Citrus Sinensis ID: 026858
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 232 | 2.2.26 [Sep-21-2011] | |||||||
| Q9H867 | 229 | Protein-lysine methyltran | yes | no | 0.866 | 0.877 | 0.313 | 2e-21 | |
| Q8C436 | 228 | Protein-lysine methyltran | yes | no | 0.849 | 0.864 | 0.313 | 2e-20 | |
| Q8WXB1 | 218 | Protein-lysine methyltran | no | no | 0.840 | 0.894 | 0.269 | 5e-15 | |
| A4IGU3 | 215 | Protein-lysine methyltran | no | no | 0.788 | 0.851 | 0.287 | 9e-13 | |
| Q5BLD8 | 218 | Protein-lysine methyltran | yes | no | 0.646 | 0.688 | 0.302 | 2e-12 | |
| Q5RE14 | 236 | Protein-lysine methyltran | no | no | 0.844 | 0.830 | 0.251 | 3e-12 | |
| Q9CQL0 | 218 | Protein-lysine methyltran | no | no | 0.629 | 0.669 | 0.296 | 3e-11 | |
| A4FV42 | 218 | Protein-lysine methyltran | yes | no | 0.612 | 0.651 | 0.294 | 3e-11 | |
| Q8CDZ2 | 244 | Protein-lysine methyltran | no | no | 0.715 | 0.680 | 0.277 | 2e-10 | |
| Q96AZ1 | 226 | Protein-lysine methyltran | no | no | 0.784 | 0.805 | 0.251 | 5e-10 |
| >sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 16/217 (7%)
Query: 11 LPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRR 70
L RD + Q S VG VW ++VL+K++E P + + +H L +RR
Sbjct: 20 LEKRDGTVLRLQQYSSGGVGCVVWDAAIVLSKYLET----PEFSGDG-AHAL----SRRS 70
Query: 71 AIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQ 130
+ELG+G GA G+ LG AD+V+TD+ + LK N+ NK ++ S++ VL W
Sbjct: 71 VLELGSGTGAVGLMAATLG-ADVVVTDLEELQDLLKMNINMNKHLVTGSVQAKVLKWG-- 127
Query: 131 DQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKL 186
++I P D ++ AD +Y EES L++ ++ + + ++ Y+ R+ PE K
Sbjct: 128 EEIEGFPSPPDFILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKK 187
Query: 187 FWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKK 223
++E+ F EK+P E +Y E+ + +RKKK
Sbjct: 188 YFELLQLDFDFEKIPLEKHDEEYRSEDIHIIYIRKKK 224
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2 | Back alignment and function description |
|---|
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 17/214 (7%)
Query: 14 RDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIE 73
RD + Q GS VG VW ++VL+K++E P + + +H L +RR +E
Sbjct: 23 RDGTVLRLQQYGSGGVGCVVWDAAIVLSKYLET----PGFSGDG-AHAL----SRRSVLE 73
Query: 74 LGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133
LG+G GA G+ LG AD+++TD+ + LK N+ NK ++ S++ VL W + I
Sbjct: 74 LGSGTGAVGLMAATLG-ADVIVTDLEELQDLLKMNIDMNKHLVTGSVQAKVLKWG--EDI 130
Query: 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWE 189
L P D ++ AD +Y EES L++ ++ L + ++ Y+ R+ PE K ++E
Sbjct: 131 EDLMSP-DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFE 189
Query: 190 MCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKK 223
+ F E++P + +Y E+ + +RKKK
Sbjct: 190 LLQLDFDFEEIPLDKHDEEYRSEDIHIVYIRKKK 223
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 31/226 (13%)
Query: 7 PVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHS 66
P+ + + I+QD + V VW ++VL+ ++E A
Sbjct: 20 PLATFSFANHTIQIRQDWRHLGVAAVVWDAAIVLSTYLEMGA---------------VEL 64
Query: 67 TRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKP--VLNKSLKTSV 124
R A+ELGAG G G+ LLG A + +TD + LK N++ N P + K++ +
Sbjct: 65 RGRSAVELGAGTGLVGIVAALLG-AHVTITDRKVALEFLKSNVQANLPPHIQTKTVVKEL 123
Query: 125 LYWNNQDQINALKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEA 183
+ N + + P FDL++ AD++Y+EE+ L++ +E L ++ V+LL ++R E
Sbjct: 124 TWGQN---LGSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRY-ER 179
Query: 184 HKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEEEEE 229
F M F + KV ++ E DV+I +K+ ++E+
Sbjct: 180 DNNFLAMLERQFTVRKVHYDP--------EKDVHIYEAQKRNQKED 217
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 95/212 (44%), Gaps = 29/212 (13%)
Query: 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAG 77
+ I+QD + V VW +LVL ++E H IELGAG
Sbjct: 31 IEIKQDWKQLGVAAVVWDAALVLCMYLESEG---------------IHLQNSSVIELGAG 75
Query: 78 CGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSL-KTSVLYWNNQDQINAL 136
G G+ LLG A + +TD M L+ N++ N P SL + SV N +
Sbjct: 76 TGLVGIVAALLG-AQVTITDRDLAMEFLRMNVRDNIP--KDSLHRVSVRALNWGKSLEEF 132
Query: 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196
+D ++ AD++Y+EE+ L++ L + V+LL +LR H F EM F
Sbjct: 133 -STYDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRLRYQRDHD-FLEMMKLHFT 190
Query: 197 IEKVPHEDLHPDYGYEETDVYILRKKKKEEEE 228
I V ++ + TDV+I R + ++ +E
Sbjct: 191 IADVYYD--------KNTDVHIFRAQLRQRKE 214
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Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPV-LNKSLKTSVLYW 127
+R IELGAG G G+ LLG A++ +TD P + L N+ N P K+++ S L W
Sbjct: 67 KRVIELGAGTGLVGIVAALLG-ANVTITDREPALEFLTANVHENIPQGRQKAVQVSELTW 125
Query: 128 NNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLF 187
+ + +DL++ AD+VY+EE+ L++ +E L + D VVLL ++R +
Sbjct: 126 GENLDLYP-QGGYDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCRIRYERDERFL 184
Query: 188 WEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEEEEE 229
E L ++ +++H D + D+++ R K + E
Sbjct: 185 TE------LRQRFSVQEVHYD---SQRDIHVYRAVKNKSNTE 217
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Probable methyltransferase. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RE14|MT21A_PONAB Protein-lysine methyltransferase METTL21A OS=Pongo abelii GN=METTL21A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 47/243 (19%)
Query: 7 PVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHS 66
P+ + + I+QD + V VW ++VL+ ++E A
Sbjct: 20 PLKTFSFANHTIQIRQDWRHLGVAAVVWDAAIVLSTYLEMGA---------------VEL 64
Query: 67 TRRRAIELGAGCGAAGMAFYLLGL-----------------ADIVLTDISPVMPALKHNL 109
R A+ELGAG G G+ LL L A + +TD + LK N+
Sbjct: 65 RGRSAVELGAGTGLVGIVAALLALKSSMKPLLVHCLLFFSGAHVTITDRKVALEFLKSNV 124
Query: 110 KRNKP--VLNKSLKTSVLYWNNQDQINALKP-PFDLVIAADVVYIEESAAQLVRAMEALV 166
+ N P + K++ + + N + + P FDL++ AD++Y+EE+ L++ +E L
Sbjct: 125 QANLPPHIQPKTVVKELTWGQN---LGSFSPGEFDLILGADIIYLEETFTDLLQTLEHLC 181
Query: 167 ADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEE 226
++ V+LL ++R E F M F + KV ++ E DV+I +K+ +
Sbjct: 182 SNHSVILLACRIRY-ERDNNFLAMLERQFTVRKVHYDP--------EKDVHIYEAQKRNQ 232
Query: 227 EEE 229
+E+
Sbjct: 233 KED 235
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Probable methyltransferase. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9CQL0|MT21A_MOUSE Protein-lysine methyltransferase METTL21A OS=Mus musculus GN=Mettl21A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 71 AIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKP--VLNKSLKTSVLYWN 128
A+ELGAG G G+ LLG A + +TD + LK N++ N P + K++ + +
Sbjct: 69 AVELGAGTGLVGIVAALLG-AQVTITDRKVALEFLKSNVEANLPPHIQPKAVVKELTWGQ 127
Query: 129 NQDQINALKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLF 187
N + + P FDL++ ADV+Y+E++ L++ + L +++ V+LL ++R E F
Sbjct: 128 N---LESFSPGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRY-ERDSNF 183
Query: 188 WEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEEEEE 229
M F + KV ++ E DV+I + +K+ + E+
Sbjct: 184 LTMLERQFTVSKVHYD--------PEKDVHIYKAQKRNQRED 217
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4FV42|MT21A_BOVIN Protein-lysine methyltransferase METTL21A OS=Bos taurus GN=METTL21A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 14/156 (8%)
Query: 71 AIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKP--VLNKSLKTSVLYWN 128
A+ELGAG G G+ LLG A + +TD + LK N++ N P + K++ + +
Sbjct: 69 AVELGAGTGLVGIVAALLG-AHVTITDRKVALEFLKSNVQANLPPHIQPKAVVKELTWGQ 127
Query: 129 NQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW 188
N + + FDL++ AD++Y+EE+ L++ +E L ++ VVLL ++R + F
Sbjct: 128 NLGRFSP--GEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVVLLACRIRYERDYN-FL 184
Query: 189 EMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKK 224
M F + KV ++ E DV+I + +++
Sbjct: 185 AMLERQFTVSKVHYDS--------EKDVHIYKAQRR 212
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Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 20 IQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCG 79
IQ G G VWP +LVL F+E +H ++ + IE+GAG G
Sbjct: 55 IQITEGKDCYGAFVWPSALVLCYFLE-------------THAKQYNMVDKNVIEIGAGTG 101
Query: 80 AAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSL-KTSVLYWNNQDQINALKP 138
+ LLG A ++ TD+ ++ L++N+ RN + K L + L W N +
Sbjct: 102 LVSIVASLLG-ARVIATDLPELLGNLQYNISRNTKMKCKHLPQVKELSWGVALDRNFPRS 160
Query: 139 P--FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196
FD ++AADVVY +L+ + L + ++L + R + +K F + E+F
Sbjct: 161 SNNFDYILAADVVYAHPFLEELLMTFDHLCKETTIILWAMRFRLEKENK-FVDKFKELFD 219
Query: 197 IEKV 200
+E++
Sbjct: 220 LEEI 223
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96AZ1|MT21B_HUMAN Protein-lysine methyltransferase METTL21B OS=Homo sapiens GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 17 LLSIQQDNGS-MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELG 75
+L+I Q+ GS + V VW +L L + E S +DF ++ IELG
Sbjct: 39 VLTITQNFGSRLGVAARVWDAALSLCNYFE-------------SQNVDFRG--KKVIELG 83
Query: 76 AGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA 135
AG G G+ L G D+ +TD+ + ++ N++ N P ++ + L W +
Sbjct: 84 AGTGIVGILAALQG-GDVTITDLPLALEQIQGNVQANVPAGGQA-QVRALSWGIDHHV-- 139
Query: 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE-MCAEV 194
+DLV+ AD+VY+E + L+ ++ L G + L ++R + F++ + +
Sbjct: 140 FPANYDLVLGADIVYLEPTFPLLLGTLQHLCRPHGTIYLASKMRKEHGTESFFQHLLPQH 199
Query: 195 FLIEKVPHEDLHPDYGYEETDVYILRKKKKE 225
F +E + E+ +V I R + +E
Sbjct: 200 FQLELAQRD--------EDENVNIYRARHRE 222
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 232 | ||||||
| 255553611 | 223 | conserved hypothetical protein [Ricinus | 0.952 | 0.991 | 0.767 | 8e-98 | |
| 15241427 | 234 | S-adenosyl-L-methionine-dependent methyl | 0.987 | 0.978 | 0.744 | 3e-96 | |
| 297794991 | 238 | hypothetical protein ARALYDRAFT_917203 [ | 0.982 | 0.957 | 0.714 | 6e-93 | |
| 225446467 | 225 | PREDICTED: methyltransferase-like protei | 0.948 | 0.977 | 0.735 | 7e-93 | |
| 224132864 | 227 | predicted protein [Populus trichocarpa] | 0.956 | 0.977 | 0.731 | 7e-92 | |
| 356549882 | 222 | PREDICTED: methyltransferase-like protei | 0.956 | 1.0 | 0.712 | 4e-84 | |
| 147819362 | 199 | hypothetical protein VITISV_003667 [Viti | 0.836 | 0.974 | 0.731 | 1e-80 | |
| 449441662 | 227 | PREDICTED: methyltransferase-like protei | 0.961 | 0.982 | 0.694 | 2e-76 | |
| 116782993 | 233 | unknown [Picea sitchensis] | 0.943 | 0.939 | 0.576 | 8e-72 | |
| 195655995 | 224 | hypothetical protein [Zea mays] gi|41394 | 0.948 | 0.982 | 0.532 | 1e-54 |
| >gi|255553611|ref|XP_002517846.1| conserved hypothetical protein [Ricinus communis] gi|223542828|gb|EEF44364.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 362 bits (928), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 172/224 (76%), Positives = 188/224 (83%), Gaps = 3/224 (1%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSH 60
MKFTDSPVIELPI D LLS+QQDNGSMHVGTSVWPCSL+LAKF +RW+ ++NPYS
Sbjct: 1 MKFTDSPVIELPIGDKLLSVQQDNGSMHVGTSVWPCSLILAKFADRWS---TASSNPYST 57
Query: 61 LLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSL 120
L+ F S RA+ELGAGCG AGMAFYLLGL DI+LTDI+PVMPALKHNLKRNK L K L
Sbjct: 58 LVGFRSKPCRAVELGAGCGVAGMAFYLLGLTDIILTDIAPVMPALKHNLKRNKETLGKML 117
Query: 121 KTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180
KTS+LYW N DQI AL PPFD+V+A DVVYIEES +LV AMEALVADDGV+LLGYQLRS
Sbjct: 118 KTSILYWKNGDQIKALNPPFDVVLATDVVYIEESVGELVGAMEALVADDGVILLGYQLRS 177
Query: 181 PEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKK 224
PEA FWEMC EVF IEKVPHEDLHPDY YEETDVYI RK+ K
Sbjct: 178 PEADIKFWEMCREVFEIEKVPHEDLHPDYAYEETDVYIFRKRNK 221
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241427|ref|NP_199230.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|9759518|dbj|BAB10984.1| unnamed protein product [Arabidopsis thaliana] gi|18252937|gb|AAL62395.1| putative protein [Arabidopsis thaliana] gi|30023714|gb|AAP13390.1| At5g44170 [Arabidopsis thaliana] gi|332007686|gb|AED95069.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 357 bits (915), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 175/235 (74%), Positives = 195/235 (82%), Gaps = 6/235 (2%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTAT----N 56
MKFTDSPVI+L + LSIQQDNGSMHVGTSVWPCSL+L+KF ERW+ L ++++ N
Sbjct: 1 MKFTDSPVIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPN 60
Query: 57 PYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL 116
PY+ L DF RRR IELG GCG AGMAFYLLGL +IVLTDI+PVMPALKHNLKRNK L
Sbjct: 61 PYAELFDFR--RRRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTAL 118
Query: 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176
KSLKTS++YWNN+DQI+ALKPPFDLVIAADVVYIEES QLV AME LVADDG VLLGY
Sbjct: 119 GKSLKTSIVYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLGY 178
Query: 177 QLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEEEEENV 231
Q+RSPEA KLFWE+C VF IEKVPHE LH DY YEETDVYI RKK K+ E E+V
Sbjct: 179 QIRSPEADKLFWELCDIVFKIEKVPHEHLHSDYAYEETDVYIFRKKVKKNEAESV 233
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297794991|ref|XP_002865380.1| hypothetical protein ARALYDRAFT_917203 [Arabidopsis lyrata subsp. lyrata] gi|297311215|gb|EFH41639.1| hypothetical protein ARALYDRAFT_917203 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 346 bits (887), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 170/238 (71%), Positives = 193/238 (81%), Gaps = 10/238 (4%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTAT----- 55
MKFTDSPVI+L + LS QQDNGSMHVGTSVWPCSL+L+KF ERW+ L ++++
Sbjct: 1 MKFTDSPVIDLTVNGTKLSFQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSSSSTT 60
Query: 56 ---NPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRN 112
NPY+ L DF RRR IELG GCG AGMAF+LLGL +IVLTDI+PVMPALKHNLKRN
Sbjct: 61 TSPNPYAELFDFR--RRRGIELGTGCGVAGMAFHLLGLTEIVLTDIAPVMPALKHNLKRN 118
Query: 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVV 172
K L KSLKTS++YWNN+DQI+ALKPPFDLVIAADVVYIEES QLV AME LVADDG V
Sbjct: 119 KTALGKSLKTSIVYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAV 178
Query: 173 LLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEEEEEN 230
LLGYQ+RSPEA KLFWE+C VF IEKVPHE LH +Y YEETDVYI RKK K+ + E+
Sbjct: 179 LLGYQIRSPEADKLFWELCDVVFKIEKVPHEHLHHEYAYEETDVYIFRKKVKKNDAES 236
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446467|ref|XP_002277665.1| PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 167/227 (73%), Positives = 191/227 (84%), Gaps = 7/227 (3%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTAT----N 56
MKFTDSP IEL +R A LSI QDNGSMHVGTSVWPCSLVL KF ERW+PL ++++ N
Sbjct: 1 MKFTDSPTIELQVRSAHLSIHQDNGSMHVGTSVWPCSLVLVKFAERWSPLTSSSSSSTPN 60
Query: 57 PYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL 116
PY+HLLDF + +RA+ELG GCG A M +LLGL D+VLTDI+PVMPALKHNLKRNKP L
Sbjct: 61 PYAHLLDF--SNKRAVELGCGCGLASMGLFLLGLNDVVLTDIAPVMPALKHNLKRNKPSL 118
Query: 117 -NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175
NK+LKT+ LYW N QINALKPPFD+VIA DVVYIEES A LV AMEALV+D+GVVLLG
Sbjct: 119 HNKTLKTAQLYWTNPAQINALKPPFDVVIATDVVYIEESVASLVAAMEALVSDNGVVLLG 178
Query: 176 YQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKK 222
YQLRSPEA +LFWE+CA VF IEK+PHEDLHP+Y YEE DV++LRKK
Sbjct: 179 YQLRSPEADRLFWELCARVFAIEKIPHEDLHPEYAYEEADVFVLRKK 225
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132864|ref|XP_002327899.1| predicted protein [Populus trichocarpa] gi|222837308|gb|EEE75687.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 342 bits (877), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 166/227 (73%), Positives = 184/227 (81%), Gaps = 5/227 (2%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPL---PNTATNP 57
MKFT SP I+L I+D LS+Q+DN S HVGTSVW SLVL+KF++RW PL P T N
Sbjct: 1 MKFTGSPGIDLKIKDKTLSLQEDNSSFHVGTSVWSGSLVLSKFLDRWTPLSTNPTTTPNR 60
Query: 58 YSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLN 117
YS LLDFH+ RRAIELG GCG GMA YLLGL DIVLTDI PVMPALKHNLKRNK VL
Sbjct: 61 YSTLLDFHN--RRAIELGTGCGVTGMALYLLGLTDIVLTDIHPVMPALKHNLKRNKQVLG 118
Query: 118 KSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177
K LKT++LYW+N+DQIN + PPFD VIAADVVYIEES LV+AME LV DDGVVLLGYQ
Sbjct: 119 KMLKTAILYWSNEDQINGVNPPFDYVIAADVVYIEESVGALVKAMEMLVKDDGVVLLGYQ 178
Query: 178 LRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKK 224
LRSPEA KLFWE+C E F+IEKVP EDLHP+Y YEETDV+I RKKKK
Sbjct: 179 LRSPEADKLFWEICGEAFVIEKVPKEDLHPEYCYEETDVFIFRKKKK 225
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549882|ref|XP_003543319.1| PREDICTED: methyltransferase-like protein 21A-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 316 bits (810), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 161/226 (71%), Positives = 185/226 (81%), Gaps = 4/226 (1%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSH 60
MKFTDSPVIEL + DA+LS+QQDNGSMHVGT+VWPCSLVL KF ERW P + NPY+
Sbjct: 1 MKFTDSPVIELAVNDAVLSLQQDNGSMHVGTTVWPCSLVLVKFAERWGP--PSDNNPYAR 58
Query: 61 LLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSL 120
+LDF +RA+ELG GCG AGM YLLGL D++LTDI+PVMPALK NLK NKP+L K+L
Sbjct: 59 VLDFQG--KRAVELGTGCGVAGMGLYLLGLTDLLLTDIAPVMPALKRNLKVNKPILRKAL 116
Query: 121 KTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180
K SVLYWNN QI AL PPFD VIA DVVYI ES LV AME LV+DDGVVLLGYQLR+
Sbjct: 117 KHSVLYWNNPQQIAALNPPFDFVIATDVVYIPESVPSLVSAMETLVSDDGVVLLGYQLRA 176
Query: 181 PEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEE 226
PEAH+LFWE+C +VF +EKVPHE LHPDY YEETDVY+L+KK K++
Sbjct: 177 PEAHELFWELCQQVFHVEKVPHEHLHPDYAYEETDVYLLKKKNKKQ 222
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147819362|emb|CAN60171.1| hypothetical protein VITISV_003667 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/201 (73%), Positives = 170/201 (84%), Gaps = 7/201 (3%)
Query: 27 MHVGTSVWPCSLVLAKFVERWAPLPNTAT----NPYSHLLDFHSTRRRAIELGAGCGAAG 82
MHVGTSVWPCSLVL KF ERW+PL ++++ NPY+HLLDF + +RA+ELG GCG A
Sbjct: 1 MHVGTSVWPCSLVLVKFAERWSPLTSSSSSSTPNPYAHLLDF--SNKRAVELGCGCGLAS 58
Query: 83 MAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFD 141
M +LLGL D+VLTDI+PVMPALKHNLKRNKP L NK+LKT+ LYW N QINALKPPFD
Sbjct: 59 MGLFLLGLNDVVLTDIAPVMPALKHNLKRNKPSLHNKTLKTAQLYWTNPAQINALKPPFD 118
Query: 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201
+VIA DVVYIEES A LV AMEALV+D+GVVLLGYQLRSPEA +LFWE+CA VF IEK+P
Sbjct: 119 VVIATDVVYIEESVASLVAAMEALVSDNGVVLLGYQLRSPEADRLFWELCARVFAIEKIP 178
Query: 202 HEDLHPDYGYEETDVYILRKK 222
HEDLHP+Y YEE DV++LRKK
Sbjct: 179 HEDLHPEYAYEEADVFVLRKK 199
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441662|ref|XP_004138601.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus] gi|449490308|ref|XP_004158566.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/226 (69%), Positives = 187/226 (82%), Gaps = 3/226 (1%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSH 60
MKFTDSPVI+L + LS+QQDNGSMHVGTSVWPCSLVL KFV+RW+ + T NPYS
Sbjct: 1 MKFTDSPVIDLSVGGTALSLQQDNGSMHVGTSVWPCSLVLVKFVDRWSSITPTE-NPYSS 59
Query: 61 LLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSL 120
LLDF +RAIE+G GCGAAGM YLLGL D++LTDISPVMPALKHN+KRNKPVL K+L
Sbjct: 60 LLDFRG--KRAIEIGCGCGAAGMGLYLLGLTDLLLTDISPVMPALKHNIKRNKPVLKKAL 117
Query: 121 KTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180
K SVLYWNN QI AL PPFD+VIA DVVYIEE+ L+ M+ L+ ++G+VLLGYQLRS
Sbjct: 118 KHSVLYWNNPAQIAALNPPFDIVIATDVVYIEETVGPLISTMDTLIGNNGIVLLGYQLRS 177
Query: 181 PEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKEE 226
PEA +LFWEMC +F IEK+PH+DLHP++ YEE+DVY+LRKKK+E+
Sbjct: 178 PEADELFWEMCDRIFQIEKIPHQDLHPEFAYEESDVYVLRKKKEEK 223
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116782993|gb|ABK22754.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 135/234 (57%), Positives = 164/234 (70%), Gaps = 15/234 (6%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNP-YS 59
MKFTDSP+IELP+ LL I+QDNGSMHVGTSVWPCSLVL KFVER PN NP Y+
Sbjct: 1 MKFTDSPIIELPVGHDLLRIEQDNGSMHVGTSVWPCSLVLVKFVERCLLAPNPNPNPVYA 60
Query: 60 HLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKS 119
+ F + +R IELG GCG AGM +LGL D+VLTDI+PV+PALK N+K+N + +
Sbjct: 61 QIFQFKN--KRGIELGTGCGVAGMGLAMLGL-DMVLTDIAPVLPALKRNVKKNTAATSLA 117
Query: 120 -----------LKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168
+K S LYWNN+ QI LKPPFD ++A DVVY+E L+ M L
Sbjct: 118 SAGKPGSGVGRVKISQLYWNNEKQIQVLKPPFDFIVATDVVYLENIVEPLISTMNVLAGA 177
Query: 169 DGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKK 222
D V+LLGYQ+RSPEAH+LFW++C F ++KV HEDLH +Y YEETDVYILRKK
Sbjct: 178 DTVILLGYQIRSPEAHQLFWQICPNYFTVDKVSHEDLHREYAYEETDVYILRKK 231
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|195655995|gb|ACG47465.1| hypothetical protein [Zea mays] gi|413946517|gb|AFW79166.1| hypothetical protein ZEAMMB73_377166 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/229 (53%), Positives = 162/229 (70%), Gaps = 9/229 (3%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSH 60
M+FT SPV+ELP+ A+L+ +QDN S VGTSVWP SLVL KFVER P P++
Sbjct: 1 MRFTASPVVELPVSGAVLTFEQDNDSFEVGTSVWPSSLVLVKFVERCIRDPAL---PFAD 57
Query: 61 LLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSL 120
+L F TR A+ELG+GCG AG+ LGL D+VLTDI+ V+PAL+ NL+RN+ L ++
Sbjct: 58 VLRFPGTR--AVELGSGCGPAGLGLSRLGLTDLVLTDIAAVLPALRRNLRRNRVHLARAP 115
Query: 121 KTSVLYWNNQDQINALKPP--FDLVIAADVVYIEESAAQLVRAMEALV-ADDGVVLLGYQ 177
+ + L+WN + L P FDLV+AADVVY++ES L+ AM+AL A+ GVVLLGYQ
Sbjct: 116 RLAQLHWNCPAHLATLATPRRFDLVVAADVVYVQESVPHLIAAMDALADAERGVVLLGYQ 175
Query: 178 LRSPEAHKLFWEMCAEVF-LIEKVPHEDLHPDYGYEETDVYILRKKKKE 225
+RSPEAH++FWE VF +IEKV E L P+Y YEE+DV+ILR+ ++
Sbjct: 176 IRSPEAHQVFWETVPAVFPVIEKVAREHLDPEYAYEESDVFILRRSPRQ 224
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 232 | ||||||
| TAIR|locus:2167618 | 234 | AT5G44170 "AT5G44170" [Arabido | 0.939 | 0.931 | 0.758 | 4.1e-88 | |
| RGD|1306228 | 274 | Mettl21d "methyltransferase li | 0.823 | 0.697 | 0.338 | 9e-22 | |
| UNIPROTKB|Q9H867 | 229 | METTL21D "Protein-lysine methy | 0.827 | 0.838 | 0.314 | 1e-20 | |
| MGI|MGI:2684917 | 228 | Mettl21d "methyltransferase li | 0.823 | 0.837 | 0.319 | 1.7e-20 | |
| TAIR|locus:2197234 | 316 | AT1G73320 "AT1G73320" [Arabido | 0.818 | 0.601 | 0.298 | 1.6e-16 | |
| ZFIN|ZDB-GENE-060825-19 | 223 | mettl21d "methyltransferase li | 0.758 | 0.789 | 0.296 | 3.7e-16 | |
| UNIPROTKB|Q8WXB1 | 218 | METTL21A "Protein-lysine methy | 0.775 | 0.825 | 0.296 | 1.3e-15 | |
| RGD|1311824 | 218 | Mettl21a "methyltransferase li | 0.780 | 0.830 | 0.273 | 4.2e-15 | |
| ZFIN|ZDB-GENE-050320-145 | 218 | mettl21a "methyltransferase li | 0.771 | 0.821 | 0.283 | 1.4e-14 | |
| MGI|MGI:1914349 | 218 | Mettl21a "methyltransferase li | 0.780 | 0.830 | 0.273 | 3.8e-14 |
| TAIR|locus:2167618 AT5G44170 "AT5G44170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 170/224 (75%), Positives = 186/224 (83%)
Query: 1 MKFTDSPVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPN----TATN 56
MKFTDSPVI+L + LSIQQDNGSMHVGTSVWPCSL+L+KF ERW+ L + T+ N
Sbjct: 1 MKFTDSPVIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPN 60
Query: 57 PYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL 116
PY+ L DF RRR IELG GCG AGMAFYLLGL +IVLTDI+PVMPALKHNLKRNK L
Sbjct: 61 PYAELFDFR--RRRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTAL 118
Query: 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176
KSLKTS++YWNN+DQI+ALKPPFDLVIAADVVYIEES QLV AME LVADDG VLLGY
Sbjct: 119 GKSLKTSIVYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLGY 178
Query: 177 QLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILR 220
Q+RSPEA KLFWE+C VF IEKVPHE LH DY YEETDVYI R
Sbjct: 179 QIRSPEADKLFWELCDIVFKIEKVPHEHLHSDYAYEETDVYIFR 222
|
|
| RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 71/210 (33%), Positives = 110/210 (52%)
Query: 14 RDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIE 73
RD Q GS VG VW ++VLAK++E P + + +H L +RR +E
Sbjct: 69 RDGTALRLQQYGSGGVGCVVWDAAIVLAKYLET----PGFSGDG-AHAL----SRRSVLE 119
Query: 74 LGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133
LG+G GA G+ LG AD+++TD+ + LK N+ NK ++ S++ VL W D I
Sbjct: 120 LGSGTGAVGLMAATLG-ADVIVTDLEELQDLLKMNINMNKHLVTGSVQAKVLKWG--DDI 176
Query: 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWE 189
L P D ++ AD +Y EES L++ ++ L + ++ Y+ R+ PE K ++E
Sbjct: 177 EDLMSP-DYILMADCIYYEESLEPLLKTLKDLSGSETSIICCYEQRTMGKNPEIEKKYFE 235
Query: 190 MCAEVFLIEKVPHEDLHPDYGYEETDVYIL 219
+ F EK+P D H D Y D++IL
Sbjct: 236 LLQLDFDFEKIPL-DKH-DEEYRSEDIHIL 263
|
|
| UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 66/210 (31%), Positives = 110/210 (52%)
Query: 14 RDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIE 73
RD + Q S VG VW ++VL+K++E P + + +H L +RR +E
Sbjct: 23 RDGTVLRLQQYSSGGVGCVVWDAAIVLSKYLET----PEFSGDG-AHAL----SRRSVLE 73
Query: 74 LGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133
LG+G GA G+ LG AD+V+TD+ + LK N+ NK ++ S++ VL W ++I
Sbjct: 74 LGSGTGAVGLMAATLG-ADVVVTDLEELQDLLKMNINMNKHLVTGSVQAKVLKWG--EEI 130
Query: 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWE 189
P D ++ AD +Y EES L++ ++ + + ++ Y+ R+ PE K ++E
Sbjct: 131 EGFPSPPDFILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFE 190
Query: 190 MCAEVFLIEKVPHEDLHPDYGYEETDVYIL 219
+ F EK+P E H D Y D++I+
Sbjct: 191 LLQLDFDFEKIPLEK-H-DEEYRSEDIHII 218
|
|
| MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 67/210 (31%), Positives = 111/210 (52%)
Query: 14 RDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIE 73
RD + Q GS VG VW ++VL+K++E P + + +H L +RR +E
Sbjct: 23 RDGTVLRLQQYGSGGVGCVVWDAAIVLSKYLET----PGFSGDG-AHAL----SRRSVLE 73
Query: 74 LGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133
LG+G GA G+ LG AD+++TD+ + LK N+ NK ++ S++ VL W + I
Sbjct: 74 LGSGTGAVGLMAATLG-ADVIVTDLEELQDLLKMNIDMNKHLVTGSVQAKVLKWG--EDI 130
Query: 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWE 189
L P D ++ AD +Y EES L++ ++ L + ++ Y+ R+ PE K ++E
Sbjct: 131 EDLMSP-DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFE 189
Query: 190 MCAEVFLIEKVPHEDLHPDYGYEETDVYIL 219
+ F E++P D H D Y D++I+
Sbjct: 190 LLQLDFDFEEIPL-DKH-DEEYRSEDIHIV 217
|
|
| TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 62/208 (29%), Positives = 97/208 (46%)
Query: 18 LSIQQDNGSMHV----GTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIE 73
LSI Q S++ G+ +W +VL KF+E S +L ++ +E
Sbjct: 103 LSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVD---------SKVLSLEG--KKIVE 151
Query: 74 LGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNK--SLKTSVLYWNNQD 131
LG+GCG G LLG + VLTD+ + LK N++ N N S L W +
Sbjct: 152 LGSGCGLVGCIAALLG-GNAVLTDLPDRLRLLKKNIQTNLHRGNTRGSAIVQELVWGDDP 210
Query: 132 QINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC 191
+ ++P D V+ +DV+Y EE+ LV+ + L +D + L +LR+ + F E
Sbjct: 211 DPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFLSGELRNDAVLEYFLETA 270
Query: 192 AEVFLIEKVPHEDLHPDYGYEETDVYIL 219
+ F I +V HPDY +Y+L
Sbjct: 271 LKDFAIGRVEQTQWHPDYRSHRVVLYVL 298
|
|
| ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 59/199 (29%), Positives = 101/199 (50%)
Query: 29 VGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHS--TRRRAIELGAGCGAAGMAFY 86
VG VW ++VL+K++E T + + S + + IELGAG G G+
Sbjct: 33 VGCVVWDAAIVLSKYLE---------TEQFCSIGSGVSMWSSKNIIELGAGTGLVGLVAA 83
Query: 87 LLGLADIVLTDISPVMPALKHNLKRNKPVLNK-SLKTSVLYWN-NQDQINALKPPFDLVI 144
LG A++ LTD+ + P L+ N+K+N+ +++ S+ VL W N D L P ++
Sbjct: 84 SLG-ANVTLTDLEDLQPLLQLNIKKNQQLIHTGSVTAKVLKWGANVDDF--LPHPH-YIL 139
Query: 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWEMCAEVFLIEKV 200
AD +Y E+S LV ++ L + ++ Y+ R+ PE K F+E+ + F E++
Sbjct: 140 MADCIYYEQSVEPLVETLKLLAGPETCIICCYEQRTVGVNPEIEKRFFELLLQDFQSEEI 199
Query: 201 PHEDLHPDYGYEETDVYIL 219
E P++ D++IL
Sbjct: 200 SSEKQDPEFN--SPDIHIL 216
|
|
| UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 61/206 (29%), Positives = 100/206 (48%)
Query: 7 PVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHS 66
P+ + + I+QD + V VW ++VL+ ++E A ++
Sbjct: 20 PLATFSFANHTIQIRQDWRHLGVAAVVWDAAIVLSTYLEMGA-------------VELRG 66
Query: 67 TRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSV-- 124
R A+ELGAG G G+ LLG A + +TD + LK N++ N P + KT V
Sbjct: 67 --RSAVELGAGTGLVGIVAALLG-AHVTITDRKVALEFLKSNVQANLPP-HIQTKTVVKE 122
Query: 125 LYWNNQDQINALKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEA 183
L W + + P FDL++ AD++Y+EE+ L++ +E L ++ V+LL ++R E
Sbjct: 123 LTWGQN--LGSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRY-ER 179
Query: 184 HKLFWEMCAEVFLIEKV---PHEDLH 206
F M F + KV P +D+H
Sbjct: 180 DNNFLAMLERQFTVRKVHYDPEKDVH 205
|
|
| RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 56/205 (27%), Positives = 99/205 (48%)
Query: 7 PVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHS 66
P+ + + I+QD G + V VW ++VL+ ++E A ++
Sbjct: 20 PLATFSFANHTIQIRQDWGRLGVAAVVWDAAIVLSTYLEMGA-------------VELRG 66
Query: 67 TRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPV-LNKSLKTSVL 125
A+ELGAG G G+ LLG A + +TD + LK N++ N P + + L
Sbjct: 67 CS--AVELGAGTGLVGIVAALLG-AHVTITDRKVALEFLKSNVEANLPPHIQPKVVVKEL 123
Query: 126 YWNNQDQINALKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAH 184
W +++ P FDL++ AD++Y+E++ L++ + L +++ V+LL ++R E
Sbjct: 124 TWGQN--LDSFSPGEFDLILGADIIYLEDTFTDLLQTLGHLCSNNSVILLACRIRY-ERD 180
Query: 185 KLFWEMCAEVFLIEKV---PHEDLH 206
F M F + KV P +D+H
Sbjct: 181 NNFLTMLERQFTVSKVHYDPEKDVH 205
|
|
| ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 57/201 (28%), Positives = 99/201 (49%)
Query: 10 ELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRR 69
E + + + + QD + V VW ++VL F+E +D +
Sbjct: 23 EFTLANHRIRLSQDWKRLGVAAVVWDAAVVLCMFLEMGK-------------VDLKG--K 67
Query: 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPV-LNKSLKTSVLYWN 128
R IELGAG G G+ LLG A++ +TD P + L N+ N P K+++ S L W
Sbjct: 68 RVIELGAGTGLVGIVAALLG-ANVTITDREPALEFLTANVHENIPQGRQKAVQVSELTWG 126
Query: 129 NQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW 188
+ + +DL++ AD+VY+EE+ L++ +E L + D VVLL ++R +
Sbjct: 127 ENLDLYP-QGGYDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCRIRYERDERFLT 185
Query: 189 EMCAEVFLIEKVPHE---DLH 206
E+ + F +++V ++ D+H
Sbjct: 186 EL-RQRFSVQEVHYDSQRDIH 205
|
|
| MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 56/205 (27%), Positives = 96/205 (46%)
Query: 7 PVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHS 66
P+ + + I+QD + V VW ++VL+ ++E A ++
Sbjct: 20 PLATFSFANHTIQIRQDWRQLGVAAVVWDAAVVLSMYLEMGA-------------VELRG 66
Query: 67 TRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPV-LNKSLKTSVL 125
A+ELGAG G G+ LLG A + +TD + LK N++ N P + L
Sbjct: 67 CS--AVELGAGTGLVGIVAALLG-AQVTITDRKVALEFLKSNVEANLPPHIQPKAVVKEL 123
Query: 126 YWNNQDQINALKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAH 184
W + + P FDL++ ADV+Y+E++ L++ + L +++ V+LL ++R E
Sbjct: 124 TWGQN--LESFSPGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRY-ERD 180
Query: 185 KLFWEMCAEVFLIEKV---PHEDLH 206
F M F + KV P +D+H
Sbjct: 181 SNFLTMLERQFTVSKVHYDPEKDVH 205
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8C436 | MT21D_MOUSE | 2, ., 1, ., 1, ., - | 0.3130 | 0.8491 | 0.8640 | yes | no |
| Q9H867 | MT21D_HUMAN | 2, ., 1, ., 1, ., - | 0.3133 | 0.8663 | 0.8777 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 232 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 7e-22 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 4e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 5e-06 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 9e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 8e-05 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 0.004 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 7e-22
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAG 77
L I++D G+ +G VW ++VL+K++E + +ELG+G
Sbjct: 7 LKIEEDTGN-GIGGHVWDAAVVLSKYLEMKITPGGNN-----------LSGLNVLELGSG 54
Query: 78 CGAAGMAFYLLGL-ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL 136
G G+A LL A + +TD+ + +K N++ N L+ + VL W +
Sbjct: 55 TGLVGIAVALLLPGASVTITDLEEAIELMKKNIELNG--LSSKVTAKVLDWGEDLPDDVF 112
Query: 137 KP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEV 194
P P DL++AAD VY E+S L + + L+ + V+L+ Y+ R EA K F+++ E
Sbjct: 113 DPHPVDLILAADCVYNEDSFPLLEKTLNDLLGKETVILVAYKKR-REAEKRFFKLLEEF 170
|
Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%)
Query: 60 HLLDFHST--RRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL 116
++ D T +R ++LGAG G +A G A++V DI P + A++ N N +
Sbjct: 70 YIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN--GV 127
Query: 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176
+ + L + P FDL++A D+ Y A +L+ + L VL+G
Sbjct: 128 SILFTHADLIGSP--------PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGD 179
Query: 177 QLRSP 181
R+
Sbjct: 180 PGRAY 184
|
Length = 218 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-06
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 77 GCGAAGMAFYLLGL---ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133
GCG + LL + DISP L+ +R L + + D I
Sbjct: 4 GCGTGTLLRALLEALPGLEYTGVDISPAA--LEAAAERLAA--LGLLDAVRVRLDVLDAI 59
Query: 134 NALKPPFDLVIAADVV-YIEESAAQLVRAMEALVADDGVV 172
+ FD+V+A++V+ ++ + ++R + L+ GV+
Sbjct: 60 DLDPGSFDVVVASNVLHHLAD-PRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 9e-06
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNN 129
R ++LG G GA +A A + DISPV L+ K +L +++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVA--LELARKAAAALLADNVE-----VLK 53
Query: 130 QDQINALKPP---FDLVIAADVV-YIEESAAQLVRAMEALVADDGVVLLGY 176
D FD++I+ + ++ E A+ + L+ GV++L
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 8e-05
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 73 ELGAGCGAAGMAFYLLGLADIVLTDISPVMPAL-KHNLKRNKPVLNKSLKTSVLYWNNQD 131
+LG G G A G + + DIS L K L+ P + + D
Sbjct: 3 DLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVR---------FVVAD 53
Query: 132 --QINALKPPFDLVIAADVVYI---EESAAQLVRAMEALVADDG 170
+ + FDLVI A + + L+R L+ G
Sbjct: 54 ARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 35.9 bits (83), Expect = 0.004
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 69 RRAIELGAGCGA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYW 127
R ++ GAG GA A A +V ++ P A +R + + + V+
Sbjct: 2 DRVLDPGAGSGAFLLAAARAGPDARVVGVELDPE--AAAL-ARRRLALAGLAPRVRVVVG 58
Query: 128 NNQDQINALKPPFDLVIAADVVYI---------EESAAQLVRAMEALVADDGVVLL 174
+ ++ + FDLV+ + Y + + + A L+ GV+++
Sbjct: 59 DARELLELPDGSFDLVL-GNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 232 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.94 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.79 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.78 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.75 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.74 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.73 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.72 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.7 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.66 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.64 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.64 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.63 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.63 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.62 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.61 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.6 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.57 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.56 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.55 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.55 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.54 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.54 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.53 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.53 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.52 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.52 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.51 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.5 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.49 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.48 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.47 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.47 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.47 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.47 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.46 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.46 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.44 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.44 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.44 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.41 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.4 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.4 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.39 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.38 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.38 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.37 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.37 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.36 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.36 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.36 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.36 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.36 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.35 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.33 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.33 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.33 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.33 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.33 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.33 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.32 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.32 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.32 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.32 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.31 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.3 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.3 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.3 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.3 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.29 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.29 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.28 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.27 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.27 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.27 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.26 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.26 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.26 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.25 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.25 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.25 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.24 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.24 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.23 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.23 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.23 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.23 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.23 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.22 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.22 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.22 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.22 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.21 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.2 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.2 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.2 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.19 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.19 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.18 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.18 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.18 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.17 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.17 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.16 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.16 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.16 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.15 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.15 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.14 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.14 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.13 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.11 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.1 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.09 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.09 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.08 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.08 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.07 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.07 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.06 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.06 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.06 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.05 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.04 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.04 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.03 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.01 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.01 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.0 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.0 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.99 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.98 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.97 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.96 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.96 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 98.95 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.95 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.95 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.94 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.93 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.91 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.91 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.91 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.9 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.89 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.88 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.86 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.83 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.83 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.82 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.8 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.8 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.8 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.79 | |
| PLN02476 | 278 | O-methyltransferase | 98.78 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.77 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.73 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.71 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.71 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.7 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.67 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.66 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.66 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.65 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.63 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.6 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.6 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.59 | |
| PLN02366 | 308 | spermidine synthase | 98.59 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.58 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.56 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.56 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.56 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.55 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.53 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.52 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.52 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.49 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.47 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.47 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.45 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.4 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.39 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.39 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.37 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.37 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.37 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.34 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.33 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.3 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.29 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.28 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.27 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.26 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.26 | |
| PLN02823 | 336 | spermine synthase | 98.22 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.2 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.19 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.19 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.12 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.1 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.1 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.08 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.08 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.05 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.03 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.99 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.97 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.96 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.96 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.92 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.9 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.9 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.9 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.88 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.88 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.87 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.85 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.8 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.79 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.78 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.77 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.76 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.72 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.68 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.64 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.56 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.54 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.53 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.53 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.5 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.38 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.36 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.35 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.34 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.22 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.22 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.22 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.22 | |
| PHA01634 | 156 | hypothetical protein | 97.12 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.12 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.1 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.1 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.99 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.98 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.9 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.87 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.86 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 96.81 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 96.8 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 96.8 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.76 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.69 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.43 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.36 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.32 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.28 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 96.1 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.04 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.97 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.96 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.81 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 95.78 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.66 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.59 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 95.56 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.39 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.35 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.25 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 95.14 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.9 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.89 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.88 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.82 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.81 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.72 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.23 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 94.14 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 94.14 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 93.8 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.65 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.52 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.49 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.17 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.04 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 92.95 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 92.89 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.86 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 92.77 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 92.55 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.45 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 92.43 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.42 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 92.12 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 91.94 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.6 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.55 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 91.54 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.47 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.27 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.21 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 91.12 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 90.72 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.4 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 90.24 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 90.16 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 89.5 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 89.33 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 89.18 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 89.04 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 89.04 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 88.99 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 88.65 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 88.61 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 88.53 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 88.49 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 88.35 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 88.22 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 88.18 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 88.09 | |
| PRK13699 | 227 | putative methylase; Provisional | 87.87 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 87.75 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 87.31 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 86.95 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 86.26 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 85.97 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 85.83 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 85.71 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 85.31 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 85.28 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 85.28 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 84.97 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 84.93 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 84.48 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 84.4 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 83.46 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 83.34 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 83.33 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 83.2 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 83.18 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 83.06 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 82.7 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 82.32 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 82.26 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 81.96 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 81.86 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 81.67 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 81.61 | |
| KOG3350 | 217 | consensus Uncharacterized conserved protein [Funct | 81.58 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 80.74 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 80.5 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 80.4 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 80.29 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=181.43 Aligned_cols=169 Identities=33% Similarity=0.542 Sum_probs=101.7
Q ss_pred cCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCc
Q 026858 14 RDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLAD 92 (232)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~ 92 (232)
++.+++|+++.+ .++|.++|+++..|++|+....... .....+.++ +|||||||+|+.|+.+++. +..+
T Consensus 2 ~~~~l~i~e~~~-~~~G~~vW~aa~~La~~l~~~~~~~-------~~~~~~~~~--~VLELGaG~Gl~gi~~a~~~~~~~ 71 (173)
T PF10294_consen 2 DNKTLQIEEDWG-DGTGGKVWPAALVLARYLLSHSESE-------FNPELFRGK--RVLELGAGTGLPGIAAAKLFGAAR 71 (173)
T ss_dssp ----------------------HHHHHHHHHHH--------------GGGTTTS--EEEETT-TTSHHHHHHHHT-T-SE
T ss_pred cccccccccccc-cCCcEEEechHHHHHHHHHHhcccc-------cchhhcCCc--eEEEECCccchhHHHHHhccCCce
Confidence 456789999988 5999999999999999999853100 000156777 9999999999999999998 5569
Q ss_pred EEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcE
Q 026858 93 IVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGV 171 (232)
Q Consensus 93 v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~ 171 (232)
|+++|.++.+..++.|+..|......++.+..++|+....... ...+||+|+++|++|..+..+.+++.+.++++++|.
