55 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC------------------------C--cceeEEEcCCCCEEEEE
Confidence            79999999777788887788999999999999986                        1  46899999999998863

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.52  E-value=0.01  Score=45.60  Aligned_cols=72  Identities=24%  Similarity=0.346  Sum_probs=52.4

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEcc-
Q 026823          117 VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG-  195 (232)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG-  195 (232)
                      ||..-|..=-=-.+|.....+|+++..-|+.||.+                        ....|+|-|.|.+||.+-+- 
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l------------------------~~~~f~i~Y~D~~gDLLPInN   58 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI------------------------PNVDFLIGYTDPHGDLLPINN   58 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC------------------------CCCcEEEEEeCCCCCEecccC
Confidence            56666665222245556679999999999999986                        13478999999999999775 


Q ss_pred             CCChhhhhhccee-eEEe
Q 026823          196 DVPWGMFVESCKR-LRIV  212 (232)
Q Consensus       196 DvPW~mFv~svkR-LrIm  212 (232)
                      |+-+..=++++++ |||.
T Consensus        59 DdNf~kAlssa~plLRl~   76 (80)
T cd06403          59 DDNFLKALSSANPLLRIF   76 (80)
T ss_pred             cHHHHHHHHcCCCceEEE
Confidence            4566666677775 5554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.28  E-value=0.021  Score=43.90  Aligned_cols=73  Identities=21%  Similarity=0.419  Sum_probs=49.5

Q ss_pred             eEEEecCcccceeeecCCC-CChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEcc
Q 026823          117 VKVSMDGAPYLRKVDLRMY-NTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       117 VKV~MdG~pigRKVDL~~~-~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  195 (232)
                      +|+.-+|. | |.+=+..- -+|.+|...+++.|..-    ..                 ....+.+.|.|.|||+.-+-
T Consensus         3 iK~~~g~D-i-R~~~~~~~~~t~~~L~~~v~~~F~~~----~~-----------------~~~~flIKYkD~dGDlVTIt   59 (81)
T cd06401           3 LKAQLGDD-I-RRIPIHNEDITYDELLLMMQRVFRGK----LG-----------------SSDDVLIKYKDEDGDLITIF   59 (81)
T ss_pred             EEEEeCCe-E-EEEeccCccccHHHHHHHHHHHhccc----cC-----------------CcccEEEEEECCCCCEEEec
Confidence            67766655 4 44444432 39999999999999851    11                 13478999999999999998


Q ss_pred             CC---ChhhhhhcceeeEEe
Q 026823          196 DV---PWGMFVESCKRLRIV  212 (232)
Q Consensus       196 Dv---PW~mFv~svkRLrIm  212 (232)
                      +-   -|..-....+||+|.
T Consensus        60 s~~dL~~A~~~~~~~~l~~~   79 (81)
T cd06401          60 DSSDLSFAIQCSRILKLTLF   79 (81)
T ss_pred             cHHHHHHHHhcCcceEEEEe
Confidence            74   444444445555553

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.82  E-value=0.019  Score=44.46  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=38.2

Q ss_pred             cccceeeecC--CCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEcc
Q 026823          124 APYLRKVDLR--MYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG  195 (232)
Q Consensus       124 ~pigRKVDL~--~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG  195 (232)
                      .|-||.+=++  ...|+.+|..++.+=|+.-..                     ....|.|.|.|.||||.|.-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~---------------------~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF---------------------ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc---------------------cCCcccEEEEcCCCCEEEEe
Confidence            4566665544  478999999999999976110                     13578999999999999864

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.69  E-value=0.046  Score=42.43  Aligned_cols=58  Identities=24%  Similarity=0.460  Sum_probs=43.8

Q ss_pred             eeEEEecC---cccceee--ecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCC
Q 026823          116 FVKVSMDG---APYLRKV--DLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGD  190 (232)
Q Consensus       116 ~VKV~MdG---~pigRKV--DL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGD  190 (232)
                      .||.+..|   .+=-|++  |=....+|++|...+.++|..                       +.+..|++.|.|.|||
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~-----------------------l~~~~ftlky~DeeGD   58 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS-----------------------LRGKNFQLFWKDEEGD   58 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc-----------------------cCCCcEEEEEECCCCC
Confidence            67888877   3333444  446677999999999999975                       1245799999999999