T Consensus 72 Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 72 VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 9999999988899999999875456778999999998542222 235799999999999999999999999999999999
Q ss_pred EEEEEeecChhHHHHHHHHHhc
Q 026858 172 VLLGYQLRSPEAHKLFWEMCAE 193 (232)
Q Consensus 172 l~i~~~~r~~~~~~~~~~~~~~ 193 (232)
++++++.|. .....|++.+++
T Consensus 152 vl~~~~~R~-~~~~~F~~~~~k 172 (173)
T PF10294_consen 152 VLLAYKRRR-KSEQEFFDRLKK 172 (173)
T ss_dssp EEEEEE-S--TGGCHHHHHH--
T ss_pred EEEEeCEec-HHHHHHHHHhhh
Confidence 999998886 456778887753
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=144.13 Aligned_cols=162 Identities=23% Similarity=0.358 Sum_probs=122.0
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|-++...++.+.|.-+|| +..|+-.++++....+++.+... +++ +|||+|||||.+++.+++
T Consensus 120 w~~~~~~~~~~~I~idPg-~AFGTG~H~TT~lcl~~l~~~~~---------------~g~--~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 120 WEEYPEPPDEIVIEIDPG-MAFGTGHHPTTRLCLELLEKYVK---------------PGK--RVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp T----SSTTSEEEEESTT-SSS-SSHCHHHHHHHHHHHHHSS---------------TTS--EEEEES-TTSHHHHHHHH
T ss_pred CcccCCCCCcEEEEECCC-CcccCCCCHHHHHHHHHHHHhcc---------------CCC--EEEEeCCcHHHHHHHHHH
Confidence 777877788999999999 77777778999999999998855 778 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.|+++|+++|+++ ++..++.|+..|+ +..++... .... ...++||+|+++= ....+..++..+.+++
T Consensus 182 lGA~~v~a~DiDp~Av~~a~~N~~~N~--~~~~~~v~-----~~~~--~~~~~~dlvvANI---~~~vL~~l~~~~~~~l 249 (295)
T PF06325_consen 182 LGAKKVVAIDIDPLAVEAARENAELNG--VEDRIEVS-----LSED--LVEGKFDLVVANI---LADVLLELAPDIASLL 249 (295)
T ss_dssp TTBSEEEEEESSCHHHHHHHHHHHHTT---TTCEEES-----CTSC--TCCS-EEEEEEES----HHHHHHHHHHCHHHE
T ss_pred cCCCeEEEecCCHHHHHHHHHHHHHcC--CCeeEEEE-----Eecc--cccccCCEEEECC---CHHHHHHHHHHHHHhh
Confidence 9999999999999 5889999999998 33444332 1111 1237899999853 2245667888899999
Q ss_pred CCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 167 ADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 167 ~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
+|||.++++..... ....+.+.++.+|.+....
T Consensus 250 ~~~G~lIlSGIl~~--~~~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 250 KPGGYLILSGILEE--QEDEVIEAYKQGFELVEER 282 (295)
T ss_dssp EEEEEEEEEEEEGG--GHHHHHHHHHTTEEEEEEE
T ss_pred CCCCEEEEccccHH--HHHHHHHHHHCCCEEEEEE
Confidence 99999999887664 2456666666688876654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=140.51 Aligned_cols=164 Identities=23% Similarity=0.316 Sum_probs=128.6
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|.++.-....+.|+-+|| +..|+-.+|.+....+++.+... +++ +|||+|||||.+++.+++
T Consensus 121 w~~~~~~~~~~~i~lDPG-lAFGTG~HpTT~lcL~~Le~~~~---------------~g~--~vlDvGcGSGILaIAa~k 182 (300)
T COG2264 121 WREYPEPSDELNIELDPG-LAFGTGTHPTTSLCLEALEKLLK---------------KGK--TVLDVGCGSGILAIAAAK 182 (300)
T ss_pred CccCCCCCCceEEEEccc-cccCCCCChhHHHHHHHHHHhhc---------------CCC--EEEEecCChhHHHHHHHH
Confidence 777766668999999999 67777778999999999998754 778 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEcccCCCcccHHHHHHHHHHh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAADVVYIEESAAQLVRAMEAL 165 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~ 165 (232)
.|+.+++++|+++ +++.++.|+..|+... .+.....+. . ... .++||+|+++= + ...+..+...+.++
T Consensus 183 LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~--~~~~~~~~~---~--~~~~~~~~DvIVANI-L--A~vl~~La~~~~~~ 252 (300)
T COG2264 183 LGAKKVVGVDIDPQAVEAARENARLNGVEL--LVQAKGFLL---L--EVPENGPFDVIVANI-L--AEVLVELAPDIKRL 252 (300)
T ss_pred cCCceEEEecCCHHHHHHHHHHHHHcCCch--hhhcccccc---h--hhcccCcccEEEehh-h--HHHHHHHHHHHHHH
Confidence 9998999999999 6999999999998432 111122111 1 112 25899999853 2 24667888999999
Q ss_pred hCCCcEEEEEEeecChhHHHHHHHHH-hcCceEEEec
Q 026858 166 VADDGVVLLGYQLRSPEAHKLFWEMC-AEVFLIEKVP 201 (232)
Q Consensus 166 l~pgG~l~i~~~~r~~~~~~~~~~~~-~~~f~~~~~~ 201 (232)
++|||+++++...... .+.+.+.+ +.+|.+.+..
T Consensus 253 lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 253 LKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred cCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEE
Confidence 9999999999866652 56667766 4599887765
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=123.50 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCC-cEEE
Q 026858 17 LLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLA-DIVL 95 (232)
Q Consensus 17 ~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~-~v~~ 95 (232)
++++++.+|.++.+.. =.++..|++++..... + +|||+|||+|.+++.+++.+.. ++++
T Consensus 1 ~~~~~~~~gvFs~~~~-d~~t~lL~~~l~~~~~-----------------~--~vLDlG~G~G~i~~~la~~~~~~~v~~ 60 (170)
T PF05175_consen 1 ELEFITHPGVFSPPRL-DAGTRLLLDNLPKHKG-----------------G--RVLDLGCGSGVISLALAKRGPDAKVTA 60 (170)
T ss_dssp EEEEEEETTSTTTTSH-HHHHHHHHHHHHHHTT-----------------C--EEEEETSTTSHHHHHHHHTSTCEEEEE
T ss_pred CEEEEECCCeeCCCCC-CHHHHHHHHHHhhccC-----------------C--eEEEecCChHHHHHHHHHhCCCCEEEE
Confidence 4789999998875544 3457788888877533 5 8999999999999999988553 6999
Q ss_pred Ecchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-----cHHHHHHHHHHhhCCC
Q 026858 96 TDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-----SAAQLVRAMEALVADD 169 (232)
Q Consensus 96 ~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~pg 169 (232)
+|+++ ++..++.|+..|... . +.+...|+-... ..++||+|+++++++... ....+++...+.|+||
T Consensus 61 vDi~~~a~~~a~~n~~~n~~~--~-v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 61 VDINPDALELAKRNAERNGLE--N-VEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp EESBHHHHHHHHHHHHHTTCT--T-EEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred EcCCHHHHHHHHHHHHhcCcc--c-cccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 99999 688889999988732 2 677776664433 246899999999987544 3788999999999999
Q ss_pred cEEEEEEeec
Q 026858 170 GVVLLGYQLR 179 (232)
Q Consensus 170 G~l~i~~~~r 179 (232)
|.++++....
T Consensus 134 G~l~lv~~~~ 143 (170)
T PF05175_consen 134 GRLFLVINSH 143 (170)
T ss_dssp EEEEEEEETT
T ss_pred CEEEEEeecC
Confidence 9998877544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=137.27 Aligned_cols=178 Identities=12% Similarity=0.117 Sum_probs=123.9
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+++++.|..++|...+|.++.+.-. .++..|.+++... ... +|||||||+|.+++.+++
T Consensus 189 ~~~~~~~~~~~~~~~~~gVFs~~~LD-~GtrllL~~lp~~-----------------~~~--~VLDLGCGtGvi~i~la~ 248 (378)
T PRK15001 189 TVSWKLEGTDWTIHNHANVFSRTGLD-IGARFFMQHLPEN-----------------LEG--EIVDLGCGNGVIGLTLLD 248 (378)
T ss_pred eeEEEEcCceEEEEecCCccCCCCcC-hHHHHHHHhCCcc-----------------cCC--eEEEEeccccHHHHHHHH
Confidence 67889999999999999999976544 5566666665322 235 899999999999999987
Q ss_pred h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-----ccHHHHHH
Q 026858 88 L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-----ESAAQLVR 160 (232)
Q Consensus 88 ~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~ 160 (232)
. +..+|+++|.|+ ++..++.|.+.|......++.+...|..... ..++||+|+++++++.. .....++.
T Consensus 249 ~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~ 324 (378)
T PRK15001 249 KNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFH 324 (378)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC----CCCCEEEEEECcCcccCccCCHHHHHHHHH
Confidence 7 334999999998 5778888888775321123455444432211 13479999999888643 24567889
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc-eEEEecCCCCCCCCCCCceEEEEEEec
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF-LIEKVPHEDLHPDYGYEETDVYILRKK 222 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (232)
.+.++|+|||.++++. +|+.. +...+++.| .++.+. ..+++.|+...+.
T Consensus 325 ~a~~~LkpGG~L~iV~-nr~l~----y~~~L~~~fg~~~~va--------~~~kf~vl~a~k~ 374 (378)
T PRK15001 325 HARRCLKINGELYIVA-NRHLD----YFHKLKKIFGNCTTIA--------TNNKFVVLKAVKL 374 (378)
T ss_pred HHHHhcccCCEEEEEE-ecCcC----HHHHHHHHcCCceEEc--------cCCCEEEEEEEeC
Confidence 9999999999999996 44422 223333333 344443 4667777776653
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=131.19 Aligned_cols=173 Identities=15% Similarity=0.170 Sum_probs=122.6
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
+....+.+..+++...||+++.+.-.-.+ .+|.+.+.. ..+. +|||+|||.|.+|+.+++
T Consensus 119 ~~~~~~~~~~~~~~t~pGVFS~~~lD~GS-~lLl~~l~~-----------------~~~~--~vlDlGCG~Gvlg~~la~ 178 (300)
T COG2813 119 EWKVYLLGHELTFKTLPGVFSRDKLDKGS-RLLLETLPP-----------------DLGG--KVLDLGCGYGVLGLVLAK 178 (300)
T ss_pred hhhhhhccCceEEEeCCCCCcCCCcChHH-HHHHHhCCc-----------------cCCC--cEEEeCCCccHHHHHHHH
Confidence 44444559999999999999998877664 444444332 2345 899999999999999998
Q ss_pred h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc-HH----HHHH
Q 026858 88 L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES-AA----QLVR 160 (232)
Q Consensus 88 ~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-~~----~~l~ 160 (232)
. +..+++++|.|. +++.++.|+..|..... .+..-+. .+...++||.||++++++.... .. .++.
T Consensus 179 ~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~---~v~~s~~-----~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~ 250 (300)
T COG2813 179 KSPQAKLTLVDVNARAVESARKNLAANGVENT---EVWASNL-----YEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIA 250 (300)
T ss_pred hCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc---EEEEecc-----cccccccccEEEeCCCccCCcchhHHHHHHHHH
Confidence 7 445999999998 68999999999874421 1222211 1112348999999999984433 33 6889
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc-eEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF-LIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
...+.|++||.++++.. +... +...+++-| +++.+. ....+.|+..++
T Consensus 251 ~A~~~L~~gGeL~iVan-~~l~----y~~~L~~~Fg~v~~la--------~~~gf~Vl~a~k 299 (300)
T COG2813 251 AAARHLKPGGELWIVAN-RHLP----YEKKLKELFGNVEVLA--------KNGGFKVLRAKK 299 (300)
T ss_pred HHHHhhccCCEEEEEEc-CCCC----hHHHHHHhcCCEEEEE--------eCCCEEEEEEec
Confidence 99999999999999986 4422 444455555 367765 456666666544
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-16 Score=125.43 Aligned_cols=164 Identities=21% Similarity=0.235 Sum_probs=128.8
Q ss_pred EEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh
Q 026858 9 IELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL 88 (232)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~ 88 (232)
++...-++.+.|.|.++.+..|.- +.+|+.|.... ... +|||||||+|.+++.+|+.
T Consensus 9 ~~~~~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~~-----------------~~~--~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 9 IDNLFTFKQFFIIQDRCGFRYGTD----AILLAAFAPVP-----------------KKG--RILDLGAGNGALGLLLAQR 65 (248)
T ss_pred hcccccccceEEEeCCCccccccH----HHHHHhhcccc-----------------cCC--eEEEecCCcCHHHHHHhcc
Confidence 444446788999999987777765 89999998643 245 9999999999999999987
Q ss_pred -CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-------------
Q 026858 89 -GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE------------- 153 (232)
Q Consensus 89 -~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~------------- 153 (232)
...+++++|+++ +...+++|.+.|. +..++++...|+.+...... ..+||+|+|++++|...
T Consensus 66 ~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~-~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar 142 (248)
T COG4123 66 TEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALV-FASFDLIICNPPYFKQGSRLNENPLRAIAR 142 (248)
T ss_pred CCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhccc-ccccCEEEeCCCCCCCccccCcChhhhhhh
Confidence 434999999999 5678888998877 67788999998877654222 23699999999987332
Q ss_pred -----cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEec
Q 026858 154 -----SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 154 -----~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
+++.+++...++||+||.+.++... +....+.+.+.. +|...++.
T Consensus 143 ~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 143 HEITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred hhhcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEEE
Confidence 5899999999999999999999742 445667777776 78776664
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=125.26 Aligned_cols=159 Identities=23% Similarity=0.312 Sum_probs=122.9
Q ss_pred CCCccc-eeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchh-H
Q 026858 26 SMHVGT-SVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISP-V 101 (232)
Q Consensus 26 ~~~~g~-~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~-~ 101 (232)
..+||. ++||++.+|+.++.+... ++.+. +|||+|.|- |+.++.+|.. ....|..+|.++ .
T Consensus 2 fdntgnvciwpseeala~~~l~~~n-------------~~rg~--~ilelgggft~laglmia~~a~~~~v~ltdgne~s 66 (201)
T KOG3201|consen 2 FDNTGNVCIWPSEEALAWTILRDPN-------------KIRGR--RILELGGGFTGLAGLMIACKAPDSSVWLTDGNEES 66 (201)
T ss_pred cCCCCcEEecccHHHHHHHHHhchh-------------HHhHH--HHHHhcCchhhhhhhheeeecCCceEEEecCCHHH
Confidence 456777 799999999999998877 78889 999999995 8889988876 445999999998 5
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 102 MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 102 ~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++.++-+-.|....-. ....+.|...... ......||+|+++|+++..+..+.++++++.+|+|.|+.++..+.|.
T Consensus 67 vrnv~ki~~~n~~s~~t--sc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 67 VRNVEKIRNSNMASSLT--SCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred HHHHHHHHhcccccccc--eehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 77777766555321112 2223443332221 12234799999999999999999999999999999999998888776
Q ss_pred hhHHHHHHHHHhc-CceEEEecC
Q 026858 181 PEAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 181 ~~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
.+.++|.+.... +|.+..-++
T Consensus 145 -~sL~kF~de~~~~gf~v~l~en 166 (201)
T KOG3201|consen 145 -QSLQKFLDEVGTVGFTVCLEEN 166 (201)
T ss_pred -chHHHHHHHHHhceeEEEeccc
Confidence 778999999886 887765544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=130.23 Aligned_cols=164 Identities=21% Similarity=0.375 Sum_probs=118.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|-++......+.|.-+|| +..|+-.++.+....+++..... +++ +|||+|||+|.+++.+++
T Consensus 118 w~~~~~~~~~~~i~ldpg-~aFgtG~h~tt~l~l~~l~~~~~---------------~g~--~VLDvGcGsG~lai~aa~ 179 (288)
T TIGR00406 118 WRDVPSDEDALIIMLDPG-LAFGTGTHPTTSLCLEWLEDLDL---------------KDK--NVIDVGCGSGILSIAALK 179 (288)
T ss_pred CcCCCCCCCcEEEEECCC-CcccCCCCHHHHHHHHHHHhhcC---------------CCC--EEEEeCCChhHHHHHHHH
Confidence 555555567788999998 55555566888888888876533 567 999999999999999988
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.++.+++++|+++ ++..+++|...|. +...+.....+. . ....++||+|+++.. ...+..++..+.++|
T Consensus 180 ~g~~~V~avDid~~al~~a~~n~~~n~--~~~~~~~~~~~~---~--~~~~~~fDlVvan~~---~~~l~~ll~~~~~~L 249 (288)
T TIGR00406 180 LGAAKVVGIDIDPLAVESARKNAELNQ--VSDRLQVKLIYL---E--QPIEGKADVIVANIL---AEVIKELYPQFSRLV 249 (288)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeccc---c--cccCCCceEEEEecC---HHHHHHHHHHHHHHc
Confidence 8877999999998 5778888888776 323333333221 1 112458999998643 235567899999999
Q ss_pred CCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 167 ADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 167 ~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
+|||.++++..... ....+.+.+...|.+....
T Consensus 250 kpgG~li~sgi~~~--~~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 250 KPGGWLILSGILET--QAQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred CCCcEEEEEeCcHh--HHHHHHHHHHccCceeeEe
Confidence 99999999876543 3455666666557665543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.2e-16 Score=123.91 Aligned_cols=109 Identities=18% Similarity=0.240 Sum_probs=86.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+++ +|||+|||-|+++..+|+.|+ +|+++|+++ .+..++....+++.. +.+...... ++....++||+
T Consensus 58 l~g~--~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~----i~y~~~~~e---dl~~~~~~FDv 127 (243)
T COG2227 58 LPGL--RVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN----IDYRQATVE---DLASAGGQFDV 127 (243)
T ss_pred CCCC--eEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc----ccchhhhHH---HHHhcCCCccE
Confidence 5778 999999999999999999998 999999998 466666655655522 222222221 11122268999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
|+|..++.+.++...+++++.+++||||.+++++.+|+..
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 9999999999999999999999999999999999999853
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=119.17 Aligned_cols=157 Identities=20% Similarity=0.276 Sum_probs=112.1
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
|-++.- .....|.-+|+ +..|+-.++.+..+.+++..... +++ +|||+|||+|.+++.+++
T Consensus 79 ~~~~~~-~~~~~i~i~p~-~afgtg~h~tt~~~l~~l~~~~~---------------~~~--~VLDiGcGsG~l~i~~~~ 139 (250)
T PRK00517 79 WEDPPD-PDEINIELDPG-MAFGTGTHPTTRLCLEALEKLVL---------------PGK--TVLDVGCGSGILAIAAAK 139 (250)
T ss_pred CcCCCC-CCeEEEEECCC-CccCCCCCHHHHHHHHHHHhhcC---------------CCC--EEEEeCCcHHHHHHHHHH
Confidence 444433 56677888887 55555568989998888876543 567 999999999999998888
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.++.+++++|+|+ ++..+++|...+.. ...+.+.. .+.+||+|+++-. ...+..++..+.++|
T Consensus 140 ~g~~~v~giDis~~~l~~A~~n~~~~~~--~~~~~~~~-----------~~~~fD~Vvani~---~~~~~~l~~~~~~~L 203 (250)
T PRK00517 140 LGAKKVLAVDIDPQAVEAARENAELNGV--ELNVYLPQ-----------GDLKADVIVANIL---ANPLLELAPDLARLL 203 (250)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHcCC--CceEEEcc-----------CCCCcCEEEEcCc---HHHHHHHHHHHHHhc
Confidence 8876799999999 57788888887752 12221111 1127999998632 244677889999999
Q ss_pred CCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 167 ADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 167 ~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
+|||.++++..... ....+.+.+. .+|.+....
T Consensus 204 kpgG~lilsgi~~~--~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 204 KPGGRLILSGILEE--QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred CCCcEEEEEECcHh--hHHHHHHHHHHCCCEEEEEE
Confidence 99999999865443 2445556555 478877654
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-15 Score=118.86 Aligned_cols=171 Identities=31% Similarity=0.488 Sum_probs=127.9
Q ss_pred CCCccceeechHHHHHHHHhhhCCCCCCCCCCCCccc-ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHH
Q 026858 26 SMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLL-DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPA 104 (232)
Q Consensus 26 ~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~ 104 (232)
.-+.+..+|+++..++.++..+... +|+.+.. .+..++.+|||||+|+|+.|+.+|.....+|+.+|....+..
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~-----~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~ 123 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRD-----SELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN 123 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcC-----chhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH
Confidence 4677889999999999998866541 2333321 233233389999999999999999864449999999987777
Q ss_pred HHHHHHhcCCCC---CCceEEEEeecCCCcccccCCCC-ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 105 LKHNLKRNKPVL---NKSLKTSVLYWNNQDQINALKPP-FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 105 ~~~n~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
...|...|...+ ..++....++|+.........+. +|+|++++++|..+..+.++..++.+|..++++++.++.|+
T Consensus 124 L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 124 LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 777766665333 34899999999998876555555 99999999999999999999999999999999999999888
Q ss_pred hhHHHHHHHHHhc---CceEEEec
Q 026858 181 PEAHKLFWEMCAE---VFLIEKVP 201 (232)
Q Consensus 181 ~~~~~~~~~~~~~---~f~~~~~~ 201 (232)
....+.+.-.+.. .|.+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~ 227 (248)
T KOG2793|consen 204 DAAWEIEVLLFKKDLKIFDVVQES 227 (248)
T ss_pred chHHHHHHHHhhhhhccceeeeEe
Confidence 5333333333333 44544443
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-14 Score=122.76 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=114.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
+.+|++. .+++...+|.++.+.. =.++..|...+... ... +|||||||+|.++..+++
T Consensus 159 ~~~y~~~--~l~i~~~pgvFs~~~l-D~gt~lLl~~l~~~-----------------~~g--~VLDlGCG~G~ls~~la~ 216 (342)
T PRK09489 159 WKEYQVD--GLTVKTLPGVFSRDGL-DVGSQLLLSTLTPH-----------------TKG--KVLDVGCGAGVLSAVLAR 216 (342)
T ss_pred ceeeecC--CEEEEeCCCCCCCCCC-CHHHHHHHHhcccc-----------------CCC--eEEEeccCcCHHHHHHHH
Confidence 5577764 4788899997765443 34455555555322 235 899999999999999987
Q ss_pred h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCC-----cccHHHHHH
Q 026858 88 L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYI-----EESAAQLVR 160 (232)
Q Consensus 88 ~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~ 160 (232)
. +..+++++|+|+ ++..++.|...|... . .+...|... ...++||+|+++++++. ......+++
T Consensus 217 ~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~--~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~ 287 (342)
T PRK09489 217 HSPKIRLTLSDVSAAALESSRATLAANGLE--G--EVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIR 287 (342)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHHcCCC--C--EEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHH
Confidence 6 334899999998 577888888877622 1 333333221 12468999999988874 235688999
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc-eEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF-LIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
.+.++|+|||.++++....- . .+. .+.+.| .++.+. ...++.+|...+.+
T Consensus 288 ~a~~~LkpgG~L~iVan~~l-~-y~~---~l~~~Fg~~~~la--------~~~~f~v~~a~~~~ 338 (342)
T PRK09489 288 GAVRHLNSGGELRIVANAFL-P-YPD---LLDETFGSHEVLA--------QTGRFKVYRAIMTR 338 (342)
T ss_pred HHHHhcCcCCEEEEEEeCCC-C-hHH---HHHHHcCCeEEEE--------eCCCEEEEEEEccC
Confidence 99999999999999875332 1 222 222223 344443 35556777665543
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-16 Score=124.92 Aligned_cols=105 Identities=20% Similarity=0.319 Sum_probs=81.8
Q ss_pred CCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCC----ceEEEEeecCCCcccccCCCCc
Q 026858 66 STRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNK----SLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~----~i~~~~~d~~~~~~~~~~~~~f 140 (232)
|+ +|||+|||+|+++..+|+.|+ .|+|+|.++. ++.++.. +...+.... ++.+...+.+ +..+.|
T Consensus 90 g~--~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E------~~~~~f 159 (282)
T KOG1270|consen 90 GM--KILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVE------GLTGKF 159 (282)
T ss_pred Cc--eEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchh------hccccc
Confidence 46 899999999999999999998 9999999984 4444444 333333333 2333333322 233569
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|.|+|+.++.+..+...++..+.++|+|+|++++++.+|.
T Consensus 160 DaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 160 DAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999999999999999999999999999999999987775
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-15 Score=107.73 Aligned_cols=104 Identities=21% Similarity=0.336 Sum_probs=79.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHH--hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYL--LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~--~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
|+. +|||||||+|..++.+++ .++ +++++|+|+ ++..++++..... ...++.+...|+ ... ....+.||
T Consensus 1 p~~--~vLDlGcG~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~-~~~--~~~~~~~D 72 (112)
T PF12847_consen 1 PGG--RVLDLGCGTGRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDA-EFD--PDFLEPFD 72 (112)
T ss_dssp TTC--EEEEETTTTSHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCC-HGG--TTTSSCEE
T ss_pred CCC--EEEEEcCcCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECcc-ccC--cccCCCCC
Confidence 346 999999999999999998 466 999999999 5677777774443 456788888887 111 11245799
Q ss_pred EEEEcc-cCC---CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAAD-VVY---IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~-~~~---~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++.. ... ..+....+++.+.+.|+|||++++.+
T Consensus 73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999988 332 12567888999999999999999875
|
... |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-14 Score=109.60 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=92.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||+|||+|..+..++..+. +++++|+++ ++..+++|...+.. .+.+...|+.... .++||+|
T Consensus 19 ~~~--~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~-----~~~fD~V 86 (179)
T TIGR00537 19 KPD--DVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV----GLDVVMTDLFKGV-----RGKFDVI 86 (179)
T ss_pred CCC--eEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC----ceEEEEccccccc-----CCcccEE
Confidence 446 899999999999999998877 999999999 46677777776542 2456666553322 3589999
Q ss_pred EEcccCCCccc---------------------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 144 IAADVVYIEES---------------------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~~~~---------------------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
+++.+++.... ...+++.+.++|+|||.+++...... . ...+.+.++ .+|.++.+.
T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-~-~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-G-EPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-C-hHHHHHHHHhCCCeEEEEE
Confidence 99887753321 46788999999999999999875443 1 334555555 489998887
Q ss_pred CCC
Q 026858 202 HED 204 (232)
Q Consensus 202 ~~~ 204 (232)
...
T Consensus 165 ~~~ 167 (179)
T TIGR00537 165 ERG 167 (179)
T ss_pred Eee
Confidence 654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.9e-14 Score=109.59 Aligned_cols=139 Identities=19% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+. +|||+|||+|..++.+++. +..+|+++|.++ ++..++++...+. +. .+.+...+..... . .++||+|
T Consensus 46 g~--~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--l~-~i~~~~~d~~~~~---~-~~~fDlV 116 (187)
T PRK00107 46 GE--RVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--LK-NVTVVHGRAEEFG---Q-EEKFDVV 116 (187)
T ss_pred CC--eEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--CC-CEEEEeccHhhCC---C-CCCccEE
Confidence 56 9999999999999988864 334999999998 5667777777765 22 2777777765432 2 4589999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRKK 222 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (232)
++.. ...++.+++.+.++|+|||++++...... ...+.+..+ .|+.+..+-...++.. +...|+.+++++
T Consensus 117 ~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 187 (187)
T PRK00107 117 TSRA----VASLSDLVELCLPLLKPGGRFLALKGRDP---EEEIAELPKALGGKVEEVIELTLPGL--DGERHLVIIRKK 187 (187)
T ss_pred EEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---HHHHHHHHHhcCceEeeeEEEecCCC--CCcEEEEEEecC
Confidence 9864 25678899999999999999998864332 233444433 3777666544444433 555677776653
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=115.68 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=85.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||||-.++.+++. |..+|+++|+|+. +...++...... ... +.+...|.. .++..+.+||+
T Consensus 51 ~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~--~~~-i~fv~~dAe---~LPf~D~sFD~ 122 (238)
T COG2226 51 PGD--KVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG--VQN-VEFVVGDAE---NLPFPDNSFDA 122 (238)
T ss_pred CCC--EEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC--ccc-eEEEEechh---hCCCCCCccCE
Confidence 567 9999999999999999887 5559999999994 555555444322 212 566666554 44456789999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|.++..+.+..+++.++++++|+|||||++++......
T Consensus 123 vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 123 VTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 99999999999999999999999999999999876553
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-13 Score=106.05 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=84.9
Q ss_pred cEEEeCccccHHHHHHHH-h-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYL-L-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~-~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||+|||+|..+..++. . ...+++++|+|+ ++..++..++.+. .. ++.+...|+.+.... ..+.||+|++.
T Consensus 6 ~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--~~-ni~~~~~d~~~l~~~--~~~~~D~I~~~ 80 (152)
T PF13847_consen 6 KILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--LD-NIEFIQGDIEDLPQE--LEEKFDIIISN 80 (152)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--ST-TEEEEESBTTCGCGC--SSTTEEEEEEE
T ss_pred EEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--cc-ccceEEeehhccccc--cCCCeeEEEEc
Confidence 999999999999999994 3 234999999999 5666777666554 22 589999988773321 12689999999
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.++++..+...+++.+.++|+++|.+++......
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~ 114 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHN 114 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHS
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECChH
Confidence 9999889999999999999999999999887643
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=121.94 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=83.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|.++..+++.++ +|+++|.++ ++..++.+...+. ....+.+...+..+. ....++||+|
T Consensus 131 ~g~--~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l---~~~~~~FD~V 202 (322)
T PLN02396 131 EGL--KFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKL---ADEGRKFDAV 202 (322)
T ss_pred CCC--EEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHh---hhccCCCCEE
Confidence 556 899999999999999998887 999999998 4555555443332 223456666554322 2234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++.+++++..+...+++.+.++|+|||.+++.+.++.
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 9999999999999999999999999999999875553
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=110.56 Aligned_cols=100 Identities=21% Similarity=0.357 Sum_probs=75.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.+. +|+++|+|+ ++..++++...++ + .+.....+..... ..++||+|
T Consensus 30 ~~~--~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~--~--~v~~~~~d~~~~~----~~~~fD~I 98 (195)
T TIGR00477 30 APC--KTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKAREN--L--PLRTDAYDINAAA----LNEDYDFI 98 (195)
T ss_pred CCC--cEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhC--C--CceeEeccchhcc----ccCCCCEE
Confidence 446 899999999999999999887 999999998 4666666555443 2 1344444443221 23579999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+++.++++. .....+++.+.++|+|||++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 998888643 56789999999999999996665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=118.49 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=83.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||||||+|.++..+++. ++ +|+++|+|+. +..++.+...++ ...++.+...|..+.. ..+++||
T Consensus 117 ~~~~--~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~---~~~~~FD 188 (340)
T PLN02244 117 KRPK--RIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQP---FEDGQFD 188 (340)
T ss_pred CCCC--eEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCC---CCCCCcc
Confidence 3556 8999999999999999876 66 9999999994 555555555544 3345677777765432 2356899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++..++++..+...+++++.++|+|||++++.+
T Consensus 189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 189 LVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999888899999999999999999999875
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=99.31 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=70.7
Q ss_pred EEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCC
Q 026858 72 IELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY 150 (232)
Q Consensus 72 LElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~ 150 (232)
||+|||+|..+..+++.+..+++++|+++. +..+++..... .+.+...+.... +..+++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~------~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE------GVSFRQGDAEDL---PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS------TEEEEESBTTSS---SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc------CchheeehHHhC---cccccccccccccccee
Confidence 899999999999999884449999999994 44444433222 234555555444 34567899999999999
Q ss_pred CcccHHHHHHHHHHhhCCCcEEEE
Q 026858 151 IEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 151 ~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
+.++...+++++.|+|||||++++
T Consensus 72 ~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccCHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-13 Score=105.82 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=87.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|.+++.++..+ ..+|+++|.++ ++..++++...++ + .++.+...|+.... ..++||+
T Consensus 42 ~~~--~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~--~-~~i~~i~~d~~~~~----~~~~fD~ 112 (181)
T TIGR00138 42 DGK--KVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG--L-NNVEIVNGRAEDFQ----HEEQFDV 112 (181)
T ss_pred CCC--eEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC--C-CCeEEEecchhhcc----ccCCccE
Confidence 467 99999999999999888663 34899999998 4556666666654 2 23777777765432 2468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHE 203 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~ 203 (232)
|++.. ....+.+++.+.++|+|||.+++..............+.+. .+++..+.+.-
T Consensus 113 I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 170 (181)
T TIGR00138 113 ITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPL 170 (181)
T ss_pred EEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecccc
Confidence 99864 24567788999999999999998754333222223333333 37776666543
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-13 Score=107.81 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=104.4
Q ss_pred EEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEc
Q 026858 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTD 97 (232)
Q Consensus 18 ~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D 97 (232)
+.+...+|.+.... .+..+.+++.... ..++. +|||+|||+|.+++.+++.++.+++++|
T Consensus 7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~~--------------~~~~~--~vLDlGcG~G~~~~~la~~~~~~v~~vD 66 (223)
T PRK14967 7 DALLRAPGVYRPQE----DTQLLADALAAEG--------------LGPGR--RVLDLCTGSGALAVAAAAAGAGSVTAVD 66 (223)
T ss_pred ceeecCCCCcCCCC----cHHHHHHHHHhcc--------------cCCCC--eEEEecCCHHHHHHHHHHcCCCeEEEEE
Confidence 45566666444333 4567777776432 23556 9999999999999999887766999999
Q ss_pred chh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc---------------------cH
Q 026858 98 ISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE---------------------SA 155 (232)
Q Consensus 98 ~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------~~ 155 (232)
+++ ++..++.|...++. .+.+...|+.... ..++||+|+++.++.... .+
T Consensus 67 ~s~~~l~~a~~n~~~~~~----~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (223)
T PRK14967 67 ISRRAVRSARLNALLAGV----DVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVL 138 (223)
T ss_pred CCHHHHHHHHHHHHHhCC----eeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHH
Confidence 998 56777777776542 2455555554321 235799999987654221 14
Q ss_pred HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecC
Q 026858 156 AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 156 ~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
..+++.+.++|++||++++...... . ...+++.+. .+|.++....
T Consensus 139 ~~~l~~a~~~Lk~gG~l~~~~~~~~-~-~~~~~~~l~~~g~~~~~~~~ 184 (223)
T PRK14967 139 DRLCDAAPALLAPGGSLLLVQSELS-G-VERTLTRLSEAGLDAEVVAS 184 (223)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeccc-C-HHHHHHHHHHCCCCeEEEEe
Confidence 6678889999999999998765543 1 234555554 4777666544
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.2e-14 Score=115.26 Aligned_cols=106 Identities=17% Similarity=0.308 Sum_probs=83.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||+|||+|..+..++..+. +|+++|+|+ ++..++++....+ +..++.+...+..+... ...++||+|++..+
T Consensus 47 ~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~v 121 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQ--HLETPVDLILFHAV 121 (255)
T ss_pred EEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhh--hcCCCCCEEEehhH
Confidence 899999999999999999887 999999998 5666666665543 33445666665543221 12468999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++..+...+++.+.++|+|||.+++...+.+
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 98888889999999999999999998765543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=109.24 Aligned_cols=101 Identities=21% Similarity=0.369 Sum_probs=77.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +|+++|+|+ ++..++++...+. + ..+.+...|+.... ..+.||+|
T Consensus 30 ~~~--~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~--~-~~v~~~~~d~~~~~----~~~~fD~I 99 (197)
T PRK11207 30 KPG--KTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAEN--L-DNLHTAVVDLNNLT----FDGEYDFI 99 (197)
T ss_pred CCC--cEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcC--C-CcceEEecChhhCC----cCCCcCEE
Confidence 456 999999999999999999887 999999998 4666666655543 2 22556666654332 23579999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+++.++++. .....+++.+.++|+|||.+++.
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999888643 46889999999999999996654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=109.60 Aligned_cols=132 Identities=26% Similarity=0.380 Sum_probs=110.1
Q ss_pred CCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHH
Q 026858 26 SMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPA 104 (232)
Q Consensus 26 ~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~ 104 (232)
....|...|.+++.|++|+..+++ ...++ +|||+|+|+|+.++..++.|+..++.+|+++ .+.+
T Consensus 53 pPpfwa~~WagG~~lAR~i~~~Pe-------------tVrgk--rVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~a 117 (218)
T COG3897 53 PPPFWAFAWAGGQVLARYIDDHPE-------------TVRGK--RVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQA 117 (218)
T ss_pred CchHHHHHHhhhHHHHHHHhcCcc-------------ccccc--eeeecccccChHHHHHHHhhhHHHHhcCCChHHHHH
Confidence 345888999999999999999998 88999 9999999999999999999999999999998 3666
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
+..|...|+.. +.+...|... .+..||+|++++++|.......++.+..++...|-.+++.++.|.+.
T Consensus 118 i~lNa~angv~----i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 118 IRLNAAANGVS----ILFTHADLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred hhcchhhccce----eEEeeccccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 67777766532 3555544332 24679999999999999999999998888888888888888888754
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=112.78 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=76.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||||.++..+++. + ..+|+++|+|+ ++..+++...... . .++.+...|..+.+ ..+++||
T Consensus 47 ~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~--~-~~i~~v~~da~~lp---~~d~sfD 118 (233)
T PF01209_consen 47 PGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG--L-QNIEFVQGDAEDLP---FPDNSFD 118 (233)
T ss_dssp S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB-----S-TT-EE
T ss_pred CCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC--C-CCeeEEEcCHHHhc---CCCCcee
Confidence 566 9999999999999998875 2 34999999999 4556666555443 1 25677777665433 3467899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.|+++..+.+..+...++++++|+|||||++++.+..+.
T Consensus 119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 999999999888999999999999999999999876654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=111.81 Aligned_cols=110 Identities=11% Similarity=0.004 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||||..+..+++. + ..+|+++|+|+. +..++++..........++.+...|....+ ..+++||
T Consensus 73 ~~~--~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD 147 (261)
T PLN02233 73 MGD--RVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---FDDCYFD 147 (261)
T ss_pred CCC--EEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---CCCCCEe
Confidence 556 9999999999999888875 3 248999999994 555544332111112234677777654432 3456899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.|+++.++++..+...+++++.++|+|||++++.+...
T Consensus 148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 99999999988899999999999999999999986543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=102.54 Aligned_cols=157 Identities=21% Similarity=0.194 Sum_probs=104.8
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
-++.+..+.+++.. .+++ +|||+|||+|..+..++..+. +++++|.++ ++..+++++..
T Consensus 8 p~~~~~~l~~~~~~-----------------~~~~--~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~~ 67 (188)
T PRK14968 8 PAEDSFLLAENAVD-----------------KKGD--RVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAKCNAKL 67 (188)
T ss_pred cchhHHHHHHhhhc-----------------cCCC--EEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHHHHHHH
Confidence 35666777776653 2456 899999999999999988875 999999998 56777777766
Q ss_pred cCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc---------------------ccHHHHHHHHHHhhCCCc
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE---------------------ESAAQLVRAMEALVADDG 170 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~---------------------~~~~~~l~~l~~~l~pgG 170 (232)
+... ...+.+...|+.... ....||+|+++.+++.. ..+..+++.+.++|+|||
T Consensus 68 ~~~~-~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG 142 (188)
T PRK14968 68 NNIR-NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142 (188)
T ss_pred cCCC-CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCe
Confidence 5421 111566666654322 22379999997766431 125668999999999999
Q ss_pred EEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCCCCceEEEEEE
Q 026858 171 VVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYEETDVYILR 220 (232)
Q Consensus 171 ~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~ 220 (232)
.+++...... ..+.+.+.+.+ +|.+..+... .+..+.+.+...+
T Consensus 143 ~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~ 187 (188)
T PRK14968 143 RILLLQSSLT--GEDEVLEYLEKLGFEAEVVAEE----KFPFEELIVLELV 187 (188)
T ss_pred EEEEEEcccC--CHHHHHHHHHHCCCeeeeeeec----ccCCceEEEEEEe
Confidence 9888764332 13445566654 7877665432 2345555555443
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-13 Score=113.72 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=78.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||+|||+|..+..++..++..|+++|.|+.+......++... .....+.+...++.+... ...||+
T Consensus 119 ~~~g~--~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~-~~~~~v~~~~~~ie~lp~----~~~FD~ 191 (314)
T TIGR00452 119 PLKGR--TILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL-DNDKRAILEPLGIEQLHE----LYAFDT 191 (314)
T ss_pred CCCCC--EEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh-ccCCCeEEEECCHHHCCC----CCCcCE
Confidence 34667 99999999999998888888768999999984332222111111 011334555555443321 247999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++..++|+..+...+++.++++|+|||.+++.+
T Consensus 192 V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 192 VFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999999999999999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-13 Score=113.42 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=79.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHH-HHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMP-ALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~-~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..++ +|||||||+|..+..++..++..|+++|.|+.+. .......... ...++.+...++.... . .+.||+
T Consensus 121 l~g~--~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp---~-~~~FD~ 192 (322)
T PRK15068 121 LKGR--TVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLP---A-LKAFDT 192 (322)
T ss_pred CCCC--EEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCC---C-cCCcCE
Confidence 4667 9999999999999999988876899999998432 2111111111 1234677776654433 2 467999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++..++|+..+...+++.++++|+|||.+++..
T Consensus 193 V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 193 VFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999999999999999999999999999998853
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.8e-13 Score=102.58 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=76.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+++ +|||||||+|..+..++..+. +++++|+++.+... .+ +.....+.... ....++||+|+
T Consensus 22 ~~~--~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~~-------~~~~~~~~~~~---~~~~~~fD~i~ 83 (161)
T PF13489_consen 22 PGK--RVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----RN-------VVFDNFDAQDP---PFPDGSFDLII 83 (161)
T ss_dssp TTS--EEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----TT-------SEEEEEECHTH---HCHSSSEEEEE
T ss_pred CCC--EEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----hh-------hhhhhhhhhhh---hccccchhhHh
Confidence 556 999999999999999988888 99999999832222 11 12232221111 12346899999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++.++++..+...+++.+.++|+|||.+++....+.
T Consensus 84 ~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 84 CNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred hHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999999999999999999999999999999998764
|
... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=109.61 Aligned_cols=103 Identities=13% Similarity=0.223 Sum_probs=76.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..+|. +|||||||.|.+++.+|+. |+ +|+++++|+. ...+++.+...+ +..++.+...|+.+. +++|
T Consensus 60 l~~G~--~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~------~~~f 128 (273)
T PF02353_consen 60 LKPGD--RVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDL------PGKF 128 (273)
T ss_dssp --TT---EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG---------S-
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeecccc------CCCC
Confidence 67899 9999999999999999988 98 9999999985 456666555554 556777777776433 3489
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|.|++..++.+. ...+.+++.+.++|+|||++++-.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999998654 688999999999999999998754
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-13 Score=108.92 Aligned_cols=120 Identities=13% Similarity=0.191 Sum_probs=93.9
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
+...-.+.+...+. ..+|+ +|||||||.|.+++.+|+. +. +|+++++|+. ...+++.+...+
T Consensus 56 AQ~~k~~~~~~kl~-------------L~~G~--~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~g 119 (283)
T COG2230 56 AQRAKLDLILEKLG-------------LKPGM--TLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARG 119 (283)
T ss_pred HHHHHHHHHHHhcC-------------CCCCC--EEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcC
Confidence 33444555666555 67999 9999999999999999988 77 9999999995 455555555555
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+..++++...||.+.. +.||-|++...+.+. +..+.+++.+.++|+|||++++-...+
T Consensus 120 --l~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 120 --LEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred --CCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 4466788888876655 459999999999654 459999999999999999988865433
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=106.19 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=92.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|..+..+++. +..+++++|+|+. +..++.+....+ +..++.+...|..... ..++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~----~~~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDP----FPDTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCC----CCCCCCEeehHH
Confidence 7999999999999888876 2238999999984 556666665544 4456677777764432 135799999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC-------------hhHHHHHHHHHh-cCceEEEec
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRS-------------PEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-------------~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
++++..+...+++.+.++|+|||.+++...... ......+.+.+. .+|.+....
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 998888899999999999999999998764211 112344555555 488876654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.6e-13 Score=109.63 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=77.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..++.. ++ +|+++|+++. +..++.+... ..++.+...|+.... ..+++|
T Consensus 50 l~~~~--~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~~---~~~~~F 118 (263)
T PTZ00098 50 LNENS--KVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKKD---FPENTF 118 (263)
T ss_pred CCCCC--EEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccCC---CCCCCe
Confidence 44667 9999999999999888765 55 9999999984 4444443221 234677776654322 234689
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|++.+++++. .+...+++.+.++|+|||.+++.+.
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999998877654 3789999999999999999999865
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-13 Score=111.33 Aligned_cols=125 Identities=18% Similarity=0.328 Sum_probs=89.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.|. +|+++|.|+ ++..++++...+.. .+.+...|..... .+++||+|
T Consensus 120 ~~~--~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l----~v~~~~~D~~~~~----~~~~fD~I 188 (287)
T PRK12335 120 KPG--KALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL----NIRTGLYDINSAS----IQEEYDFI 188 (287)
T ss_pred CCC--CEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC----ceEEEEechhccc----ccCCccEE
Confidence 445 899999999999999999887 999999998 46667776665542 3456665554332 25689999
Q ss_pred EEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEeec-----------ChhHHHHHHHHHhcCceEEEec
Q 026858 144 IAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQLR-----------SPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~~r-----------~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
++..++++ .+.+..+++.+.++|+|||.+++..... .......+.+.+. +|++....
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~-~~~i~~~~ 258 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ-DWEIVKYN 258 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC-CCEEEEEe
Confidence 99988764 3578899999999999999977643111 0122344555554 47776654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-14 Score=101.30 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=56.0
Q ss_pred EEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEccc
Q 026858 72 IELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAADV 148 (232)
Q Consensus 72 LElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~~~ 148 (232)
||||||+|.++..++.. ...+++++|+|+ ++..+++....... . ......+......... .++||+|+++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN---D--NFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC---c--ceeEEEeecCChhhcccccccceehhhhh
Confidence 79999999999888766 334999999998 44344444443321 1 2222233222221111 248999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEE
Q 026858 149 VYIEESAAQLVRAMEALVADDGVV 172 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l 172 (232)
+++.+++..+++.++++|+|||.+
T Consensus 76 l~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S-HHHHHHHHTTT-TSS-EE
T ss_pred HhhhhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=115.92 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=108.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.++ +|||+|||||.+++.+++.|+.+|+++|+|+ ++..+++|+..|+... .++.+...|+.+... ...++||+|
T Consensus 538 ~g~--rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~-~~v~~i~~D~~~~l~--~~~~~fDlI 612 (702)
T PRK11783 538 KGK--DFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSG-RQHRLIQADCLAWLK--EAREQFDLI 612 (702)
T ss_pred CCC--eEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-cceEEEEccHHHHHH--HcCCCcCEE
Confidence 457 9999999999999999998887899999998 6889999999887321 357777777543211 123579999
Q ss_pred EEcccCCCc-----------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCCCCCCC-C
Q 026858 144 IAADVVYIE-----------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYG-Y 211 (232)
Q Consensus 144 i~~~~~~~~-----------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~ 211 (232)
++.++.+.. .+...++..+.++|+|||.+++....+.... ........++.+..+.....+++|. .
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~--~~~~~~~~g~~~~~i~~~~~~~Dhp~~ 690 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM--DEEGLAKLGLKAEEITAKTLPPDFARN 690 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh--hHHHHHhCCCeEEEEecCCCCCCCCCC
Confidence 997765432 1356788888999999999988765554321 1222233589999999888888874 4
Q ss_pred CceE-EEEEE
Q 026858 212 EETD-VYILR 220 (232)
Q Consensus 212 ~~~~-l~~~~ 220 (232)
+++| .|.|.
T Consensus 691 ~~~~~~~~~~ 700 (702)
T PRK11783 691 PKIHNCWLIT 700 (702)
T ss_pred cccceeEEEe
Confidence 5555 56554
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=102.96 Aligned_cols=101 Identities=26% Similarity=0.427 Sum_probs=75.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. ++||||||.|..++.+|++|+ .|+++|.|+. +..+.+-+.... + .+.....|+.... .++.||+|
T Consensus 30 ~~g--~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~--l--~i~~~~~Dl~~~~----~~~~yD~I 98 (192)
T PF03848_consen 30 KPG--KALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG--L--DIRTRVADLNDFD----FPEEYDFI 98 (192)
T ss_dssp -SS--EEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-----TEEEEE-BGCCBS-----TTTEEEE
T ss_pred CCC--cEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC--c--eeEEEEecchhcc----ccCCcCEE
Confidence 445 899999999999999999999 9999999994 666655444443 2 2677777776554 24679999
Q ss_pred EEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAADVVY--IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.-+++ ..+.++.+++.+.+.++|||.+++..
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 9865553 67788999999999999999988853
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=107.03 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=76.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. +|||+|||+|.++..++..+. +++++|+|+. +..++.+.. ...+...|+.... ..+++||+|
T Consensus 42 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~---~~~~~fD~V 107 (251)
T PRK10258 42 KFT--HVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLP---LATATFDLA 107 (251)
T ss_pred CCC--eEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCc---CCCCcEEEE
Confidence 345 899999999999988888776 9999999984 444443221 1134444443322 234579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+++.++++..+...++..+.++|+|||.+++.....
T Consensus 108 ~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 108 WSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999888899999999999999999999986543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=107.04 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=73.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||||||+|.++..+++. +. +++++|+|+. +..++. .+ +.+...|..... ..++||
T Consensus 29 ~~~--~vLDlGcG~G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~---~~-------~~~~~~d~~~~~----~~~~fD 91 (255)
T PRK14103 29 RAR--RVVDLGCGPGNLTRYLARRWPGA-VIEALDSSPEMVAAARE---RG-------VDARTGDVRDWK----PKPDTD 91 (255)
T ss_pred CCC--EEEEEcCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHh---cC-------CcEEEcChhhCC----CCCCce
Confidence 556 9999999999999988876 44 8999999984 333322 11 345555543221 245899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999988899999999999999999999864
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-12 Score=102.10 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=81.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.+++ +|||+|||+|..+..+++. + ..+++++|+++ ++..++.+..... . .++.+...|..... ...++|
T Consensus 44 ~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~---~~~~~f 115 (231)
T TIGR02752 44 QAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG--L-HNVELVHGNAMELP---FDDNSF 115 (231)
T ss_pred CCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC--C-CceEEEEechhcCC---CCCCCc
Confidence 3567 9999999999999988865 2 34999999998 4666666655443 2 34666666654432 224689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|+++.++++..+...+++.+.++|+|||.+++.+.
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 9999998888888889999999999999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.8e-12 Score=113.39 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..++.++.. ++ +++++|+|+ ++..++++... ...++.+...|+.... ..+++||+
T Consensus 266 ~~~--~vLDiGcG~G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~~---~~~~~fD~ 335 (475)
T PLN02336 266 PGQ--KVLDVGCGIGGGDFYMAENFDV-HVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKKT---YPDNSFDV 335 (475)
T ss_pred CCC--EEEEEeccCCHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccCC---CCCCCEEE
Confidence 456 9999999999999888875 66 899999998 45555554431 2345677777765543 12457999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|++..++++..+...+++.++++|+|||.+++.+..
T Consensus 336 I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 336 IYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 999999999899999999999999999999998653
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.6e-12 Score=104.60 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=78.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
++. +|||||||+|..+..+++. +..+++++|.|+ ++..++++...+. ...++.+...++.... .+.+
T Consensus 56 ~~~--~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~ 126 (247)
T PRK15451 56 PGT--QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIA-----IENA 126 (247)
T ss_pred CCC--EEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCC-----CCCC
Confidence 556 8999999999999888762 223999999998 5667777766543 2335677666654332 2358
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+|+++.++++. .....+++.++++|+|||.+++.+...
T Consensus 127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 999998887643 345789999999999999999987543
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-12 Score=103.15 Aligned_cols=99 Identities=18% Similarity=0.184 Sum_probs=75.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||||||+|.++..++.. +..+++++|+|+. +..++++. .++.+...|..... ...+||
T Consensus 30 ~~~~--~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~--------~~~~~~~~d~~~~~----~~~~fD 95 (258)
T PRK01683 30 ENPR--YVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL--------PDCQFVEADIASWQ----PPQALD 95 (258)
T ss_pred cCCC--EEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC--------CCCeEEECchhccC----CCCCcc
Confidence 3556 9999999999999888876 3349999999984 44444331 12355555543221 235899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999888899999999999999999998864
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-11 Score=96.86 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=81.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++... ..+++++|+++ ++..++++...+. ....+.+...|..... ...+.||
T Consensus 51 ~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~---~~~~~~D 123 (239)
T PRK00216 51 PGD--KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALP---FPDNSFD 123 (239)
T ss_pred CCC--eEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCC---CCCCCcc
Confidence 456 99999999999999888774 35999999998 4556666554332 2234566666654433 2245799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 124 ~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 124 AVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 999998888888999999999999999999988754
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-11 Score=94.08 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|.+++.+++.. ..+++++|.++ ++..+++|+..+. + .++.+...+... ...++||+
T Consensus 31 ~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~--~-~~i~~~~~d~~~-----~~~~~~D~ 100 (187)
T PRK08287 31 RAK--HLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG--C-GNIDIIPGEAPI-----ELPGKADA 100 (187)
T ss_pred CCC--EEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC--C-CCeEEEecCchh-----hcCcCCCE
Confidence 566 99999999999999998763 34899999998 5677777777654 2 235555554321 12357999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-Cc
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VF 195 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f 195 (232)
|++.... ..+..+++.+.+.|+|||++++..... .....+.+.+++ +|
T Consensus 101 v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~--~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 101 IFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILL--ENLHSALAHLEKCGV 149 (187)
T ss_pred EEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecH--hhHHHHHHHHHHCCC
Confidence 9986543 346778999999999999998865332 223445555543 55
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.5e-11 Score=95.61 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=81.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||+|||+|..+..+++. +.++|+++|.++ ++..+.+++... .++.+...|............+|
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l~~~~ 142 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHVVEKV 142 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhccccC
Confidence 44777 9999999999999999876 334899999998 455454444322 12455555544321111123569
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec------Ch-hHHHHHHHHHh-cCceEEEecC
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR------SP-EAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r------~~-~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
|+|++... .+.....+++++.++|||||.++++-+.+ .+ ...+...+.++ .+|+......
T Consensus 143 D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 143 DVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred CEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 99996422 12233456899999999999999942221 11 11122334554 4898776654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.9e-12 Score=100.52 Aligned_cols=126 Identities=8% Similarity=-0.003 Sum_probs=87.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeec-CCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYW-NNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+++. +..+++++|+|+ ++..++++...+. . .++.+...|+ ..... ....+.||
T Consensus 40 ~~~--~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~--~-~~v~~~~~d~~~~l~~-~~~~~~~D 113 (202)
T PRK00121 40 DAP--IHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG--L-TNLRLLCGDAVEVLLD-MFPDGSLD 113 (202)
T ss_pred CCC--eEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC--C-CCEEEEecCHHHHHHH-HcCccccc
Confidence 445 9999999999999988876 334899999998 5777777776654 2 3467777766 32110 01245799
Q ss_pred EEEEcccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEE
Q 026858 142 LVIAADVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 142 ~Ii~~~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~ 198 (232)
.|++..+..+.. ....+++.+.++|+|||.+++...... ......+.++ .++.++
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--YAEYMLEVLSAEGGFLV 177 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHhCccccc
Confidence 999865432211 257889999999999999999875443 2344555554 477665
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=105.88 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=88.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..+..+++. +..+++++|.++. +..++++... .++.+...|..... ...+.||+
T Consensus 113 ~~~--~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~------~~i~~i~gD~e~lp---~~~~sFDv 181 (340)
T PLN02490 113 RNL--KVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL------KECKIIEGDAEDLP---FPTDYADR 181 (340)
T ss_pred CCC--EEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc------cCCeEEeccHHhCC---CCCCceeE
Confidence 456 9999999999998888765 3348999999984 4444443321 12455555543322 23467999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC--------------hhHHHHHHHHHhc-CceEEEecC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS--------------PEAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~--------------~~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
|+++.++++..+...+++++.++|+|||++++...... ....+.+.+.+++ +|....+.+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 99999998888889999999999999999988653211 1124556666665 897666543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-11 Score=100.23 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=85.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.+++. ...+++++|+|+ ++..+++|+..++ +..++.+...|+.... ..++||+|++++
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~~~----~~~~fD~Iv~NP 197 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFAAL----PGRKYDLIVSNP 197 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhcc----CCCCccEEEECC
Confidence 8999999999999999976 223999999998 5788888888775 3345777777764322 124799999987
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEe
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~ 200 (232)
+..... ....++..+.++|+|||.+++-... . .+.+.+.+.+ +|.+...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~---~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-S---MEALEEAYPDVPFTWLEF 272 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-C---HHHHHHHHHhCCCceeee
Confidence 643211 1356788889999999999875432 2 2355555554 5655443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=102.71 Aligned_cols=106 Identities=11% Similarity=0.182 Sum_probs=80.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|..++.+++. +. .+++++|+++ ++..++++...... .++.+...++.... ..+++
T Consensus 75 ~~~g~--~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~---~~v~~~~~d~~~l~---~~~~~ 146 (272)
T PRK11873 75 LKPGE--TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY---TNVEFRLGEIEALP---VADNS 146 (272)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC---CCEEEEEcchhhCC---CCCCc
Confidence 34677 9999999999988877765 43 3799999998 46666766655432 24566666654322 23458
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|+++.++++..+...+++.+.++|+|||++++..
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998888888888999999999999999999964
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7e-12 Score=98.09 Aligned_cols=117 Identities=12% Similarity=0.173 Sum_probs=83.2
Q ss_pred CCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEE
Q 026858 68 RRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVI 144 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii 144 (232)
+..|||+|||||..=-+.-.. ++ +|+++|.++ +...+.+.+.++.+. ++..+.+...+..++ .++++|.||
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~-svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPIN-SVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccCCCCc-eEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeechhcCcccccCCeeeEE
Confidence 457899999999644333322 45 999999999 455666666665322 444444444444432 356899999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHH
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEM 190 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~ 190 (232)
+..++=+.++....+.++.++|+|||++++..+.+.. .....+++.
T Consensus 151 ~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 151 CTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred EEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence 9999988899999999999999999999999887752 333444443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-11 Score=99.12 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=79.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|..+..++.. ...+++++|.++. +..++++... ....+.+...|..... ...+.
T Consensus 17 ~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~~~---~~~~~ 87 (241)
T PRK08317 17 VQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADGLP---FPDGS 87 (241)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEecccccCC---CCCCC
Confidence 44667 9999999999999888865 2348999999984 4444444221 2234566666554322 23467
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++..++.+..+...+++.+.++|+|||.+++..
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999888899999999999999999999875
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=97.82 Aligned_cols=112 Identities=22% Similarity=0.339 Sum_probs=80.9
Q ss_pred cEEEeCccccHHHHHHHHhCC-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGL-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||||.+++.++.... .+|+++|+|+ ++..++.|+..++. .++.....||-.. ..++||+||+++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~-----~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEP-----LRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccc-----cCCceeEEEeCC
Confidence 699999999999999998742 3999999999 68899999999873 3344444465433 345899999987
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
+.-..+ ....++..+.+.|+|||.+++-..... .+...+.+.
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q---~~~v~~~~~ 251 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ---GEAVKALFE 251 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc---HHHHHHHHH
Confidence 764322 256677778889999888887653232 234444444
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=101.58 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=77.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH--HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV--MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~--~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
...++ +|||||||.|..+..++..|++.|+|+|.+.. ++...-+...+ ....+....+.+.... . .+.|
T Consensus 113 ~L~gk--~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg---~~~~~~~lplgvE~Lp---~-~~~F 183 (315)
T PF08003_consen 113 DLKGK--RVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG---QDPPVFELPLGVEDLP---N-LGAF 183 (315)
T ss_pred CcCCC--EEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC---CCccEEEcCcchhhcc---c-cCCc
Confidence 55788 99999999999999999999989999999873 22222111111 1112233333333322 2 4689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|+|++..++||..+.-..+..++..|++||.+++-
T Consensus 184 DtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 184 DTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred CEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99999999999999999999999999999999873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-11 Score=97.24 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEE
Q 026858 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLT 96 (232)
Q Consensus 18 ~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~ 96 (232)
+++...++.+.. + +.+..|.+.+...... ..... +|||+|||+|.+++.+++. +..+++++
T Consensus 55 ~~~~v~~~vf~p--r--~~Te~Lv~~~l~~~~~------------~~~~~--~vLDlg~GsG~i~l~la~~~~~~~v~~v 116 (251)
T TIGR03704 55 LRIAVDPGVFVP--R--RRTEFLVDEAAALARP------------RSGTL--VVVDLCCGSGAVGAALAAALDGIELHAA 116 (251)
T ss_pred eEEEECCCCcCC--C--ccHHHHHHHHHHhhcc------------cCCCC--EEEEecCchHHHHHHHHHhCCCCEEEEE
Confidence 345555554421 1 3466677776554320 11234 8999999999999998865 33389999
Q ss_pred cchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc----------------------
Q 026858 97 DISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE---------------------- 153 (232)
Q Consensus 97 D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------- 153 (232)
|+|+ ++..+++|+..++ +.+...|+...... ...++||+|+++++.....
T Consensus 117 Dis~~al~~A~~N~~~~~------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~ 189 (251)
T TIGR03704 117 DIDPAAVRCARRNLADAG------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGA 189 (251)
T ss_pred ECCHHHHHHHHHHHHHcC------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCC
Confidence 9998 5778888887664 14555665432210 1135799999987754211
Q ss_pred ----cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCCC
Q 026858 154 ----SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHED 204 (232)
Q Consensus 154 ----~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~ 204 (232)
....++..+.++|+|||.+++...... ...+...+. .+|......+..
T Consensus 190 dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 190 DGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred cHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHHHCCCCceeeEccc
Confidence 134777888899999999998764333 344555555 378776665443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-10 Score=92.55 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=86.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|.+++.+++. +..+++++|.++ +++.+++|+..++ +..++.+...|..... ....+.
T Consensus 38 ~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l--~~~~~~ 111 (198)
T PRK00377 38 LRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEIL--FTINEK 111 (198)
T ss_pred CCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhH--hhcCCC
Confidence 44677 9999999999999998865 234899999998 5677777777664 2234566665543321 122357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~ 198 (232)
||.|++.. ....+..+++.+.++|+|||++++... .........+.++ .+|.++
T Consensus 112 ~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 112 FDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLE 166 (198)
T ss_pred CCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeE
Confidence 99999854 235678899999999999999987432 2233455555554 366443
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-12 Score=91.98 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=79.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||+|||+|.+++.+++.+..+++++|+++ .+..++.+...+. ...++.+...|+..... ....++||+|+++++
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHH-TCTTT-EEEEEE--S
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchh-hccCceeEEEEECCC
Confidence 8999999999999999988744999999999 4677777777765 34557777777644331 123468999999888
Q ss_pred CCCc--------ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIE--------ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~--------~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+... .....+++.+.++|+|||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 7632 2356789999999999999998764
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=100.40 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
++. +|||||||+|..+..+++. +..+++++|+|+ ++..+++++.... ...++.+...|+.... ...+
T Consensus 53 ~~~--~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~ 123 (239)
T TIGR00740 53 PDS--NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVE-----IKNA 123 (239)
T ss_pred CCC--EEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCC-----CCCC
Confidence 456 8999999999999888764 223899999998 5666666654432 2234677776665433 2358
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+|+++.++++. .+...+++.+.++|+|||.+++.+..+
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 999998887654 356889999999999999999987544
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=101.96 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=93.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
+++ +|||+|||+|.+++.++..++.+|+++|+|+ ++..+++|+..|+... .++.+...|+..... .....++||+
T Consensus 220 ~g~--rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~-~~v~~i~~D~~~~l~~~~~~~~~fDl 296 (396)
T PRK15128 220 ENK--RVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_pred CCC--eEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-CcEEEEEccHHHHHHHHHhcCCCCCE
Confidence 457 9999999999999988777777999999999 5888899999887321 356777776543221 1111347999
Q ss_pred EEEcccCCCcc---------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-----cCceEEEecCCCCCCC
Q 026858 143 VIAADVVYIEE---------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-----EVFLIEKVPHEDLHPD 208 (232)
Q Consensus 143 Ii~~~~~~~~~---------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-----~~f~~~~~~~~~~~~~ 208 (232)
|++.++.+... ....++....++|+|||.++.+..... ...+.|.+.+. .+-+++-+.....+++
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~D 375 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIADAAIDAGRDVQFIEQFRQAAD 375 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHHHHHHcCCeEEEEEEcCCCCC
Confidence 99877765332 345556677889999999998654443 23455655442 2345555544433333
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=98.93 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=81.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..+++.++ +++++|.++. +..+..+...... .+.+...++..... ...+.||
T Consensus 46 ~~~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~fD 116 (233)
T PRK05134 46 GLFGK--RVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL----KIDYRQTTAEELAA--EHPGQFD 116 (233)
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC----ceEEEecCHHHhhh--hcCCCcc
Confidence 44667 999999999999998888877 8999999984 5555555544331 23454444433221 1236799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|+++.++.+..+...+++.+.+.|+|||.+++....+
T Consensus 117 ~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred EEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 99999999888889999999999999999999876543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-12 Score=98.50 Aligned_cols=120 Identities=21% Similarity=0.277 Sum_probs=80.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
++||+|||.|.++..+|... .+++++|+++ ++..+++.... ..+|.+...++.... ..++||+|+++.+
T Consensus 46 ~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~----P~~~FDLIV~SEV 115 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFW----PEGRFDLIVLSEV 115 (201)
T ss_dssp EEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT-------SS-EEEEEEES-
T ss_pred eeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCC----CCCCeeEEEEehH
Confidence 89999999999999999886 4999999998 45555543321 245788888876554 2568999999999
Q ss_pred CCCcc---cHHHHHHHHHHhhCCCcEEEEEEeecC--------hhHHHHHHHHHhcCc-eEEEe
Q 026858 149 VYIEE---SAAQLVRAMEALVADDGVVLLGYQLRS--------PEAHKLFWEMCAEVF-LIEKV 200 (232)
Q Consensus 149 ~~~~~---~~~~~l~~l~~~l~pgG~l~i~~~~r~--------~~~~~~~~~~~~~~f-~~~~~ 200 (232)
+|+.. ++..++..+...|+|||.+++... |+ +...+...+++.+-+ +++.+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~-rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA-RDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE--HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 98654 467789999999999999999763 32 122455556666544 34443
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-11 Score=95.93 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=72.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|..+..+++. + ..+|+++|+++ ++..+++|+..++ ...++.+...|...... ..++
T Consensus 70 ~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~---~~~~ 142 (205)
T PRK13944 70 PRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLE---KHAP 142 (205)
T ss_pred CCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCc---cCCC
Confidence 34667 9999999999999888875 2 34899999998 4566777776654 33346667666544321 2357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||.|++.....+ +.+.+.+.|+|||++++..
T Consensus 143 fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 143 FDAIIVTAAAST------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ccEEEEccCcch------hhHHHHHhcCcCcEEEEEE
Confidence 999998766542 3357889999999998765
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-10 Score=85.65 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=73.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||+|||+|..+..+++. +..+++++|+++ ++..++++...+.. .++.+...+...... ....+||
T Consensus 18 ~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~D 90 (124)
T TIGR02469 18 RPGD--VLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV---SNIVIVEGDAPEALE--DSLPEPD 90 (124)
T ss_pred CCCC--EEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC---CceEEEeccccccCh--hhcCCCC
Confidence 3556 9999999999999999876 334899999998 46667776665531 134555544332111 1235799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.|++.... .....+++.+.+.|+|||.+++..
T Consensus 91 ~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGSG---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEECCcc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 99986543 345789999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-10 Score=99.50 Aligned_cols=140 Identities=19% Similarity=0.223 Sum_probs=94.6
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
+.+..+.+.+..... ++. +|||+|||+|.+++.+++. +..+++++|+|+ +++.+++|.+.+
T Consensus 236 peTE~LVe~aL~~l~---------------~~~--rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~ 298 (423)
T PRK14966 236 PETEHLVEAVLARLP---------------ENG--RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL 298 (423)
T ss_pred ccHHHHHHHhhhccC---------------CCC--EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 556677777765443 445 8999999999999988865 334999999998 577888888766
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-------------------------cHHHHHHHHHHhhC
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-------------------------SAAQLVRAMEALVA 167 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~ 167 (232)
. .++.+...|+..... + ..++||+|+++++..... ....+++.+.+.|+
T Consensus 299 g----~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk 372 (423)
T PRK14966 299 G----ARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA 372 (423)
T ss_pred C----CcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC
Confidence 4 246777777744321 1 134799999987653211 14467777888999
Q ss_pred CCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 168 DDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 168 pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
|||.+++...... .+...+.+. .+|...++
T Consensus 373 pgG~lilEiG~~Q---~e~V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 373 EGGFLLLEHGFDQ---GAAVRGVLAENGFSGVET 403 (423)
T ss_pred CCcEEEEEECccH---HHHHHHHHHHCCCcEEEE
Confidence 9999876543222 334555554 36754433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=97.69 Aligned_cols=102 Identities=18% Similarity=0.275 Sum_probs=76.8
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++... ..+++++|+|+ ++..+++|+..+. +..++.+...|+.... ...+||+|++++
T Consensus 117 ~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~~~----~~~~fDlIvsNP 190 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFEPL----AGQKIDIIVSNP 190 (284)
T ss_pred EEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhccC----cCCCccEEEECC
Confidence 89999999999999998763 23999999998 5788888888775 3345788887775432 123799999976
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+..... ....++..+.+.|+|||.+++-..
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 543221 355678888899999999887653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=93.18 Aligned_cols=137 Identities=13% Similarity=0.016 Sum_probs=89.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc-CC--------CCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRN-KP--------VLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~-~~--------~~~~~i~~~~~d~~~~~~~~ 134 (232)
++. +|||+|||.|..++.+|.+|. +|+++|+|+. ++.++...... .. .-..++.+...|+.....
T Consensus 34 ~~~--rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~-- 108 (213)
T TIGR03840 34 AGA--RVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA-- 108 (213)
T ss_pred CCC--eEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc--
Confidence 456 999999999999999999999 9999999994 55432211100 00 012345666666544331
Q ss_pred cCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeec------Ch---hHHHHHHHHHhcCceEEEecCC
Q 026858 135 ALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLR------SP---EAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r------~~---~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
...+.||.|+-..++. ..+.....++.+.++|+|||++++..... .+ .....+.+.+...|.++.+...
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~ 188 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESR 188 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeec
Confidence 0124699999766553 45677889999999999999866653321 11 2345566666667888777655
Q ss_pred CCC
Q 026858 204 DLH 206 (232)
Q Consensus 204 ~~~ 206 (232)
..+
T Consensus 189 ~~~ 191 (213)
T TIGR03840 189 DVL 191 (213)
T ss_pred ccc
Confidence 444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-11 Score=94.68 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=79.3
Q ss_pred CcEEEeCccccHHHHHHHHh-CC------CcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 69 RRAIELGAGCGAAGMAFYLL-GL------ADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~-~~------~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
+++||++||||-+++.+.+. +. ++|+..|+|+-| ....+..++....-..++.+...| .+.+++.+..|
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d---AE~LpFdd~s~ 178 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD---AEDLPFDDDSF 178 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC---cccCCCCCCcc
Confidence 39999999999999888765 22 599999999954 333333333221111224444443 34455566799
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|...++..+.+..+++..+++.+|+|||||++++.....
T Consensus 179 D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred eeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 999999999999999999999999999999999876444
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=92.40 Aligned_cols=135 Identities=15% Similarity=0.060 Sum_probs=88.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC---------CCCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK---------PVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~---------~~~~~~i~~~~~d~~~~~~~~ 134 (232)
++. +|||+|||.|..++.+|..|+ +|+++|+|+ +++.+........ .....++.+...|+.....
T Consensus 37 ~~~--rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~-- 111 (218)
T PRK13255 37 AGS--RVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA-- 111 (218)
T ss_pred CCC--eEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc--
Confidence 456 999999999999999999999 999999998 3554322110000 0012345666665544321
Q ss_pred cCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC------h---hHHHHHHHHHhcCceEEEecCC
Q 026858 135 ALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRS------P---EAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~------~---~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
...+.||.|+-..++. ..+.....++.+.++|+|||++++...... + -..+.+.+.+...|.++.+...
T Consensus 112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~ 191 (218)
T PRK13255 112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQ 191 (218)
T ss_pred ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeec
Confidence 1124799999766553 556788999999999999997555322111 1 2355666666656888777654
Q ss_pred C
Q 026858 204 D 204 (232)
Q Consensus 204 ~ 204 (232)
.
T Consensus 192 ~ 192 (218)
T PRK13255 192 D 192 (218)
T ss_pred c
Confidence 4
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.6e-11 Score=100.24 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=84.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++.. +..+++++|+|+ ++..+++|++.++ +..++.+...|+.... ..++||+|++++
T Consensus 136 ~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~l----~~~~fDlIvsNP 209 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFAAL----PGRRYDLIVSNP 209 (307)
T ss_pred EEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhhhC----CCCCccEEEECC
Confidence 8999999999999999876 334999999998 5788888888775 3345777777764322 124799999986
Q ss_pred cCCCcc-------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEe
Q 026858 148 VVYIEE-------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 148 ~~~~~~-------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~ 200 (232)
+..... ....+++.+.+.|+|||.+++-.. .. ...+.+.+.. +|.+...
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g-~~---~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG-NS---RVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC-cC---HHHHHHHHhhCCCEEEEe
Confidence 643211 135678889999999999988542 22 2235554443 5555444
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.7e-12 Score=88.74 Aligned_cols=93 Identities=23% Similarity=0.368 Sum_probs=67.3
Q ss_pred EEEeCccccHHHHHHHHh---C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 71 AIELGAGCGAAGMAFYLL---G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~---~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
|||+|||+|..+..+++. + ..+++++|+|+ ++..++++...... ++.+...|+.+. +...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~----~~~~~~~D~~~l---~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP----KVRFVQADARDL---PFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT----TSEEEESCTTCH---HHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC----ceEEEECCHhHC---cccCCCeeEEEE
Confidence 799999999999888876 3 14999999999 46666666554332 467888877553 234568999999
Q ss_pred ccc-C--CCcccHHHHHHHHHHhhCCCc
Q 026858 146 ADV-V--YIEESAAQLVRAMEALVADDG 170 (232)
Q Consensus 146 ~~~-~--~~~~~~~~~l~~l~~~l~pgG 170 (232)
+.. + .+.+.+..+++.+.++++|||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 544 4 355689999999999999997
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-10 Score=92.15 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=92.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.+. +|||+|||+|.+++.++..++.+++++|.++ ++..+++|++.++. .++.+...|+..... ....+||+|
T Consensus 53 ~~~--~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~~~l~--~~~~~fDlV 125 (199)
T PRK10909 53 VDA--RCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA---GNARVVNTNALSFLA--QPGTPHNVV 125 (199)
T ss_pred CCC--EEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEEchHHHHHh--hcCCCceEE
Confidence 456 9999999999999876555666999999998 57788888887752 246777766543221 123469999
Q ss_pred EEcccCCCcccHHHHHHHHHHh--hCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEAL--VADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~--l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
++.++ |.....+.+++.+... ++|++.+++...... .+.. ...+|...+.. .+....+..+++
T Consensus 126 ~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~-----~~~~-~~~~~~~~~~k--------~yG~s~~~~~~~ 190 (199)
T PRK10909 126 FVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVEN-----GLPT-VPANWQLHREK--------VAGQVAYRLYIR 190 (199)
T ss_pred EECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC-----Cccc-CCCccEEEEEe--------cCCCEEEEEEEE
Confidence 98776 5555667777777764 789898887764332 1111 22345544433 344555555555
Q ss_pred cCcchhh
Q 026858 222 KKKEEEE 228 (232)
Q Consensus 222 ~~~~~~~ 228 (232)
..+++++
T Consensus 191 ~~~~~~~ 197 (199)
T PRK10909 191 EAQGESD 197 (199)
T ss_pred CCCCCCc
Confidence 5555543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=96.10 Aligned_cols=138 Identities=20% Similarity=0.221 Sum_probs=93.0
Q ss_pred echHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHh
Q 026858 34 WPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 34 W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
.+.+..+.+++..... ..++. +|||+|||+|..++.++... ..+++++|+++ ++..++.|..
T Consensus 90 r~~te~l~~~~~~~~~-------------~~~~~--~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~- 153 (275)
T PRK09328 90 RPETEELVEWALEALL-------------LKEPL--RVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK- 153 (275)
T ss_pred CCCcHHHHHHHHHhcc-------------ccCCC--EEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-
Confidence 3556677777764433 33556 89999999999999998763 34999999998 5677777776
Q ss_pred cCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc--------------------------cHHHHHHHHHHh
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE--------------------------SAAQLVRAMEAL 165 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~ 165 (232)
+. ...++.+...|+.... ..++||+|+++++..... ....+++.+.++
T Consensus 154 ~~--~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 154 HG--LGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred hC--CCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 21 2345677777764332 136899999977653221 235677888899
Q ss_pred hCCCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 166 VADDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 166 l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
|+|||.+++...... .+.+.+.+. .+|.
T Consensus 228 Lk~gG~l~~e~g~~~---~~~~~~~l~~~gf~ 256 (275)
T PRK09328 228 LKPGGWLLLEIGYDQ---GEAVRALLAAAGFA 256 (275)
T ss_pred cccCCEEEEEECchH---HHHHHHHHHhCCCc
Confidence 999999998553222 234555554 3675
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-11 Score=95.84 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=74.9
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|..+..+++.+ ..+++++|+++.+ ..++.... .++.+...|..... ..+++||+|+++.
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~---~~~~~fD~vi~~~ 106 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLP---LEDSSFDLIVSNL 106 (240)
T ss_pred eEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCC---CCCCceeEEEEhh
Confidence 89999999999998888773 3378999999843 33333221 13456666654432 2346799999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++++..+...++..+.++|+|||.+++...
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999888999999999999999999998764
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-11 Score=93.84 Aligned_cols=124 Identities=12% Similarity=0.069 Sum_probs=84.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|..+..+|+. +..+++++|+++ ++..+.+++...+ + .++.+...|+..........+.+|.|+++.
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--L-KNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--C-CCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 8999999999999988876 334999999998 4666666666543 2 246777776643221111234799999876
Q ss_pred cCCCccc--------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc--CceEE
Q 026858 148 VVYIEES--------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE--VFLIE 198 (232)
Q Consensus 148 ~~~~~~~--------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~--~f~~~ 198 (232)
+..+.+. .+.+++.+.++|+|||.+++...... ..+.+.+.+.. .|...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--LFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHhCCCeEec
Confidence 5433322 25789999999999999999875443 23444555543 35543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=93.55 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=93.3
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHH
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLK 110 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~ 110 (232)
-++.+..+.+++.+... ..+. +|||+|||+|..+..++.. +..+++++|+++ ++..++.+..
T Consensus 69 p~~~~~~l~~~~l~~~~--------------~~~~--~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 69 PRPDTEELVEAALERLK--------------KGPL--RVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CCCChHHHHHHHHHhcc--------------cCCC--eEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34566666666665432 1334 8999999999999999876 333999999998 5677777777
Q ss_pred hcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc--------------------------HHHHHHHHHH
Q 026858 111 RNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES--------------------------AAQLVRAMEA 164 (232)
Q Consensus 111 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~--------------------------~~~~l~~l~~ 164 (232)
.+.. .++.+...|+.... ..++||+|++++++..... ...+++.+.+
T Consensus 133 ~~~~---~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 133 RLGL---DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred HcCC---CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 6542 23667776664422 2467999999877643211 2467889999
Q ss_pred hhCCCcEEEEEEeecChhHHHHHHHHHh-cCceE
Q 026858 165 LVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLI 197 (232)
Q Consensus 165 ~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~ 197 (232)
+|+|||.+++...... .+.+.+.+. .+|..
T Consensus 206 ~L~~gG~~~~~~~~~~---~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 206 LLKPGGWLLLEIGYDQ---GEAVRALFEAAGFAD 236 (251)
T ss_pred hcccCCEEEEEECccH---HHHHHHHHHhCCCCc
Confidence 9999999998754332 233444444 36643
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=98.78 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=80.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. +|||||||+|..++.+++. +..+++++|.+++++.+++++...+ +.+++.+...|..... .+.+|+|
T Consensus 149 ~~~--~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~-----~~~~D~v 219 (306)
T TIGR02716 149 GVK--KMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG--VADRMRGIAVDIYKES-----YPEADAV 219 (306)
T ss_pred CCC--EEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCC--ccceEEEEecCccCCC-----CCCCCEE
Confidence 456 9999999999999988877 3238999999767777777777655 4456778877764322 1247999
Q ss_pred EEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+++.++|... ....+++++++.|+|||++++.+.
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9988887543 346799999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=93.93 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=72.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCC--CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGL--ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~--~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|..+..+++... .+|+++|+++ ++..+++++..+. + .++.+...|...... ...+
T Consensus 75 ~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g--~-~~v~~~~~d~~~~~~---~~~~ 146 (215)
T TIGR00080 75 LKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG--L-DNVIVIVGDGTQGWE---PLAP 146 (215)
T ss_pred CCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC--C-CCeEEEECCcccCCc---ccCC
Confidence 44667 999999999999998887732 3699999998 4667777777664 2 346666666543321 2357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++..+.. .+...+.+.|+|||++++..
T Consensus 147 fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 147 YDRIYVTAAGP------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCEEEEcCCcc------cccHHHHHhcCcCcEEEEEE
Confidence 99999875432 23456788999999998864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-10 Score=89.51 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=82.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----ccC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-----NAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~ 136 (232)
.++. +|||||||||..+..+++. + ..+|+++|++++. .. ..+.+...|+...... ...
T Consensus 50 ~~~~--~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~---------~~----~~v~~i~~D~~~~~~~~~i~~~~~ 114 (209)
T PRK11188 50 KPGM--TVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------PI----VGVDFLQGDFRDELVLKALLERVG 114 (209)
T ss_pred CCCC--EEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc---------CC----CCcEEEecCCCChHHHHHHHHHhC
Confidence 3566 8999999999999988876 2 2489999998821 11 2257777777664311 112
Q ss_pred CCCccEEEEcccCCCccc-----------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 137 KPPFDLVIAADVVYIEES-----------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~-----------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
.++||+|+++...+.... ...+++.+.++|+|||.+++..... .....++..+...|.-.++
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~v~~ 187 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTKVKV 187 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceEEEE
Confidence 467999998664543221 2568899999999999999965333 2345667777777764444
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-10 Score=98.17 Aligned_cols=108 Identities=11% Similarity=0.073 Sum_probs=80.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||+|||||.+.+.++..+. +++++|+++ ++..++.|+...+.. . +.+...|..+.. ...+.||+
T Consensus 181 ~~g~--~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~--~-i~~~~~D~~~l~---~~~~~~D~ 251 (329)
T TIGR01177 181 TEGD--RVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIE--D-FFVKRGDATKLP---LSSESVDA 251 (329)
T ss_pred CCcC--EEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCC--C-CeEEecchhcCC---cccCCCCE
Confidence 4667 899999999999988888787 999999998 567778887765522 2 455566554432 22468999
Q ss_pred EEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++++++... .....+++.+.++|+|||++++..+...
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~ 298 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI 298 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence 9997665311 1257889999999999999998876553
|
This family is found exclusively in the Archaea. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-10 Score=88.37 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=96.8
Q ss_pred cceeec---hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCC-cEEEEcchh-HHHH
Q 026858 30 GTSVWP---CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLA-DIVLTDISP-VMPA 104 (232)
Q Consensus 30 g~~~W~---~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~-~v~~~D~s~-~~~~ 104 (232)
.+-+|= +...+.+|+..+....+ ..-... +|||||||.|.+-..+++.+.. .++++|+|+ ++..
T Consensus 38 ~GEvWFg~~ae~riv~wl~d~~~~~r---------v~~~A~--~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 38 EGEVWFGEDAEERIVDWLKDLIVISR---------VSKQAD--RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred ccceecCCcHHHHHHHHHHhhhhhhh---------hccccc--ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 345563 34457788877654110 011222 8999999999999999998765 499999999 4555
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCC----C----cccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY----I----EESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~----~----~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.-++++. +.+.|.|.++|..++.. ..++||+|+--..+- + ..-+.-.+..+.++|+|||+++|..
T Consensus 107 A~niAe~~~--~~n~I~f~q~DI~~~~~---~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS 181 (227)
T KOG1271|consen 107 AQNIAERDG--FSNEIRFQQLDITDPDF---LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS 181 (227)
T ss_pred HHHHHHhcC--CCcceeEEEeeccCCcc---cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe
Confidence 444444444 45568999999988743 456788887432221 1 1122445677899999999999976
Q ss_pred eecChhHHHHHHHHHhc-CceEE
Q 026858 177 QLRSPEAHKLFWEMCAE-VFLIE 198 (232)
Q Consensus 177 ~~r~~~~~~~~~~~~~~-~f~~~ 198 (232)
-+.. ..++-+...+ +|.+.
T Consensus 182 CN~T---~dELv~~f~~~~f~~~ 201 (227)
T KOG1271|consen 182 CNFT---KDELVEEFENFNFEYL 201 (227)
T ss_pred cCcc---HHHHHHHHhcCCeEEE
Confidence 6554 3344444443 56543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=102.06 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=74.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|.++..+++. ++ +|+++|+|+. +..++++.. . . .+.+...|+.. ..++|
T Consensus 165 l~~g~--rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~--l--~v~~~~~D~~~------l~~~f 229 (383)
T PRK11705 165 LKPGM--RVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--G--L--PVEIRLQDYRD------LNGQF 229 (383)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--c--C--eEEEEECchhh------cCCCC
Confidence 34677 9999999999999988876 66 9999999984 455555442 1 1 24444444322 24679
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|.|++..++++. ...+.+++.+.++|+|||.+++..
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998887654 456889999999999999999864
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=101.81 Aligned_cols=104 Identities=13% Similarity=0.235 Sum_probs=84.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+.++ .|||+|||||.+++..|+.|+.+|+++|-|++...+.+.+..|+ +...+++.+..+.... ++ .++.|+
T Consensus 58 lf~dK--~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~--~~~ii~vi~gkvEdi~-LP--~eKVDi 130 (346)
T KOG1499|consen 58 LFKDK--TVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNG--LEDVITVIKGKVEDIE-LP--VEKVDI 130 (346)
T ss_pred hcCCC--EEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcC--ccceEEEeecceEEEe-cC--ccceeE
Confidence 67999 99999999999999999999999999999998888888888887 4456777766655542 22 368999
Q ss_pred EEE---cccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 143 VIA---ADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 143 Ii~---~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
|++ ..+++....+...+-.=-+.|+|||.++
T Consensus 131 IvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 997 4555666778888888888999999854
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-11 Score=97.88 Aligned_cols=128 Identities=23% Similarity=0.300 Sum_probs=87.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-c-cCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-N-ALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~-~~~~~fD~Ii~~~ 147 (232)
++||||||||+.+..+-..-. +++++|+|+.|...+.. +.. +..+-......+ + ....+||+|++.+
T Consensus 128 ~~lDLGCGTGL~G~~lR~~a~-~ltGvDiS~nMl~kA~e--Kg~--------YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDMAD-RLTGVDISENMLAKAHE--KGL--------YDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred eeeecccCcCcccHhHHHHHh-hccCCchhHHHHHHHHh--ccc--------hHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 999999999999988876644 89999999943322221 111 000000000000 0 1245799999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEE-------------eecChhHHHHHHHHHhc-CceEEEecCCCCCCC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGY-------------QLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPD 208 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~-------------~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~ 208 (232)
++.+...++.++.....+|+|||.+.++. +.|+.....-....+.. +|.+..+.+..+...
T Consensus 197 Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 197 VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 99989999999999999999999999862 23333334445556664 999998887766555
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.7e-10 Score=102.18 Aligned_cols=122 Identities=17% Similarity=0.295 Sum_probs=83.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++.. +..+++++|+|+ ++..++.|+..++ +..++.+...|+.... ..++||+|++++
T Consensus 141 ~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~~~----~~~~fDlIvsNP 214 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFENI----EKQKFDFIVSNP 214 (506)
T ss_pred EEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC--CccceeeeecchhhhC----cCCCccEEEECC
Confidence 8999999999999988765 334999999998 6778888887765 3345677777654321 134799999977
Q ss_pred cCCCcc--------------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 148 VVYIEE--------------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 148 ~~~~~~--------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+..... ....+++.+.++|+|||.+++...... .+...+.+. .+|....+
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q---~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQ---EEAVTQIFLDHGYNIESV 291 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCch---HHHHHHHHHhcCCCceEE
Confidence 653211 134467788889999999987543222 334444444 36754443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=89.34 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=92.5
Q ss_pred ccceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHH
Q 026858 29 VGTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPA 104 (232)
Q Consensus 29 ~g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~ 104 (232)
.-.|+|.--.- |+.-+..-.. .+...++. +|||||||+|..+..++.. + ..+|+++|+++. ++.
T Consensus 105 ~eyR~w~p~rSKlaa~i~~g~~----------~l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d 172 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAIIGGVA----------NIPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD 172 (293)
T ss_pred ceeeeeCCcccHHHHHHHCCcc----------eeccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH
Confidence 34789974332 5544433322 11145777 9999999999999999987 2 358999999973 333
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC----
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS---- 180 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~---- 180 (232)
+....... .++.+...|...........+.+|+|++... .+.....++.++.++|||||.+++..+.+.
T Consensus 173 Ll~~ak~r-----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g 245 (293)
T PTZ00146 173 LTNMAKKR-----PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCIDST 245 (293)
T ss_pred HHHHhhhc-----CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccccC
Confidence 33222211 1235555554433212222357999997542 345556677889999999999999644332
Q ss_pred hhHHHHH---HHHHh-cCceEEEec
Q 026858 181 PEAHKLF---WEMCA-EVFLIEKVP 201 (232)
Q Consensus 181 ~~~~~~~---~~~~~-~~f~~~~~~ 201 (232)
+...+.| .+.++ .+|+..+..