Q ss_pred             eEEccC
Q 026823          191 WMLVGD  196 (232)
Q Consensus       191 wMLVGD  196 (232)
                      ..-+..
T Consensus        59 lvtIss   64 (87)
T cd06402          59 LVAFSS   64 (87)
T ss_pred             EEeecC
Confidence            887654

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=95.46  E-value=0.043  Score=42.40  Aligned_cols=55  Identities=18%  Similarity=0.326  Sum_probs=44.3

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccC
Q 026823          117 VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD  196 (232)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD  196 (232)
                      ||++-.|.-+--.+|.  .-+|++|.+.+.+||...                       .+..|++.|.|.|||---+..
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~-----------------------~~q~ft~kw~DEEGDp~tiSS   57 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH-----------------------NDQPFTLKWIDEEGDPCTISS   57 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC-----------------------CCCcEEEEEECCCCCceeecC
Confidence            7899999866666666  678999999999999861                       245799999999999766543

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=94.76  E-value=0.1  Score=40.27  Aligned_cols=66  Identities=21%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             eEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEcc-
Q 026823          117 VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVG-  195 (232)
Q Consensus       117 VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVG-  195 (232)
                      -||+-+|.  .|++-...-=+|..|...|+.+|.+..                       . .+.|||.|.|||..-+- 
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~-----------------------~-~~~vtYiDeD~D~ITlss   56 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE-----------------------I-KVGVTYIDNDNDEITLSS   56 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh-----------------------h-HeEEEEEcCCCCEEEecc
Confidence            47888885  788888888999999999999998721                       1 27899999999987544 


Q ss_pred             CCChhhhhhccee
Q 026823          196 DVPWGMFVESCKR  208 (232)
Q Consensus       196 DvPW~mFv~svkR  208 (232)
                      |.=-+.|.+-..|
T Consensus        57 d~eL~d~~~~~~~   69 (82)
T cd06397          57 NKELQDFYRLSHR   69 (82)
T ss_pred             hHHHHHHHHhccc
Confidence            4555566554443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=92.26  E-value=0.51  Score=36.66  Aligned_cols=65  Identities=18%  Similarity=0.269  Sum_probs=48.7

Q ss_pred             ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEc
Q 026823          115 AFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLV  194 (232)
Q Consensus       115 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV  194 (232)
                      .=|||+-.|.  .|-|-+..-=+|++|...+.++|+.                         ...+.+-|.|. ||..-+
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-------------------------~~~~~iKykDE-GD~iti   54 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-------------------------KRRLKIKMKDD-GDMITM   54 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-------------------------CCceEEEEEcC-CCCccc
Confidence            3589998888  5667777777899999999999986                         12578999999 999888


Q ss_pred             cCC-Chhhhhhcce
Q 026823          195 GDV-PWGMFVESCK  207 (232)
Q Consensus       195 GDv-PW~mFv~svk  207 (232)
                      ++- =-++-+.++|
T Consensus        55 ~sq~DLd~Ai~~a~   68 (86)
T cd06408          55 GDQDDLDMAIDTAR   68 (86)
T ss_pred             cCHHHHHHHHHHHH
Confidence            763 3334444443

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 67/243 (27%)

Query: 6   LNMGFEETELRLGLPGNRVLSEGEGARKRGFSETVDLKLNLS---------SKDTSEKVK 56
           +      +          +LS+ E   ++ F E V L++N            +  S   +
Sbjct: 55  IMSKDAVSGTLRLF--WTLLSKQEEMVQK-FVEEV-LRINYKFLMSPIKTEQRQPSMMTR 110

Query: 57  SFQKEKNPLPRATDPPAKPPAKTQVVGWPPVRSFRKN--------------MLGV----- 97
            + ++++ L    D      AK  V    P    R+               +LG      
Sbjct: 111 MYIEQRDRLYN--DNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 98  ---VQKSSGEESDMAGGNNAAF-VKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFT 153
              V  S   +  M       F + +    +P   +  L M    Q L + +   ++S  
Sbjct: 167 ALDVCLSYKVQCKMDFK---IFWLNLKNCNSP---ETVLEM---LQKLLYQIDPNWTS-- 215