T Consensus 246 ~~pe~~f~~ev~~L~~~GF~~~e~v 270 (293)
T PTZ00146 246 AKPEVVFASEVQKLKKEGLKPKEQL 270 (293)
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEE
Confidence 1112222 23444 478765554
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-10 Score=91.72 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=79.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCC--CcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGL--ADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~--~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+++... .+++++|+++. +..++.+.. ...++.+...+..... ...+.||
T Consensus 39 ~~~--~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~~---~~~~~~D 108 (223)
T TIGR01934 39 KGQ--KVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFIQADAEALP---FEDNSFD 108 (223)
T ss_pred CCC--eEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-----cCCCceEEecchhcCC---CCCCcEE
Confidence 556 999999999999988887743 38999999984 455555443 1233566666554432 2245799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+|+++..+++..+...+++.+.+.|+|||++++....
T Consensus 109 ~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 109 AVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999988888889999999999999999999987643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=93.57 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=80.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.+. +|||+|||+|.++..+++.+. +++++|.++ ++..++.+...+.. ..+.+...+...... ...++||+|
T Consensus 45 ~~~--~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~--~~~~~~D~i 116 (224)
T TIGR01983 45 FGL--RVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL---LKIEYRCTSVEDLAE--KGAKSFDVV 116 (224)
T ss_pred CCC--eEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhc--CCCCCccEE
Confidence 456 999999999999998888777 799999998 45566665554431 124555544432221 113579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
++...+++..+...+++.+.+.|+|||.+++....+
T Consensus 117 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 117 TCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred EehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999888899999999999999999999876443
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-10 Score=91.90 Aligned_cols=114 Identities=13% Similarity=0.199 Sum_probs=79.0
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhc
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
++..+...+.+... ..++. +|||||||+|..+..+++. + ..+|+++|+++ ++..+++++...
T Consensus 60 ~~p~~~~~~~~~l~-------------~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~ 124 (212)
T PRK13942 60 SAIHMVAIMCELLD-------------LKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL 124 (212)
T ss_pred CcHHHHHHHHHHcC-------------CCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 44555555655555 45677 9999999999999888876 3 24999999998 466777777665
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+. .++.+...|...... ..++||+|++..... .....+.+.|+|||++++..
T Consensus 125 g~---~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 125 GY---DNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CC---CCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCCCcEEEEEE
Confidence 42 246666666443321 235799999865432 23346778999999988854
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-10 Score=96.88 Aligned_cols=157 Identities=17% Similarity=0.112 Sum_probs=109.9
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
.|-.....-+++.... .|+ +||++.|-||..|+.+|..|+++||.+|+|. ++..+++|...
T Consensus 201 fFlDqR~~R~~l~~~~----------------~Gk--rvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 201 FFLDQRDNRRALGELA----------------AGK--RVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred eeHHhHHHHHHHhhhc----------------cCC--eEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHh
Confidence 4555566666665532 478 9999999999999999999999999999998 69999999999
Q ss_pred cCCCCCCceEEEEeecCCCcccccCC-CCccEEEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALK-PPFDLVIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
|+.. ..++.+...|+-......... .+||+||+.++-+.. .+...++..+.++|+|||.++++...+..
T Consensus 263 Ng~~-~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 263 NGLD-GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred cCCC-ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 9833 133455555432221111122 379999997777632 25677888899999999999998766653
Q ss_pred hHHHHHHHHHh-----cCceEEEecCCCCCCCC
Q 026858 182 EAHKLFWEMCA-----EVFLIEKVPHEDLHPDY 209 (232)
Q Consensus 182 ~~~~~~~~~~~-----~~f~~~~~~~~~~~~~~ 209 (232)
..+.|.+.+. .+...+.+.....++++
T Consensus 342 -~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~ 373 (393)
T COG1092 342 -SSDLFLEIIARAAAAAGRRAQEIEGEGQPPDH 373 (393)
T ss_pred -CHHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence 2444544332 24566666656666665
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.3e-10 Score=86.10 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=89.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +++|+|||||.+++.++.. ...+++++|.++ ++...++|+++.+. +++.....+.-.. +...+ +|
T Consensus 32 ~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~---~n~~vv~g~Ap~~--L~~~~-~~ 103 (187)
T COG2242 32 PRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV---DNLEVVEGDAPEA--LPDLP-SP 103 (187)
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC---CcEEEEeccchHh--hcCCC-CC
Confidence 56888 9999999999999999965 345999999998 68899999987762 3355555543222 22222 79
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-Cc-eEEEec
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VF-LIEKVP 201 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f-~~~~~~ 201 (232)
|.|+.... ..++.+++.+...|+|||++++....- +......+.+++ ++ ++..+.
T Consensus 104 daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 104 DAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred CEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEE
Confidence 99998754 678999999999999999999876433 223334444443 66 555543
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=91.53 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=65.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||||..+..+++. +. +++++|.|+. +..++.+ . .....+... .+..+++||+|+++.
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~~~-~v~gvD~S~~Ml~~a~~~---~--------~~~~~d~~~---lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVFKY-YVVALDYAENMLKMNLVA---D--------DKVVGSFEA---LPFRDKSFDVVMSSF 118 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhcCC-EEEEECCCHHHHHHHHhc---c--------ceEEechhh---CCCCCCCEEEEEecC
Confidence 8999999999999998887 55 9999999994 4433321 1 122333322 233467899999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCC
Q 026858 148 VVYIEESAAQLVRAMEALVADD 169 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pg 169 (232)
++++..+.+.++++++++|+|.
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCc
Confidence 9998899999999999999994
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=92.82 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=72.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.++..++..+. +++++|+|+. +..++++...+. ...++.+...|+... .++||+|
T Consensus 55 ~~~--~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~------~~~fD~i 123 (219)
T TIGR02021 55 KGK--RVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSL------CGEFDIV 123 (219)
T ss_pred CCC--EEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhC------CCCcCEE
Confidence 456 999999999999999988776 9999999984 556666555443 223466666655432 2679999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEE
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i 174 (232)
++.+++++. .....++..+.+++++++.+.+
T Consensus 124 i~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 124 VCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 998887543 4577888999998887655544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=105.47 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=75.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..+++. +..+++++|+|+. +..++.+....+ .++.+...|..+... ...+++||+
T Consensus 418 ~g~--rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g----~~ie~I~gDa~dLp~-~fedeSFDv 490 (677)
T PRK06922 418 KGD--TIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG----RSWNVIKGDAINLSS-SFEKESVDT 490 (677)
T ss_pred CCC--EEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC----CCeEEEEcchHhCcc-ccCCCCEEE
Confidence 566 9999999999998888764 3349999999994 556655543322 234555555433211 123467999
Q ss_pred EEEcccCCC-------------cccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 143 VIAADVVYI-------------EESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 143 Ii~~~~~~~-------------~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+++.++++ ......+++.+.++|+|||.+++.+.
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999877753 24678899999999999999999864
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.7e-09 Score=82.82 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=62.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
...++ +|+|+|||||.+++.++..|+.+|+++|+++ +++.++.|..+. ...+.+...|+.+. .+.+|
T Consensus 43 ~l~g~--~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~------~~~~d 110 (198)
T COG2263 43 DLEGK--TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDF------RGKFD 110 (198)
T ss_pred CcCCC--EEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhc------CCccc
Confidence 45777 8999999999999999999988999999998 578888888773 34567777766443 46899
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.++.++++.
T Consensus 111 tvimNPPFG 119 (198)
T COG2263 111 TVIMNPPFG 119 (198)
T ss_pred eEEECCCCc
Confidence 999999885
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=91.97 Aligned_cols=99 Identities=21% Similarity=0.173 Sum_probs=76.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|.|||||+|..+-.+++. +...++|+|.|+.|...++... .+..+...|...-.. ....|+++++.+
T Consensus 33 ~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~p----~~~~dllfaNAv 101 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWKP----EQPTDLLFANAV 101 (257)
T ss_pred eeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcCC----CCccchhhhhhh
Confidence 8999999999999988877 4449999999995443333221 123666665544331 346899999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+++-.+...++..+...|.|||.+.+-.+..
T Consensus 102 lqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 102 LQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999999999999999999999999876533
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-09 Score=84.19 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=83.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||+|||+|.+++.+++. +..+++++|.++ ++..+++|+..+.. .++.+...|.... .......+|
T Consensus 39 ~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~~--~~~~~~~~d 111 (196)
T PRK07402 39 EPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPEC--LAQLAPAPD 111 (196)
T ss_pred CCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHHH--HhhCCCCCC
Confidence 3567 9999999999999988865 334999999998 56777788776542 2356666554321 111223467
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHHHh-cCceEEEec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~~~-~~f~~~~~~ 201 (232)
.++... ...+..+++.+.++|+|||++++....... ......++.+. .++++..+.
T Consensus 112 ~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (196)
T PRK07402 112 RVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAA 169 (196)
T ss_pred EEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 766532 346788999999999999999988754431 11223333333 367766654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=95.06 Aligned_cols=180 Identities=17% Similarity=0.130 Sum_probs=108.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.++-+|-.+.|.-..| -.||. .......-+|+.+.. .++ +||++.|-||..|+.++.
T Consensus 85 ~~~v~E~gl~f~v~l~~g-qktGl--FlDqR~nR~~v~~~~----------------~gk--rvLnlFsYTGgfsv~Aa~ 143 (286)
T PF10672_consen 85 FFTVEENGLKFRVDLTDG-QKTGL--FLDQRENRKWVRKYA----------------KGK--RVLNLFSYTGGFSVAAAA 143 (286)
T ss_dssp EEEEEETTEEEEEESSSS-SSTSS---GGGHHHHHHHHHHC----------------TTC--EEEEET-TTTHHHHHHHH
T ss_pred ceEEEECCEEEEEEcCCC-CcceE--cHHHHhhHHHHHHHc----------------CCC--ceEEecCCCCHHHHHHHH
Confidence 344555555555554444 44553 233344445665543 457 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc------ccHHHHHH
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE------ESAAQLVR 160 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~------~~~~~~l~ 160 (232)
.|+.+|+.+|.|. ++..+++|...|+.. ..++.+...|+-.....-...++||+||+.++.+.. .+...++.
T Consensus 144 gGA~~v~~VD~S~~al~~a~~N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~ 222 (286)
T PF10672_consen 144 GGAKEVVSVDSSKRALEWAKENAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLR 222 (286)
T ss_dssp TTESEEEEEES-HHHHHHHHHHHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 9998999999998 689999999999743 245677777653322111123589999997776532 25677888
Q ss_pred HHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCC
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYG 210 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~ 210 (232)
.+.++++|||.++++..... -..+.|.+.+.. .-+++-+.+...+++|.
T Consensus 223 ~a~~ll~~gG~l~~~scs~~-i~~~~l~~~~~~~a~~~~~~~~~~~p~df~ 272 (286)
T PF10672_consen 223 RAMKLLKPGGLLLTCSCSHH-ISPDFLLEAVAEAAREVEFIERLGQPPDFP 272 (286)
T ss_dssp HHHHTEEEEEEEEEEE--TT-S-HHHHHHHHHHHHHHCEEEEEEE------
T ss_pred HHHHhcCCCCEEEEEcCCcc-cCHHHHHHHHHHhCccceEeeeeccccccc
Confidence 88899999999988776555 334556664442 23333334444455554
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=8e-10 Score=89.12 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=71.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|..+..+++... +++++|.++. +..+++++.... + .++.+...|...... ..++||
T Consensus 76 ~~~~~--~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~---~~~~fD 146 (212)
T PRK00312 76 LKPGD--RVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAKRRLKQLG--L-HNVSVRHGDGWKGWP---AYAPFD 146 (212)
T ss_pred CCCCC--EEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHHHHHHHCC--C-CceEEEECCcccCCC---cCCCcC
Confidence 44667 999999999999988887754 8999999984 566677766553 2 125666665433211 235799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|++...+. .+.+.+.+.|+|||++++...
T Consensus 147 ~I~~~~~~~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 147 RILVTAAAP------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEEEccCch------hhhHHHHHhcCCCcEEEEEEc
Confidence 999875443 234667899999999998764
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.9e-11 Score=93.78 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=87.9
Q ss_pred cEEEeCccccHHHHHHHHh----CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCc-ccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL----GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQD-QINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~fD~I 143 (232)
+|||+|||.|.+...+.+. +. .+.+.|.|+ ++.....+...+. .++.....|...+. ..+...+++|+|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l-~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRL-KVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCe-EEEEcCCChHHHHHHHhccccch----hhhcccceeccchhccCCCCcCccceE
Confidence 7999999999999988775 24 899999999 5666666554443 23344455555544 223345789999
Q ss_pred EEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHH
Q 026858 144 IAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE 189 (232)
Q Consensus 144 i~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~ 189 (232)
++..++. +++.+..++.++.++|||||.+++.++.++..+...|.+
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~ 196 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKK 196 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccC
Confidence 9988885 678899999999999999999999999998776666663
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=102.62 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=75.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||||||+|..+..+++.+. +++++|+++. +...+ ..+. ...++.+...|..... .+...++||+|
T Consensus 37 ~~~--~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~---~~~~--~~~~i~~~~~d~~~~~-~~~~~~~fD~I 107 (475)
T PLN02336 37 EGK--SVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNE---SING--HYKNVKFMCADVTSPD-LNISDGSVDLI 107 (475)
T ss_pred CCC--EEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHH---HHhc--cCCceEEEEecccccc-cCCCCCCEEEE
Confidence 456 899999999999999998765 9999999984 33222 2222 1234677777765322 12234689999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++..++++..+ ...+++.+.++|+|||++++.+
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99998876544 6889999999999999998863
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-09 Score=83.78 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=75.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----c
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-----A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-----~ 135 (232)
..++. +|||+|||+|.++..++.. +..+++++|+++.+ .. ..+.+...|+.+..... .
T Consensus 30 i~~g~--~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~----~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 30 IKPGD--TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI----ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred cCCCC--EEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC----CCceEEEeeCCChhHHHHHHHHh
Confidence 34677 9999999999999888765 33479999999843 11 12456666665432100 1
Q ss_pred CCCCccEEEEcccCC----C-c------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 136 LKPPFDLVIAADVVY----I-E------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~----~-~------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
..++||+|++..+.+ + . .....++..+.++|+|||++++...... ....++..+...|.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFE 164 (188)
T ss_pred CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhc
Confidence 234799999854321 1 1 1236789999999999999998653322 23455665555453
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-10 Score=94.05 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=77.0
Q ss_pred CCCCCcEEEeCccccH-HHHHHHH-h-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGA-AGMAFYL-L-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~-~s~~la~-~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
+.+ +|+|||||+|- .++.++. . ...+++++|.++. ...++++... ...+..++.|...|..+... ..+.|
T Consensus 123 ~p~--~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-~~gL~~rV~F~~~Da~~~~~---~l~~F 196 (296)
T PLN03075 123 VPT--KVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-DPDLSKRMFFHTADVMDVTE---SLKEY 196 (296)
T ss_pred CCC--EEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-ccCccCCcEEEECchhhccc---ccCCc
Confidence 556 99999999764 4454543 3 3448999999995 5555555533 22356678999888765321 23579
Q ss_pred cEEEEcccCCC-cccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYI-EESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~-~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|++...+|+ .++...+++.+.+.|+|||.+++..
T Consensus 197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99999844444 3789999999999999999999975
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.4e-10 Score=98.24 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=99.0
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV 115 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~ 115 (232)
+..|.+.+.+... ..++. +|||+|||+|.+++.+++.+. +++++|+|+ ++..++.|+..++.
T Consensus 282 ~e~l~~~vl~~l~-------------~~~~~--~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~- 344 (443)
T PRK13168 282 NQKMVARALEWLD-------------PQPGD--RVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERARENARRNGL- 344 (443)
T ss_pred HHHHHHHHHHHhc-------------CCCCC--EEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCC-
Confidence 4556666666554 34667 999999999999999998875 999999998 67788888887752
Q ss_pred CCCceEEEEeecCCCcc-cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcC
Q 026858 116 LNKSLKTSVLYWNNQDQ-INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEV 194 (232)
Q Consensus 116 ~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~ 194 (232)
.++.+...|+..... .....++||+|++.++-.. ....++.+.+ ++|++.+++++.... ....+..+.+.+
T Consensus 345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~t--laRDl~~L~~~g 416 (443)
T PRK13168 345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPAT--LARDAGVLVEAG 416 (443)
T ss_pred --CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHH--hhccHHHHhhCC
Confidence 247888887754321 1112356999998655332 3456666666 589999999874433 123344444678
Q ss_pred ceEEEecCCC
Q 026858 195 FLIEKVPHED 204 (232)
Q Consensus 195 f~~~~~~~~~ 204 (232)
|+++++...+
T Consensus 417 Y~l~~i~~~D 426 (443)
T PRK13168 417 YRLKRAGMLD 426 (443)
T ss_pred cEEEEEEEec
Confidence 9998886554
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-09 Score=86.66 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=66.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..++.. +..+++++|+|+ ++..++.+.. .+.+...+... +..+++||+
T Consensus 43 ~~~--~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~----~~~~~sfD~ 108 (204)
T TIGR03587 43 KIA--SILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFD----PFKDNFFDL 108 (204)
T ss_pred CCC--cEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccC----CCCCCCEEE
Confidence 455 8999999999999888876 334999999999 4454444321 12445555443 123568999
Q ss_pred EEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+++.++++. ..+..+++.+.+++ ++.+++..
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999998644 45677888888876 45666653
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.6e-11 Score=98.24 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=73.0
Q ss_pred CCcEEEeCccccH----HHHHHHHh-C-----CCcEEEEcchh-HHHHHHHHHH-----hcC------------------
Q 026858 68 RRRAIELGAGCGA----AGMAFYLL-G-----LADIVLTDISP-VMPALKHNLK-----RNK------------------ 113 (232)
Q Consensus 68 ~~~VLElGcGtG~----~s~~la~~-~-----~~~v~~~D~s~-~~~~~~~n~~-----~~~------------------ 113 (232)
+.+|+|+|||||. +++.++.. + ..+|+++|+|+ ++..+++..- .+.
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3499999999996 44455443 1 13899999999 4555544320 000
Q ss_pred -CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 114 -PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 114 -~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+...+.+...|...... ..++||+|+|.+++++. .....+++.++++|+|||.+++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 0112356777777765432 24689999998888644 466789999999999999999875
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=92.06 Aligned_cols=101 Identities=18% Similarity=0.267 Sum_probs=67.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||||||+|.+++.+++.+. +|+++|+|+ ++..++++....... ....+.+...|+.. ..+.||
T Consensus 144 ~~~--~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~------l~~~fD 214 (315)
T PLN02585 144 AGV--TVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES------LSGKYD 214 (315)
T ss_pred CCC--EEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh------cCCCcC
Confidence 456 999999999999999999887 999999999 566666665443110 01234555554421 246899
Q ss_pred EEEEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEE--SAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++.+++++.. ....+++.+.++ .++|. ++..
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe
Confidence 999999875433 344566666654 45444 4443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.4e-09 Score=82.32 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=104.8
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHh
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
+.++.|.+-+.+... .+.....+ -+||||||+|..+-++++. +...+.++|+|+ +++.....++.
T Consensus 23 EDTFlLlDaLekd~~----------eL~~~~~~--i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~ 90 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAA----------ELKGHNPE--ICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC 90 (209)
T ss_pred chhhHHHHHHHHHHH----------HHhhcCce--eEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh
Confidence 457788888876544 00011234 7999999999999888765 444899999999 57777777777
Q ss_pred cCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc---------------------cHHHHHHHHHHhhCCCc
Q 026858 112 NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE---------------------SAAQLVRAMEALVADDG 170 (232)
Q Consensus 112 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------~~~~~l~~l~~~l~pgG 170 (232)
|... +...+.|...... .++-|+++.+++.-..+ ....++..+..+|+|.|
T Consensus 91 n~~~----~~~V~tdl~~~l~----~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G 162 (209)
T KOG3191|consen 91 NRVH----IDVVRTDLLSGLR----NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG 162 (209)
T ss_pred cCCc----cceeehhHHhhhc----cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc
Confidence 7643 3555665544432 36789999877653211 25667777788889999
Q ss_pred EEEEEEeecChhHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 171 VVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 171 ~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
.+++....++. -+...+.++ ++|.+........ ..+...++++.+
T Consensus 163 v~Ylv~~~~N~--p~ei~k~l~~~g~~~~~~~~Rk~----~~E~l~ilkf~r 208 (209)
T KOG3191|consen 163 VFYLVALRANK--PKEILKILEKKGYGVRIAMQRKA----GGETLSILKFTR 208 (209)
T ss_pred eEEeeehhhcC--HHHHHHHHhhcccceeEEEEEec----CCceEEEEEEEe
Confidence 99999877763 234444555 4777665543331 233345555543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-10 Score=95.87 Aligned_cols=103 Identities=15% Similarity=0.232 Sum_probs=82.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++.++ .|||+|||+|++++++|+.|+++|++++.|++.+.+++-+..|. +..+|.+....+++.+ .+++.|+
T Consensus 175 DF~~k--iVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~--~~~rItVI~GKiEdie----LPEk~Dv 246 (517)
T KOG1500|consen 175 DFQDK--IVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNN--LADRITVIPGKIEDIE----LPEKVDV 246 (517)
T ss_pred ccCCc--EEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCC--ccceEEEccCcccccc----CchhccE
Confidence 78999 99999999999999999999999999999998888888777775 6778888888776655 3578999
Q ss_pred EEEcc---cCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIAAD---VVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~~~---~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
||+-+ .+++...++..+. .++.|+|.|..+=
T Consensus 247 iISEPMG~mL~NERMLEsYl~-Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLH-ARKWLKPNGKMFP 280 (517)
T ss_pred EEeccchhhhhhHHHHHHHHH-HHhhcCCCCcccC
Confidence 99733 2345555555543 4599999998664
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-10 Score=77.23 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=74.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|+|+|||+|..+..++.....+++++|.++. +..+.+....+ ....+.+...++.+... ...++||+|+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPP--EADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhcc--ccCCceEEEEEccc
Confidence 58999999999998888754459999999984 44444322222 22345666666554432 12357999999998
Q ss_pred CCC-cccHHHHHHHHHHhhCCCcEEEEE
Q 026858 149 VYI-EESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 149 ~~~-~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++. ......+++.+.+.++|+|.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 887 888999999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.4e-10 Score=88.15 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=75.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC-cc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP-FD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-fD 141 (232)
..+. +|||++||+|.+++.++..|+.+++++|.++ ++..+++|+..+. ...++.+...|............. ||
T Consensus 48 ~~g~--~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 48 IQGA--HLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred cCCC--EEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhccCCCce
Confidence 3567 9999999999999999999888999999998 5778888888876 334566666665332110011223 56
Q ss_pred EEEEcccCCCcccHHHHHHHHHH--hhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEA--LVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~--~l~pgG~l~i~~ 176 (232)
+|+ .++.|.......++..+.+ +++++|.+++-.
T Consensus 124 vv~-~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIY-LDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEE-ECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 666 5666666667777776655 567777666544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-09 Score=91.63 Aligned_cols=107 Identities=11% Similarity=0.005 Sum_probs=78.8
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+||||||+|..++.+|+. +...++|+|+++ ++..+.+++..++ + .++.+...|...... ...++++|.|+++.
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g--L-~NV~~i~~DA~~ll~-~~~~~s~D~I~lnF 200 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN--L-KNLLIINYDARLLLE-LLPSNSVEKIFVHF 200 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC--C-CcEEEEECCHHHhhh-hCCCCceeEEEEeC
Confidence 8999999999999999887 334999999998 5667777666654 2 236777766543221 12246899999876
Q ss_pred cCCCcccH------HHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 148 VVYIEESA------AQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 148 ~~~~~~~~------~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+.-|+... +.++..+.++|+|||.+.+.+....
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~ 239 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSEL 239 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHH
Confidence 65444332 6899999999999999999875443
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.8e-10 Score=90.03 Aligned_cols=96 Identities=23% Similarity=0.367 Sum_probs=68.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +|+++|.|+ ++..++++..... ...++.+...|+.. ..+.||+|
T Consensus 63 ~~~--~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~------~~~~fD~v 131 (230)
T PRK07580 63 TGL--RILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAG--LAGNITFEVGDLES------LLGRFDTV 131 (230)
T ss_pred CCC--EEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCchh------ccCCcCEE
Confidence 456 899999999999999998887 799999998 4556666554433 22346666665321 24679999
Q ss_pred EEcccCCC--cccHHHHHHHHHHhhCCCcE
Q 026858 144 IAADVVYI--EESAAQLVRAMEALVADDGV 171 (232)
Q Consensus 144 i~~~~~~~--~~~~~~~l~~l~~~l~pgG~ 171 (232)
++..++++ ......+++.+.+.+++++.
T Consensus 132 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 132 VCLDVLIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred EEcchhhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 99988854 34667778888887654443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-10 Score=87.05 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||||||.|.+...+... ++ +..|+|+++. ...+... ++ +.+.+.|.+.... .+.+++||+|
T Consensus 13 pgs--rVLDLGCGdG~LL~~L~~~k~v-~g~GvEid~~--~v~~cv~-rG------v~Viq~Dld~gL~-~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGS--RVLDLGCGDGELLAYLKDEKQV-DGYGVEIDPD--NVAACVA-RG------VSVIQGDLDEGLA-DFPDQSFDYV 79 (193)
T ss_pred CCC--EEEecCCCchHHHHHHHHhcCC-eEEEEecCHH--HHHHHHH-cC------CCEEECCHHHhHh-hCCCCCccEE
Confidence 667 9999999999988777664 66 8999999983 2222222 22 2566777766542 2346789999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++.++......+.+++++.|+ |...+++.++-.
T Consensus 80 IlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg 113 (193)
T PF07021_consen 80 ILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFG 113 (193)
T ss_pred ehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChH
Confidence 9999998777778887776554 667888876554
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=86.98 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=67.7
Q ss_pred cEEEeCccccHHHHHHHHh----C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL----G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+|||||||+|.++..++.. | ..+++++|+++. +..++.+...+ .+.+...+..... ..+++||+|
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~~~~~~l~---~~~~~fD~V 133 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP------GVTFRQAVSDELV---AEGERFDVV 133 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC------CCeEEEEeccccc---ccCCCccEE
Confidence 8999999999988887642 2 128999999994 44444432221 1233333332221 134689999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++.++++..+ ...+++.+.++++ |.+++.+..+.
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 99999986655 4679999999988 66666665555
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.4e-09 Score=101.40 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=98.6
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
+.+..|++.+...+. . .+++. +|||||||+|.+++.+++. +..+++++|+|+ ++..++.|+..|
T Consensus 100 peTE~lve~L~~~~~-~-----------~~~~~--~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n 165 (1082)
T PLN02672 100 DWSFTFYEGLNRHPD-S-----------IFRDK--TVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLN 165 (1082)
T ss_pred hhHHHHHHHHHhccc-c-----------cCCCC--EEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 566777777543221 0 23456 8999999999999999876 334999999999 588889999886
Q ss_pred CC-------------CCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc--------------------------
Q 026858 113 KP-------------VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-------------------------- 153 (232)
Q Consensus 113 ~~-------------~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-------------------------- 153 (232)
.. ....++.+...|+..... ....+||+||++++.-...
T Consensus 166 ~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~A 243 (1082)
T PLN02672 166 ALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCA 243 (1082)
T ss_pred CcccccccccccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCcccc
Confidence 42 123467888888754331 1123699999977642111
Q ss_pred ------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHH-HHHh-cCceEEEecCCC
Q 026858 154 ------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW-EMCA-EVFLIEKVPHED 204 (232)
Q Consensus 154 ------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~-~~~~-~~f~~~~~~~~~ 204 (232)
....++....++|+|||.+++-.-.+.. +... +++. .+|...++...+
T Consensus 244 L~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~---~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 244 LQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPG---QAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH---HHHHHHHHHHCCCCeeEEeeeh
Confidence 1255677788899999998875533332 2333 2333 467766655443
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-09 Score=83.91 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=82.6
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+.-|||||||||+.+..+...|. ..+++|+|+.|...+......+ .+...|.+... ++.++.||-+|+..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~eg-------dlil~DMG~Gl--pfrpGtFDg~ISIS 120 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELEG-------DLILCDMGEGL--PFRPGTFDGVISIS 120 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhhc-------CeeeeecCCCC--CCCCCccceEEEee
Confidence 34899999999999999988886 9999999995433332222211 23444555443 44568899999866
Q ss_pred cCCCc-----------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCc
Q 026858 148 VVYIE-----------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVF 195 (232)
Q Consensus 148 ~~~~~-----------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f 195 (232)
.+.+. .-+..++..++.+|++|++.++-.+..+....+.+++... .+|
T Consensus 121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 65321 1245568889999999999999888777666666666554 465
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-09 Score=89.03 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=85.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.+. +|+++|.++ +++.+++|++.++ + .++.+...|...... ...+.||+|
T Consensus 173 ~~~--~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~--l-~~v~~~~~D~~~~~~--~~~~~~D~V 244 (315)
T PRK03522 173 PPR--SMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELG--L-TNVQFQALDSTQFAT--AQGEVPDLV 244 (315)
T ss_pred CCC--EEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcC--C-CceEEEEcCHHHHHH--hcCCCCeEE
Confidence 456 899999999999999999875 999999998 6788888888776 3 346777777643221 123469999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
++.++-. .....+++.+.+ ++|++.+++++..... ...+.. + .+|+++.+.-..
T Consensus 245 v~dPPr~--G~~~~~~~~l~~-~~~~~ivyvsc~p~t~--~rd~~~-l-~~y~~~~~~~~D 298 (315)
T PRK03522 245 LVNPPRR--GIGKELCDYLSQ-MAPRFILYSSCNAQTM--AKDLAH-L-PGYRIERVQLFD 298 (315)
T ss_pred EECCCCC--CccHHHHHHHHH-cCCCeEEEEECCcccc--hhHHhh-c-cCcEEEEEEEec
Confidence 9876622 223444455444 6788888887755442 122222 2 578888876444
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-09 Score=85.20 Aligned_cols=122 Identities=14% Similarity=0.178 Sum_probs=85.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc--cccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--INALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~fD~Ii~ 145 (232)
.+||+|||+|..++.++.. +..+++++|.|+ ++..+.+|++++. +.+.+.....+...... .+...+++|++++
T Consensus 151 ~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred eEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccccccccccccCceeEEec
Confidence 7999999999999888765 444999999999 5788889999887 55566666543333221 1223478999998
Q ss_pred cccCCCcc--------------------------cHHHHHHHHHHhhCCCcEEEEEEe--ecChhHHHHHHHHHhc
Q 026858 146 ADVVYIEE--------------------------SAAQLVRAMEALVADDGVVLLGYQ--LRSPEAHKLFWEMCAE 193 (232)
Q Consensus 146 ~~~~~~~~--------------------------~~~~~l~~l~~~l~pgG~l~i~~~--~r~~~~~~~~~~~~~~ 193 (232)
+++.-..+ .+-.+..-..+.|+|||.+++-.. .+++.....++....+
T Consensus 229 NPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~ 304 (328)
T KOG2904|consen 229 NPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKD 304 (328)
T ss_pred CCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchh
Confidence 77653222 244455667889999999999776 5555555555555443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-09 Score=90.68 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=87.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.+++.++..+. +++++|+++ ++..++.|++.++. .++.+...|+..... ....+||+|
T Consensus 233 ~~~--~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~~N~~~~~~---~~~~~~~~d~~~~~~--~~~~~~D~v 304 (374)
T TIGR02085 233 PVT--QMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQQSAQMLGL---DNLSFAALDSAKFAT--AQMSAPELV 304 (374)
T ss_pred CCC--EEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHHH--hcCCCCCEE
Confidence 456 899999999999999998775 999999998 68888889888763 256777776643221 112459999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
++.++ +. .....+++.+.+ ++|++.+++++..... ...+..+ .+|+++.+.-..
T Consensus 305 i~DPP-r~-G~~~~~l~~l~~-~~p~~ivyvsc~p~Tl--aRDl~~L--~gy~l~~~~~~D 358 (374)
T TIGR02085 305 LVNPP-RR-GIGKELCDYLSQ-MAPKFILYSSCNAQTM--AKDIAEL--SGYQIERVQLFD 358 (374)
T ss_pred EECCC-CC-CCcHHHHHHHHh-cCCCeEEEEEeCHHHH--HHHHHHh--cCceEEEEEEec
Confidence 98666 42 444666666654 6899999988753331 2223323 679888876544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-08 Score=89.40 Aligned_cols=130 Identities=17% Similarity=0.140 Sum_probs=86.8
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~ 139 (232)
.++. +|||+|||+|..+..++.. +.++++++|+++ .+..+++|+.+++.. ++.+...|....... ....++
T Consensus 251 ~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~---~v~~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 251 QPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK---SIKILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC---eEEEEeCChhhccccccccccc
Confidence 3567 9999999999999888875 234899999998 577888888877632 356666665433210 012357
Q ss_pred ccEEEEcccCCC-------cc---------------cHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHHHhc--C
Q 026858 140 FDLVIAADVVYI-------EE---------------SAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEMCAE--V 194 (232)
Q Consensus 140 fD~Ii~~~~~~~-------~~---------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~~~~--~ 194 (232)
||.|++..+... ++ ....++.++.++|+|||++++++..-++ +........+++ +
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999998544321 11 1357789999999999999887654443 223444444443 5
Q ss_pred ceEE
Q 026858 195 FLIE 198 (232)
Q Consensus 195 f~~~ 198 (232)
|...
T Consensus 406 ~~~~ 409 (434)
T PRK14901 406 WKLE 409 (434)
T ss_pred cEec
Confidence 6644
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-08 Score=81.46 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=92.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh-------cC--CCCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR-------NK--PVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~-------~~--~~~~~~i~~~~~d~~~~~~~~ 134 (232)
++. +||..|||.|.-...+|.+|+ +|+++|+|+ ++....+.... +. ..-...+.+...|+-......
T Consensus 43 ~~~--rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSS--VCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCC--eEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 456 999999999999999999999 899999999 45544331100 00 001234666666654432111
Q ss_pred cCCCCccEEEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEEeecC--------hhHHHHHHHHHhcCceEEEecCC
Q 026858 135 ALKPPFDLVIAADVV--YIEESAAQLVRAMEALVADDGVVLLGYQLRS--------PEAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~--------~~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
...+.||.|+-..++ ..++.....++.+.++|+|||.+++...... .-..+.+.+.+...|.++.+...
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~~~ 198 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELIDSK 198 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEeeec
Confidence 123579998865544 4778899999999999999999888643211 12356677777778888777643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-09 Score=82.64 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=62.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+|.++..+++.+. +++++|+++ ++..++++... ..++.+...|+..... ....||.
T Consensus 12 ~~~~--~vLEiG~G~G~lt~~l~~~~~-~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~---~~~~~d~ 80 (169)
T smart00650 12 RPGD--TVLEIGPGKGALTEELLERAA-RVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDL---PKLQPYK 80 (169)
T ss_pred CCcC--EEEEECCCccHHHHHHHhcCC-eEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCc---cccCCCE
Confidence 3556 899999999999999998865 999999998 45555555432 1345666666654431 1236999
Q ss_pred EEEcccCCCcccHHHHHHHHHHh--hCCCcEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEAL--VADDGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~--l~pgG~l~i~ 175 (232)
|+++.+++. ...++..+.+. +.++|.+++-
T Consensus 81 vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EEECCCccc---HHHHHHHHHhcCCCcceEEEEEE
Confidence 998765542 12334333332 2356666553
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-09 Score=90.99 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-C-C
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-K-P 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~-~ 138 (232)
++. +|||+|||+|..+..+++. +. +|+++|+|+ ++..+++++....+. -++.....|..+....... . .
T Consensus 63 ~~~--~iLELGcGtG~~t~~Ll~~l~~~~-~~~~iDiS~~mL~~a~~~l~~~~p~--~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGC--ELVELGSGSSRKTRLLLDALRQPA-RYVPIDISADALKESAAALAADYPQ--LEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCC--eEEecCCCcchhHHHHHHhhccCC-eEEEEECCHHHHHHHHHHHHhhCCC--ceEEEEEEcccchhhhhcccccC
Confidence 445 8999999999999888766 35 899999999 456666665543322 2345566666543221111 0 1
Q ss_pred CccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 139 PFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 139 ~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
...++++..+++ ...+...+++.++++|+|||.+++...
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 223444444554 445677899999999999999998654
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-09 Score=88.55 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=64.4
Q ss_pred cEEEeCccccHHHHHHHHh-C---CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-G---LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~---~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|||+|||+|..+..++.. + ...++++|+|+. +..++++ . ..+.+...|..+. +..+++||+|+
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~----~----~~~~~~~~d~~~l---p~~~~sfD~I~ 156 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR----Y----PQVTFCVASSHRL---PFADQSLDAII 156 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh----C----CCCeEEEeecccC---CCcCCceeEEE
Confidence 8999999999999888764 1 127999999984 4444332 1 1235666655432 22356899999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+... +..++++.++|+|||+++++.+...
T Consensus 157 ~~~~-------~~~~~e~~rvLkpgG~li~~~p~~~ 185 (272)
T PRK11088 157 RIYA-------PCKAEELARVVKPGGIVITVTPGPR 185 (272)
T ss_pred EecC-------CCCHHHHHhhccCCCEEEEEeCCCc
Confidence 8543 2245789999999999999876543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=88.45 Aligned_cols=104 Identities=15% Similarity=0.170 Sum_probs=76.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~ 138 (232)
+.+ +|||+|||+|..++.++.. +.++++++|+++ .+..+++|+..++ +..++.+...+...... + ....+
T Consensus 68 ~~~--~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAK--NTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCC--EEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 556 9999999999988877764 345999999998 5778888888776 44567777777654321 0 01135
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+||+|++.. .......++..+.++++|||.+++-
T Consensus 144 ~fD~VfiDa---~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 144 EFDFAFVDA---DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCEEEECC---CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 799999742 2245567889999999999998863
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-09 Score=83.13 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=73.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|..+-.+|+... +|+.+|..+. ...+++|+...+.. ++.+...|-..... ..++||
T Consensus 70 ~~~g~--~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~---nV~v~~gDG~~G~~---~~aPyD 140 (209)
T COG2518 70 LKPGD--RVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYE---NVTVRHGDGSKGWP---EEAPYD 140 (209)
T ss_pred CCCCC--eEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCC---ceEEEECCcccCCC---CCCCcC
Confidence 55777 999999999999999998865 9999999985 56777777766522 26777776555543 246799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.|++....-. .=+.+.+.|++||++++-.
T Consensus 141 ~I~Vtaaa~~------vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 141 RIIVTAAAPE------VPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred EEEEeeccCC------CCHHHHHhcccCCEEEEEE
Confidence 9998654431 2245678899999998854
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=90.44 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=87.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD 141 (232)
.++. +|||+|||+|.+++.+|+... +|+++|+++ ++..+++|+..++. .++.+...|+..... ......+||
T Consensus 291 ~~~~--~vLDl~cG~G~~sl~la~~~~-~V~~vE~~~~av~~a~~n~~~~~~---~nv~~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 291 QGEE--LVVDAYCGVGTFTLPLAKQAK-SVVGIEVVPESVEKAQQNAELNGI---ANVEFLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCC--EEEEcCCCcCHHHHHHHHhCC-EEEEEEcCHHHHHHHHHHHHHhCC---CceEEEeCCHHHHHHHHHhcCCCCC
Confidence 3556 899999999999999998765 999999998 67888889887762 346777777643211 111134699
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHH-HHHHHHHhcCceEEEecCCC
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAH-KLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~-~~~~~~~~~~f~~~~~~~~~ 204 (232)
+|++.++-. .....+++.+.+ ++|++.+++++.. .+. ..+..+...+|.++.+.-.+
T Consensus 365 ~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 365 VLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred EEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence 999865532 223556666554 7888888887642 223 23333344578888776443
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-09 Score=85.82 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=78.8
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|.+++.++.. +..+++++|+++. +..++++. ..+.+...|..... ...+||+|++++
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~--------~~v~~v~~D~~e~~----~~~kFDlIIsNP 134 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL--------PEAEWITSDVFEFE----SNEKFDVVISNP 134 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC--------cCCEEEECchhhhc----ccCCCcEEEEcC
Confidence 8999999999999888765 2349999999994 44444431 12345555443222 135799999998
Q ss_pred cCCCcc--c------------------HHHHHHHHHHhhCCCcEEEEEEeecC----hhHHHHHHHHHhc-CceEEE
Q 026858 148 VVYIEE--S------------------AAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 148 ~~~~~~--~------------------~~~~l~~l~~~l~pgG~l~i~~~~r~----~~~~~~~~~~~~~-~f~~~~ 199 (232)
+++... + +..++.....+|+|+|.+++++..+. .....++.+++.. +|....
T Consensus 135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEecC
Confidence 886421 1 35667777888999999888765432 1234567676664 776654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.5e-08 Score=90.56 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=86.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..++.+++. +..+++++|+++ ++..+++|+.+++. . .+.+...|...... ...+.||
T Consensus 250 ~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--~-~v~~~~~D~~~~~~--~~~~~fD 322 (444)
T PRK14902 250 GGD--TVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--T-NIETKALDARKVHE--KFAEKFD 322 (444)
T ss_pred CCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--C-eEEEEeCCcccccc--hhcccCC
Confidence 556 8999999999999988875 345999999998 57788888877652 2 26676666544321 1125799
Q ss_pred EEEEcccCCCcc---------------c-------HHHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc--Cce
Q 026858 142 LVIAADVVYIEE---------------S-------AAQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE--VFL 196 (232)
Q Consensus 142 ~Ii~~~~~~~~~---------------~-------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~--~f~ 196 (232)
+|++..+..... + ...++..+.++|+|||++++++..-.+.. ...+...++. .|.
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~ 402 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFE 402 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcE
Confidence 999865533211 1 24578899999999999998754443322 2233333443 476
Q ss_pred EEEec
Q 026858 197 IEKVP 201 (232)
Q Consensus 197 ~~~~~ 201 (232)
...+.
T Consensus 403 ~~~~~ 407 (444)
T PRK14902 403 LVPLQ 407 (444)
T ss_pred Eeccc
Confidence 65543
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=83.94 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=78.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. ..++|+++|+++ .+..+++|+++++. ..+.+...|..... ...+.||
T Consensus 71 ~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v~~~~~D~~~~~---~~~~~fD 142 (264)
T TIGR00446 71 PPE--RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNVAVTNFDGRVFG---AAVPKFD 142 (264)
T ss_pred CcC--EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEecCCHHHhh---hhccCCC
Confidence 667 9999999999999888765 234899999998 57788888887752 23555555543221 1234699
Q ss_pred EEEEcccCCCcc----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 142 LVIAADVVYIEE----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 142 ~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
.|++..+..... ....+++.+.++|+|||+++.++....+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 999865543211 12458888999999999999887666554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=8e-09 Score=83.58 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=103.9
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHH-HHH-hcC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKH-NLK-RNK 113 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~-n~~-~~~ 113 (232)
...|.+|+... . ..++. +||..|||.|.-...+|..|. +|+|+|+|+ +++.+.+ +.. ...
T Consensus 23 ~p~L~~~~~~l-~-------------~~~~~--rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~ 85 (218)
T PF05724_consen 23 NPALVEYLDSL-A-------------LKPGG--RVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTV 85 (218)
T ss_dssp THHHHHHHHHH-T-------------TSTSE--EEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEEC
T ss_pred CHHHHHHHHhc-C-------------CCCCC--eEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCc
Confidence 56677777762 2 23556 899999999999999999999 999999999 4554422 111 111
Q ss_pred CCC-------CCceEEEEeecCCCcccccCCCCccEEEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEEeec-----
Q 026858 114 PVL-------NKSLKTSVLYWNNQDQINALKPPFDLVIAADVV--YIEESAAQLVRAMEALVADDGVVLLGYQLR----- 179 (232)
Q Consensus 114 ~~~-------~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r----- 179 (232)
... ..+|.+...|+-.... ...++||+|+=..++ ..++.++...+.+.++|+|||.+++.....
T Consensus 86 ~~~~~~~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~ 163 (218)
T PF05724_consen 86 TSVGGFKRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM 163 (218)
T ss_dssp TTCTTEEEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS
T ss_pred ccccceeeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC
Confidence 111 2345666666544321 112479999965555 478899999999999999999954432111
Q ss_pred -C---hhHHHHHHHHHhcCceEEEecCCCCCCC--------CCCCceEEEEEEec
Q 026858 180 -S---PEAHKLFWEMCAEVFLIEKVPHEDLHPD--------YGYEETDVYILRKK 222 (232)
Q Consensus 180 -~---~~~~~~~~~~~~~~f~~~~~~~~~~~~~--------~~~~~~~l~~~~~~ 222 (232)
. .-..+.+.+++..+|+++.+........ -..-.-++|+++|+
T Consensus 164 ~GPPf~v~~~ev~~l~~~~f~i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 218 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFGPGFEIEELEEEDSIEEEPRFKSWGLSRFREKVYVLRRK 218 (218)
T ss_dssp SSSS----HHHHHHHHTTTEEEEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE-
T ss_pred CCcCCCCCHHHHHHHhcCCcEEEEEecccccccccchhhcCcCceeEEEEEEEcC
Confidence 1 1335777788888999888765432221 11223457777664
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=90.38 Aligned_cols=128 Identities=19% Similarity=0.163 Sum_probs=83.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..++... ..+++++|.++ ++..+++|+..++.. +.+...|....... ...++||.
T Consensus 244 ~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~----~~~~~~D~~~~~~~-~~~~~fD~ 316 (427)
T PRK10901 244 NGE--RVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK----ATVIVGDARDPAQW-WDGQPFDR 316 (427)
T ss_pred CCC--EEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC----eEEEEcCcccchhh-cccCCCCE
Confidence 567 99999999999999888763 24999999998 577888888776522 35555554432210 11357999
Q ss_pred EEEcccCCCc---------------c-------cHHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHHHhc--CceE
Q 026858 143 VIAADVVYIE---------------E-------SAAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEMCAE--VFLI 197 (232)
Q Consensus 143 Ii~~~~~~~~---------------~-------~~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~~~~--~f~~ 197 (232)
|++..+.... . ....++..+.++|+|||++++++..-.+ +....+...+++ +|.+
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~ 396 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAEL 396 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEE
Confidence 9986654321 1 1246889999999999999987643322 223333344432 5654
Q ss_pred EE
Q 026858 198 EK 199 (232)
Q Consensus 198 ~~ 199 (232)
..
T Consensus 397 ~~ 398 (427)
T PRK10901 397 LD 398 (427)
T ss_pred ec
Confidence 43
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=88.69 Aligned_cols=108 Identities=15% Similarity=0.104 Sum_probs=76.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. +..+++++|+++ ++..+++|+...+. ..+.+...|..... ...+||
T Consensus 250 ~g~--~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~v~~~~~Da~~~~----~~~~fD 320 (445)
T PRK14904 250 PGS--TVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---TIIETIEGDARSFS----PEEQPD 320 (445)
T ss_pred CCC--EEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---CeEEEEeCcccccc----cCCCCC
Confidence 567 9999999999999888764 234899999998 57778888877652 23566666554332 235799
Q ss_pred EEEEcccCCCc---------------c-------cHHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 142 LVIAADVVYIE---------------E-------SAAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 142 ~Ii~~~~~~~~---------------~-------~~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
.|++..+.... . ....++..+.++|+|||++++++..-.+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 99974332110 1 1235889999999999999998765544
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-09 Score=86.21 Aligned_cols=121 Identities=11% Similarity=0.150 Sum_probs=79.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|.++..+++. +..+++++|+++. +..++++..... ...++.+...|..... ....++||+|++.
T Consensus 69 ~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l--~~~~~~yD~I~~D- 143 (262)
T PRK04457 69 HILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYI--AVHRHSTDVILVD- 143 (262)
T ss_pred EEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHH--HhCCCCCCEEEEe-
Confidence 8999999999999888765 4448999999994 555555543322 2245666665543221 1123579999974
Q ss_pred cCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 148 VVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 148 ~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
.+.... ....+++.+.++|+|||.+++....+.+ ....+.+.++.-|.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 322111 2368999999999999999986544443 24555666665563
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-08 Score=80.60 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=80.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..+++ +|||.|.|+|.++..+|+. +.++|+..|+.+ .++.+++|+..-. +.+.+.....|...... ...
T Consensus 92 i~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~----~~~ 163 (256)
T COG2519 92 ISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGID----EED 163 (256)
T ss_pred CCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEecccccccc----ccc
Confidence 46889 9999999999999999975 446999999998 4778888887753 43446666666655442 237
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
||.|++ +..+.-.++++++++|+|||.+.+..+.-
T Consensus 164 vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 164 VDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 999997 33566778999999999999988876443
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-10 Score=92.44 Aligned_cols=141 Identities=20% Similarity=0.318 Sum_probs=95.1
Q ss_pred CCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HH
Q 026858 25 GSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MP 103 (232)
Q Consensus 25 ~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~ 103 (232)
+.+..|.++|+|+..|..++..... . -..+.++ +|||+|||+|+.++.+...++..+.+.|.|.. ++
T Consensus 86 ~vyEGg~k~wecS~dl~~~l~~e~~-~---------~~~~~~k--~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 86 GVYEGGLKLWECSVDLLPYLKEEIG-A---------QMSFSGK--RVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ceeecceEEeecHHHHHHHHHHHhh-h---------heEecCc--eeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 4678899999999999999996530 0 0156889 99999999999999999988669999999863 31
Q ss_pred -HHHHHHHhcC------CCCCCceEEEEe---ecCCCcccccCCCCccEEEEcccCCCcccHHHH-HHHHHHhhCCCcEE
Q 026858 104 -ALKHNLKRNK------PVLNKSLKTSVL---YWNNQDQINALKPPFDLVIAADVVYIEESAAQL-VRAMEALVADDGVV 172 (232)
Q Consensus 104 -~~~~n~~~~~------~~~~~~i~~~~~---d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~-l~~l~~~l~pgG~l 172 (232)
....|...+. .....-.....- ||..... ...+||+|.++..+|.....+.+ ..+...+++++|.+
T Consensus 154 ~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~ 230 (282)
T KOG2920|consen 154 LVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVF 230 (282)
T ss_pred eecccceecchhhhhhhhhcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchh
Confidence 2222222111 000000111111 3311110 11279999999999998888877 66777788999999
Q ss_pred EEEEeecC
Q 026858 173 LLGYQLRS 180 (232)
Q Consensus 173 ~i~~~~r~ 180 (232)
+++.+..+
T Consensus 231 ~~aAK~~y 238 (282)
T KOG2920|consen 231 YVAAKKLY 238 (282)
T ss_pred hhhhHhhc
Confidence 98875554
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-08 Score=88.86 Aligned_cols=111 Identities=17% Similarity=0.124 Sum_probs=74.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..+++. +..+++++|+++ .+..++.|+++.+.. ..+.....|....... ...++||.
T Consensus 238 ~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~--~~v~~~~~d~~~~~~~-~~~~~fD~ 312 (426)
T TIGR00563 238 NEE--TILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT--IKAETKDGDGRGPSQW-AENEQFDR 312 (426)
T ss_pred CCC--eEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEecccccccccc-ccccccCE
Confidence 567 9999999999999888875 434999999998 577888888876522 1222233332211110 12357999
Q ss_pred EEEcccCCCc------cc----------------HHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE------ES----------------AAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~------~~----------------~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++..+.... .+ ...++.++.++|+|||++++++-.-.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9974332211 11 35788999999999999999865443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.7e-08 Score=83.13 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=83.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-ccc------------
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INA------------ 135 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~------------ 135 (232)
+|||++||+|.+++.+++.. .+|+++|.++ ++..+++|+..|+. .++.+...|+..... ...
T Consensus 209 ~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~---~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGI---DNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred eEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 79999999999999888764 4999999998 68888899888863 246777777644221 100
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
...+||+|++.++ + ....+.+++.+.+ |++.+++++.... ....+..+. ++|+++.+....
T Consensus 285 ~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~t--larDl~~L~-~gY~l~~v~~~D 345 (362)
T PRK05031 285 KSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPET--LCENLETLS-QTHKVERFALFD 345 (362)
T ss_pred cCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHHH--HHHHHHHHc-CCcEEEEEEEcc
Confidence 0125899998665 4 3445666666655 7888888875422 123333333 489888886544
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-08 Score=89.06 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=85.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. +..+|+++|+++ .+..+++|+.+.+ + ..+.+...|...... ...++||
T Consensus 237 ~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g--~-~~v~~~~~Da~~l~~--~~~~~fD 309 (431)
T PRK14903 237 PGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK--L-SSIEIKIADAERLTE--YVQDTFD 309 (431)
T ss_pred CCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CeEEEEECchhhhhh--hhhccCC
Confidence 667 9999999999999888875 234999999998 5778888887765 2 235666666543221 1245799
Q ss_pred EEEEcccCCCcc----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHH-HHHh--cCce
Q 026858 142 LVIAADVVYIEE----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW-EMCA--EVFL 196 (232)
Q Consensus 142 ~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~-~~~~--~~f~ 196 (232)
.|++..+..... ....++..+.++|+|||.+++++-.-.+...+... ..+. .+|.
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~ 389 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAE 389 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence 999855442111 12566888999999999999987655543333333 3333 2565
Q ss_pred EEE
Q 026858 197 IEK 199 (232)
Q Consensus 197 ~~~ 199 (232)
...
T Consensus 390 ~~~ 392 (431)
T PRK14903 390 VID 392 (431)
T ss_pred Eec
Confidence 444
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-08 Score=85.35 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=68.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|..+..+++.. ..+|+++|.++ ++..+++++..++. .++.+...|...... ..+.
T Consensus 78 i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~---~nV~~i~gD~~~~~~---~~~~ 149 (322)
T PRK13943 78 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI---ENVIFVCGDGYYGVP---EFAP 149 (322)
T ss_pred CCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCChhhccc---ccCC
Confidence 34667 99999999999999888762 23699999998 46667777766542 235555555432221 1246
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++...+. .....+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVD------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchH------HhHHHHHHhcCCCCEEEEEe
Confidence 99999864332 23445678999999988854
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-08 Score=84.80 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=78.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+||+||||+|.++..+++. +..+|+++|+++. ++.+++........ -..++.+...|...... ...++||+|++
T Consensus 79 ~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~ 156 (283)
T PRK00811 79 RVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA--ETENSFDVIIV 156 (283)
T ss_pred EEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh--hCCCcccEEEE
Confidence 8999999999999888776 5669999999994 55666555432111 13456666665433221 12457999998
Q ss_pred cccC-CCcc---cHHHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCce
Q 026858 146 ADVV-YIEE---SAAQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 146 ~~~~-~~~~---~~~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~ 196 (232)
..+- +... ....+++.+++.|+|||.+++.... ..+.......+.++.-|.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP 213 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence 4221 1111 1266788999999999998874321 122333444455555453
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-09 Score=84.83 Aligned_cols=111 Identities=19% Similarity=0.316 Sum_probs=75.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD 141 (232)
..+. +||||.||||.+|+.+...|+.+|+++|.++ ++..+++|++..+ ...++.....|...... ......+||
T Consensus 41 ~~g~--~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 41 LEGA--RVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp HTT---EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred cCCC--eEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHHHhhcccCCCce
Confidence 3677 9999999999999999999999999999998 5778888887665 22345555554322211 111246799
Q ss_pred EEEEcccCCCccc-HHHHHHHHH--HhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEES-AAQLVRAME--ALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~-~~~~l~~l~--~~l~pgG~l~i~~~~r 179 (232)
+|++ |+.|.... ...++..+. .+|+++|.+++-...+
T Consensus 117 iIfl-DPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFL-DPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE---STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEE-CCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 9997 55565555 488888887 6889999888766544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-08 Score=78.75 Aligned_cols=111 Identities=15% Similarity=0.352 Sum_probs=72.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCC---CC--------------------
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPV---LN-------------------- 117 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~---~~-------------------- 117 (232)
.+..+ .+|||||.+|.+++.+|+. ++..++|+|+++. +..+++++..-... +.
T Consensus 56 ~f~~~--~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 56 WFEPK--QALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccCcc--eeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 34556 9999999999999999987 8889999999996 55666665321100 00
Q ss_pred ---------CceEEEEeec--CCCcccccCCCCccEEEEcccCC------CcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 118 ---------KSLKTSVLYW--NNQDQINALKPPFDLVIAADVVY------IEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 118 ---------~~i~~~~~d~--~~~~~~~~~~~~fD~Ii~~~~~~------~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.++.+...+. ...+-+......||+|+|-.+.. +.+.+..+++.+.++|.|||++++-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000100000 00000011234699999977663 3456889999999999999999985
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.2e-08 Score=84.29 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=56.1
Q ss_pred CCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEe-ecCCCcc-cccCCCCcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVL-YWNNQDQ-INALKPPFD 141 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~-d~~~~~~-~~~~~~~fD 141 (232)
..+|||||||+|.+...++.. +. +++++|+++ ++..++.|+..| . +..++.+... +...... .....+.||
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~-~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGW-RFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCC-EEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceE
Confidence 349999999999877666543 55 999999999 588999999988 4 4445555321 1111110 001235799
Q ss_pred EEEEcccCCCcc
Q 026858 142 LVIAADVVYIEE 153 (232)
Q Consensus 142 ~Ii~~~~~~~~~ 153 (232)
+|+|++++|...
T Consensus 192 livcNPPf~~s~ 203 (321)
T PRK11727 192 ATLCNPPFHASA 203 (321)
T ss_pred EEEeCCCCcCcc
Confidence 999999988543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=81.25 Aligned_cols=90 Identities=12% Similarity=0.112 Sum_probs=61.0
Q ss_pred cEEEeCccccHHHHHHHHh----CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL----GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|||+|||+|.+++.+++. +..+++++|+++. +..+++|.. .+.+...|+.... ..++||+||
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------~~~~~~~D~~~~~----~~~~FDlII 119 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------EATWINADALTTE----FDTLFDMAI 119 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------CCEEEEcchhccc----ccCCccEEE
Confidence 9999999999999988764 2338999999994 555555431 1345555543322 245899999
Q ss_pred EcccCCCcc------------cHHHHHHHHHHhhCCCcE
Q 026858 145 AADVVYIEE------------SAAQLVRAMEALVADDGV 171 (232)
Q Consensus 145 ~~~~~~~~~------------~~~~~l~~l~~~l~pgG~ 171 (232)
++++++... ....++....+++++|+.
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999886221 144577778886666554
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=81.79 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=75.7
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHHHHHHHHhc
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPALKHNLKRN 112 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~~~~n~~~~ 112 (232)
++.-+...+.+.+. ..++. +|||||||+|..+-.++.. + ..+|+++|.++. ...+++++...
T Consensus 56 s~P~~~a~~l~~L~-------------l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~ 120 (209)
T PF01135_consen 56 SAPSMVARMLEALD-------------LKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL 120 (209)
T ss_dssp --HHHHHHHHHHTT-------------C-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-------------cCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh
Confidence 34445555555555 56888 9999999999999888876 3 236999999985 66777777766
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+.. ++.+...|...... ..++||.|++..... .+ -..+.+.|++||++++-..
T Consensus 121 ~~~---nv~~~~gdg~~g~~---~~apfD~I~v~~a~~---~i---p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 121 GID---NVEVVVGDGSEGWP---EEAPFDRIIVTAAVP---EI---PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTH---SEEEEES-GGGTTG---GG-SEEEEEESSBBS---S-----HHHHHTEEEEEEEEEEES
T ss_pred ccC---ceeEEEcchhhccc---cCCCcCEEEEeeccc---hH---HHHHHHhcCCCcEEEEEEc
Confidence 532 46777766443332 235799999976553 22 2346778999999998653
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-07 Score=80.82 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=83.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-cc---C--------
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NA---L-------- 136 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~---~-------- 136 (232)
+|||+|||+|.+++.+++.. .+|+++|+++ ++..+++|+..|+. .++.+...|+...... .. .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNI---DNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 79999999999999888875 4999999998 67888899888863 2367777776442210 00 0
Q ss_pred -CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 137 -KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 137 -~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
...||+|++.++ . ....+.+++.+.+ |++.+++++....- ......+. ++|+++.+.-..
T Consensus 276 ~~~~~d~v~lDPP-R-~G~~~~~l~~l~~---~~~ivYvsC~p~tl--aRDl~~L~-~~Y~l~~v~~~D 336 (353)
T TIGR02143 276 KSYNCSTIFVDPP-R-AGLDPDTCKLVQA---YERILYISCNPETL--KANLEQLS-ETHRVERFALFD 336 (353)
T ss_pred ccCCCCEEEECCC-C-CCCcHHHHHHHHc---CCcEEEEEcCHHHH--HHHHHHHh-cCcEEEEEEEcc
Confidence 113899998665 3 3445666666654 78899988754431 22333333 448888876544
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=76.55 Aligned_cols=127 Identities=19% Similarity=0.211 Sum_probs=82.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+. ++||+.+|||.+++.++..|+.+++++|.+. +...+++|++..+ +.........|...........+.||+
T Consensus 42 i~g~--~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 42 IEGA--RVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred cCCC--EEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecHHHHHHhcCCCCcccE
Confidence 4677 9999999999999999999999999999998 5778888877655 223445555554421111111225999
Q ss_pred EEEcccCCCcccHHHHHHHH----HHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 143 VIAADVVYIEESAAQLVRAM----EALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l----~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
|++ |+.|....++....-+ ...|+|+|.+++-..... -+.....+|...+..
T Consensus 118 Vfl-DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~------~~~~~~~~~~~~r~k 173 (187)
T COG0742 118 VFL-DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKDV------ELPELPANFELHREK 173 (187)
T ss_pred EEe-CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc------CccccCCCeEEEEEe
Confidence 997 5555555553333332 356899999887654332 111233466665544
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-08 Score=77.73 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=62.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.++..++......++++|+++. +..++. ++ +.+...+...... ...+++||+|
T Consensus 13 ~~~--~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~------~~~~~~d~~~~l~-~~~~~sfD~V 79 (194)
T TIGR02081 13 PGS--RVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG------VNVIQGDLDEGLE-AFPDKSFDYV 79 (194)
T ss_pred CCC--EEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC------CeEEEEEhhhccc-ccCCCCcCEE
Confidence 456 89999999999998887653337899999983 333221 11 2455555543211 1224679999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
+++.++++..+...+++++.+.+++
T Consensus 80 i~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 9999998888888888888776543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.2e-08 Score=76.12 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=81.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c----ccCCCCccE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I----NALKPPFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~----~~~~~~fD~ 142 (232)
+|||||||||.-+.++|+. ..-+..-+|.++. ...+...+..... .+......+|+..... . ....+.||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~--~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGL--PNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCC--cccCCCeEeecCCCCCccccccccCCCCcce
Confidence 5999999999999888876 3337777888874 3444444443331 1112334556555421 1 113457999
Q ss_pred EEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC-----hhHHHHHHHHHh
Q 026858 143 VIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRS-----PEAHKLFWEMCA 192 (232)
Q Consensus 143 Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-----~~~~~~~~~~~~ 192 (232)
|++.+++| .++..+.+++...++|++||.+++-.+... +..-..|-+.++
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr 162 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLR 162 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHh
Confidence 99999997 667889999999999999999998643222 244566666555
|
The function of this family is unknown. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8e-08 Score=78.94 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=81.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..||+ +|||-|.|+|.++..+++. +.++|+..|..+ ....+++|++..+ +...+.+...|+............
T Consensus 38 i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 38 IRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEGFDEELESD 113 (247)
T ss_dssp --TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG--STT-TTS
T ss_pred CCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceecccccccccCc
Confidence 56899 9999999999999999976 456999999998 4788888988876 556788888888643211122357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhh-CCCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALV-ADDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l-~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
+|.|++ |... .-.++..+.+.| ++||++++..+.-. -.+...+.+. .+|.
T Consensus 114 ~DavfL-Dlp~----Pw~~i~~~~~~L~~~gG~i~~fsP~ie--Qv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 114 FDAVFL-DLPD----PWEAIPHAKRALKKPGGRICCFSPCIE--QVQKTVEALREHGFT 165 (247)
T ss_dssp EEEEEE-ESSS----GGGGHHHHHHHE-EEEEEEEEEESSHH--HHHHHHHHHHHTTEE
T ss_pred ccEEEE-eCCC----HHHHHHHHHHHHhcCCceEEEECCCHH--HHHHHHHHHHHCCCe
Confidence 999997 3333 334677788999 89999887764332 2333344444 3664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-08 Score=87.73 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-----CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-----LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-----~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
.++ .|||+|||+|.++..+++.+ +.+|++++.|+. ....+..+..|+ +.++|++...|...... +.
T Consensus 186 ~~~--vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~l----pe 257 (448)
T PF05185_consen 186 KDK--VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVEL----PE 257 (448)
T ss_dssp TT---EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCH----SS
T ss_pred cce--EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCC----CC
Confidence 356 89999999999998776653 569999999984 434444335554 56778999988877653 45
Q ss_pred CccEEEE--cccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 139 PFDLVIA--ADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 139 ~fD~Ii~--~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
+.|+||+ -+.+...+..+..+....+.|+|+|+++
T Consensus 258 kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 8999996 2233455677778889999999998843
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.1e-08 Score=79.67 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=72.7
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|+|||+|+|..+..+++. +.-+++..|...+++.+.. ..++.+...|+-.. .+. +|+|++..+
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~---------~~rv~~~~gd~f~~-----~P~-~D~~~l~~v 167 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE---------ADRVEFVPGDFFDP-----LPV-ADVYLLRHV 167 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH---------TTTEEEEES-TTTC-----CSS-ESEEEEESS
T ss_pred EEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc---------ccccccccccHHhh-----hcc-ccceeeehh
Confidence 8999999999999888876 3339999999876554444 35689999987622 233 999999999
Q ss_pred CCC--cccHHHHHHHHHHhhCCC--cEEEEEEee
Q 026858 149 VYI--EESAAQLVRAMEALVADD--GVVLLGYQL 178 (232)
Q Consensus 149 ~~~--~~~~~~~l~~l~~~l~pg--G~l~i~~~~ 178 (232)
+|. .++...+++++++.|+|| |+|+|.+..
T Consensus 168 Lh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 974 456788999999999999 999998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-08 Score=78.63 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=77.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEE-eecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSV-LYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~f 140 (232)
..+ +|||||++.|..++.+|.. . ..+++.+|.++. ...+++|.++.+ +..++.... +|+...... ...++|
T Consensus 59 ~~k--~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~-~~~~~f 133 (219)
T COG4122 59 GPK--RILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDVLSR-LLDGSF 133 (219)
T ss_pred CCc--eEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHh-ccCCCc
Confidence 556 9999999999999999876 2 458999999994 678888888776 444455555 343322211 235789
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|+|+.-. .....+.+++.+.++|+|||.+++-
T Consensus 134 DliFIDa---dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 134 DLVFIDA---DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 9999742 4456688999999999999999884
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-08 Score=81.88 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=65.2
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
.++|+|||+|..++.+|.. +.+|+++|+|+.|...+..-..+. ...+. .+.-....++.+.+.+.|+|++..+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~-----~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPS-----TMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCc-----cccccccccccCCCcceeeehhhhh
Confidence 7999999999888888887 569999999995443332111111 11111 1111111223334678999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCc-EEEE
Q 026858 149 VYIEESAAQLVRAMEALVADDG-VVLL 174 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG-~l~i 174 (232)
+|+. +++.+.+.++++|++.| .+.+
T Consensus 110 ~HWF-dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 110 VHWF-DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred HHhh-chHHHHHHHHHHcCCCCCEEEE
Confidence 9876 56889999999998766 5555
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.2e-08 Score=80.81 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=77.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~ 138 (232)
+.+ +|||||+++|..++.+|.. ..++++.+|.++ ....+++|++..+ +.+++.+...+...... + ....+
T Consensus 118 ~ak--~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 118 GAE--RCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred CCC--eEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 556 9999999999999999875 234899999998 4778888888776 44567777766543221 1 11135
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.||+|+... ........++.+.++|+|||.+++-
T Consensus 194 ~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 799999853 3456788899999999999998874
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-08 Score=79.72 Aligned_cols=114 Identities=11% Similarity=0.121 Sum_probs=72.1
Q ss_pred eeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHH-HHHHH
Q 026858 32 SVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPA-LKHNL 109 (232)
Q Consensus 32 ~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~-~~~n~ 109 (232)
-++.++.-|...+..... ...++ +|||+|||||.++..+++.|+.+|+++|+++ ++.. .+.+.
T Consensus 55 ~vsr~~~kL~~~l~~~~~-------------~~~~~--~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~ 119 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNI-------------DVKNK--IVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE 119 (228)
T ss_pred hhhhhHHHHHHHHHhcCC-------------CCCCC--EEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC
Confidence 456677778888876654 55778 9999999999999999999888999999998 4443 22211
Q ss_pred HhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 110 KRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 110 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+... .-..++. ..+|.... ..-..+|+++++- ...+..+.++|++ |.+++.
T Consensus 120 ~v~~-~~~~ni~--~~~~~~~~---~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 120 RVKV-LERTNIR--YVTPADIF---PDFATFDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CeeE-eecCCcc--cCCHhHcC---CCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 1000 0001111 22222221 0113577777643 3358889999999 777665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.7e-07 Score=71.73 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=83.2
Q ss_pred eeechHHH--HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHH
Q 026858 32 SVWPCSLV--LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNL 109 (232)
Q Consensus 32 ~~W~~~~~--L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~ 109 (232)
+.||.-.+ +.+|+...+ +.. .|-|+|||-+.++..+. .+. +|...|+-..
T Consensus 53 ~~WP~nPvd~iI~~l~~~~----------------~~~--viaD~GCGdA~la~~~~-~~~-~V~SfDLva~-------- 104 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKRP----------------KSL--VIADFGCGDAKLAKAVP-NKH-KVHSFDLVAP-------- 104 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-----------------TTS---EEEES-TT-HHHHH---S----EEEEESS-S--------
T ss_pred hcCCCCcHHHHHHHHHhcC----------------CCE--EEEECCCchHHHHHhcc-cCc-eEEEeeccCC--------
Confidence 46886665 566665432 234 89999999998874432 233 6888886440
Q ss_pred HhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHH
Q 026858 110 KRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE 189 (232)
Q Consensus 110 ~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~ 189 (232)
+..|..+ |..+. +-.+++.|++|.+-.++. .++..++.+..|+|+|||.++|+.-.........|.+
T Consensus 105 -------n~~Vtac--dia~v---PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~ 171 (219)
T PF05148_consen 105 -------NPRVTAC--DIANV---PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK 171 (219)
T ss_dssp -------STTEEES---TTS----S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred -------CCCEEEe--cCccC---cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence 1112222 22221 223568999999888876 5889999999999999999999986555556788888
Q ss_pred HHhc-CceEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 190 MCAE-VFLIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 190 ~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
.+.. ||....-.. ...=+.++.+++..
T Consensus 172 ~~~~~GF~~~~~d~-------~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 172 ALKKLGFKLKSKDE-------SNKHFVLFEFKKIR 199 (219)
T ss_dssp HHHCTTEEEEEEE---------STTEEEEEEEE-S
T ss_pred HHHHCCCeEEeccc-------CCCeEEEEEEEEcC
Confidence 8886 998876532 12235667766654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.3e-08 Score=82.63 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=80.2
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
-|--+.++..|+..... ..++. +|||||||-|.-.......+..+++|+|++. .+..++.....
T Consensus 43 NwvKs~LI~~~~~~~~~-------------~~~~~--~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVKQ-------------NRPGL--TVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp HHHHHHHHHHHCHCCCC-------------TTTT---EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc-------------cCCCC--eEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 36667777777765433 23556 9999999998866666666777999999998 46666554421
Q ss_pred cCCC-------CCCceEEEEeecCCCcc---cccCCCCccEEEEcccCC----CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 112 NKPV-------LNKSLKTSVLYWNNQDQ---INALKPPFDLVIAADVVY----IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 112 ~~~~-------~~~~i~~~~~d~~~~~~---~~~~~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.... ..-...+...|.-...- .......||+|-+-.++| ..+....+++++.+.|+|||.++.+.+
T Consensus 108 ~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 108 LKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1100 01122333333322210 111124799999988775 345678899999999999999999885
Q ss_pred e
Q 026858 178 L 178 (232)
Q Consensus 178 ~ 178 (232)
.
T Consensus 188 d 188 (331)
T PF03291_consen 188 D 188 (331)
T ss_dssp -
T ss_pred C
Confidence 3
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=79.00 Aligned_cols=104 Identities=14% Similarity=0.190 Sum_probs=76.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~ 138 (232)
..+ +||||||++|..++.+|+. ..++++.+|.++. ...++++++..+ +..++.+...+...... + ....+
T Consensus 45 ~~k--~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 45 RPK--RVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp T-S--EEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred CCc--eEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhccCCC
Confidence 446 9999999999999999975 2349999999984 667777777765 45678887776543211 1 11135
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.||+|+.-. ........++.+.++|+|||.+++-
T Consensus 121 ~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 121 QFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp SEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEc
Confidence 799999853 4456778888999999999999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=78.85 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=67.3
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||+||||+|.++..+++.. ..+++++|+++. +..++++........ ..++.+...|.... .....++||+|++.
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~--l~~~~~~yDvIi~D 152 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF--LADTENTFDVIIVD 152 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH--HHhCCCCccEEEEe
Confidence 89999999999887777663 568999999984 556655543321111 12344444322111 11124589999985
Q ss_pred ccC--CCccc--HHHHHHHHHHhhCCCcEEEEEE
Q 026858 147 DVV--YIEES--AAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 147 ~~~--~~~~~--~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
... ..... ...+++.+.+.|+|||.+++..
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 432 11112 4677899999999999999863
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-07 Score=83.26 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=79.0
Q ss_pred cEEEeCccccHHHHHHHHhCC-CcEEEEcchhH-HHHHHHHHHh---cCCCC-CCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLLGL-ADIVLTDISPV-MPALKHNLKR---NKPVL-NKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~-~~v~~~D~s~~-~~~~~~n~~~---~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+|||||||+|..+..+++.+. .+++++|+++. ++.++++... +.... .+++++...|..... ....++||+|
T Consensus 300 rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l--~~~~~~fDvI 377 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL--RKLAEKFDVI 377 (521)
T ss_pred eEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH--HhCCCCCCEE
Confidence 899999999999988887743 69999999994 5555553211 11111 245666665543221 1124589999
Q ss_pred EEcccCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhc-CceEEE
Q 026858 144 IAADVVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 144 i~~~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~-~f~~~~ 199 (232)
++..+..... .-..+++.+++.|+|||.+++..... .+.......+.+++ +|.+..
T Consensus 378 i~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 378 IVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred EEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEEE
Confidence 9864322111 12457889999999999998854222 22333445555555 574433
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-07 Score=75.17 Aligned_cols=136 Identities=14% Similarity=0.069 Sum_probs=94.1
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC
Q 026858 38 LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL 116 (232)
Q Consensus 38 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~ 116 (232)
..|++.+.+... -.+|. .|||=-||||...+.+...|+ +++|+|++. ++.-++.|+..-+..
T Consensus 183 P~lAR~mVNLa~-------------v~~G~--~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~- 245 (347)
T COG1041 183 PRLARAMVNLAR-------------VKRGE--LVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIE- 245 (347)
T ss_pred HHHHHHHHHHhc-------------cccCC--EeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcC-
Confidence 346666666555 56888 999999999999999999999 999999998 577888888765411
Q ss_pred CCceEEEEe-ecCCCcccccCCCCccEEEEcccCCCcc----------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHH
Q 026858 117 NKSLKTSVL-YWNNQDQINALKPPFDLVIAADVVYIEE----------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHK 185 (232)
Q Consensus 117 ~~~i~~~~~-d~~~~~~~~~~~~~fD~Ii~~~~~~~~~----------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~ 185 (232)
...+... |...-+ .....+|-|++ |+.|... ....+++.+.++|++||++.+..+...
T Consensus 246 --~~~~~~~~Da~~lp---l~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~----- 314 (347)
T COG1041 246 --DYPVLKVLDATNLP---LRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP----- 314 (347)
T ss_pred --ceeEEEecccccCC---CCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-----
Confidence 1222222 443333 22236999997 5555322 377888999999999999999886221
Q ss_pred HHHHHHhcCceEEEecC
Q 026858 186 LFWEMCAEVFLIEKVPH 202 (232)
Q Consensus 186 ~~~~~~~~~f~~~~~~~ 202 (232)
.-.....+|++...-.
T Consensus 315 -~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 315 -RHELEELGFKVLGRFT 330 (347)
T ss_pred -hhhHhhcCceEEEEEE
Confidence 2233345788766643
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.4e-07 Score=75.70 Aligned_cols=91 Identities=21% Similarity=0.328 Sum_probs=69.9
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV 149 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~ 149 (232)
++||||+|-|.++..++.. +.+|++++.|+.|....+ +++. . -....+|.+. ..+||+|.|.+++
T Consensus 97 ~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~--~kg~-~-----vl~~~~w~~~------~~~fDvIscLNvL 161 (265)
T PF05219_consen 97 SLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLS--KKGF-T-----VLDIDDWQQT------DFKFDVISCLNVL 161 (265)
T ss_pred ceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHH--hCCC-e-----EEehhhhhcc------CCceEEEeehhhh
Confidence 8999999999999999876 458999999996654433 1221 1 1122234322 3579999999999
Q ss_pred CCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 150 YIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 150 ~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
--......+++.+++.|+|+|+++++
T Consensus 162 DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 87888999999999999999999986
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-06 Score=73.34 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=57.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..++..+. +++++|+++ ++..++++..... ...++.+...|+.... ...||
T Consensus 34 ~~~~~--~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~-----~~~~d 103 (294)
T PTZ00338 34 IKPTD--TVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTE-----FPYFD 103 (294)
T ss_pred CCCcC--EEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhc-----ccccC
Confidence 44667 999999999999999988765 899999999 4566666665432 2245677777765432 23689
Q ss_pred EEEEcccCCC
Q 026858 142 LVIAADVVYI 151 (232)
Q Consensus 142 ~Ii~~~~~~~ 151 (232)
.|+++.+.+.
T Consensus 104 ~VvaNlPY~I 113 (294)
T PTZ00338 104 VCVANVPYQI 113 (294)
T ss_pred EEEecCCccc
Confidence 9997665553
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-06 Score=71.26 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=54.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..+++.+. +++++|+++. +..++.+... ..++.+...|+.... ...||
T Consensus 27 ~~~~~--~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~~-----~~~~d 93 (258)
T PRK14896 27 DTDGD--PVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKVD-----LPEFN 93 (258)
T ss_pred CCCcC--eEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccCC-----chhce
Confidence 34667 999999999999999998865 9999999984 4454444322 134677777665432 13489
Q ss_pred EEEEcccCCC
Q 026858 142 LVIAADVVYI 151 (232)
Q Consensus 142 ~Ii~~~~~~~ 151 (232)
.|+++.+++.
T Consensus 94 ~Vv~NlPy~i 103 (258)
T PRK14896 94 KVVSNLPYQI 103 (258)
T ss_pred EEEEcCCccc
Confidence 9998777553
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=71.94 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=52.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|.++..++..+. +++++|+++. +..++.+... .++.+...|+..... +. -.+|
T Consensus 40 ~~~~~--~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~~~-~~--~~~~ 107 (272)
T PRK00274 40 PQPGD--NVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKVDL-SE--LQPL 107 (272)
T ss_pred CCCcC--eEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcCCH-HH--cCcc
Confidence 34667 999999999999999998876 9999999994 4455443321 346777777655431 11 0158
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.|+++.+.+
T Consensus 108 ~vv~NlPY~ 116 (272)
T PRK00274 108 KVVANLPYN 116 (272)
T ss_pred eEEEeCCcc
Confidence 888876644
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=71.50 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=88.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C--CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G--LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~--~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.+.+++||||.||.|..-+-+... + ..+++..|+++. ++.-+.-++.++ +...+.+...|.-+...........
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~~~l~~l~p~P 210 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDRDSLAALDPAP 210 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCHhHhhccCCCC
Confidence 466789999999999977666543 2 359999999994 677777666665 5555688888876665555555678
Q ss_pred cEEEEcccCCC---cccHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 141 DLVIAADVVYI---EESAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 141 D~Ii~~~~~~~---~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
++++++..+.. ...+...+..+..++.|||.++......+|.
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 99999887742 2347778999999999999999998777764
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.2e-07 Score=65.68 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCC
Q 026858 39 VLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVL 116 (232)
Q Consensus 39 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~ 116 (232)
.+++|+.++.. ...+. +|||||||+|. ++..+++.|. +|+++|+++. ++.++. +.
T Consensus 3 ~i~~~l~~~~~-------------~~~~~--kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~----~~--- 59 (134)
T PRK04148 3 TIAEFIAENYE-------------KGKNK--KIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKK----LG--- 59 (134)
T ss_pred HHHHHHHHhcc-------------cccCC--EEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----hC---
Confidence 47788877665 33445 89999999996 8889998898 9999999993 333322 22
Q ss_pred CCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhC
Q 026858 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVA 167 (232)
Q Consensus 117 ~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~ 167 (232)
+.+...|+-+... ..-..+|+|.+..+ +.++...+..+++-+.
T Consensus 60 ---~~~v~dDlf~p~~--~~y~~a~liysirp---p~el~~~~~~la~~~~ 102 (134)
T PRK04148 60 ---LNAFVDDLFNPNL--EIYKNAKLIYSIRP---PRDLQPFILELAKKIN 102 (134)
T ss_pred ---CeEEECcCCCCCH--HHHhcCCEEEEeCC---CHHHHHHHHHHHHHcC
Confidence 2555666554432 11246899998643 3344444444444443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=73.73 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=78.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||+||||.|.+...+++. +..+++++|+++. ++.+++...... ..-..++.+...|...... ....++||+|++.
T Consensus 94 rVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-~~~~~~yDvIi~D 172 (308)
T PLN02366 94 KVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-NAPEGTYDAIIVD 172 (308)
T ss_pred eEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-hccCCCCCEEEEc
Confidence 8999999999999888877 4468999999994 556655443211 1113456666665322111 0013579999973
Q ss_pred ccCCC-cc---cHHHHHHHHHHhhCCCcEEEEEEe--ecChhHHHHHHHHHhcCc
Q 026858 147 DVVYI-EE---SAAQLVRAMEALVADDGVVLLGYQ--LRSPEAHKLFWEMCAEVF 195 (232)
Q Consensus 147 ~~~~~-~~---~~~~~l~~l~~~l~pgG~l~i~~~--~r~~~~~~~~~~~~~~~f 195 (232)
..-.. .. --..+++.+++.|+|||.++.... .........+.+.+..-|
T Consensus 173 ~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 173 SSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 22111 11 134678999999999999876321 222344455666666666
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-06 Score=71.34 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=81.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.|. +|||..||-|..++.+|+.+..+|+++|+|+ +...+.+|++.|. +...+.....|...... ..+.+|.|
T Consensus 188 ~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~--v~~~v~~i~gD~rev~~---~~~~aDrI 260 (341)
T COG2520 188 EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNK--VEGRVEPILGDAREVAP---ELGVADRI 260 (341)
T ss_pred CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcC--ccceeeEEeccHHHhhh---ccccCCEE
Confidence 577 9999999999999999999875699999999 6999999999998 44556777776554432 22679999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+++.+. ....++....+++++||.+.+-...+.
T Consensus 261 im~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 261 IMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred EeCCCC----cchhhHHHHHHHhhcCcEEEEEeccch
Confidence 997554 335566667777888888877654443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-07 Score=75.41 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=76.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
.++|||||-|.+...+...+..+++.+|.|.. ++.++.. +.+ .+....+ +.+++.++....++|+|+++-.
T Consensus 75 ~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp------~i~~~~~-v~DEE~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDP------SIETSYF-VGDEEFLDFKENSVDLIISSLS 146 (325)
T ss_pred ceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCC------ceEEEEE-ecchhcccccccchhhhhhhhh
Confidence 89999999999998888778889999999984 4444432 211 2233333 3334445556678999999999
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+||..+++..+..++..|||+|.++-+.
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHH
Confidence 9999999999999999999999988753
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.7e-07 Score=79.22 Aligned_cols=96 Identities=22% Similarity=0.267 Sum_probs=71.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||++||+|..++.++.. ++.+|+++|+++ +++.+++|++.|+.. .+.+...|..... .. .+.||+|++.
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~---~~~v~~~Da~~~l--~~-~~~fD~V~lD- 132 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE---NEKVFNKDANALL--HE-ERKFDVVDID- 132 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---ceEEEhhhHHHHH--hh-cCCCCEEEEC-
Confidence 8999999999999999865 656899999998 688999999988632 2344454442211 10 3469999984
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++ .....++....+.+++||.++++
T Consensus 133 P~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 133 PF---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 43 34466778877778999999997
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=77.97 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=66.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHH--H-hcC-CCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNL--K-RNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~--~-~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+||+||||+|.+...+.+. +..+++++|+++. ++.++... . .+. ..-.+++.+...|..... ....++||+|
T Consensus 153 rVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL--~~~~~~YDVI 230 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL--SSPSSLYDVI 230 (374)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH--HhcCCCccEE
Confidence 9999999999987777766 3459999999995 44444311 0 111 111345666555543321 1124579999
Q ss_pred EEcccCCCc------ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAADVVYIE------ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~~~~~~------~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.. .... ---..+++.+++.|+|||.+++..
T Consensus 231 IvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9752 2111 112568899999999999987754
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=8e-07 Score=68.53 Aligned_cols=83 Identities=10% Similarity=-0.108 Sum_probs=59.7
Q ss_pred EEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEE
Q 026858 94 VLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVV 172 (232)
Q Consensus 94 ~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l 172 (232)
+|+|+|+. +..++++..........++.+...|..+.+ ..+++||+|+++.++++..+...++++++++|+|||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 47999984 555443332211111234677777765433 34568999999999988889999999999999999999
Q ss_pred EEEEeec
Q 026858 173 LLGYQLR 179 (232)
Q Consensus 173 ~i~~~~r 179 (232)
++.+...
T Consensus 78 ~i~d~~~ 84 (160)
T PLN02232 78 SILDFNK 84 (160)
T ss_pred EEEECCC
Confidence 9987544
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-06 Score=68.82 Aligned_cols=143 Identities=19% Similarity=0.151 Sum_probs=86.4
Q ss_pred CCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC-ccE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP-FDL 142 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-fD~ 142 (232)
++ +++|||+|.|.+|+.+|.. .-.+++.+|... -+...+.....-+ + .++++.......... ... ||+
T Consensus 68 ~~--~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~--L-~nv~i~~~RaE~~~~----~~~~~D~ 138 (215)
T COG0357 68 AK--RVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG--L-ENVEIVHGRAEEFGQ----EKKQYDV 138 (215)
T ss_pred CC--EEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC--C-CCeEEehhhHhhccc----ccccCcE
Confidence 46 9999999999999999854 333799999875 3444443333322 1 224555554433331 123 999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
|.+-.+ ..+..+++.+..++++||.++...-....+........+. .++.+..+.....+.. ....++..+++
T Consensus 139 vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~~--~~~r~l~ii~~ 212 (215)
T COG0357 139 VTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPEL--DGERHLVIIRK 212 (215)
T ss_pred EEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCCC--CCceEEEEEec
Confidence 998643 5678899999999999998764322222122233333333 3566666654443332 44567777766
Q ss_pred cC
Q 026858 222 KK 223 (232)
Q Consensus 222 ~~ 223 (232)
++
T Consensus 213 ~k 214 (215)
T COG0357 213 RK 214 (215)
T ss_pred cC
Confidence 54
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=73.29 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=68.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. .|+|+.||.|..++.+|+. +...|+++|+++ +...+.+|++.|+ +...+.....|...... .+.||.
T Consensus 101 ~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~~D~~~~~~----~~~~dr 172 (200)
T PF02475_consen 101 PGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVINGDAREFLP----EGKFDR 172 (200)
T ss_dssp TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEES-GGG-------TT-EEE
T ss_pred cce--EEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEcCCHHHhcC----ccccCE
Confidence 667 9999999999999999983 344899999998 6899999999997 55677778887655442 467999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
|+++.+-.. ..++..+.+++++||.+.
T Consensus 173 vim~lp~~~----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPESS----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TSSG----GGGHHHHHHHEEEEEEEE
T ss_pred EEECChHHH----HHHHHHHHHHhcCCcEEE
Confidence 999765443 346667788888888764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=72.44 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=75.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-ccc---CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INA---LK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~---~~ 137 (232)
..+ +|||||+++|..++.+|+. .-++++.+|.++. ...++.++...+ +..+|.+...+...... +.. ..
T Consensus 79 ~ak--~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 79 NAK--NTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCC--EEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHHHHHHHhccccC
Confidence 446 9999999999999988875 2349999999984 566777777665 45677777765433211 100 13
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++||+|+.-. +.......++.+.++|+|||.+++-
T Consensus 155 ~~fD~iFiDa---dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 155 GTFDFIFVDA---DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CcccEEEecC---CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 5899999742 3455677888889999999998863
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=75.05 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=93.1
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV 115 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~ 115 (232)
+..|.++..+... ..++. ++||+=||.|.+++.+|.... +|+++++++ ++..+++|++.|+..
T Consensus 278 ~ekl~~~a~~~~~-------------~~~~~--~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~~NA~~n~i~ 341 (432)
T COG2265 278 AEKLYETALEWLE-------------LAGGE--RVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGID 341 (432)
T ss_pred HHHHHHHHHHHHh-------------hcCCC--EEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHHHHHHHcCCC
Confidence 3446666666655 45667 999999999999999997765 999999998 688999999999733
Q ss_pred CCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHH-HHhcC
Q 026858 116 LNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE-MCAEV 194 (232)
Q Consensus 116 ~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~-~~~~~ 194 (232)
+ +.+...+.............+|.|+..++=-. .-+.+++.+. .++|..++++++. |.+...-.. +...+
T Consensus 342 --N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~-~~~p~~IvYVSCN---P~TlaRDl~~L~~~g 412 (432)
T COG2265 342 --N-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLA-KLKPKRIVYVSCN---PATLARDLAILASTG 412 (432)
T ss_pred --c-EEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHH-hcCCCcEEEEeCC---HHHHHHHHHHHHhCC
Confidence 2 67777765443321111246899998544321 1123444443 3467778888884 333333344 44457
Q ss_pred ceEEEecC
Q 026858 195 FLIEKVPH 202 (232)
Q Consensus 195 f~~~~~~~ 202 (232)
+.++++..
T Consensus 413 y~i~~v~~ 420 (432)
T COG2265 413 YEIERVQP 420 (432)
T ss_pred eEEEEEEE
Confidence 77776643
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.4e-07 Score=74.95 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=78.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC---CCCCCceEEEEeecCCCc---ccccC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK---PVLNKSLKTSVLYWNNQD---QINAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~---~~~~~~i~~~~~d~~~~~---~~~~~ 136 (232)
.++. .+++||||-|--.+..-+.|++.++++|+.++ +..+++..+... ....-.+.+...|..... ..+..
T Consensus 116 ~~~~--~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 116 KRGD--DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred cccc--ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 3667 89999999998877777888889999999985 665554332211 111112345555543332 12222
Q ss_pred CCCccEEEEcccCC----CcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 137 KPPFDLVIAADVVY----IEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+.+||+|=|-.++| ..+...-++.++.++|+|||.++-..+...
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 34599999888775 235678889999999999999998775443
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=68.96 Aligned_cols=124 Identities=9% Similarity=-0.006 Sum_probs=78.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+||||||.|...+.+|.. +-..++|+|+.. .+..+...+.... ..++.+...|.......-..+++.|-|....
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---LKNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---TSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---ccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence 8999999999999888876 334999999997 4555555554443 2346777777655332122346899998865
Q ss_pred cCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc---CceEE
Q 026858 148 VVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE---VFLIE 198 (232)
Q Consensus 148 ~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~---~f~~~ 198 (232)
+==++. .-+.++..+.++|+|||.+.+.+....+ .+...+.+.. .|...