Query: 154 IGNCGSQGMKDFMNESK--LMDLLNGSDYVPTYEDKDGDWMLV-GDV----PWGMFVESC 206
             +  S  +K  ++  +  L  LL    Y            LV  +V     W  F  SC
Sbjct: 216 -RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------LVLLNVQNAKAWNAFNLSC 266

Query: 207 KRL 209
           K L
Sbjct: 267 KIL 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.27
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.16
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.94
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	95.0
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	90.69
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	82.6
1pqs_A	77	Cell division control protein 24; alpha and beta p	82.3
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	80.35

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.27  E-value=0.011  Score=44.90  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             CcceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeE
Q 026823          113 NAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWM  192 (232)
Q Consensus       113 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM  192 (232)
                      +..-||..-|..--=-.||-....+|++|..-|+++|.+                        ...+|++.|.|.|||++
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L------------------------~~~~f~i~Y~D~dGDLl   60 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLL   60 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEE
T ss_pred             CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC------------------------CCCCEEEEEECCCCCEe
Confidence            356788888887444456666778999999999999985                        13468999999999999


Q ss_pred             EccCC-Chhhhhhcce
Q 026823          193 LVGDV-PWGMFVESCK  207 (232)
Q Consensus       193 LVGDv-PW~mFv~svk  207 (232)
                      -+-+. -..+=+.++|
T Consensus        61 pInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           61 PLTNDDSLHRALASGP   76 (86)
T ss_dssp             ECCSHHHHHHHTTSSS
T ss_pred             eecCHHHHHHHHHhCC
Confidence            87654 4555556666

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.16  E-value=0.015  Score=44.15  Aligned_cols=58  Identities=19%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             CcceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeE
Q 026823          113 NAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWM  192 (232)
Q Consensus       113 ~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwM  192 (232)
                      +.+=|||+-.|.-+  -+.+...-+|++|...|.++|...                       .+..+++.|.|.|||+.
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-----------------------~~~~f~lky~DEeGD~i   59 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-----------------------NEQLFTMKWIDEEGDPC   59 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-----------------------SSCCEEEEECCSSSCCE
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-----------------------CCCeEEEEEECCCCCcc
Confidence            35678999999844  444444669999999999999851                       13468999999999987


Q ss_pred             Ecc
Q 026823          193 LVG  195 (232)
Q Consensus       193 LVG  195 (232)
                      -+-
T Consensus        60 tis   62 (89)
T 1vd2_A           60 TVS   62 (89)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            553

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.94  E-value=0.014  Score=45.39  Aligned_cols=62  Identities=15%  Similarity=0.270  Sum_probs=46.3

Q ss_pred             CcceeEEEecCc----ccceeeecCC-----------CCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCC
Q 026823          113 NAAFVKVSMDGA----PYLRKVDLRM-----------YNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNG  177 (232)
Q Consensus       113 ~~~~VKV~MdG~----pigRKVDL~~-----------~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~  177 (232)
                      .++-||++..|.    .=-|++-|..           -.+|++|...++++|...                       .+
T Consensus         4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-----------------------~~   60 (102)
T 2kkc_A            4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-----------------------RP   60 (102)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred             ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-----------------------CC
Confidence            467899999762    3446655542           248999999999999751                       24


Q ss_pred             CCceeEEEcCCCCeEEccCC
Q 026823          178 SDYVPTYEDKDGDWMLVGDV  197 (232)
Q Consensus       178 sey~ltYeDkeGDwMLVGDv  197 (232)
                      ..|.+.|.|.|||+.-+.+.
T Consensus        61 ~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           61 GGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             SCEEEEEECTTCCEEEECSH
T ss_pred             CcEEEEEECCCCCEEEecCH
Confidence            57999999999999877653

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=95.00  E-value=0.048  Score=43.35  Aligned_cols=62  Identities=16%  Similarity=0.265  Sum_probs=45.5

Q ss_pred             CcceeEEEecC----cccceeeecC-----------CCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCC
Q 026823          113 NAAFVKVSMDG----APYLRKVDLR-----------MYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNG  177 (232)
Q Consensus       113 ~~~~VKV~MdG----~pigRKVDL~-----------~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~  177 (232)
                      +++-||++..|    ..=-|++=|.           .-.+|++|...++++|...                       .+
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-----------------------~~   75 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-----------------------RP   75 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-----------------------CS
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-----------------------CC
Confidence            36789999975    2234555554           1359999999999999741                       24


Q ss_pred             CCceeEEEcCCCCeEEccCC
Q 026823          178 SDYVPTYEDKDGDWMLVGDV  197 (232)
Q Consensus       178 sey~ltYeDkeGDwMLVGDv  197 (232)
                      ..|.+.|.|.|||+.-+-..
T Consensus        76 ~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           76 GGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             SCEEEEEECTTCCEEEECSH
T ss_pred             CcEEEEEECCCCCEEEecCH
Confidence            57999999999998876653

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=90.69  E-value=1.1  Score=34.42  Aligned_cols=75  Identities=17%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             cceeEEEecCc------ccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcC
Q 026823          114 AAFVKVSMDGA------PYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDK  187 (232)
Q Consensus       114 ~~~VKV~MdG~------pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDk  187 (232)
                      +.-|||+-+..      .=.|.|=...--+|++|...+.+-|..++..                 + . .....+-|+|.
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-----------------~-i-~~~~klkYkDE   65 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-----------------N-I-SPITKIKYQDE   65 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-----------------C-C-CCCCCEEEECS
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-----------------c-c-cceeEEEEEcC
Confidence            46788887742      1236666778889999999999999863110                 0 0 12468999999


Q ss_pred             CCCeEEccC-CChhhhhhcce
Q 026823          188 DGDWMLVGD-VPWGMFVESCK  207 (232)
Q Consensus       188 eGDwMLVGD-vPW~mFv~svk  207 (232)
                      |||+...++ .=|+|-+.+++
T Consensus        66 dGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           66 DGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             SSCEEEECSHHHHHHHHHHHH
T ss_pred             CCCEEEEcCHHHHHHHHHHHH
Confidence            999987776 58999888763

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=82.60  E-value=1.7  Score=34.02  Aligned_cols=40  Identities=25%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             ecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccC
Q 026823          131 DLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD  196 (232)
Q Consensus       131 DL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD  196 (232)
                      ||+..-.|.+|..-..+-|...                          +-+|-|.|.||||.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~--------------------------DIaLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE--------------------------DIALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS--------------------------SEEEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhccc--------------------------ceeeeeecCCCCEEEEcc
Confidence            6788889999999999999751                          347899999999965433

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=82.30  E-value=1.2  Score=32.72  Aligned_cols=58  Identities=21%  Similarity=0.327  Sum_probs=42.2

Q ss_pred             ecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccC-CChhhhhhcce
Q 026823          131 DLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD-VPWGMFVESCK  207 (232)
Q Consensus       131 DL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD-vPW~mFv~svk  207 (232)
                      =...--+|++|...+.+-|..+ .    +.+              ......+-|+|.|||+...++ .=|+|=+.++|
T Consensus         7 ~V~~~i~f~~L~~kI~~kl~~~-~----~~~--------------~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~   65 (77)
T 1pqs_A            7 LVEKVWNFDDLIMAINSKISNT-H----NNN--------------ISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLA   65 (77)
T ss_dssp             ECTTCCCSHHHHHHHHHHTTTT-T----SSC--------------SCSTTCCEEEETTTEEEECCSTTHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHccc-c----ccc--------------ccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHH
Confidence            3445568999999999999853 1    111              023568999999999987665 68999888764

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=80.35  E-value=4.7  Score=30.42  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=41.5

Q ss_pred             ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEc
Q 026823          115 AFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLV  194 (232)
Q Consensus       115 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV  194 (232)
                      .-+||.--|...=--|.-..--++++|-..+..+|+.                          +.++|+|-|.|||-.-|
T Consensus         7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L--------------------------~~~~ikY~DEenD~v~i   60 (87)
T 2bkf_A            7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--------------------------NTIQIKYLDEENEEVSI   60 (87)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC--------------------------SSEEEEEECTTSCEEEE
T ss_pred             EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCC--------------------------CceEEEEEcCCCCEEEE
Confidence            4578899998554446444477899999999999975                          14689999999998755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.96
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.51
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	89.22

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00083  Score=49.07  Aligned_cols=64  Identities=11%  Similarity=0.082  Sum_probs=50.5