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y--~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY--AEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH--HHHHHHHHHHHSTTEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH--HHHHHHHHHhcCcCeEEc
Confidence 543333 3578999999999999999998755432 2333333333 56554
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.8e-06 Score=67.74 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=49.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc-
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD- 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD- 141 (232)
.++. +|||+|||+|.++..+++.+. +++++|+++. +..++.+... ..++.+...|+..... ..||
T Consensus 28 ~~~~--~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~-----~~~d~ 94 (253)
T TIGR00755 28 LEGD--VVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDL-----PDFPK 94 (253)
T ss_pred CCcC--EEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCCh-----hHcCC
Confidence 3566 999999999999999998876 8999999994 4444443321 2345666666544331 1355
Q ss_pred --EEEEcccCC
Q 026858 142 --LVIAADVVY 150 (232)
Q Consensus 142 --~Ii~~~~~~ 150 (232)
+|+++.+++
T Consensus 95 ~~~vvsNlPy~ 105 (253)
T TIGR00755 95 QLKVVSNLPYN 105 (253)
T ss_pred cceEEEcCChh
Confidence 777665543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-06 Score=66.56 Aligned_cols=124 Identities=10% Similarity=0.110 Sum_probs=80.2
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
...|-|+|||-+-++. ... ..|+..|+-+ .+.+|..+.+ .+ .+..+++.|++|.+-
T Consensus 181 ~~vIaD~GCGEakiA~---~~~-~kV~SfDL~a---------------~~~~V~~cDm--~~---vPl~d~svDvaV~CL 236 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SER-HKVHSFDLVA---------------VNERVIACDM--RN---VPLEDESVDVAVFCL 236 (325)
T ss_pred ceEEEecccchhhhhh---ccc-cceeeeeeec---------------CCCceeeccc--cC---CcCccCcccEEEeeH
Confidence 3489999999975544 223 3788888644 1122233322 22 222467899999988
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
.++. .++..++.++.|+|++||.++|+.-.........|...+.. ||.+..... ...-+.+|.+++..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~-------~n~~F~lfefkK~~ 305 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDV-------SNKYFTLFEFKKTP 305 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhh-------hcceEEEEEEecCC
Confidence 7775 57889999999999999999998754443444456666664 888776532 22334566665543
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.4e-06 Score=65.80 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=67.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+++|||+|.|.+|+.+|.. +..+++.+|... -+.........-+ + .++.+...+... .....+||+|++-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~--L-~nv~v~~~R~E~----~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG--L-SNVEVINGRAEE----PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH----TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC--C-CCEEEEEeeecc----cccCCCccEEEeeh
Confidence 7999999999999999876 444899999886 2444443333332 2 135666665544 12356899999864
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+ ..+..+++.+..++++||.+++.-
T Consensus 124 v----~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 124 V----APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp S----SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred h----cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 4 567889999999999999988654
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=69.59 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=78.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+||||||.|...+.+|+. +-..++|+++.. .+..+...+..... . ++.....|..........+++.|-|..+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL--K-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC--C-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 8999999999999888877 444899999987 56666665555542 1 35666665544333222345899999876
Q ss_pred cCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 148 VVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 148 ~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
+==|+. .-+.+++.+.+.|+|||.+.+.+....+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y 169 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEY 169 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHH
Confidence 654443 3468999999999999999999865543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7e-06 Score=62.65 Aligned_cols=126 Identities=16% Similarity=0.084 Sum_probs=83.9
Q ss_pred ceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchhH-HHHHHH
Q 026858 31 TSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISPV-MPALKH 107 (232)
Q Consensus 31 ~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~~-~~~~~~ 107 (232)
+-+=|+|..+++-|..... .-.+. .|||+|.|||.++-.+.+.| ...++++++|+. .....+
T Consensus 27 GaI~PsSs~lA~~M~s~I~-------------pesgl--pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~ 91 (194)
T COG3963 27 GAILPSSSILARKMASVID-------------PESGL--PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ 91 (194)
T ss_pred eeecCCcHHHHHHHHhccC-------------cccCC--eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence 4466788888888887665 34566 89999999999998887774 348999999983 222222
Q ss_pred HHHhcCCCCCCceEEEEeecCCCcc--cccCCCCccEEEEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 108 NLKRNKPVLNKSLKTSVLYWNNQDQ--INALKPPFDLVIAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 108 n~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
. .+. +.+..+|.-+... .++....||.|+++-++.+ .+..-.+++.+...+.+||.++...+..
T Consensus 92 ~----~p~----~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 92 L----YPG----VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred h----CCC----ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 1 111 1233333222221 1222346999999888753 3455677888888999999999887653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-05 Score=67.29 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=92.9
Q ss_pred EeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCC
Q 026858 11 LPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGL 90 (232)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~ 90 (232)
+.+.++.++++..++.+.=. -+.....|.+++.+... . ... .|||+-||+|.+|+.+|....
T Consensus 158 l~~~~~~~~~~~~~~sFfQv--N~~~~~~l~~~~~~~l~-------------~-~~~--~vlDlycG~G~fsl~la~~~~ 219 (352)
T PF05958_consen 158 LEIQDKGLSFRISPGSFFQV--NPEQNEKLYEQALEWLD-------------L-SKG--DVLDLYCGVGTFSLPLAKKAK 219 (352)
T ss_dssp --ECCCTEEEEEETTS---S--BHHHHHHHHHHHHHHCT-------------T--TT--EEEEES-TTTCCHHHHHCCSS
T ss_pred eeeeccceEEEECCCcCccC--cHHHHHHHHHHHHHHhh-------------c-CCC--cEEEEeecCCHHHHHHHhhCC
Confidence 33455556666666532222 23355667777777665 2 223 799999999999999999765
Q ss_pred CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-------c---cc---CCCCccEEEEcccCCCcccHH
Q 026858 91 ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-------I---NA---LKPPFDLVIAADVVYIEESAA 156 (232)
Q Consensus 91 ~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-------~---~~---~~~~fD~Ii~~~~~~~~~~~~ 156 (232)
+|+++|+++ ++..++.|+..|+.. ++.+...+..+... + .+ ....+|+|+..++=-. .-+
T Consensus 220 -~V~gvE~~~~av~~A~~Na~~N~i~---n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G--~~~ 293 (352)
T PF05958_consen 220 -KVIGVEIVEEAVEDARENAKLNGID---NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG--LDE 293 (352)
T ss_dssp -EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCH
T ss_pred -eEEEeeCCHHHHHHHHHHHHHcCCC---cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC--chH
Confidence 999999998 688999999998732 36777665432110 0 01 1125899997554332 123
Q ss_pred HHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCC
Q 026858 157 QLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 157 ~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
.+++.+.+ +.-.+++++..... ...+ ..+.++|++..+....
T Consensus 294 ~~~~~~~~---~~~ivYvSCnP~tl--aRDl-~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 294 KVIELIKK---LKRIVYVSCNPATL--ARDL-KILKEGYKLEKVQPVD 335 (352)
T ss_dssp HHHHHHHH---SSEEEEEES-HHHH--HHHH-HHHHCCEEEEEEEEE-
T ss_pred HHHHHHhc---CCeEEEEECCHHHH--HHHH-HHHhhcCEEEEEEEee
Confidence 45555543 45567777754331 2223 3345689988876544
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=70.68 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=81.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC-CCC------------------------CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK-PVL------------------------NK 118 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~------------------------~~ 118 (232)
.+. ++||||||+-+.....|..-+.++++.|+.+. .+...+=+.... .++ ..
T Consensus 56 ~g~--~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGE--TLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EE--EEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCC--EEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 556 89999999976655555555668999999873 333322211110 001 11
Q ss_pred ce-EEEEeecCCCccccc---CCCCccEEEEcccCC----CcccHHHHHHHHHHhhCCCcEEEEEEeecC----------
Q 026858 119 SL-KTSVLYWNNQDQINA---LKPPFDLVIAADVVY----IEESAAQLVRAMEALVADDGVVLLGYQLRS---------- 180 (232)
Q Consensus 119 ~i-~~~~~d~~~~~~~~~---~~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~---------- 180 (232)
.| .+...|+.+...... .+.+||+|++..++. ..+....+++++.++|||||.++++.-...
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 12 245667777665433 233599999988884 445778889999999999999999632211
Q ss_pred ---hhHHHHHHHHHh-cCceEEEecC
Q 026858 181 ---PEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 181 ---~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
+...+...+.+. .||.+....+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 233455555565 4999988873
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-05 Score=70.42 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=76.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||++||+|.-+..+|.. +.+.+++.|+++ .+..++.|+++.+.. ++.....|..... ....+.||
T Consensus 113 pg~--~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~---nv~v~~~D~~~~~--~~~~~~fD 185 (470)
T PRK11933 113 APQ--RVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS---NVALTHFDGRVFG--AALPETFD 185 (470)
T ss_pred CCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---eEEEEeCchhhhh--hhchhhcC
Confidence 667 9999999999988777765 334899999998 478888888876522 2444444432211 12235699
Q ss_pred EEEEcccCCCc----c------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHH
Q 026858 142 LVIAADVVYIE----E------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHK 185 (232)
Q Consensus 142 ~Ii~~~~~~~~----~------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~ 185 (232)
.|++-.+.... . .-..++....++|+|||+++.++-.-.+..-+
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE 251 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ 251 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH
Confidence 99974443211 1 12567788889999999999887665544333
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.5e-06 Score=73.47 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=73.9
Q ss_pred CcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 69 RRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
.+|||+.||+|..++.+++. |+.+|+++|+++ ++..+++|++.|... ++.+...|...... ....+||+|..
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~---~~~v~~~Da~~~l~--~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE---NIEVPNEDAANVLR--YRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEchhHHHHHH--HhCCCCCEEEe
Confidence 38999999999999999886 677999999999 688999999888632 24455544332221 11246999997
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|++. ...+++..+.+.++++|.++++
T Consensus 121 -DPfG---s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 121 -DPFG---TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -CCCC---CcHHHHHHHHHhcccCCEEEEE
Confidence 5543 3356888888999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.8e-06 Score=72.63 Aligned_cols=106 Identities=18% Similarity=0.303 Sum_probs=72.1
Q ss_pred CCcEEEeCccccHH--H--HHHHHh------CCCcEEEEcchh-HHHHHHHHHH------------------h--c----
Q 026858 68 RRRAIELGAGCGAA--G--MAFYLL------GLADIVLTDISP-VMPALKHNLK------------------R--N---- 112 (232)
Q Consensus 68 ~~~VLElGcGtG~~--s--~~la~~------~~~~v~~~D~s~-~~~~~~~n~~------------------~--~---- 112 (232)
+++|+-.||+||-- | +.+... .. +|+++|+|+ ++..++...- . +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~-~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRW-KVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCc-EEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 46999999999983 3 333332 13 799999998 4555444310 0 0
Q ss_pred ----CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 113 ----KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 113 ----~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+.+...|.|...+...... + ..+.||+|+|.+++. ..+....+++.+++.|+|||.+++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~-~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQW-A-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCC-c-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 01134567788877765321 1 136799999988773 45678999999999999999988765
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.6e-07 Score=70.27 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=63.9
Q ss_pred CCCcEEEeCccccHH----HHHHHHh-----C--CCcEEEEcchhH-HHHHHHHH-----Hhc--------------C--
Q 026858 67 TRRRAIELGAGCGAA----GMAFYLL-----G--LADIVLTDISPV-MPALKHNL-----KRN--------------K-- 113 (232)
Q Consensus 67 ~~~~VLElGcGtG~~----s~~la~~-----~--~~~v~~~D~s~~-~~~~~~n~-----~~~--------------~-- 113 (232)
.+++|+-.||+||-= ++.+... + . +++++|+|+. +..+++-. .++ +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~-~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDF-RILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SE-EEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCce-EEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 456999999999983 2333331 1 3 8999999983 44433211 000 0
Q ss_pred ----CCCCCceEEEEeecCCCcccccCCCCccEEEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 114 ----PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV--YIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 114 ----~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+.+...|.|...+..+.. ...+.||+|+|-+++ +..+....+++.+++.|+|||.+++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~---~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPD---PPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCC---cccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 001346889988887722 134689999999988 356778999999999999999999975
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.3e-06 Score=64.79 Aligned_cols=101 Identities=17% Similarity=0.242 Sum_probs=70.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CC--CcEEEEcchh-HHHHHHHHHHhcCC-----C--CCCceEEEEeecCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GL--ADIVLTDISP-VMPALKHNLKRNKP-----V--LNKSLKTSVLYWNNQDQ 132 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~--~~v~~~D~s~-~~~~~~~n~~~~~~-----~--~~~~i~~~~~d~~~~~~ 132 (232)
.++. +.||+|+|||.++-.+++. ++ ...+++|.-+ .++...+|+..... . -..++.+...|......
T Consensus 81 ~pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 81 QPGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred ccCc--ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 3888 9999999999999888865 22 1448999766 57777887765431 0 13445666665544442
Q ss_pred cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 133 INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
...+||.|.+.. ....+-+.+...|++||++++-
T Consensus 159 ---e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 159 ---EQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ---ccCCcceEEEcc------CccccHHHHHHhhccCCeEEEe
Confidence 345799999873 3344566778889999999874
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=76.50 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=79.6
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHH-HHH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVM-PAL 105 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~-~~~ 105 (232)
.+.|+....++....+.+.+..... ...+.=..+||+|||+|.++-.+...+. ....+-....- .+.
T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~~~~-----------~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qv 155 (506)
T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMIPLI-----------KWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQV 155 (506)
T ss_pred CCCCccccCCHHHHHHHHHHHhhcc-----------ccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhh
Confidence 3455566667777777777766510 0122223899999999999988888765 33333332211 122
Q ss_pred HHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 106 KHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 106 ~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+-.+++..+.. +... ...-+++.++.||+|.|+.+.-.+ ..-..++-++.|+|+|||+++.+.+..
T Consensus 156 qfaleRGvpa~---~~~~-----~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 156 QFALERGVPAM---IGVL-----GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhhcCcchh---hhhh-----ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 22222222111 1110 011234556789999999998633 333567889999999999999987653
|
; GO: 0008168 methyltransferase activity |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-06 Score=65.35 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=58.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.+.++ .++|||||+|.+++..+..+...|+|+|+++ +++...+|...-.. ++.+.+-+..+... ..+.||
T Consensus 46 diEgk--kl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv----qidlLqcdildle~---~~g~fD 116 (185)
T KOG3420|consen 46 DIEGK--KLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV----QIDLLQCDILDLEL---KGGIFD 116 (185)
T ss_pred cccCc--chhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh----hhheeeeeccchhc---cCCeEe
Confidence 47889 9999999999999888888888999999999 57777777765431 22444444443332 236799
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.++.++++.
T Consensus 117 taviNppFG 125 (185)
T KOG3420|consen 117 TAVINPPFG 125 (185)
T ss_pred eEEecCCCC
Confidence 999988885
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.8e-05 Score=60.36 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=68.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC--CC--------cEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG--LA--------DIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQD 131 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~--~~--------~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~ 131 (232)
..++. .|||--||+|.+.+.++..+ .. ++++.|+++ ++..++.|+...+ +...+.+...|.....
T Consensus 26 ~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 26 WRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDFIQWDARELP 101 (179)
T ss_dssp --TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGG
T ss_pred CCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEEEecchhhcc
Confidence 34666 99999999999998887662 31 278999998 5788888988765 4456777777765544
Q ss_pred ccccCCCCccEEEEcccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 132 QINALKPPFDLVIAADVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 132 ~~~~~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
...+.+|.|+++++..... ....+++.+.+++++ ..+++....+
T Consensus 102 ---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 102 ---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp ---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred ---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 2346899999977764221 233445666666777 5555554333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.7e-05 Score=68.23 Aligned_cols=124 Identities=14% Similarity=0.187 Sum_probs=76.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCC-CCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPV-LNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||.||+|.|.+...+.+. +..+++++|+++. ++.+++....+... ..+++.+...|..... ....++||+|++.
T Consensus 106 ~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L--~~~~~~yDvIi~D 183 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL--EKRDEKFDVIIGD 183 (336)
T ss_pred EEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH--hhCCCCccEEEec
Confidence 8999999999988877765 4568999999994 55666554433211 1345666665533322 1224579999974
Q ss_pred ccCCC----cc---cHHHHHH-HHHHhhCCCcEEEEEEee----cChhHHHHHHHHHhcCce
Q 026858 147 DVVYI----EE---SAAQLVR-AMEALVADDGVVLLGYQL----RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 147 ~~~~~----~~---~~~~~l~-~l~~~l~pgG~l~i~~~~----r~~~~~~~~~~~~~~~f~ 196 (232)
.... +. --..+++ .+.+.|+|||.+++-... ..........+.+...|.
T Consensus 184 -~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~ 244 (336)
T PLN02823 184 -LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK 244 (336)
T ss_pred -CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence 2211 00 1235676 889999999998764322 122334455556666564
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.5e-05 Score=70.20 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=98.9
Q ss_pred eEEEeecCeeEEEEEcCCCCCccce-------eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTS-------VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~-------~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
.|.+.+.+...+|.-+.+..+--.| .-|--..|+.-+.....+ ..++. .++|-+||+|.
T Consensus 138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w------------~~~~~--~l~DP~CGSGT 203 (702)
T PRK11783 138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSGW------------PQEGT--PLLDPMCGSGT 203 (702)
T ss_pred EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcCC------------CCCCC--eEEccCCCccH
Confidence 6777788888888777753322222 222334466655544331 02456 89999999999
Q ss_pred HHHHHHHh------C-------------------------------------CCcEEEEcchh-HHHHHHHHHHhcCCCC
Q 026858 81 AGMAFYLL------G-------------------------------------LADIVLTDISP-VMPALKHNLKRNKPVL 116 (232)
Q Consensus 81 ~s~~la~~------~-------------------------------------~~~v~~~D~s~-~~~~~~~n~~~~~~~~ 116 (232)
+.+.+|.. | ..+++++|+++ ++..++.|+..++ +
T Consensus 204 ilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g--~ 281 (702)
T PRK11783 204 LLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAG--V 281 (702)
T ss_pred HHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcC--C
Confidence 99877652 0 01599999998 6889999998876 4
Q ss_pred CCceEEEEeecCCCcccccCCCCccEEEEcccCCCc----ccHHHHHHHHHHhhC---CCcEEEEEEe
Q 026858 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE----ESAAQLVRAMEALVA---DDGVVLLGYQ 177 (232)
Q Consensus 117 ~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~---pgG~l~i~~~ 177 (232)
...+.+...|+.+... ....++||+|++++++... .+...+...+.+.++ +|+.+++...
T Consensus 282 ~~~i~~~~~D~~~~~~-~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 282 AELITFEVKDVADLKN-PLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred CcceEEEeCChhhccc-ccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4557777777765432 1112469999998776422 234555555555554 8888877763
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00011 Score=59.36 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=94.9
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
.++.-|...+....- ..+++ .+||+|+.||-++..+.+.|+.+|+++|.... +..-.+ +.
T Consensus 62 RG~~KL~~ale~F~l-------------~~k~k--v~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR----~d 122 (245)
T COG1189 62 RGGLKLEKALEEFEL-------------DVKGK--VVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR----ND 122 (245)
T ss_pred cHHHHHHHHHHhcCc-------------CCCCC--EEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh----cC
Confidence 346667777766554 67888 99999999999999999999999999998762 111111 11
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe---------------e
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ---------------L 178 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~---------------~ 178 (232)
...+.....++....... ..+..|++++.-.+ -.+..++..+..++++++.++...+ .
T Consensus 123 ---~rV~~~E~tN~r~l~~~~-~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv 195 (245)
T COG1189 123 ---PRVIVLERTNVRYLTPED-FTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVV 195 (245)
T ss_pred ---CcEEEEecCChhhCCHHH-cccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCcee
Confidence 112334444443332211 23467899874433 3567788899999999988777522 1
Q ss_pred cCh----hHHHHHHHHHhc-CceEEEecCCCCCCC
Q 026858 179 RSP----EAHKLFWEMCAE-VFLIEKVPHEDLHPD 208 (232)
Q Consensus 179 r~~----~~~~~~~~~~~~-~f~~~~~~~~~~~~~ 208 (232)
+.+ .....+.+.+.+ +|.+..+....+...
T Consensus 196 ~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 196 RDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred cCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 122 234445555554 799888876655544
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.5e-05 Score=67.65 Aligned_cols=151 Identities=15% Similarity=0.075 Sum_probs=84.4
Q ss_pred CcEEEeCccccHHHHHHHHhC---------CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCc--ccccC
Q 026858 69 RRAIELGAGCGAAGMAFYLLG---------LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQD--QINAL 136 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~---------~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 136 (232)
.+|||.|||+|.+...++... ...++++|+++ ++..++.++.... .. .+.....+..... .....
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~--~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LL--EINVINFNSLSYVLLNIESY 109 (524)
T ss_pred eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CC--Cceeeecccccccccccccc
Confidence 389999999999887776431 13789999998 4666666665432 11 1111211111100 00112
Q ss_pred CCCccEEEEcccCCCcc----c------------------------------------------HHHH-HHHHHHhhCCC
Q 026858 137 KPPFDLVIAADVVYIEE----S------------------------------------------AAQL-VRAMEALVADD 169 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~----~------------------------------------------~~~~-l~~l~~~l~pg 169 (232)
.+.||+||++++.-... . ...+ ++...++|++|
T Consensus 110 ~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~ 189 (524)
T TIGR02987 110 LDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKN 189 (524)
T ss_pred cCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCC
Confidence 35799999988874211 0 0012 35567888999
Q ss_pred cEEEEEEeecC--hhHHHHHHHHHhcCceEEEecCCCC-CCCCC--CCceEEEEEEec
Q 026858 170 GVVLLGYQLRS--PEAHKLFWEMCAEVFLIEKVPHEDL-HPDYG--YEETDVYILRKK 222 (232)
Q Consensus 170 G~l~i~~~~r~--~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~--~~~~~l~~~~~~ 222 (232)
|++.++.+..- ......+.+.+-+...+..+..... ...|. .....++.+++.
T Consensus 190 G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 190 GYVSIISPASWLGDKTGENLREYIFNNRLINCIQYFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred CEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEECCccccCcCCCCcceEEEEEECC
Confidence 99998765431 1234566666666566665544322 22343 223446666543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.4e-06 Score=63.77 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=53.2
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
.|+|+.||.|..++.+|+... +|+++|+++. +..+++|++.-+ +..++.+...||.+..........+|+|+++++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 699999999999999999865 9999999995 888899988776 566799999998765421111112899998775
Q ss_pred C
Q 026858 149 V 149 (232)
Q Consensus 149 ~ 149 (232)
-
T Consensus 79 W 79 (163)
T PF09445_consen 79 W 79 (163)
T ss_dssp B
T ss_pred C
Confidence 4
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.1e-05 Score=59.93 Aligned_cols=128 Identities=15% Similarity=0.224 Sum_probs=77.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+.||.|||.|.++..+...-+.+|-.+|..+- +..++..+.... .....+......+.. ...++||+|++--+
T Consensus 58 ~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~---P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 58 RALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFT---PEEGKYDLIWIQWC 131 (218)
T ss_dssp EEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG-------TT-EEEEEEES-
T ss_pred eEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhcc---CCCCcEeEEEehHh
Confidence 99999999999998776655779999999883 444443322211 111233333222221 22468999999888
Q ss_pred CC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC-------------hhHHHHHHHHHhc-CceEEEecCC
Q 026858 149 VY--IEESAAQLVRAMEALVADDGVVLLGYQLRS-------------PEAHKLFWEMCAE-VFLIEKVPHE 203 (232)
Q Consensus 149 ~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-------------~~~~~~~~~~~~~-~f~~~~~~~~ 203 (232)
+. ...++-.+++.+++.|+|+|.|++-...-. ....+.|.++.++ ++.+.....+
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 84 456888999999999999999998422111 0125677777764 8887665443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=64.12 Aligned_cols=108 Identities=13% Similarity=0.127 Sum_probs=55.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHH-HHH---HHHh---cCCCCCCceEEEEeecCCCccccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPA-LKH---NLKR---NKPVLNKSLKTSVLYWNNQDQINA 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~-~~~---n~~~---~~~~~~~~i~~~~~d~~~~~~~~~ 135 (232)
.++. .++|||||.|.+.+.+|.. ++.+++|+++.+.... +.. ..+. .......++.+...|+.+......
T Consensus 41 ~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 41 TPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp -TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 3567 9999999999988877754 8877999999874222 211 1111 111113455666665544321111
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
.-..-|+|++++..+.++.... +..+...||+|.+++-
T Consensus 119 ~~s~AdvVf~Nn~~F~~~l~~~-L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 IWSDADVVFVNNTCFDPDLNLA-LAELLLELKPGARIIS 156 (205)
T ss_dssp HGHC-SEEEE--TTT-HHHHHH-HHHHHTTS-TT-EEEE
T ss_pred hhcCCCEEEEeccccCHHHHHH-HHHHHhcCCCCCEEEE
Confidence 1134699999988886554444 4556667788877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=58.67 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=86.0
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKP 114 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~ 114 (232)
+++..|.+|+....... .....++++|||||=+....+ ...+.-.|+.+|+++. ..
T Consensus 30 dSSK~lv~wL~~~~~~~-----------~~~~~~lrlLEVGals~~N~~--s~~~~fdvt~IDLns~---------~~-- 85 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRP-----------KNGRPKLRLLEVGALSTDNAC--STSGWFDVTRIDLNSQ---------HP-- 85 (219)
T ss_pred chhHHHHHHhhhhcccc-----------ccccccceEEeecccCCCCcc--cccCceeeEEeecCCC---------CC--
Confidence 57889999998765411 111124699999996432111 1223337999998761 00
Q ss_pred CCCCceEEEEeecCCCcccccCCCCccEEEEcccCC---CcccHHHHHHHHHHhhCCCcE-----EEEEEe-----ecCh
Q 026858 115 VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY---IEESAAQLVRAMEALVADDGV-----VLLGYQ-----LRSP 181 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~pgG~-----l~i~~~-----~r~~ 181 (232)
...+-|+...+.-....++||+|.++-++- .+...-.+++.++++|+|+|. ++++.+ +..+
T Consensus 86 ------~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy 159 (219)
T PF11968_consen 86 ------GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY 159 (219)
T ss_pred ------CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc
Confidence 112223322211111246899999998884 455788899999999999999 888643 2334
Q ss_pred hHHHHHHHHHhc-CceEEEec
Q 026858 182 EAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 182 ~~~~~~~~~~~~-~f~~~~~~ 201 (232)
...+.|...+.. ||......
T Consensus 160 ~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 160 MTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred cCHHHHHHHHHhCCcEEEEEE
Confidence 557777777776 88776654
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.9e-05 Score=64.28 Aligned_cols=156 Identities=17% Similarity=0.083 Sum_probs=83.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--------CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--------GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--------~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~ 133 (232)
..++. +|+|-.||+|.+.+.+.+. ...+++|+|+++ ++..+..|+...+... ........|.-.....
T Consensus 44 ~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~-~~~~i~~~d~l~~~~~ 120 (311)
T PF02384_consen 44 PKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN-SNINIIQGDSLENDKF 120 (311)
T ss_dssp T-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC-BGCEEEES-TTTSHSC
T ss_pred ccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc-cccccccccccccccc
Confidence 44566 8999999999987766541 333899999998 4556666665443111 1122333332221110
Q ss_pred ccCCCCccEEEEcccCCCc--c-------------------cHHHHHHHHHHhhCCCcEEEEEEeecC---hhHHHHHHH
Q 026858 134 NALKPPFDLVIAADVVYIE--E-------------------SAAQLVRAMEALVADDGVVLLGYQLRS---PEAHKLFWE 189 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~--~-------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~---~~~~~~~~~ 189 (232)
. ....||+|++++++... . .--.++..+.+.|++||++.++.+..- ......+.+
T Consensus 121 ~-~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~ 199 (311)
T PF02384_consen 121 I-KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRK 199 (311)
T ss_dssp T-ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHH
T ss_pred c-cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHH
Confidence 0 13579999998887432 0 112477888999999999877765321 122455666
Q ss_pred HHhcCceEEEecCCCCCCCCC--CCceEEEEEEecC
Q 026858 190 MCAEVFLIEKVPHEDLHPDYG--YEETDVYILRKKK 223 (232)
Q Consensus 190 ~~~~~f~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 223 (232)
.+-+.+.++.+-.-. ...|. .-...++.+.+..
T Consensus 200 ~ll~~~~i~aVI~Lp-~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 200 YLLENGYIEAVISLP-SNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp HHHHHEEEEEEEE---TTSSSSSSS-EEEEEEEESS
T ss_pred HHHhhchhhEEeecc-cceecccCcCceEEEEeecc
Confidence 555545555443221 11232 2234566666655
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4e-05 Score=63.74 Aligned_cols=109 Identities=21% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCCcEEEeCccccH--HH--HHHHHh-------CCCcEEEEcchh-HHHHHHHH------HHhcC---------------
Q 026858 67 TRRRAIELGAGCGA--AG--MAFYLL-------GLADIVLTDISP-VMPALKHN------LKRNK--------------- 113 (232)
Q Consensus 67 ~~~~VLElGcGtG~--~s--~~la~~-------~~~~v~~~D~s~-~~~~~~~n------~~~~~--------------- 113 (232)
.+++|.-.||+||- .| +.+... .. +|+++|+|. ++..++.- ..++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~-~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRV-KILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCce-EEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 46799999999997 33 333332 24 899999997 34433321 10110
Q ss_pred -----CCCCCceEEEEeecCCCcccccCCCCccEEEEcccC-C-CcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 114 -----PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV-Y-IEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 114 -----~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~-~-~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
..+...|.|...+...... ..+.||+|+|-+++ | ....-..++..++..|+|||.+++.....
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET 244 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence 0012346677776655542 35679999999988 4 55678889999999999999999986433
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=64.07 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=83.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.+. +|||-..|-|..++.+++.|+.+|..++.++ ++..+.-|...... ....+.....|.-+.- -...+.+||.|
T Consensus 134 ~G~--rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V-~~~~D~sfDaI 209 (287)
T COG2521 134 RGE--RVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVV-KDFDDESFDAI 209 (287)
T ss_pred cCC--EeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHH-hcCCccccceE
Confidence 577 9999999999999999999998999999998 34444444332221 1112333333321111 11234579999
Q ss_pred EEcccCCCcc---cHHHHHHHHHHhhCCCcEEEEEE-----eecChhHHHHHHHHHhc-CceEEE
Q 026858 144 IAADVVYIEE---SAAQLVRAMEALVADDGVVLLGY-----QLRSPEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 144 i~~~~~~~~~---~~~~~l~~l~~~l~pgG~l~i~~-----~~r~~~~~~~~~~~~~~-~f~~~~ 199 (232)
|-.++=++.. --+.+.++++++|+|||+++.-. ..|..+......+.+.+ +|.+..
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeee
Confidence 9644433222 23567788999999999998853 22333445566666665 897543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00087 Score=53.88 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=93.3
Q ss_pred cceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHH
Q 026858 30 GTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPAL 105 (232)
Q Consensus 30 g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~ 105 (232)
..|+|.--.- |+..+..-.. .+...++. +||-||+.+|.+-.+++.. + -+.|++++.|+ .++.+
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~----------~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLE----------NIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDL 114 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S------------S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHH
T ss_pred ceeecCchhhHHHHHHHcCcc----------ccCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHH
Confidence 6789975433 6665554332 11256788 9999999999988888765 3 45899999998 34433
Q ss_pred HHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh----
Q 026858 106 KHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP---- 181 (232)
Q Consensus 106 ~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~---- 181 (232)
..-++.. .++...--|...+......-+..|+|++ |+. .+.+..-++.+....||+||.++++-+.|.-
T Consensus 115 ~~la~~R-----~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~ 187 (229)
T PF01269_consen 115 LNLAKKR-----PNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDSTA 187 (229)
T ss_dssp HHHHHHS-----TTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS
T ss_pred HHHhccC-----CceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcC
Confidence 3222221 1245556666666655445568999996 444 5577888999999999999999998765431
Q ss_pred hHHHHH---HHHHhc-CceEEEe
Q 026858 182 EAHKLF---WEMCAE-VFLIEKV 200 (232)
Q Consensus 182 ~~~~~~---~~~~~~-~f~~~~~ 200 (232)
...+.| .+.++. +|++.+.
T Consensus 188 ~p~~vf~~e~~~L~~~~~~~~e~ 210 (229)
T PF01269_consen 188 DPEEVFAEEVKKLKEEGFKPLEQ 210 (229)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCChheE
Confidence 123333 334444 7887544
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=60.09 Aligned_cols=115 Identities=9% Similarity=0.054 Sum_probs=75.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+||=||.|-|.+...+.+... +|+++|+++ +++.+++-..... ..-.+++..... + . ....++||+||+ |
T Consensus 75 ~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~---~--~~~~~~fDVIIv-D 146 (262)
T PRK00536 75 EVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L---L--DLDIKKYDLIIC-L 146 (262)
T ss_pred eEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h---h--hccCCcCCEEEE-c
Confidence 999999999999999998875 999999998 4555555222211 112344444431 1 1 111357999997 4
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEe--ecChhHHHHHHHHHhcCce
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQ--LRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~--~r~~~~~~~~~~~~~~~f~ 196 (232)
.++. +.+.+.+++.|+|||.++.-.. ..+........+.++..|.
T Consensus 147 s~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 147 QEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 4432 5677899999999999988432 2223334555556666675
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00054 Score=59.37 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=99.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceee---chH----HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVW---PCS----LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W---~~~----~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
-|++.+....++|--+.++.+--.|=| .+. ..|+.-|..... ..++. .++|==||+|.
T Consensus 140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~lag-------------w~~~~--pl~DPmCGSGT 204 (381)
T COG0116 140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLAG-------------WKPDE--PLLDPMCGSGT 204 (381)
T ss_pred EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHcC-------------CCCCC--ccccCCCCccH
Confidence 677778888888888876433333333 222 234444444444 44566 89999999999
Q ss_pred HHHHHHHhCC------C----------------------------------cEEEEcchh-HHHHHHHHHHhcCCCCCCc
Q 026858 81 AGMAFYLLGL------A----------------------------------DIVLTDISP-VMPALKHNLKRNKPVLNKS 119 (232)
Q Consensus 81 ~s~~la~~~~------~----------------------------------~v~~~D~s~-~~~~~~~n~~~~~~~~~~~ 119 (232)
+.+.+|..+. . .+++.|+++ +++.++.|++..+ +.+.
T Consensus 205 i~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AG--v~d~ 282 (381)
T COG0116 205 ILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAG--VGDL 282 (381)
T ss_pred HHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcC--CCce
Confidence 9998887642 0 278999999 6788888988877 6677
Q ss_pred eEEEEeecCCCcccccCCCCccEEEEcccCC----CcccHHHHHH----HHHHhhCCCcEEEEEE
Q 026858 120 LKTSVLYWNNQDQINALKPPFDLVIAADVVY----IEESAAQLVR----AMEALVADDGVVLLGY 176 (232)
Q Consensus 120 i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~----~~~~~~~~l~----~l~~~l~pgG~l~i~~ 176 (232)
|.+.+.|...... ..+.+|+||++++.. ....+..+.+ .+++.++.-++.+++.
T Consensus 283 I~f~~~d~~~l~~---~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 283 IEFKQADATDLKE---PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred EEEEEcchhhCCC---CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 8999998876653 115799999987763 2223333333 4445555566666665
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.6e-05 Score=61.07 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=56.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..+.. .|||+|.|||.++..+...+. +|+++++++. +....+.. ++....+++++...|+-..+ ...||
T Consensus 56 ~k~tD--~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv--~gtp~~~kLqV~~gD~lK~d-----~P~fd 125 (315)
T KOG0820|consen 56 LKPTD--VVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRV--QGTPKSGKLQVLHGDFLKTD-----LPRFD 125 (315)
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHh--cCCCccceeeEEecccccCC-----Ccccc
Confidence 44666 999999999999999999887 9999999994 44444422 23234567777777765443 35799
Q ss_pred EEEEcccC
Q 026858 142 LVIAADVV 149 (232)
Q Consensus 142 ~Ii~~~~~ 149 (232)
.+|++-+.
T Consensus 126 ~cVsNlPy 133 (315)
T KOG0820|consen 126 GCVSNLPY 133 (315)
T ss_pred eeeccCCc
Confidence 99975443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=53.87 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=85.7
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPA 104 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~ 104 (232)
+--+...++.+..=+.|+.+.- ...++ +||=+|= --+.|+.+|.. ...+++.+|+++ .+..
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~g--------------dL~gk--~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~f 82 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERG--------------DLEGK--RILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDF 82 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT---------------STT---EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH
T ss_pred cccccccHHHHHHHHHHHHhcC--------------cccCC--EEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHH
Confidence 3445667788888888888764 34778 9999984 34566666654 345999999999 4677
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCc-EEEEEEeecCh--
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDG-VVLLGYQLRSP-- 181 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG-~l~i~~~~r~~-- 181 (232)
..+.+.+.+ + .+.....|+.++.+. ...++||+++. ++.|-.+.+..++......|+..| ..+++...+.+
T Consensus 83 I~~~a~~~g--l--~i~~~~~DlR~~LP~-~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~ 156 (243)
T PF01861_consen 83 INRVAEEEG--L--PIEAVHYDLRDPLPE-ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP 156 (243)
T ss_dssp HHHHHHHHT------EEEE---TTS---T-TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred HHHHHHHcC--C--ceEEEEecccccCCH-HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence 777666655 2 268888888877542 23578999996 778888888999988888887655 77776655542
Q ss_pred hHHHHHHHHHhc-CceEEEe
Q 026858 182 EAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 182 ~~~~~~~~~~~~-~f~~~~~ 200 (232)
.....+.+.+.+ +|.++.+
T Consensus 157 ~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 157 DKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp HHHHHHHHHHHTS--EEEEE
T ss_pred HHHHHHHHHHHHCCcCHHHH
Confidence 222233444433 7777665
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.5e-05 Score=60.44 Aligned_cols=118 Identities=15% Similarity=0.207 Sum_probs=63.5
Q ss_pred cEEEeCccccHHHHHHHHhC--CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLLG--LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~ 146 (232)
+||||||++|..+..+.+.+ ..+++++|+.+.-. ..+...+..++... ........ .....+.+|+|++-
T Consensus 26 ~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~------~~~~~~i~~d~~~~-~~~~~i~~~~~~~~~~~dlv~~D 98 (181)
T PF01728_consen 26 TVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP------LQNVSFIQGDITNP-ENIKDIRKLLPESGEKFDLVLSD 98 (181)
T ss_dssp EEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------TTEEBTTGGGEEE-EHSHHGGGSHGTTTCSESEEEE-
T ss_pred EEEEcCCcccceeeeeeecccccceEEEEecccccc------ccceeeeecccchh-hHHHhhhhhccccccCcceeccc
Confidence 99999999999999998886 45999999987400 01111122222111 00000000 01112579999974
Q ss_pred ccCCC-----------cccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 147 DVVYI-----------EESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 147 ~~~~~-----------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
-.... .......+..+.+.|++||.+++-..... .. ..+...+...|+
T Consensus 99 ~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~-~~-~~~~~~l~~~F~ 157 (181)
T PF01728_consen 99 MAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGP-EI-EELIYLLKRCFS 157 (181)
T ss_dssp ------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST-TS-HHHHHHHHHHHH
T ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc-cH-HHHHHHHHhCCe
Confidence 42211 11233344455567899998887554332 22 367777766664
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0018 Score=51.24 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=96.8
Q ss_pred ceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHH
Q 026858 31 TSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKH 107 (232)
Q Consensus 31 ~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~ 107 (232)
.|.|..-.- |+.-+..-+. .+-..+++ +||-||+.+|....+.+.. +.+.+++++.++ .+.....
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~----------~~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~ 118 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLK----------NFPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLD 118 (231)
T ss_pred eeeeCcchhHHHHHHHcCcc----------cCCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHH
Confidence 567764332 5555543332 11155788 9999999999988777765 656899999998 4443333
Q ss_pred HHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh----hH
Q 026858 108 NLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP----EA 183 (232)
Q Consensus 108 n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~----~~ 183 (232)
-++.. .++.....|...++.....-+..|+|+. |+ ..+.+.+-+..+....|+++|.++++-+.|.- +.
T Consensus 119 ~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 119 VAEKR-----PNIIPILEDARKPEKYRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred HHHhC-----CCceeeecccCCcHHhhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 22221 1234445565555554445567899885 33 34567788899999999999999998776652 22
Q ss_pred HHHHHH---HH-hcCceEEEec
Q 026858 184 HKLFWE---MC-AEVFLIEKVP 201 (232)
Q Consensus 184 ~~~~~~---~~-~~~f~~~~~~ 201 (232)
.+.|.+ .+ ..+|++.+..
T Consensus 192 ~~vf~~ev~kL~~~~f~i~e~~ 213 (231)
T COG1889 192 EEVFKDEVEKLEEGGFEILEVV 213 (231)
T ss_pred HHHHHHHHHHHHhcCceeeEEe
Confidence 344432 33 3578776654
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00027 Score=59.26 Aligned_cols=109 Identities=28% Similarity=0.302 Sum_probs=63.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.+... +|||+|||+|.....+... ...+++++|.|+.+....+.+......... ............ .....
T Consensus 31 ~f~P~--~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~----~~~~~ 103 (274)
T PF09243_consen 31 DFRPR--SVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRN-AEWRRVLYRDFL----PFPPD 103 (274)
T ss_pred CCCCc--eEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccccc-chhhhhhhcccc----cCCCC
Confidence 44556 9999999999765544332 456999999999655454445444322111 000000000001 11234
Q ss_pred cEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 141 DLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 141 D~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|+|+++.++. .......+++.+.+.+++ .++++.+...
T Consensus 104 DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 104 DLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred cEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 9999999885 235667777777776665 7777776543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00022 Score=59.29 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=81.5
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCC------C----------------CCceEE---
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPV------L----------------NKSLKT--- 122 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~------~----------------~~~i~~--- 122 (232)
+.+||==|||.|.++..+|..|+ .+.+.+.|-.|..+.. ...|... + -..+.+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~-fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASN-FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHH-HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 35999999999999999999999 9999999984432222 2222100 0 000111
Q ss_pred -----------EEeecCCCcccccC---CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe----ecC----
Q 026858 123 -----------SVLYWNNQDQINAL---KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ----LRS---- 180 (232)
Q Consensus 123 -----------~~~d~~~~~~~~~~---~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~----~r~---- 180 (232)
..+-.++....-.. .+.||.|+.+..+--..++-..++++.++|||||..+=..+ ...
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~ 214 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIP 214 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCC
Confidence 01111111111111 35799999987776777889999999999999995443321 111
Q ss_pred -----hhHHHHHHHHHhc-CceEEEec
Q 026858 181 -----PEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 181 -----~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
....+++...... ||++..-.
T Consensus 215 ~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 215 NEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred CCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 1235666776665 89876544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.2e-05 Score=62.68 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=46.1
Q ss_pred CCcEEEeCccccH-HHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEeecCCCcccc---cCCCCc
Q 026858 68 RRRAIELGAGCGA-AGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVLYWNNQDQIN---ALKPPF 140 (232)
Q Consensus 68 ~~~VLElGcGtG~-~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~d~~~~~~~~---~~~~~f 140 (232)
.+++||||||... ..+..++. +. +++++|+++ .+..++.|+..| . +..+|......-.. ..+. ...+.|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~-~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPD-NIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST--SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCcc-ccchhhhccccee
Confidence 4589999999854 45555544 76 999999999 588999999988 5 56777776553211 1111 123479
Q ss_pred cEEEEcccCCCcc
Q 026858 141 DLVIAADVVYIEE 153 (232)
Q Consensus 141 D~Ii~~~~~~~~~ 153 (232)
|+.+|++++|...
T Consensus 179 dftmCNPPFy~s~ 191 (299)
T PF05971_consen 179 DFTMCNPPFYSSQ 191 (299)
T ss_dssp EEEEE-----SS-
T ss_pred eEEecCCccccCh
Confidence 9999999998543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00063 Score=59.18 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=84.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC---CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG---LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~---~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +|||+.+++|.=+.++|... ...|++.|.++ -+..+..|+++.+.. + +.....|-..........+
T Consensus 154 p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~--n-v~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 154 PKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR--N-VIVVNKDARRLAELLPGGE 228 (355)
T ss_pred CCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC--c-eEEEecccccccccccccC
Confidence 34677 99999999999776666652 22579999998 488888998887632 2 3444444332222111122
Q ss_pred CccEEEEcccCCCc-------c---------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHH-HHHHHHHhc--
Q 026858 139 PFDLVIAADVVYIE-------E---------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAH-KLFWEMCAE-- 193 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~-------~---------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~-~~~~~~~~~-- 193 (232)
+||.|++-.+.... + .-..++....++++|||+++.++-...++.- +.....+.+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~ 308 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP 308 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence 59999984443211 1 2456778888899999999998766665433 333344443
Q ss_pred CceEEEe
Q 026858 194 VFLIEKV 200 (232)
Q Consensus 194 ~f~~~~~ 200 (232)
+|....+
T Consensus 309 ~~~~~~~ 315 (355)
T COG0144 309 DFELEPV 315 (355)
T ss_pred Cceeecc
Confidence 4555444
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.001 Score=52.93 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=87.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----CC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA----LK 137 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~----~~ 137 (232)
.++. .|+||||-+|..+..+++. +. ..|+++|+.++ . ....+.+.+.|+........ ..
T Consensus 44 ~~~~--~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~----~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 44 KPGM--VVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------K----PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred cCCC--EEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------c----cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4667 9999999999999999887 22 25999999872 1 11226888888887764322 22
Q ss_pred C-CccEEEEcccC--C--Cc-------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCC
Q 026858 138 P-PFDLVIAADVV--Y--IE-------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDL 205 (232)
Q Consensus 138 ~-~fD~Ii~~~~~--~--~~-------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~ 205 (232)
+ .+|+|++-... . .. .....++.....+|+|||.+++-...- ...+.++..+...|....+....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~~~~F~~v~~~KP~- 185 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKALRRLFRKVKIFKPK- 185 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHHHHhhceeEEecCc-
Confidence 2 47999963222 1 11 123445555667889999998854322 23567777787777655554321
Q ss_pred CCCCCCCceEEEEEEec
Q 026858 206 HPDYGYEETDVYILRKK 222 (232)
Q Consensus 206 ~~~~~~~~~~l~~~~~~ 222 (232)
..+.....+|.+.+.
T Consensus 186 --aSR~~S~E~y~v~~~ 200 (205)
T COG0293 186 --ASRKRSREIYLVAKG 200 (205)
T ss_pred --cccCCCceEEEEEec
Confidence 123444466666554
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.8e-05 Score=62.57 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=66.6
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+.++||||+|-|-++..++..- .+|++++.|..|....+....| .....+|.+. +-+||+|.|.+
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~yn--------Vl~~~ew~~t------~~k~dli~clN 177 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKNYN--------VLTEIEWLQT------DVKLDLILCLN 177 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcCCc--------eeeehhhhhc------CceeehHHHHH
Confidence 4699999999999998887653 4899999998555443322211 1223344322 23699999988
Q ss_pred cCCCcccHHHHHHHHHHhhCC-CcEEEEE
Q 026858 148 VVYIEESAAQLVRAMEALVAD-DGVVLLG 175 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~p-gG~l~i~ 175 (232)
.+.--.+.-.+++.++.++.| +|+++++
T Consensus 178 lLDRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 178 LLDRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 876556778899999999998 8998875
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=64.15 Aligned_cols=108 Identities=7% Similarity=0.009 Sum_probs=71.8
Q ss_pred CcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 69 RRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
..+||||||.|-..+.+|.. +-..++|+|+.. .+..+.+.+...+ + .++.+...++..... ...++++|.|..+
T Consensus 349 p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~--l-~N~~~~~~~~~~~~~-~~~~~sv~~i~i~ 424 (506)
T PRK01544 349 KVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN--I-TNFLLFPNNLDLILN-DLPNNSLDGIYIL 424 (506)
T ss_pred ceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC--C-CeEEEEcCCHHHHHH-hcCcccccEEEEE
Confidence 38999999999999888876 334899999987 3444444433332 2 223444333221111 1124579999987
Q ss_pred ccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 147 DVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 147 ~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.+-=|++ .-+.++..+++.|+|||.+.+.+....
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 6654443 357789999999999999999875544
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00026 Score=59.41 Aligned_cols=103 Identities=14% Similarity=0.180 Sum_probs=67.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCC-CCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKP-VLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||-||.|.|.+...+.+. ...+++++|+++. ++.+++-...-.. ...+++.....|..+.. .....+||+|++
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v--~~~~~~fDvIi~- 155 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL--RDCEEKFDVIIV- 155 (282)
T ss_pred eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH--HhCCCcCCEEEE-
Confidence 9999999999999888877 4569999999995 5555553322211 11244444444322211 112237999997
Q ss_pred ccCCCcc-----cHHHHHHHHHHhhCCCcEEEEE
Q 026858 147 DVVYIEE-----SAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 147 ~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|+.-... .-..+.+.++++|+++|.++.-
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 3322211 2377899999999999999886
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=58.78 Aligned_cols=77 Identities=13% Similarity=-0.021 Sum_probs=52.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC--Cc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP--PF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~--~f 140 (232)
..++. +|||||+|.|.++..+++.+. +|+++++++.+....++... ...+++....|.-..+- .. .+
T Consensus 28 ~~~~d--~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~----~~l~~~ 96 (259)
T COG0030 28 ISPGD--NVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDF----PSLAQP 96 (259)
T ss_pred CCCCC--eEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcc----hhhcCC
Confidence 33566 999999999999999999987 89999999954333332221 12345777776655442 12 67
Q ss_pred cEEEEcccCC
Q 026858 141 DLVIAADVVY 150 (232)
Q Consensus 141 D~Ii~~~~~~ 150 (232)
+.|+++-+.+
T Consensus 97 ~~vVaNlPY~ 106 (259)
T COG0030 97 YKVVANLPYN 106 (259)
T ss_pred CEEEEcCCCc
Confidence 8888765554
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00029 Score=56.68 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=71.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cccC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INAL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~~ 136 (232)
....+ ++||||.=||..++..|.. .-++|+++|+++. .+....-.+..+ ...+|.+.........+ ....
T Consensus 71 ~~~ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a~esLd~l~~~~~ 146 (237)
T KOG1663|consen 71 LLNAK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPALESLDELLADGE 146 (237)
T ss_pred HhCCc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecchhhhHHHHHhcCC
Confidence 34567 9999999999988877765 3349999999983 444333333333 44566776665433321 1123
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+.||.++.-. +-.......+.+-+++++||.|++-
T Consensus 147 ~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 147 SGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEe
Confidence 46799999742 3334457888999999999999884
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00086 Score=55.36 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=75.9
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCC-CccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKP-PFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~-~fD~Ii~ 145 (232)
+||=||.|.|.+...+.+.. ..+++++|+++. ++.+++-..... ....+++.....|..... ..... +||+|+.
T Consensus 79 ~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l--~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 79 RVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL--KETQEEKYDVIIV 156 (246)
T ss_dssp EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH--HTSSST-EEEEEE
T ss_pred ceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH--HhccCCcccEEEE
Confidence 99999999999988887764 569999999995 555555333221 112345566555432211 11234 8999997
Q ss_pred cccC--CCcc--cHHHHHHHHHHhhCCCcEEEEEEeecC--hhHHHHHHHHHhcCce
Q 026858 146 ADVV--YIEE--SAAQLVRAMEALVADDGVVLLGYQLRS--PEAHKLFWEMCAEVFL 196 (232)
Q Consensus 146 ~~~~--~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~--~~~~~~~~~~~~~~f~ 196 (232)
-..- .... --..+++.+++.|+|+|.+++-..... +.......+.++..|.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 2211 1111 236788999999999999998653332 3334445556666554
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=52.49 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=71.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..|+. +|||-|+|+|.++..+++. .-++++..|..+. ...+++..+..+ +.+.+.+..-|+..... ...+..
T Consensus 103 i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF-~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGF-LIKSLK 177 (314)
T ss_pred CCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCc-cccccc
Confidence 56889 9999999999999999987 4469999999873 444445445444 66778888888766542 112456
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+|.|++. .. ..-.++..+.++++.+|.-+++
T Consensus 178 aDaVFLD-lP----aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 178 ADAVFLD-LP----APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEc-CC----ChhhhhhhhHHHhhhcCceEEe
Confidence 8999873 32 2334566677788877654444
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=47.74 Aligned_cols=105 Identities=25% Similarity=0.261 Sum_probs=61.9
Q ss_pred EEEeCccccHHHHHHHHhCC--CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CCccEEEEcc
Q 026858 71 AIELGAGCGAAGMAFYLLGL--ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PPFDLVIAAD 147 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~~~--~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~ 147 (232)
++|+|||+|... .++.... ..++++|.++.+........... .... +.+...+.... ..+... ..||++ ...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-GLGL-VDFVVADALGG-VLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-CCCc-eEEEEeccccC-CCCCCCCCceeEE-eee
Confidence 999999999976 4443321 27888999984322222111111 1100 34455544431 011122 379999 444
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
...+.......+..+.+.++|+|.+++......
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 127 LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 443222278899999999999999998875543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=56.14 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=63.9
Q ss_pred cEEEeCccccHHHHH-HHHh-----CCCcEEEEcchh-HHHHHHHHHH-hcCCCCCCceEEEEeecCCCcc-cc--cCCC
Q 026858 70 RAIELGAGCGAAGMA-FYLL-----GLADIVLTDISP-VMPALKHNLK-RNKPVLNKSLKTSVLYWNNQDQ-IN--ALKP 138 (232)
Q Consensus 70 ~VLElGcGtG~~s~~-la~~-----~~~~v~~~D~s~-~~~~~~~n~~-~~~~~~~~~i~~~~~d~~~~~~-~~--~~~~ 138 (232)
.++|+|||+|.-+.. +... .. +++.+|+|. .++.+..++. ...+.+ .+.-...|+.+... .+ ....
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~~~-~Y~plDIS~~~L~~a~~~L~~~~~p~l--~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKKSV-DYYALDVSRSELQRTLAELPLGNFSHV--RCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCCCc-eEEEEECCHHHHHHHHHhhhhccCCCe--EEEEEEecHHHHHhhcccccccC
Confidence 899999999985433 3222 34 899999998 5666666665 232221 12224444444321 11 1122
Q ss_pred CccEEEEcc-cCC--CcccHHHHHHHHHH-hhCCCcEEEEEE
Q 026858 139 PFDLVIAAD-VVY--IEESAAQLVRAMEA-LVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~-~~~--~~~~~~~~l~~l~~-~l~pgG~l~i~~ 176 (232)
...+++... .+. .+.....+++.+++ .|+||+.+++..
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 356666543 453 45567788899999 999999999963
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0014 Score=52.36 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=76.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
...+. +||++|-|.|+..-.+......+-+.++..+ +++.++.+.... ..++......|.+..+-- .++.||
T Consensus 99 ~tkgg--rvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L-~d~~FD 171 (271)
T KOG1709|consen 99 STKGG--RVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTL-PDKHFD 171 (271)
T ss_pred hhCCc--eEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccc-cccCcc
Confidence 34677 9999999999988877776555777788887 455555544333 345677788887754311 245799
Q ss_pred EEEEcccC-CCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVV-YIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~-~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
-|+- +.+ ...+++..+.+.+.++|||+|.+-++-
T Consensus 172 GI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 172 GIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 9985 444 345778888899999999999887653
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00054 Score=61.06 Aligned_cols=124 Identities=16% Similarity=0.136 Sum_probs=85.7
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKP 114 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~ 114 (232)
.+..|=.++.+++. ...++ .+||+-||||..++.+|+. +.+|+++++++ ++..++.|++.|+.
T Consensus 367 ~aevLys~i~e~~~-------------l~~~k--~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi 430 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAG-------------LPADK--TLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI 430 (534)
T ss_pred HHHHHHHHHHHHhC-------------CCCCc--EEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc
Confidence 46678888888877 55778 9999999999999999985 45999999998 68899999999874
Q ss_pred CCCCceEEEEeecCCCc-cccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 115 VLNKSLKTSVLYWNNQD-QINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~-~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.. ..|......+.- .+.. .-+.=++|...++.. ......++..+.+.-++.-.+++++..+
T Consensus 431 sN---a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 431 SN---ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred cc---eeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHH
Confidence 42 344444111111 0000 012345555555544 3455677778888777888888887654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00068 Score=56.60 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=58.6
Q ss_pred cEEEeCccc-cHHHHHHHHh---CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC-GAAGMAFYLL---GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G~~s~~la~~---~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=||||+ -+.++.+++. +. .++++|+++. ....++-.. ....+..++.+...|...... ....||+|+
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~~~~-~v~~iD~d~~A~~~a~~lv~-~~~~L~~~m~f~~~d~~~~~~---dl~~~DvV~ 197 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHGPGA-RVHNIDIDPEANELARRLVA-SDLGLSKRMSFITADVLDVTY---DLKEYDVVF 197 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HTT---EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-G---G----SEEE
T ss_pred eEEEEcCCCcchHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHh-hcccccCCeEEEecchhcccc---ccccCCEEE
Confidence 899999998 6677777754 34 7999999984 444433333 112245667888777643321 125799999
Q ss_pred EcccCC-CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 145 AADVVY-IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 145 ~~~~~~-~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+..+. ..+.-..++.++.+.++||..+++-.
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 887775 55677889999999999999988864
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=55.59 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=61.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE--c
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA--A 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~--~ 146 (232)
.+.|||+|+|.+++.+|+. +.+|++++.++- ...+.+|+..++. .++.....|...-+ -...|+|+| .
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~---~n~evv~gDA~~y~-----fe~ADvvicEml 105 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD---VNWEVVVGDARDYD-----FENADVVICEML 105 (252)
T ss_pred ceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC---cceEEEeccccccc-----ccccceeHHHHh
Confidence 8999999999999999987 569999999993 4444555433321 22444444432222 134688886 2
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
+...-.+...+.+..+.+.|+.++.++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 222333445566777777888877765
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00087 Score=50.45 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHH-----h-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYL-----L-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~-----~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 137 (232)
+.. +|+|+|||-|.++..++. . +. +|+++|.++. .+.+....+.........+.+...+..... ..
T Consensus 25 ~~~--~vvD~GsG~GyLs~~La~~l~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 97 (141)
T PF13679_consen 25 RCI--TVVDLGSGKGYLSRALAHLLCNSSPNL-RVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES----SS 97 (141)
T ss_pred CCC--EEEEeCCChhHHHHHHHHHHHhcCCCC-eEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc----cc
Confidence 445 999999999999999988 4 45 9999999984 444443333332222233344444332221 13
Q ss_pred CCccEEEE
Q 026858 138 PPFDLVIA 145 (232)
Q Consensus 138 ~~fD~Ii~ 145 (232)
...++++.
T Consensus 98 ~~~~~~vg 105 (141)
T PF13679_consen 98 DPPDILVG 105 (141)
T ss_pred CCCeEEEE
Confidence 45677765
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=49.58 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=43.1
Q ss_pred cEEEeCccccHHHHHHHHhCCC-cEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCC
Q 026858 70 RAIELGAGCGAAGMAFYLLGLA-DIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNN 129 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~-~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~ 129 (232)
+|||+|||.|..+..+++.+.. +++++|.++ ....+++|+..|.. .++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 4899999999999999887542 799999998 46678888877752 125666665544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.02 Score=49.27 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=58.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.++. ++|||||++|..+..+.+.|. +|+++|..++-.. +.. .++|.....+--.... ..+.+|++
T Consensus 210 ~~g~--~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~----L~~-----~~~V~h~~~d~fr~~p---~~~~vDwv 274 (357)
T PRK11760 210 APGM--RAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQS----LMD-----TGQVEHLRADGFKFRP---PRKNVDWL 274 (357)
T ss_pred CCCC--EEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHh----hhC-----CCCEEEEeccCcccCC---CCCCCCEE
Confidence 4777 999999999999999999998 9999997763222 111 1234444443222211 14579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCC--cEEEEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADD--GVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pg--G~l~i~~~ 177 (232)
++ |+...+ ..+.+.+.+.+..| ...++.-+
T Consensus 275 Vc-Dmve~P---~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 275 VC-DMVEKP---ARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred EE-ecccCH---HHHHHHHHHHHhcCcccEEEEEEE
Confidence 97 554433 34555566666544 34555433
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00018 Score=57.50 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=73.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~~ 147 (232)
.|+|..||.|-.++..|..++ .|+++|++++ +..+++|++.-+ +.++|.+.+.||-+.....+. ...+|+|..++
T Consensus 97 ~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYG--VPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeec--CCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 899999999998888888888 9999999996 777778877766 566999999998665432222 23478888887
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGV 171 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~ 171 (232)
+-..++-...-+-.+...+.|.|.
T Consensus 174 pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCCcchhhhhhhhhhhhcchhHH
Confidence 776665555555555566655543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=53.61 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=52.2
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCC--C----CCCceEEEEeecCCCcccccCCCCcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKP--V----LNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~--~----~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++|||+-+|+|..++.++..|+ +|+++|.++. ...++.+++.... . +..+++....|..... ......||
T Consensus 90 p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L--~~~~~~fD 166 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL--TDITPRPQ 166 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH--hhCCCCCc
Confidence 4899999999999999999999 6999999995 5566667665311 1 1133444444432221 11234799
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
+|++ |+.|
T Consensus 167 VVYl-DPMf 174 (250)
T PRK10742 167 VVYL-DPMF 174 (250)
T ss_pred EEEE-CCCC
Confidence 9997 4444
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.22 E-value=6e-05 Score=53.70 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=38.8
Q ss_pred EEeCccccHHHHHHHHh----CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEEc
Q 026858 72 IELGAGCGAAGMAFYLL----GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIAA 146 (232)
Q Consensus 72 LElGcGtG~~s~~la~~----~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~ 146 (232)
||+|+..|..++.+++. +..+++++|..+.....++..+... ...++.+...+.... ++.. .++||+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~--~~~~~~~~~g~s~~~--l~~~~~~~~dli~i- 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAG--LSDRVEFIQGDSPDF--LPSLPDGPIDLIFI- 75 (106)
T ss_dssp --------------------------EEEESS------------GG--G-BTEEEEES-THHH--HHHHHH--EEEEEE-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcC--CCCeEEEEEcCcHHH--HHHcCCCCEEEEEE-
Confidence 79999999988777653 2237999998873112222222211 334466666654221 1122 368999997
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|.-|..+.....++.+.+.|+|||.+++-
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 44444566677788888889999988764
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.003 Score=50.64 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=71.4
Q ss_pred EEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC-CccEEEEcc
Q 026858 71 AIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP-PFDLVIAAD 147 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~fD~Ii~~~ 147 (232)
|.|+||.-|.+++.+.+.+ +.+++++|+++. +..++.++...+ +..++.+...|--... ..+ ..|.|+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l----~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVL----KPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCccccc----CCCCCCCEEEEec
Confidence 6899999999999999885 458999999995 888888888776 5566766666422211 112 368888765
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+ ....+...++.....++....+++ .+..+ ...+.+.+. .+|.+..-
T Consensus 75 M--GG~lI~~ILe~~~~~~~~~~~lIL-qP~~~---~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 75 M--GGELIIEILEAGPEKLSSAKRLIL-QPNTH---AYELRRWLYENGFEIIDE 122 (205)
T ss_dssp E---HHHHHHHHHHTGGGGTT--EEEE-EESS----HHHHHHHHHHTTEEEEEE
T ss_pred C--CHHHHHHHHHhhHHHhccCCeEEE-eCCCC---hHHHHHHHHHCCCEEEEe
Confidence 3 334555566655555555445554 44444 234555554 48887654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00078 Score=58.55 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=72.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH--HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV--MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~--~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+++. .++++|||.|-++..++..+...++++|.++- ......+.... +..+-.+...+..+.+ ..+..||
T Consensus 109 ~~~~--~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~---l~~k~~~~~~~~~~~~---fedn~fd 180 (364)
T KOG1269|consen 109 FPGS--KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY---LDNKCNFVVADFGKMP---FEDNTFD 180 (364)
T ss_pred cccc--cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH---hhhhcceehhhhhcCC---CCccccC
Confidence 4566 79999999999999998875449999999872 11111111111 1111122333333332 2456899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+-+.+..-+..+...++++++++++|||..+.-
T Consensus 181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999989999999999999999999998874
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.003 Score=46.30 Aligned_cols=50 Identities=18% Similarity=0.223 Sum_probs=42.5
Q ss_pred cccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 62 LDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 62 ~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
+...++ +|+|||++.|..++.++..|+++|++.+.++- .+..+.|++.+.
T Consensus 25 idvk~K--tV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 25 LNVYQR--TIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred eeecCC--EEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 356888 99999999999999999999999999999984 456666777664
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.004 Score=55.41 Aligned_cols=100 Identities=19% Similarity=0.270 Sum_probs=69.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHH-HHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPAL-KHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~-~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
++|.+|||..-++..+-..|+..++.+|+|++ +..+ ..+...+ ..+.+...|.... ...+++||+|+.-.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-----~~~~~~~~d~~~l---~fedESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-----PEMQMVEMDMDQL---VFEDESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-----cceEEEEecchhc---cCCCcceeEEEecC
Confidence 89999999999999998889999999999995 3322 2332211 2234444444332 33567899999754
Q ss_pred cCC----------CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVY----------IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~----------~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.+. +.......+..+.+++++||+.+....
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 442 223456677889999999999777654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0036 Score=52.12 Aligned_cols=94 Identities=20% Similarity=0.219 Sum_probs=58.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. .|||+|+|+|.++..++..+ .+++++|.++. ......... ...++.....|+-..............
T Consensus 29 ~~~~--~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~-----~~~~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 29 SEGD--TVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA-----SNPNVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp GTTS--EEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT-----TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCC--EEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh-----hcccceeeecchhccccHHhhcCCceE
Confidence 3566 99999999999999999888 49999999994 333333222 234567888776655432222234556
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
|+++-+ |. .-..++..+...-+.
T Consensus 101 vv~NlP-y~--is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 101 VVGNLP-YN--ISSPILRKLLELYRF 123 (262)
T ss_dssp EEEEET-GT--GHHHHHHHHHHHGGG
T ss_pred EEEEec-cc--chHHHHHHHhhcccc
Confidence 776544 42 223455555554344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0038 Score=52.61 Aligned_cols=148 Identities=20% Similarity=0.189 Sum_probs=90.5
Q ss_pred eeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHH
Q 026858 32 SVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHN 108 (232)
Q Consensus 32 ~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n 108 (232)
.+++.+-.++..+.. ..++. .|||+.+++|.=+..++.. +.+.+++.|+++ -+..+..|
T Consensus 68 ~vQd~sS~l~~~~L~----------------~~~~~--~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~ 129 (283)
T PF01189_consen 68 YVQDESSQLVALALD----------------PQPGE--RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKEN 129 (283)
T ss_dssp EEHHHHHHHHHHHHT----------------TTTTS--EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHH
T ss_pred Eeccccccccccccc----------------ccccc--cccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHH
Confidence 466666666665543 23667 8999999999977777765 345999999998 47788888
Q ss_pred HHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-------c---------------cHHHHHHHHHHhh
Q 026858 109 LKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-------E---------------SAAQLVRAMEALV 166 (232)
Q Consensus 109 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-------~---------------~~~~~l~~l~~~l 166 (232)
+++.+.. .+.....|...... ......||.|++-.+.... + .-..++++..+.+
T Consensus 130 ~~r~g~~---~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~ 205 (283)
T PF01189_consen 130 LKRLGVF---NVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLL 205 (283)
T ss_dssp HHHTT-S---SEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCE
T ss_pred HHhcCCc---eEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhh
Confidence 8776533 23444333222210 0112359999984433211 1 2456778889999
Q ss_pred ----CCCcEEEEEEeecChhH-HHHHHHHHh--cCceEEEec
Q 026858 167 ----ADDGVVLLGYQLRSPEA-HKLFWEMCA--EVFLIEKVP 201 (232)
Q Consensus 167 ----~pgG~l~i~~~~r~~~~-~~~~~~~~~--~~f~~~~~~ 201 (232)
+|||+++.++-.-.+.. +......++ ..|....+.
T Consensus 206 ~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~~~ 247 (283)
T PF01189_consen 206 NIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVPIP 247 (283)
T ss_dssp HHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEECCE
T ss_pred cccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 99999999864433322 222222233 256665544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.033 Score=43.75 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=69.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc----cccC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ----INAL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~----~~~~ 136 (232)
..++. +|||+||.+|..+..+.+. +.+.|.++|+-... . ..+-..+...|+.+... ++..
T Consensus 67 l~p~~--~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------p-----~~Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPED--TVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------P-----PEGATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCC--EEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------C-----CCCcccccccccCCHHHHHHHHHhC
Confidence 34777 9999999999999888765 45589999974310 0 00001122224444331 1111
Q ss_pred -CCCccEEEEcccCCCc-----ccHHHHHHHHHHh-------hCCCcEEEEEEeecChhHHHHHHHHHhcCce-EEEec
Q 026858 137 -KPPFDLVIAADVVYIE-----ESAAQLVRAMEAL-------VADDGVVLLGYQLRSPEAHKLFWEMCAEVFL-IEKVP 201 (232)
Q Consensus 137 -~~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~-------l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~-~~~~~ 201 (232)
....|+|++ +..... .+....++-+..+ +.|+|.+++-...-. ....|...+.+.|+ ++.+.
T Consensus 133 p~r~VdvVlS-DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~--e~~~l~r~l~~~f~~Vk~vK 208 (232)
T KOG4589|consen 133 PNRPVDVVLS-DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS--EEALLQRRLQAVFTNVKKVK 208 (232)
T ss_pred CCCcccEEEe-ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC--chHHHHHHHHHHhhhcEeeC
Confidence 235899986 444322 3455555555443 379999887543222 24566666766674 55554
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0038 Score=53.40 Aligned_cols=109 Identities=21% Similarity=0.303 Sum_probs=70.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c-c
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N-A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~-~ 135 (232)
.+..+ +|||+|.|+|.-...+... ....++.++.|+.+...-..+..|. .....+|...+-. + .
T Consensus 111 dfapq--siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv-------~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 111 DFAPQ--SILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV-------STEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred CcCcc--hhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc-------ccccCCCCCCccchhccCCC
Confidence 55667 8999999998654443332 2346777778876655555555543 2223444443210 0 1
Q ss_pred CCCCccEEEEcccCC---CcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 136 LKPPFDLVIAADVVY---IEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
....|+++++.+-+. ....+...++.+..+++|||.++++...-.
T Consensus 182 ~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 182 AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 234689888877664 334566688999999999999999986554
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.03 Score=47.03 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=66.5
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|+||.||.|.++..+.+.|+..+.++|+++. ....+. |.+.. ....|+.+..... ..+.+|+++.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~----N~~~~-----~~~~Di~~~~~~~-~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEA----NFPNK-----LIEGDITKIDEKD-FIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHH----hCCCC-----CccCccccCchhh-cCCCCCEEEeCCC
Confidence 79999999999998888888878899999993 333333 33211 1122222222111 1346999998776
Q ss_pred CCC----------cccHHHHHHHHHHhhCC-CcEEEEEEeecC------hhHHHHHHHHHhc-CceEEE
Q 026858 149 VYI----------EESAAQLVRAMEALVAD-DGVVLLGYQLRS------PEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 149 ~~~----------~~~~~~~l~~l~~~l~p-gG~l~i~~~~r~------~~~~~~~~~~~~~-~f~~~~ 199 (232)
... .+....++....++++. .-.+++...... ......+.+.+.+ +|.+..
T Consensus 72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 72 CQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred ChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEE
Confidence 631 12334455555554421 223455443222 1234455555554 776543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0056 Score=51.59 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=65.4
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHH---hcCCCC---------------CCce--------E
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLK---RNKPVL---------------NKSL--------K 121 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~---~~~~~~---------------~~~i--------~ 121 (232)
+.+||-=|||.|.++..+|..|. .+-+-+.|.-|..+..-+. .+...+ .+++ .
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 56899999999999999999988 7777777763332222111 110000 0000 0
Q ss_pred E------------EEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 122 T------------SVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 122 ~------------~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
. ...|+..--..+...+.||+|+.+..+.-.+++-..+.++.++|+|||..+=.
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEec
Confidence 0 00110000000111346999999977777788889999999999999986543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0036 Score=53.00 Aligned_cols=75 Identities=16% Similarity=0.060 Sum_probs=48.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~ 139 (232)
.++. .+||.+||.|..+..++... ..+|+++|.++. +..++..+.. ..++.+...++.+....... ..+
T Consensus 18 ~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~l~~~~~~ 90 (296)
T PRK00050 18 KPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEVLAEGLGK 90 (296)
T ss_pred CCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHHHHcCCCc
Confidence 3667 99999999999999888762 359999999994 5555443322 23466666665543221111 125
Q ss_pred ccEEEE
Q 026858 140 FDLVIA 145 (232)
Q Consensus 140 fD~Ii~ 145 (232)
+|.|++
T Consensus 91 vDgIl~ 96 (296)
T PRK00050 91 VDGILL 96 (296)
T ss_pred cCEEEE
Confidence 777775
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.044 Score=48.05 Aligned_cols=133 Identities=17% Similarity=0.113 Sum_probs=83.0
Q ss_pred CCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc
Q 026858 57 PYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 57 ~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~ 133 (232)
|+.++...++. +|||..+-+|.=+.++|.. +-+.+++.|.+. -+.....|+.+.+.. .......|-.....-
T Consensus 233 pv~aL~Pq~gE--RIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~---ntiv~n~D~~ef~~~ 307 (460)
T KOG1122|consen 233 PVMALDPQPGE--RILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT---NTIVSNYDGREFPEK 307 (460)
T ss_pred eeeecCCCCCC--eecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC---ceEEEccCccccccc
Confidence 45555567888 9999999998866555543 455899999997 477778888776622 123344433221111
Q ss_pred ccCCCCccEEEEcccCCC------c------c----------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHH
Q 026858 134 NALKPPFDLVIAADVVYI------E------E----------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC 191 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~------~------~----------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~ 191 (232)
-..++||-|++-.+... . . .-..++....+++++||+|+.++-.-.....+...+.+
T Consensus 308 -~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~ya 386 (460)
T KOG1122|consen 308 -EFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYA 386 (460)
T ss_pred -ccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHH
Confidence 12347999997444322 1 1 23456666677779999999987666655445454444
Q ss_pred hcCc
Q 026858 192 AEVF 195 (232)
Q Consensus 192 ~~~f 195 (232)
-.++
T Consensus 387 L~K~ 390 (460)
T KOG1122|consen 387 LKKR 390 (460)
T ss_pred HHhC
Confidence 3333
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=44.71 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-cCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-ALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~fD~I 143 (232)
.+. +|+-|||=+-...+.-......+++..|++. .... ..++ .+.-.|.+.+...+ ...++||+|
T Consensus 25 ~~~--~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~----~~~~-~F~fyD~~~p~~~~~~l~~~~d~v 90 (162)
T PF10237_consen 25 DDT--RIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQ----FGGD-EFVFYDYNEPEELPEELKGKFDVV 90 (162)
T ss_pred CCC--EEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHh----cCCc-ceEECCCCChhhhhhhcCCCceEE
Confidence 446 8999999664433333112334899999987 1111 1112 45667777665543 235689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+-+++...+.+.....++..++++++.+++++...
T Consensus 91 v~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 91 VIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 998888777778888889999999999999987544
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0013 Score=54.43 Aligned_cols=123 Identities=18% Similarity=0.090 Sum_probs=73.2
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALK 106 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~ 106 (232)
..+|..+|++++.|.+++.+.+. ..++. ++.++|||.+...+..++.+. .+...|...-.....
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d-------------~~~~~--~v~~l~~gi~~~~~~~a~~~~-~v~~~~~~~~~~~~l 128 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPD-------------LSSEL--TVEELGCDIALKHVLAARVPD-CVVTLDSLRCAGLLL 128 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcc-------------ccccc--chHhhccCHHHHHHHHHhccc-ceecCCccCcHHHHH
Confidence 56889999999999999999877 45677 999999999998866777643 333333222122222
Q ss_pred HHHHhcCCC--CCCceEEEEeecCCCcccc-cCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 107 HNLKRNKPV--LNKSLKTSVLYWNNQDQIN-ALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 107 ~n~~~~~~~--~~~~i~~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.....+... ...+-.....+|..-...+ .....+|+|+..++.|. .....+++.+..+|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 129 EEIILLSRDLSLEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred HHHHhccccccccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 222211111 1111111111111111000 01123899999999998 77777888887766
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0043 Score=54.49 Aligned_cols=56 Identities=11% Similarity=0.255 Sum_probs=42.2
Q ss_pred CCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTS 123 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~ 123 (232)
+....|||||+|||++++.+++.|+..|++++.=. +...+++-...|+ ..++|.+.
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng--~SdkI~vI 121 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG--MSDKINVI 121 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC--Cccceeee
Confidence 34568999999999999999999999999999765 5566666555555 33444443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.01 Score=50.78 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=66.1
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
..+|+|.|.|.++-.+.. .+.++-+++.+. .+...+.+.. -+ |.....|.-+. ...-|+|+..-+
T Consensus 180 ~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g------V~~v~gdmfq~------~P~~daI~mkWi 245 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG------VEHVAGDMFQD------TPKGDAIWMKWI 245 (342)
T ss_pred eEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC------cceeccccccc------CCCcCeEEEEee
Confidence 899999999998877776 455788888775 3444444432 11 22222222111 234689999999
Q ss_pred CCCc--ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIE--ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++++ ++..++++++++.|+|+|.+++.+.
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9865 4688899999999999999999864
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.18 Score=40.62 Aligned_cols=119 Identities=11% Similarity=0.088 Sum_probs=76.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
++.|+||--|.+...+.+. .+..+++.|+++ -+..+.++...+. +..++....+|.-..- .....+|+|+.+.
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l---~~~d~~d~ivIAG 93 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVL---ELEDEIDVIVIAG 93 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCcccc---CccCCcCEEEEeC
Confidence 6999999999999988876 567999999998 4777788887776 4455555555432221 1234689998765
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEK 199 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~ 199 (232)
+ ....+...++.-..-++.--+++ ..++.++. .+.+.+. .+|.+..
T Consensus 94 M--GG~lI~~ILee~~~~l~~~~rlI-LQPn~~~~---~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 M--GGTLIREILEEGKEKLKGVERLI-LQPNIHTY---ELREWLSANSYEIKA 140 (226)
T ss_pred C--cHHHHHHHHHHhhhhhcCcceEE-ECCCCCHH---HHHHHHHhCCceeee
Confidence 3 33455666666666666443444 44555533 3444444 3565543
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=51.72 Aligned_cols=101 Identities=23% Similarity=0.266 Sum_probs=70.5
Q ss_pred CcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 69 RRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
.+|||.=+|||+=++..+.. +..+|++-|+|+ +++.+++|++.|+... .++.....|...-.. .....||+|=.
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~-~~~~v~~~DAn~ll~--~~~~~fD~IDl 127 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLED-ERIEVSNMDANVLLY--SRQERFDVIDL 127 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SG-CCEEEEES-HHHHHC--HSTT-EEEEEE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccC-ceEEEehhhHHHHhh--hccccCCEEEe
Confidence 48999999999999888766 567999999999 6889999999998332 145555554332211 12457999986
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++. ...+++....+.++.||.+.+..
T Consensus 128 -DPfG---Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 -DPFG---SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ---SS-----HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCC---CccHhHHHHHHHhhcCCEEEEec
Confidence 5554 44678889999999999999973
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=47.49 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCCCCcEEEeCccccHHHHHH--HHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---CCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAF--YLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---LKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~l--a~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---~~~ 138 (232)
+++..++||||.|.-.+==.+ -..|. +.+++|+++ .+..++.++..|. .+...|....- -.....+++ ..+
T Consensus 76 ~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~-~l~~~I~lr~q-k~~~~if~giig~nE 152 (292)
T COG3129 76 PGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANP-GLERAIRLRRQ-KDSDAIFNGIIGKNE 152 (292)
T ss_pred CcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCc-chhhheeEEec-cCccccccccccccc
Confidence 445669999987763211111 12367 999999999 4777777776662 23333333322 111111222 345
Q ss_pred CccEEEEcccCCC
Q 026858 139 PFDLVIAADVVYI 151 (232)
Q Consensus 139 ~fD~Ii~~~~~~~ 151 (232)
.||.++|++++|.
T Consensus 153 ~yd~tlCNPPFh~ 165 (292)
T COG3129 153 RYDATLCNPPFHD 165 (292)
T ss_pred eeeeEecCCCcch
Confidence 7999999999984
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.054 Score=40.63 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=62.6
Q ss_pred cEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CCccEEEEcccCCCc---------ccHHHHHH
Q 026858 92 DIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PPFDLVIAADVVYIE---------ESAAQLVR 160 (232)
Q Consensus 92 ~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~~~~~~---------~~~~~~l~ 160 (232)
+|++.|+-+ ++..+++.++... +..++.+..-...+.... .+ ++.|.++.+-..... +.--.+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 589999998 6888888777765 334566666655444321 22 379999986655322 23445667
Q ss_pred HHHHhhCCCcEEEEEEeecChhHH------HHHHHHHh-cCceEEEec
Q 026858 161 AMEALVADDGVVLLGYQLRSPEAH------KLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~~~~~------~~~~~~~~-~~f~~~~~~ 201 (232)
.+.++|+|||.+.++.+..++... ..|.+.+. +.|++....
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~ 124 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ 124 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred HHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 777788999999998776664332 33344343 468776654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.01 Score=42.22 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=26.4
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcch
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s 99 (232)
...+|||||+|++...+.+.|+ .=.|+|.-
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 3799999999999999999888 78888853
|
; GO: 0008168 methyltransferase activity |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.071 Score=46.14 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=75.9
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHH---hcCCC-CCCceEEEEeecCCCcccccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLK---RNKPV-LNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~---~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+||=+|.|-|+....+.+.+ ..+++.+|.+| +++...+|.. .|... -..++....-|..+.. ......||.|
T Consensus 292 ~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl--r~a~~~fD~v 369 (508)
T COG4262 292 SVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL--RTAADMFDVV 369 (508)
T ss_pred eEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH--HhhcccccEE
Confidence 89999999999999998884 78999999999 4555554332 22221 2344555444322221 1123479999
Q ss_pred EEcccCCCccc-----HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHH---HHHh-cCceEEEe
Q 026858 144 IAADVVYIEES-----AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW---EMCA-EVFLIEKV 200 (232)
Q Consensus 144 i~~~~~~~~~~-----~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~---~~~~-~~f~~~~~ 200 (232)
|..-+=-.... -..+..-+++.++++|.+++...... .+-+.|| +.++ .+|.+...
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y-~tp~vfw~i~aTik~AG~~~~Py 434 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY-FTPRVFWRIDATIKSAGYRVWPY 434 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc-cCCceeeeehhHHHhCcceeeee
Confidence 97322111111 13455667888999999988643332 1223343 3444 36665544
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.048 Score=43.62 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=54.5
Q ss_pred cEEEeCccccHHHHHHHHh-----CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-----CCC
Q 026858 70 RAIELGAGCGAAGMAFYLL-----GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-----KPP 139 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-----~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-----~~~ 139 (232)
.|+|+|.-.|-..+..|.. +..+|+++|++... ..+...+. .....+|++...+..+.+..... ...
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~-~~~~a~e~--hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP-HNRKAIES--HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG------TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch-hchHHHhh--ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 8999999998877666542 33499999996410 00111111 11346789999887766543221 123
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
..+|+ -|.-|.....-..++....++++|+++++-
T Consensus 112 ~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 112 PVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp SEEEE-ESS----SSHHHHHHHHHHT--TT-EEEET
T ss_pred ceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 44555 466666677778888899999999999985
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.063 Score=46.22 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=58.4
Q ss_pred ccCCCCCcEEEeCcc-ccHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAG-CGAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcG-tG~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..+++ +|+=.|+| .|..++.+|+ .++ +|+++|.++. .+.+++ -+.+ .+ .++.+.+......+.
T Consensus 164 ~~pG~--~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~----lGAd-----~~--i~~~~~~~~~~~~~~ 229 (339)
T COG1064 164 VKPGK--WVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKK----LGAD-----HV--INSSDSDALEAVKEI 229 (339)
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHH----hCCc-----EE--EEcCCchhhHHhHhh
Confidence 45788 88888887 2557788887 486 9999999983 222222 2211 11 122211111122234
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
||+|+..-+ ...+....+.|+++|++.++...
T Consensus 230 ~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 230 ADAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CcEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 999997532 45677778899999999887543
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.18 Score=41.20 Aligned_cols=140 Identities=14% Similarity=0.170 Sum_probs=82.0
Q ss_pred cCeeEEEEEcCCCCCccceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CC
Q 026858 14 RDALLSIQQDNGSMHVGTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GL 90 (232)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~ 90 (232)
..+.+.++...+ ..-.++|.--.- |+.-+.--. ..++..++. .||-||+++|..-.+.+.. .-
T Consensus 116 gEkRisv~~~~~--kvEyRVWnPfrSKLAA~I~gGv----------dnihikpGs--KVLYLGAasGttVSHvSDiVGpe 181 (317)
T KOG1596|consen 116 GEKRISVENEDG--KVEYRVWNPFRSKLAAGILGGV----------DNIHIKPGS--KVLYLGAASGTTVSHVSDIVGPE 181 (317)
T ss_pred CceEEEeecCCC--cEEEEEeChHHHHHHHHhhcCc----------cceeecCCc--eEEEeeccCCceeehhhcccCCC
Confidence 344556655533 777899984332 555444222 233377999 9999999999877666654 23
Q ss_pred CcEEEEcchhH----HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhh
Q 026858 91 ADIVLTDISPV----MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALV 166 (232)
Q Consensus 91 ~~v~~~D~s~~----~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l 166 (232)
.-|++++.|.. +.++++ ...| |....-|...+....-.-+..|+|++ |+. .+.....+.-+....|
T Consensus 182 G~VYAVEfs~rsGRdL~nmAk-kRtN-------iiPIiEDArhP~KYRmlVgmVDvIFa-Dva-qpdq~RivaLNA~~FL 251 (317)
T KOG1596|consen 182 GCVYAVEFSHRSGRDLINMAK-KRTN-------IIPIIEDARHPAKYRMLVGMVDVIFA-DVA-QPDQARIVALNAQYFL 251 (317)
T ss_pred ceEEEEEecccchHHHHHHhh-ccCC-------ceeeeccCCCchheeeeeeeEEEEec-cCC-Cchhhhhhhhhhhhhh
Confidence 36899998862 222222 1122 12222222222221112235687775 433 3445566667888999
Q ss_pred CCCcEEEEEEe
Q 026858 167 ADDGVVLLGYQ 177 (232)
Q Consensus 167 ~pgG~l~i~~~ 177 (232)
++||.++++.+
T Consensus 252 k~gGhfvisik 262 (317)
T KOG1596|consen 252 KNGGHFVISIK 262 (317)
T ss_pred ccCCeEEEEEe
Confidence 99999999754
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.84 Score=40.16 Aligned_cols=141 Identities=17% Similarity=0.066 Sum_probs=90.2
Q ss_pred EeecCeeEEEEEcCCCCC-ccceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh
Q 026858 11 LPIRDALLSIQQDNGSMH-VGTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL 88 (232)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~ 88 (232)
+.+..++|+++..|.... .-.+.|+++-. |.+++..... .. +||=|+=.-|.++..++..
T Consensus 4 ~~~~~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~~~----------------~~--~~~i~nd~fGal~~~l~~~ 65 (378)
T PRK15001 4 LDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEI----------------RG--PVLILNDAFGALSCALAEH 65 (378)
T ss_pred cccCCceeEEEECCCCCCcCcccccccHHHHHHHHHhhccc----------------CC--CEEEEcCchhHHHHHHHhC
Confidence 345568999999998555 44899999875 4555544221 13 6999999999999999865
Q ss_pred CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 89 GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 89 ~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
+. ....|.--.....+.|...|+..- ..+..... .+...+.+|+|+.--+ =.-...+..+..+.+++.|
T Consensus 66 ~~--~~~~ds~~~~~~~~~n~~~n~~~~-~~~~~~~~-------~~~~~~~~d~vl~~~P-K~~~~l~~~l~~l~~~l~~ 134 (378)
T PRK15001 66 KP--YSIGDSYISELATRENLRLNGIDE-SSVKFLDS-------TADYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTS 134 (378)
T ss_pred CC--CeeehHHHHHHHHHHHHHHcCCCc-ccceeecc-------cccccCCCCEEEEEeC-CCHHHHHHHHHHHHhhCCC
Confidence 44 233453334567888988886321 11222211 1123456999986322 2224566677888889999
Q ss_pred CcEEEEEEeecC
Q 026858 169 DGVVLLGYQLRS 180 (232)
Q Consensus 169 gG~l~i~~~~r~ 180 (232)
|+.+++.....+
T Consensus 135 ~~~ii~g~~~k~ 146 (378)
T PRK15001 135 DTRIIAGAKARD 146 (378)
T ss_pred CCEEEEEEecCC
Confidence 999887766554
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.095 Score=46.00 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=14.9
Q ss_pred CCcEEEeCccccHHHHHH
Q 026858 68 RRRAIELGAGCGAAGMAF 85 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~l 85 (232)
+.+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 448999999999887655
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.17 Score=46.15 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=60.2
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCC-----------
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQ----------- 130 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~----------- 130 (232)
.++. +|+=+|||. |+.++..|+. |+ .|+++|.++. ..+..+..+. .+...+....
T Consensus 163 ~pg~--kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~---rle~aeslGA------~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 163 VPPA--KVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPE---VAEQVESMGA------EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred cCCC--EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHH---HHHHHHHcCC------eEEEeccccccccccchhhhc
Confidence 3566 999999999 8888887766 88 8999999983 2222222221 1111111100
Q ss_pred -cc--------cccCCCCccEEEEcccCCCcccHHHH-HHHHHHhhCCCcEEEEEEe
Q 026858 131 -DQ--------INALKPPFDLVIAADVVYIEESAAQL-VRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 131 -~~--------~~~~~~~fD~Ii~~~~~~~~~~~~~~-l~~l~~~l~pgG~l~i~~~ 177 (232)
.. +....+.+|+||.+...-.... +.+ .+...+.++|||.++....
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~a-P~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPA-PKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccC-cchHHHHHHHhcCCCCEEEEEcc
Confidence 00 0000135999997654322222 234 4889999999999887643
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.01 Score=50.62 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=69.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HH-------HHHHHHHhcCCCCCCceEEEEeecCCCccccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MP-------ALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~-------~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~ 135 (232)
.+|+ -|.|=-.|||.+-+.+|+.|+ .|.|+|++-. +. ....|.+.-+. ...-+.+...|..+..--
T Consensus 207 ~pGd--ivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn~~~r-- 280 (421)
T KOG2671|consen 207 KPGD--IVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSNPPLR-- 280 (421)
T ss_pred CCCC--EEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccCcchh--
Confidence 4788 999999999999999999998 9999999963 33 23334333321 112244555555554421
Q ss_pred CCCCccEEEEcccCCCcc----------------------------------cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 136 LKPPFDLVIAADVVYIEE----------------------------------SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~----------------------------------~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
....||.|||. +.|... .+..++.-..+.|..||++.+-.+
T Consensus 281 sn~~fDaIvcD-PPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 SNLKFDAIVCD-PPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hcceeeEEEeC-CCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 12369999974 444221 245556666777788999887654
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.021 Score=50.92 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=74.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~f 140 (232)
..++++|||.=|+||+-++..|+. +..++++-|.++ ++...+.|++.|. ....++....|.+..-. .......|
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhcccccccc
Confidence 444569999999999999888876 677999999998 6888999999885 22334444443322111 11123579
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|=+ |++.. ...++....+.++.||.+++..