Q ss_pred             ceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEc
Q 026823          115 AFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLV  194 (232)
Q Consensus       115 ~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLV  194 (232)
                      .=|||+..|..+=-+|-+..-.+|.+|...|...|..   +                       ++.|.|.|.|+||.++
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l---~-----------------------~~~lkY~Ddd~e~v~l   58 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL---N-----------------------TIQIKYLDEENEEVSI   58 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC---S-----------------------SEEEEEECTTSCEEEE
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc---c-----------------------cceEEEEcCCCCEEEE
Confidence            4589999998766678777889999999999999985   1                       2679999999999887


Q ss_pred             c-CCChhhhhh
Q 026823          195 G-DVPWGMFVE  204 (232)
Q Consensus       195 G-DvPW~mFv~  204 (232)
                      . |.=-++.+.
T Consensus        59 ~~d~dl~E~~~   69 (85)
T d2bkfa1          59 NSQGEYEEALK   69 (85)
T ss_dssp             CSHHHHHHHHH
T ss_pred             ecHHHHHHHHH
Confidence            5 334444444

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.013  Score=41.77  Aligned_cols=72  Identities=11%  Similarity=0.141  Sum_probs=51.9

Q ss_pred             CCCcceeEEEecCcccceeeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCC
Q 026823          111 GNNAAFVKVSMDGAPYLRKVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGD  190 (232)
Q Consensus       111 ~~~~~~VKV~MdG~pigRKVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGD  190 (232)
                      ..+..=|||+..+.-+-  +=|..--+|.+|...+.+.|+.   +                       .++|-|+|.|||
T Consensus         9 ~~~~ikVKv~~~~D~~~--~~l~~~it~~dL~~kI~~rf~~---~-----------------------~~~lkY~Dedgd   60 (85)
T d1ip9a_           9 GLKTTKIKFYYKDDIFA--LMLKGDTTYKELRSKIAPRIDT---D-----------------------NFKLQTKLFDGS   60 (85)
T ss_dssp             CCCCEEEEECBTTCCEE--EEECSCCCHHHHHHHHHHHHTS---S-----------------------CEEEEECCSSSC
T ss_pred             CCCCEEEEEEECCcEEE--EEeCCCCCHHHHHHHHHHHhCC---C-----------------------ceEEEEEcCCCC
Confidence            34567899999888444  4445567899999999999964   1                       378999999999


Q ss_pred             eEEccC-CChhhhhhcceeeE
Q 026823          191 WMLVGD-VPWGMFVESCKRLR  210 (232)
Q Consensus       191 wMLVGD-vPW~mFv~svkRLr  210 (232)
                      |..+-+ .=+++-+....||.
T Consensus        61 ~v~i~sD~Dl~~ai~~~~kl~   81 (85)
T d1ip9a_          61 GEEIKTDSQVSNIIQAKLKIS   81 (85)
T ss_dssp             CSCCCSHHHHHHHHHTTCCEE
T ss_pred             EEEEeCHHHHHHHHHhcCcEE
Confidence            986544 45565555544444

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.54  Score=33.46  Aligned_cols=60  Identities=18%  Similarity=0.251  Sum_probs=45.6

Q ss_pred             eeecCCCCChHHHHHHHHHhhccccCCCcCCCCCcccchhhhhhhccCCCCceeEEEcCCCCeEEccC-CChhhhhhcce
Q 026823          129 KVDLRMYNTYQDLYHALGKMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGD-VPWGMFVESCK  207 (232)
Q Consensus       129 KVDL~~~~sY~~L~~aLe~MF~~~~~~~~~~~g~~~~~~e~~l~d~~~~sey~ltYeDkeGDwMLVGD-vPW~mFv~svk  207 (232)
                      .+|....++|++...-|+.|-.+                        .+.++++.|.|.+||.+-+-. .-+.-=+.+++
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l------------------------~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQI------------------------PGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP   72 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTC------------------------TTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred             eeccccccCHHHHHHHHHHHcCC------------------------CCCcEEEEEecCCCCcccccCchHHHHHHHhcC
Confidence            57778889999999999999875                        135789999999999998754 44555556666


Q ss_pred             e-eEEe
Q 026823          208 R-LRIV  212 (232)
Q Consensus       208 R-LrIm  212 (232)
                      - |||+
T Consensus        73 PlLRi~   78 (82)
T d1wmhb_          73 PPLRLL   78 (82)
T ss_dssp             SCEEEE
T ss_pred             CceeEe
Confidence            3 4543