T Consensus 185 DvIDL-DPyGs---~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDL-DPYGS---PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEec-CCCCC---ccHHHHHHHHHhhcCCEEEEEe
Confidence 99986 55543 3457888888999999999963
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.045 Score=46.54 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=60.7
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-----c
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI-----N 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~-----~ 134 (232)
..+. +||=+|+|+ |+++...|+. |+.+|+.+|.++. ++.+++ + +.. .+....-.. .... .
T Consensus 168 k~Gs--~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-----~~~~~~~~~~~~~~~~~v~~ 236 (354)
T KOG0024|consen 168 KKGS--KVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-----VTDPSSHKSSPQELAELVEK 236 (354)
T ss_pred ccCC--eEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-----EEeeccccccHHHHHHHHHh
Confidence 3677 999999999 9999888876 9999999999984 333333 2 111 011110000 0110 0
Q ss_pred cCC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
... ..+|+.+-+. -.+..++..-..++.||.+.++.
T Consensus 237 ~~g~~~~d~~~dCs------G~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 237 ALGKKQPDVTFDCS------GAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred hccccCCCeEEEcc------CchHHHHHHHHHhccCCEEEEec
Confidence 111 2488888653 44567777888999999977764
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.076 Score=44.16 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=59.0
Q ss_pred cEEEeCccccH--HHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---cCCCCcc-
Q 026858 70 RAIELGAGCGA--AGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---ALKPPFD- 141 (232)
Q Consensus 70 ~VLElGcGtG~--~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~~fD- 141 (232)
.+||||||--. .....|+. .-.+|+.+|.++++..-.+.+..... .....+...|..+....- ...+-+|
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--RGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--TSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--CccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 89999999522 33444443 33399999999964333333322221 123678888887765321 1111222
Q ss_pred ----EEEEcccCCC---cccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 142 ----LVIAADVVYI---EESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ----~Ii~~~~~~~---~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
-+++..++++ .++...++..+...|.||..+.++.....
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 3445566653 35789999999999999999999876543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.029 Score=46.80 Aligned_cols=95 Identities=11% Similarity=0.046 Sum_probs=58.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
.+. .++|+|||.|-....- -.+ .+++.|++.-+....+ ..+. . .....|. ...+....+||.++
T Consensus 45 ~gs--v~~d~gCGngky~~~~--p~~-~~ig~D~c~~l~~~ak--~~~~-~-----~~~~ad~---l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGS--VGLDVGCGNGKYLGVN--PLC-LIIGCDLCTGLLGGAK--RSGG-D-----NVCRADA---LKLPFREESFDAAL 108 (293)
T ss_pred Ccc--eeeecccCCcccCcCC--Ccc-eeeecchhhhhccccc--cCCC-c-----eeehhhh---hcCCCCCCccccch
Confidence 356 8999999998422110 123 6788887763222221 1111 0 1222222 22333456899999
Q ss_pred EcccCCCcc---cHHHHHHHHHHhhCCCcEEEEE
Q 026858 145 AADVVYIEE---SAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 145 ~~~~~~~~~---~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+..++++.. -...+++.+.+.++|||..++.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999998654 4678899999999999997764
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.1 Score=45.27 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=58.6
Q ss_pred cEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCC-CccEEE
Q 026858 70 RAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKP-PFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~-~fD~Ii 144 (232)
+|+=+|||+ |+++..+++. |+.+++++|.++. ++.+++ ..... ............. .....+ .+|+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~---~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE---AGGAD----VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH---hCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 899999999 9998777766 8889999999984 333322 11111 0000000000000 011122 599999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
-+.. ....+..+.++++++|++.+...
T Consensus 244 e~~G------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 244 EAVG------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred ECCC------CHHHHHHHHHHhcCCCEEEEEec
Confidence 6543 35578889999999999988753
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.56 Score=40.31 Aligned_cols=96 Identities=19% Similarity=0.158 Sum_probs=54.5
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+++ +||=.|||. |..++.+|+. |+.+++++|.++. ++.++ ..+... -+....-++. ......+.+|
T Consensus 169 ~g~--~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~----~lGa~~--vi~~~~~~~~---~~~~~~g~~D 237 (343)
T PRK09880 169 QGK--RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR----EMGADK--LVNPQNDDLD---HYKAEKGYFD 237 (343)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH----HcCCcE--EecCCcccHH---HHhccCCCCC
Confidence 567 888899876 7777777765 7757999998873 22221 122110 0000000110 0001123589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+-+- .. ...+....++++++|++++...
T Consensus 238 ~vid~~--G~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 238 VSFEVS--GH----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred EEEECC--CC----HHHHHHHHHHhhcCCEEEEEcc
Confidence 998542 21 3456777889999999988653
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.2 Score=42.52 Aligned_cols=141 Identities=19% Similarity=0.189 Sum_probs=71.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV 149 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~ 149 (232)
+++||.||.|.+++.+.+.|...+.++|+++ .+......|.. .....|....... ..++.+|+++.+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~---~a~~~y~~N~~------~~~~~Di~~~~~~-~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDP---DACETYKANFP------EVICGDITEIDPS-DLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSH---HHHHHHHHHHT------EEEESHGGGCHHH-HHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCH---HHHHhhhhccc------ccccccccccccc-cccccceEEEeccCC
Confidence 7999999999999999999987899999999 33333333321 2333344333321 111159999987765
Q ss_pred CCcc----------cHHHHHHHHHH---hhCCCcEEEEEEeecC------hhHHHHHHHHHhc-CceEEEecCCCCCCCC
Q 026858 150 YIEE----------SAAQLVRAMEA---LVADDGVVLLGYQLRS------PEAHKLFWEMCAE-VFLIEKVPHEDLHPDY 209 (232)
Q Consensus 150 ~~~~----------~~~~~l~~l~~---~l~pgG~l~i~~~~r~------~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~ 209 (232)
...+ ....++..+.+ .++|. +++...... ......+.+.+.+ +|.+....-. ..+|
T Consensus 72 Q~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vln--a~~y 147 (335)
T PF00145_consen 72 QGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVLN--AADY 147 (335)
T ss_dssp TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEEE--GGGG
T ss_pred ceEeccccccccccccchhhHHHHHHHhhccce--EEEecccceeeccccccccccccccccccceeehhcccc--HhhC
Confidence 3211 12223333333 34664 444443332 1234555555654 7766533211 1223
Q ss_pred CC--CceEEEEEEecCc
Q 026858 210 GY--EETDVYILRKKKK 224 (232)
Q Consensus 210 ~~--~~~~l~~~~~~~~ 224 (232)
.. .+.++|.+..++.
T Consensus 148 GvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 148 GVPQNRERVFIVGIRKD 164 (335)
T ss_dssp TSSBE-EEEEEEEEEGG
T ss_pred CCCCceeeEEEEEECCC
Confidence 33 3455666665543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.24 Score=37.52 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=59.0
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+.+|||+|-|.+-+.+++.|....+++++++. +.+.+-...+.+ +..+..|..-|.=..+ -..|..++..
T Consensus 75 klvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK~d-----l~dy~~vviF-- 145 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWKVD-----LRDYRNVVIF-- 145 (199)
T ss_pred cEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhhcc-----ccccceEEEe--
Confidence 79999999999999999998779999999995 445544444433 3344445444421111 1223333321
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
...+..+.+...+..-+..+.+++-+
T Consensus 146 -gaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 146 -GAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -ehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 12234455666667677777777654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.22 Score=42.98 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCCcEEEeCccccHHHHHHHHh------------C------CCcEEEEcch
Q 026858 67 TRRRAIELGAGCGAAGMAFYLL------------G------LADIVLTDIS 99 (232)
Q Consensus 67 ~~~~VLElGcGtG~~s~~la~~------------~------~~~v~~~D~s 99 (232)
++.+|+|+||.+|..++.+... + . +|+..|..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~-~v~~nDlP 65 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEF-QVFFNDLP 65 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EE-EEEEEE-T
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeE-EEEeCCCC
Confidence 3459999999999988765432 1 3 89999975
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.021 Score=47.89 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=68.0
Q ss_pred CCCCCcEEEeCccccHHHH-HHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGM-AFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~-~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+. .|.|+=+|.|..++ .+.+.|++.|++.|.++ .++..++|++.|+... +......|-. ....+...|.
T Consensus 194 ~~e--viVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~--r~~i~~gd~R----~~~~~~~Adr 265 (351)
T KOG1227|consen 194 DGE--VIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMD--RCRITEGDNR----NPKPRLRADR 265 (351)
T ss_pred ccc--hhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHH--HHHhhhcccc----ccCccccchh
Confidence 446 89999999999999 66777999999999999 6899999999886332 2222222211 1123456888
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCC-CcEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVAD-DGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~p-gG~l~i~ 175 (232)
|.+.-.......+..++ ++|+| ||-++.+
T Consensus 266 VnLGLlPSse~~W~~A~----k~Lk~eggsilHI 295 (351)
T KOG1227|consen 266 VNLGLLPSSEQGWPTAI----KALKPEGGSILHI 295 (351)
T ss_pred eeeccccccccchHHHH----HHhhhcCCcEEEE
Confidence 88876666666777654 45555 4535554
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.23 Score=42.98 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=68.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~ 146 (232)
+|+|--+|||+=++..|.. +..++++-|+|+ +++.++.|...|.... ......|. ..+.. ....||+|=.
T Consensus 55 ~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~---~~v~n~DA---N~lm~~~~~~fd~IDi- 127 (380)
T COG1867 55 RVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED---AEVINKDA---NALLHELHRAFDVIDI- 127 (380)
T ss_pred EEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc---ceeecchH---HHHHHhcCCCccEEec-
Confidence 9999999999999888866 544899999999 6899999999983221 12222221 11111 2357998875
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++.. ..+++....+.++.+|.+.+..
T Consensus 128 DPFGS---PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGS---PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCC---CchHHHHHHHHhhcCCEEEEEe
Confidence 66653 3557777888888899999864
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.15 Score=41.68 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=41.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHH----HHHHhcCCC---CCCceEEEEeecCCCcccccCCCCccE
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALK----HNLKRNKPV---LNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~----~n~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+|||.-+|.|.-++.+|..|+ +|++++.|+.+..+. ++....... ...+++....|...... ....+||+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s~DV 154 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNSFDV 154 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS--SE
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCCCCE
Confidence 899999999999999998898 899999999543222 222222111 12456666665444332 23468999
Q ss_pred EEEcccC
Q 026858 143 VIAADVV 149 (232)
Q Consensus 143 Ii~~~~~ 149 (232)
|..-+.+
T Consensus 155 VY~DPMF 161 (234)
T PF04445_consen 155 VYFDPMF 161 (234)
T ss_dssp EEE--S-
T ss_pred EEECCCC
Confidence 9984443
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.14 E-value=2.7 Score=36.54 Aligned_cols=134 Identities=15% Similarity=0.103 Sum_probs=72.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh---C--CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc---
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL---G--LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI--- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~---~--~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~--- 133 (232)
..++. +|||+.+-+|.-+..+... . .+.+++-|.++. +....+...... ...+.....+.......
T Consensus 153 v~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 153 VKPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---SPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred cCCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---Ccceeeecccceeccccccc
Confidence 45778 9999999999977555443 2 127999999984 444444433221 11122222222222211
Q ss_pred ---ccCCCCccEEEEcccCCCcc-----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhH----
Q 026858 134 ---NALKPPFDLVIAADVVYIEE-----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEA---- 183 (232)
Q Consensus 134 ---~~~~~~fD~Ii~~~~~~~~~-----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~---- 183 (232)
+.....||-|++--+..... .--.++..-.++|++||+++.++-.-++..
T Consensus 228 ~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred cCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 11123699999722221110 122355667778899999999875444432
Q ss_pred HHHHHHHHhcCceEEEec
Q 026858 184 HKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 184 ~~~~~~~~~~~f~~~~~~ 201 (232)
.+..++.....+.+....
T Consensus 308 V~~~L~~~~~~~~lv~~~ 325 (375)
T KOG2198|consen 308 VQEALQKVGGAVELVDVS 325 (375)
T ss_pred HHHHHHHhcCcccceeec
Confidence 333344444455554443
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.04 Score=42.13 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=67.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+.+=+|+..-..-..+.+.|+.+++.+++++. ++.-.++. + ..+...++.... ....++||.+.+...
T Consensus 4 ~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr------~---ssi~p~df~~~~--~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 4 SGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDR------L---SSILPVDFAKNW--QKYAGSFDFAASFSS 72 (177)
T ss_pred eEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccc------c---ccccHHHHHHHH--HHhhccchhhheech
Confidence 78888887666666677778889999998761 11110100 0 011111211111 113467888887555
Q ss_pred CCC-----------cccHHHHHHHHHHhhCCCcEEEEEEeecCh----hH----HHHHHHHHhcCceEEEec
Q 026858 149 VYI-----------EESAAQLVRAMEALVADDGVVLLGYQLRSP----EA----HKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 149 ~~~-----------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~----~~----~~~~~~~~~~~f~~~~~~ 201 (232)
+.+ +......+..++++||+||.+++..+...+ +. -...+.++-.+|++...-
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~i~tf 144 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEWIDTF 144 (177)
T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEEEeee
Confidence 522 123455788899999999999997542221 00 112244455677766553
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.39 Score=43.28 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=70.5
Q ss_pred CcEEEeCccccHHHHHHHHhCCC--cEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLA--DIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~--~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
.+|+|..+|.|.++-.+...+.- .|+-++..+.+.. +-..+ + .=...||... ++..+..||+|.+.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~v----IydRG--L----IG~yhDWCE~--fsTYPRTYDLlHA~ 434 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPV----IYDRG--L----IGVYHDWCEA--FSTYPRTYDLLHAD 434 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccCCCCcchh----hhhcc--c----chhccchhhc--cCCCCcchhheehh
Confidence 39999999999877766654321 2222221111111 11111 1 1123355432 34456789999998
Q ss_pred ccCC---CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecC
Q 026858 147 DVVY---IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 147 ~~~~---~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
..+. ..-.+..++-++-|+|+|+|.+++-+.. ....+..+.+.. .|++.....
T Consensus 435 ~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~---~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 435 GLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV---DVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred hhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH---HHHHHHHHHHHhCcceEEEEec
Confidence 7764 2346888999999999999999987642 234444454444 566665543
|
; GO: 0008168 methyltransferase activity |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.59 Score=36.16 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=45.0
Q ss_pred CCCccEEEEcccCCC-------------cccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 137 KPPFDLVIAADVVYI-------------EESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
...||.|+-+.|.-. ...+..+++.+.++|+++|.+.++-....+.......++.+ .++.+....
T Consensus 73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 457999999877654 12467788889999999999999876665422334444444 377765553
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.29 Score=40.30 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=43.2
Q ss_pred cEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|+|||||.=-+++..... ++ .|++.|++. .++....-....+. .......|..... .....|+.++-
T Consensus 108 sVlDigCGlNPlalp~~~~~~~a-~Y~a~DID~~~ve~l~~~l~~l~~----~~~~~v~Dl~~~~----~~~~~DlaLll 178 (251)
T PF07091_consen 108 SVLDIGCGLNPLALPWMPEAPGA-TYIAYDIDSQLVEFLNAFLAVLGV----PHDARVRDLLSDP----PKEPADLALLL 178 (251)
T ss_dssp EEEEET-TTCHHHHHTTTSSTT--EEEEEESBHHHHHHHHHHHHHTT-----CEEEEEE-TTTSH----TTSEESEEEEE
T ss_pred hhhhhhccCCceehhhcccCCCc-EEEEEeCCHHHHHHHHHHHHhhCC----CcceeEeeeeccC----CCCCcchhhHH
Confidence 8999999998888776654 45 999999998 45555554444332 2344444544332 23468999974
Q ss_pred c
Q 026858 147 D 147 (232)
Q Consensus 147 ~ 147 (232)
=
T Consensus 179 K 179 (251)
T PF07091_consen 179 K 179 (251)
T ss_dssp T
T ss_pred H
Confidence 3
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.027 Score=40.22 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=29.9
Q ss_pred CccEEEEcccCC------CcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVY------IEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~------~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+||+|+|-.+.- ..+.+..+++.+.++|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988773 3356888999999999999999985
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.3 Score=42.55 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=29.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
.+-+ .|+|+|+|.|.++..++.. |. .|.++|.|..
T Consensus 152 ~gi~--~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~ 187 (476)
T KOG2651|consen 152 TGID--QVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQR 187 (476)
T ss_pred cCCC--eeEEcCCCchHHHHHHhhccCc-eEEEeccchH
Confidence 3556 8999999999999999866 66 9999999863
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.3 Score=35.15 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=33.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNL 109 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~ 109 (232)
..++. ..+|.--|-|-.+..+... ..++++++|-++ ++..++...
T Consensus 21 ~~~~g--iyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 21 PKPDG--IYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred cCCCc--EEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 44667 9999999998888777655 244899999999 455554444
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.95 E-value=2.1 Score=39.01 Aligned_cols=104 Identities=13% Similarity=-0.018 Sum_probs=63.3
Q ss_pred cEEEeCccccHHHHHHHHh----C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc--ccCCCCcc
Q 026858 70 RAIELGAGCGAAGMAFYLL----G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI--NALKPPFD 141 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~----~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~~~fD 141 (232)
+|.|--||+|..-...+.. . ...++|.++++ ....++.|...++... .+.....+--..+.. ....+.||
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~--~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG--DANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc--cccccccccccCCcccccCCcccee
Confidence 8999999998755544432 1 13799999887 4777888887766321 111111111111111 11235699
Q ss_pred EEEEcccCC---Ccc----------------------cHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVY---IEE----------------------SAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~---~~~----------------------~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.|++++++. +.. .-...+.++...++|+|+.-++
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 999988774 110 2267788899999998876654
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.26 Score=40.69 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=29.0
Q ss_pred CCCcEEEeCccccHHHHHHHHh---------CCCcEEEEcchhHHHHHHHHH
Q 026858 67 TRRRAIELGAGCGAAGMAFYLL---------GLADIVLTDISPVMPALKHNL 109 (232)
Q Consensus 67 ~~~~VLElGcGtG~~s~~la~~---------~~~~v~~~D~s~~~~~~~~n~ 109 (232)
.+.+|+|+|+|+|.++..+.+. ..-+++.++.|+.+...+++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 3459999999999998766543 123899999999655444443
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.37 Score=38.42 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=28.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
.++. .|||-.||+|.+++.+.+.+- +++++|+++.
T Consensus 190 ~~gd--iVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~ 224 (231)
T PF01555_consen 190 NPGD--IVLDPFAGSGTTAVAAEELGR-RYIGIEIDEE 224 (231)
T ss_dssp -TT---EEEETT-TTTHHHHHHHHTT--EEEEEESSHH
T ss_pred ccce--eeehhhhccChHHHHHHHcCC-eEEEEeCCHH
Confidence 3677 999999999999999998886 9999999984
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.32 Score=42.11 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCcEEEeCccccHHHHHHHHh---------CCCcEEEEcchhHHHHHHHHHHhc
Q 026858 68 RRRAIELGAGCGAAGMAFYLL---------GLADIVLTDISPVMPALKHNLKRN 112 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~---------~~~~v~~~D~s~~~~~~~~n~~~~ 112 (232)
+..++|||+|+|.+...+.+. ...++..++.|+.+...+++....
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 447999999999988665442 234999999999766555544433
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.49 Score=37.81 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=56.9
Q ss_pred CCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcC----CCCCCceEEEEeecCCCcccccCCCC-
Q 026858 67 TRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNK----PVLNKSLKTSVLYWNNQDQINALKPP- 139 (232)
Q Consensus 67 ~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~----~~~~~~i~~~~~d~~~~~~~~~~~~~- 139 (232)
+++.+.|||||-|-+.+.++-. +-.-+.|.++-. +.++.+..++... ...-.++............--+..++
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 4568999999999988888866 333677777653 3334443332211 01112233333321111100001121
Q ss_pred -ccEEEEcccCCCcc------cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 -FDLVIAADVVYIEE------SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 -fD~Ii~~~~~~~~~------~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
-+..+..++.+... .-..++....-+|++||.++....
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 23333333222111 234567778889999999998763
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.5 Score=39.77 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=34.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKH 107 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~ 107 (232)
..++. .|||-.||+|.+++.+.+.+- +++|+|+++. .+.+.+
T Consensus 206 S~~GD--~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 206 SNPGD--IVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCC--EEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHH
Confidence 45788 999999999999999999886 9999999985 343333
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.43 E-value=1 Score=39.38 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=58.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEee-cCCCcccccC-C
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLY-WNNQDQINAL-K 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d-~~~~~~~~~~-~ 137 (232)
..++. +||.+|||+ |..+..+|+. |..+++++|.++. ...++. ... . ..+.....+ +.... .... .
T Consensus 182 ~~~g~--~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~----~~~-~-~vi~~~~~~~~~~~l-~~~~~~ 252 (386)
T cd08283 182 VKPGD--TVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS----HLG-A-ETINFEEVDDVVEAL-RELTGG 252 (386)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC-c-EEEcCCcchHHHHHH-HHHcCC
Confidence 34667 899999987 7777777766 6646999998873 222222 110 1 001111110 10000 0011 1
Q ss_pred CCccEEEEcccCC---------------CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVY---------------IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~---------------~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|+|+-+-.-. ...+....+..+.++++++|+++...
T Consensus 253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2589988642100 01123557888899999999998864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.89 Score=40.45 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=53.7
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..+++ +|+=+|||+ |......++. |+ +|+.+|.++. ...+. ..+ . ..... .. .-..
T Consensus 199 ~l~Gk--tVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~----~~G--~----~~~~~-----~e---~v~~ 257 (413)
T cd00401 199 MIAGK--VAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAA----MEG--Y----EVMTM-----EE---AVKE 257 (413)
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHH----hcC--C----EEccH-----HH---HHcC
Confidence 45788 999999998 7766555544 88 8999999873 22111 111 1 11111 11 1135
Q ss_pred ccEEEEcccCCCcccHHHHHH-HHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVR-AMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~-~l~~~l~pgG~l~i~~~ 177 (232)
.|+|+.+.. . ...+. ...+.+++||+++.+..
T Consensus 258 aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 258 GDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 799987431 2 33444 35788999999987764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.2 Score=34.31 Aligned_cols=110 Identities=18% Similarity=0.168 Sum_probs=66.2
Q ss_pred CcEEEeCccccHHHHHHHH----hC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 69 RRAIELGAGCGAAGMAFYL----LG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~----~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+.+|+|+|+..-+..+.. .+ ..+++-+|++.. +...++.+....+.+ .+.-...+..........-++==.
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l--~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGL--EVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCC--eEeehhhhHHHHHhcccCCCeEEE
Confidence 4899999999886644432 22 248999999984 677777776654333 112222222111111011122223
Q ss_pred EEEcccC--CCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVV--YIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~--~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++....+ +.+.....++..+...++||-.+++....+.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 3344444 4667788899999999999999999755444
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.5 Score=35.52 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=67.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++ .|+=+| ---+.|+.++..+ +.++..+|+++- +....+-++.-+. +++....+|..++.+.. ..++||
T Consensus 151 L~gK--~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~---~~ie~~~~Dlr~plpe~-~~~kFD 223 (354)
T COG1568 151 LEGK--EIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY---NNIEAFVFDLRNPLPED-LKRKFD 223 (354)
T ss_pred cCCC--eEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc---cchhheeehhcccChHH-HHhhCC
Confidence 3566 799998 5667778777663 569999999994 5555555554432 22567777777765422 346899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCC-C--cEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVAD-D--GVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~p-g--G~l~i~~ 176 (232)
+.+. ++.+-...+..++..=-..|+. | |++-+..
T Consensus 224 vfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 224 VFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred eeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 9985 5556555566666554445554 3 5555554
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.60 E-value=5.4 Score=34.09 Aligned_cols=91 Identities=13% Similarity=-0.007 Sum_probs=52.9
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +||=.|+|. |.....+|+. |+ ++++++.++. ....++..+... + + +... . ..+.+
T Consensus 163 ~~~g~--~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~---~~~~a~~~Ga~~---v-i---~~~~-~----~~~~~ 224 (329)
T TIGR02822 163 LPPGG--RLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAA---ARRLALALGAAS---A-G---GAYD-T----PPEPL 224 (329)
T ss_pred CCCCC--EEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChH---HHHHHHHhCCce---e-c---cccc-c----Ccccc
Confidence 34677 899999865 5555666655 77 7999988773 111122222110 0 0 1000 0 11357
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+++..+.. ...+....+.++++|++++...
T Consensus 225 d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 225 DAAILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred eEEEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 887754432 2467778889999999987653
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.55 E-value=3 Score=39.50 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=37.7
Q ss_pred CCccEEEEcccCC---CcccH-HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 138 PPFDLVIAADVVY---IEESA-AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 138 ~~fD~Ii~~~~~~---~~~~~-~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
..+|.++. |.+. +++.+ +.+++.+.++++|||++.-.. ....+...+. .||++...+
T Consensus 165 ~~~d~~~l-D~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t------~a~~vr~~l~~~GF~v~~~~ 226 (662)
T PRK01747 165 ARADAWFL-DGFAPAKNPDMWSPNLFNALARLARPGATLATFT------SAGFVRRGLQEAGFTVRKVK 226 (662)
T ss_pred ccccEEEe-CCCCCccChhhccHHHHHHHHHHhCCCCEEEEee------hHHHHHHHHHHcCCeeeecC
Confidence 46999997 4332 33333 568899999999999887443 1234444444 589887764
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.6 Score=36.39 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=64.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc----cccCCC-CccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ----INALKP-PFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~----~~~~~~-~fD~I 143 (232)
.|+.||||.=.-...+... +. +++=+|..+++..-++.+...+.....+..+...|+..... ..+.+. .--++
T Consensus 84 qvV~LGaGlDTr~~Rl~~~~~~-~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~ 162 (260)
T TIGR00027 84 QVVILGAGLDTRAYRLPWPDGT-RVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAW 162 (260)
T ss_pred EEEEeCCccccHHHhcCCCCCC-eEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeee
Confidence 7999999986555544322 33 56666666666655555554433234456677777652111 111222 23455
Q ss_pred EEcccC-C-CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVV-Y-IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~-~-~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++-.++ | ..+....+++.+.+...||+.+++-..
T Consensus 163 i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 163 LWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred eecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 554444 3 556788899999999889998887653
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.2 Score=35.54 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=52.7
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-c-CCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-A-LKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-~-~~~ 138 (232)
.++. +||=+|+|+ |.++..+|+. |+.+++++|.++. ...++. .+.. ..+...+. ..... . ...
T Consensus 119 ~~g~--~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~----~~i~~~~~--~~~~~~~~~~~ 186 (280)
T TIGR03366 119 LKGR--RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT----ALAEPEVL--AERQGGLQNGR 186 (280)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc----EecCchhh--HHHHHHHhCCC
Confidence 3677 888899876 6666666665 7745999987763 222111 1111 00000000 00000 0 113
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-.- - -...+....++++++|++++..
T Consensus 187 g~d~vid~~--G----~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 187 GVDVALEFS--G----ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCEEEECC--C----ChHHHHHHHHHhcCCCEEEEec
Confidence 589988532 1 1346677788999999998765
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.27 E-value=1.4 Score=37.30 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=51.1
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+++ +||=+|||. |++++.+|+. |+..++++|.++. +..+.. .. . .+-.. . ....+|
T Consensus 144 ~~~--~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~----~~--~--------i~~~~-~----~~~g~D 202 (308)
T TIGR01202 144 KVL--PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG----YE--V--------LDPEK-D----PRRDYR 202 (308)
T ss_pred CCC--cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh----cc--c--------cChhh-c----cCCCCC
Confidence 456 788889887 7777777765 8756778887662 211111 00 0 01000 0 123589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-+- .. ...+....++++++|++++..
T Consensus 203 vvid~~--G~----~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 203 AIYDAS--GD----PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEEECC--CC----HHHHHHHHHhhhcCcEEEEEe
Confidence 988542 21 345677788999999998764
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.96 Score=36.85 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=31.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
.++. .|||-.||+|..++.+.+.+. +++++|+++.
T Consensus 162 ~~g~--~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~ 196 (227)
T PRK13699 162 HPNA--IVLDPFAGSGSTCVAALQSGR-RYIGIELLEQ 196 (227)
T ss_pred CCCC--EEEeCCCCCCHHHHHHHHcCC-CEEEEecCHH
Confidence 3777 999999999999999888887 9999999984
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.38 Score=42.52 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=47.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEee
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLY 126 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d 126 (232)
..++. .|-|+.||.|..++.+++.++ +|++-|.++ +++....|+..|... ...+....+|
T Consensus 247 fk~ge--vv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~-~~~iei~Nmd 307 (495)
T KOG2078|consen 247 FKPGE--VVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD-PSAIEIFNMD 307 (495)
T ss_pred cCCcc--hhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc-hhheeeeccc
Confidence 34777 899999999999999999998 999999998 688999999888632 1124444444
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.87 Score=39.21 Aligned_cols=118 Identities=16% Similarity=0.141 Sum_probs=65.7
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC-CccEEEEcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP-PFDLVIAAD 147 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~fD~Ii~~~ 147 (232)
++++||.||.|.+++.+...|+.-+.++|+++ .+.+....|.+. . .....|....... .... .+|+++.++
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~---~a~~ty~~n~~~--~--~~~~~di~~~~~~-~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP---PAVATYKANFPH--G--DIILGDIKELDGE-ALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH---HHHHHHHHhCCC--C--ceeechHhhcChh-hccccCCCEEEeCC
Confidence 48999999999999988888988889999999 333333333321 0 1222222211110 1122 689999977
Q ss_pred cCCCcc----------cHHHHHHH---HHHhhCCCcEEEEEEeecC-----hhHHHHHHHHHhc-Cce
Q 026858 148 VVYIEE----------SAAQLVRA---MEALVADDGVVLLGYQLRS-----PEAHKLFWEMCAE-VFL 196 (232)
Q Consensus 148 ~~~~~~----------~~~~~l~~---l~~~l~pgG~l~i~~~~r~-----~~~~~~~~~~~~~-~f~ 196 (232)
+....+ ....++.. +...++| .+++...... ....+.+.+.+.+ +|.
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 764221 23333333 3344466 5555432221 1245556666664 665
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.75 Score=38.71 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCCccEEEEcccCCCc----------------ccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 137 KPPFDLVIAADVVYIE----------------ESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~----------------~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+++||+|++++++... .-+...+..+.++|+|||.+++....
T Consensus 25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 3579999987765320 11356889999999999999987543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.2 Score=38.48 Aligned_cols=98 Identities=19% Similarity=0.073 Sum_probs=52.7
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-CC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-PP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~ 139 (232)
.++. +||=.|||. |...+.+|+. |+.+++++|.++. ...+ +..+.. .-+....-++.... ..... ..
T Consensus 175 ~~g~--~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~----~~~Ga~--~~i~~~~~~~~~~i-~~~~~~~g 245 (358)
T TIGR03451 175 KRGD--SVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA----REFGAT--HTVNSSGTDPVEAI-RALTGGFG 245 (358)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCc--eEEcCCCcCHHHHH-HHHhCCCC
Confidence 3567 888889876 6666667765 7746999998773 2222 111211 00111110110000 00011 25
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+ ... ...+....+.++++|++++..
T Consensus 246 ~d~vid~--~g~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 246 ADVVIDA--VGR----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCEEEEC--CCC----HHHHHHHHHHhccCCEEEEEC
Confidence 8988843 322 235566678899999998764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.61 Score=40.80 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=66.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHH------hcCCCCCCceEEEEeecCCCccccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLK------RNKPVLNKSLKTSVLYWNNQDQINA 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~------~~~~~~~~~i~~~~~d~~~~~~~~~ 135 (232)
.++. ...|+|.|.|.+....|.. ++..-+|+++.+. -+.+..+.. .-.......+.....++........
T Consensus 191 g~~D--~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 191 GPAD--VFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred CCCC--cccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHH
Confidence 3556 8999999999877665544 5556677776531 112222222 1111123445555665544432222
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.....++|+++.+.+.++.--. +..+..-+++|.+++=..+.
T Consensus 269 I~~eatvi~vNN~~Fdp~L~lr-~~eil~~ck~gtrIiS~~~L 310 (419)
T KOG3924|consen 269 IQTEATVIFVNNVAFDPELKLR-SKEILQKCKDGTRIISSKPL 310 (419)
T ss_pred HhhcceEEEEecccCCHHHHHh-hHHHHhhCCCcceEeccccc
Confidence 3446899999888887655444 34777888999998865443
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.50 E-value=2.4 Score=38.81 Aligned_cols=97 Identities=15% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCC-C-----------
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNN-Q----------- 130 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~----------- 130 (232)
++. +|+=+|||. |+.+..+++. |+ .++.+|.++.. ....+..+. .+...+... .
T Consensus 163 p~a--kVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~r---le~a~~lGa------~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 163 PPA--KVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEV---KEQVQSMGA------EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHH---HHHHHHcCC------eEEeccccccccccccceeecC
Confidence 456 999999998 7877766655 87 79999998842 111121111 111222110 0
Q ss_pred cc--------cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 131 DQ--------INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 131 ~~--------~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
.+ ....-..+|+|+.+-.+-......-+.+...+.+|||+.++
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 00 01112459999876544332232345577788888887765
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.6 Score=31.46 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=51.3
Q ss_pred cccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---c-ccCC-CCccEEEEcccC
Q 026858 77 GCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---I-NALK-PPFDLVIAADVV 149 (232)
Q Consensus 77 GtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~-~~~~-~~fD~Ii~~~~~ 149 (232)
|.|+.++.+|+. |+ +++++|.++. .+.+ +..+ ....++..+... . .... ..+|+|+-+-.
T Consensus 1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~----~~~G-------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELA----KELG-------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG- 67 (130)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEESSHHHHHHH----HHTT-------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-
T ss_pred ChHHHHHHHHHHcCC-EEEEEECCHHHHHHH----Hhhc-------ccccccccccccccccccccccccceEEEEecC-
Confidence 467888888776 75 9999999983 2222 2222 111233333221 0 1112 36999996532
Q ss_pred CCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 150 YIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 150 ~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
....++...++++++|++.++..
T Consensus 68 -----~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 -----SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -----SHHHHHHHHHHEEEEEEEEEESS
T ss_pred -----cHHHHHHHHHHhccCCEEEEEEc
Confidence 25678888999999999998753
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.3 Score=38.94 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=48.4
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+||=||||. |. .+..+|+.+-.+|+..|.+.. .+++-.... ..+++...+|..+.......-..+|+||...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~--~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE--KCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH--HHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 899999976 55 334556666459999999862 222211211 1256888999888765444445679999766
Q ss_pred cCC
Q 026858 148 VVY 150 (232)
Q Consensus 148 ~~~ 150 (232)
+.+
T Consensus 77 p~~ 79 (389)
T COG1748 77 PPF 79 (389)
T ss_pred Cch
Confidence 554
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=89.04 E-value=4.4 Score=34.91 Aligned_cols=92 Identities=23% Similarity=0.250 Sum_probs=52.5
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcc---hhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDI---SPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~---s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~ 138 (232)
++. +||=+|+|. |.++..+|+. |+ ++++++. ++. ...-++..+. .. .+..+.... ....+
T Consensus 172 ~g~--~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~---~~~~~~~~Ga------~~--v~~~~~~~~~~~~~~ 237 (355)
T cd08230 172 NPR--RALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDP---KADIVEELGA------TY--VNSSKTPVAEVKLVG 237 (355)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHH---HHHHHHHcCC------EE--ecCCccchhhhhhcC
Confidence 567 899899876 7777777665 77 8999986 331 1111122221 11 111111100 01124
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-+-. . ...+....++++++|++++..
T Consensus 238 ~~d~vid~~g--~----~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 238 EFDLIIEATG--V----PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCCEEEECcC--C----HHHHHHHHHHccCCcEEEEEe
Confidence 6899886421 1 236677889999999988764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.2 Score=35.42 Aligned_cols=109 Identities=16% Similarity=0.105 Sum_probs=56.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH----------HHHH-HHHHHhcCCCCCCceEEEEeecCCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV----------MPAL-KHNLKRNKPVLNKSLKTSVLYWNNQ 130 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~----------~~~~-~~n~~~~~~~~~~~i~~~~~d~~~~ 130 (232)
.++. +|+|+=.|.|..+..++.. | -+.|+..-..+. +..+ ++....|...+.. ..+ .+ ...
T Consensus 47 kpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~-~~~-A~--~~p 120 (238)
T COG4798 47 KPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGK-PLV-AL--GAP 120 (238)
T ss_pred CCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCC-ccc-cc--CCC
Confidence 4777 9999999999999888765 2 124554433321 1111 1111112111100 000 00 000
Q ss_pred ccccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 131 DQINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 131 ~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+.... ...++|.++-.-.+ +......+...+.+.|||||.+++.++.-
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~~~~A~~vna~vf~~LKPGGv~~V~dH~a 169 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-HPATAAKVNAAVFKALKPGGVYLVEDHRA 169 (238)
T ss_pred Ccccccccchhhhhhhcccc-CcchHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 00000 11234444433333 36678889999999999999999986543
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=88.99 E-value=4.8 Score=31.62 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=53.4
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc-CCCC---------CCceEEEEeecCCCcccccC
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRN-KPVL---------NKSLKTSVLYWNNQDQINAL 136 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~-~~~~---------~~~i~~~~~d~~~~~~~~~~ 136 (232)
+|-=+|.|- |+ ++..+|..|. +|+++|+++. +....+....- .+.+ ..++.+.. ++. ..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~-~~~------~a 73 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATT-DIE------EA 73 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEES-EHH------HH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhh-hhh------hh
Confidence 455677776 65 5566677798 9999999983 22222100000 0000 11222211 110 00
Q ss_pred CCCccEEEEcccC-C------CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHH-HHHHHHh
Q 026858 137 KPPFDLVIAADVV-Y------IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHK-LFWEMCA 192 (232)
Q Consensus 137 ~~~fD~Ii~~~~~-~------~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~-~~~~~~~ 192 (232)
-...|+++.+-+. + +.+.+..+++.+.+.+++ |.+++....-.+.+.+ .+...++
T Consensus 74 i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~-~~lvV~~STvppGtt~~~~~~ile 136 (185)
T PF03721_consen 74 IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP-GDLVVIESTVPPGTTEELLKPILE 136 (185)
T ss_dssp HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS-CEEEEESSSSSTTHHHHHHHHHHH
T ss_pred hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh-cceEEEccEEEEeeehHhhhhhhh
Confidence 1246888765443 2 123478889999999999 4555554444455555 3334443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=88.65 E-value=11 Score=30.39 Aligned_cols=94 Identities=19% Similarity=0.137 Sum_probs=53.1
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----ccC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~~ 136 (232)
.++. +||-.|+|+ |.....+++. |. ++++++.++. ....+. .... . .++....... ...
T Consensus 133 ~~~~--~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~----~g~~-----~--~~~~~~~~~~~~~~~~~ 198 (271)
T cd05188 133 KPGD--TVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKE----LGAD-----H--VIDYKEEDLEEELRLTG 198 (271)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH----hCCc-----e--eccCCcCCHHHHHHHhc
Confidence 4667 999999986 5555555554 65 8999998863 222211 1110 0 0111111100 011
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.+.+|+++.+-. . ...+..+.+.++++|+++....
T Consensus 199 ~~~~d~vi~~~~--~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 199 GGGADVVIDAVG--G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCCCEEEECCC--C----HHHHHHHHHhcccCCEEEEEcc
Confidence 246999996422 1 1456677888899999887653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=88.61 E-value=3.6 Score=33.61 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=27.9
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
.... +||=+|||. |. ....|++.|.++++.+|.+.
T Consensus 9 L~~~--~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNA--HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCC--CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 3456 899999985 66 55777888999999999764
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.92 Score=38.85 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=62.6
Q ss_pred EEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC
Q 026858 71 AIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV 149 (232)
Q Consensus 71 VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~ 149 (232)
|+||.||.|.+++.+.+.|+.-+.++|+++. ....+. |.+. .....|+...... ....+|+++.+.+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~----N~~~-----~~~~~Di~~~~~~--~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEA----NFGN-----KVPFGDITKISPS--DIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHH----hCCC-----CCCccChhhhhhh--hCCCcCEEEecCCC
Confidence 6899999999999988889856678999983 333333 3321 0111222222110 11358999987665
Q ss_pred CC----------cccHHHHHHHHHHhh---CCCcEEEEEEeecC------hhHHHHHHHHHhc-CceEEE
Q 026858 150 YI----------EESAAQLVRAMEALV---ADDGVVLLGYQLRS------PEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 150 ~~----------~~~~~~~l~~l~~~l---~pgG~l~i~~~~r~------~~~~~~~~~~~~~-~f~~~~ 199 (232)
.. .+....++....+++ +|. +++...... ......+...+.+ +|.+..
T Consensus 70 q~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~ 137 (315)
T TIGR00675 70 QPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYY 137 (315)
T ss_pred cccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEE
Confidence 21 123345555555555 453 455432221 1223444555543 776643
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=88.49 E-value=1.7 Score=36.75 Aligned_cols=96 Identities=14% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||-.|+|. |.....+|+. |+ ++++++.++. ...++. .+.. ..+......+.... .......+|
T Consensus 165 ~~~--~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~--~~~~~~~~~~~~~~-~~~~~~~~D 234 (338)
T cd08254 165 PGE--TVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD--EVLNSLDDSPKDKK-AAGLGGGFD 234 (338)
T ss_pred CCC--EEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC--EEEcCCCcCHHHHH-HHhcCCCce
Confidence 556 888888764 6666666665 77 7999988773 222211 1110 00000000000000 001124699
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+.+-. ....+..+.+.|+++|+++...
T Consensus 235 ~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 235 VIFDFVG------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EEEECCC------CHHHHHHHHHHhhcCCEEEEEC
Confidence 8885321 1346778889999999998763
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=88.35 E-value=3.2 Score=33.05 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=28.2
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+.... +|+=+|||. |. .+..+++.|.++++.+|.+
T Consensus 18 ~L~~~--~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQA--TVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCC--cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34556 899999996 55 6677788898889999988
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=88.22 E-value=1.9 Score=37.46 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=52.3
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +||=.|+|. |.....+|+. |+.+|+++|.++. ...+ + ..+.. .-+.....++.... .....+.+
T Consensus 190 ~~g~--~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~---~~Ga~--~~i~~~~~~~~~~i-~~~~~~g~ 260 (371)
T cd08281 190 RPGQ--SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA-R---ELGAT--ATVNAGDPNAVEQV-RELTGGGV 260 (371)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-H---HcCCc--eEeCCCchhHHHHH-HHHhCCCC
Confidence 3566 788889876 6666666665 7757999998873 2222 1 11211 00000000100000 00012358
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|+-+- .. ...+....++++++|++++..
T Consensus 261 d~vid~~--G~----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 261 DYAFEMA--GS----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CEEEECC--CC----hHHHHHHHHHHhcCCEEEEEc
Confidence 9998532 11 245666778899999988764
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=88.18 E-value=4 Score=34.76 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=50.9
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC--cccc-cC-
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ--DQIN-AL- 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~--~~~~-~~- 136 (232)
.++. +||=+|+|. |..+..+++. |+.+++++|.++. ...+ + ..+.. .+ ++.... .... ..
T Consensus 162 ~~g~--~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~---~~ga~-----~~--i~~~~~~~~~~~~~~~ 228 (339)
T cd08239 162 SGRD--TVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA-K---ALGAD-----FV--INSGQDDVQEIRELTS 228 (339)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-H---HhCCC-----EE--EcCCcchHHHHHHHhC
Confidence 4577 888888865 6666666655 7734999998763 2222 1 11111 00 111110 0000 01
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+|+|+-+. .. ...+....+.++++|++++..
T Consensus 229 ~~~~d~vid~~--g~----~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 229 GAGADVAIECS--GN----TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCCEEEECC--CC----HHHHHHHHHHhhcCCEEEEEc
Confidence 13699998532 11 234556678899999998754
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=3.8 Score=37.17 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchh
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~ 100 (232)
.++++||.||.|-+++.+-..|...+.++|+++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~ 120 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK 120 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH
Confidence 569999999999999888887886778899998
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.3 Score=34.56 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=36.6
Q ss_pred CCCccEEEEcccCCC------c---------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEE
Q 026858 137 KPPFDLVIAADVVYI------E---------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~------~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~ 198 (232)
++++|+|+..++... . +-....+.+++++|||||.+++....+. ...+...+. .+|.+.
T Consensus 18 d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~---~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 18 DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR---VDRFMAAWKNAGFSVV 92 (227)
T ss_pred ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc---HHHHHHHHHHCCCEEe
Confidence 457888887655421 0 1135678899999999999887554332 123444444 377644
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.62 Score=38.29 Aligned_cols=46 Identities=26% Similarity=0.370 Sum_probs=30.5
Q ss_pred HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 40 LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 40 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
|+.++.+..+ ..... +++|.-||+|.+++.+...+. +++.-|+++.
T Consensus 8 l~~~I~~~ip-------------~~~~~--~~vepF~G~g~V~~~~~~~~~-~vi~ND~~~~ 53 (260)
T PF02086_consen 8 LAKWIIELIP-------------KNKHK--TYVEPFAGGGSVFLNLKQPGK-RVIINDINPD 53 (260)
T ss_dssp GHHHHHHHS--------------S-S-S--EEEETT-TTSHHHHCC---SS-EEEEEES-HH
T ss_pred HHHHHHHHcC-------------CCCCC--EEEEEecchhHHHHHhccccc-ceeeeechHH
Confidence 5666766655 22445 999999999999988876555 9999999974
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.3 Score=36.21 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=41.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNN 129 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~ 129 (232)
..++. .++|--+|.|.-+..++.. +..+|+++|.++ ++..++..... ...++.+...++.+
T Consensus 18 ~~~gg--iyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~----~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 18 IKPDG--IYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD----FEGRVVLIHDNFAN 80 (305)
T ss_pred cCCCC--EEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh----cCCcEEEEeCCHHH
Confidence 34667 8999999999988877765 335999999999 45555554432 22345666555544
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=86.95 E-value=3.2 Score=32.97 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=26.5
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
...+ +||=+|||. |. ....+++.|.++++.+|.+.
T Consensus 19 L~~s--~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSA--RILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhC--cEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 3456 899999987 44 44666777998999999763
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.26 E-value=1.7 Score=39.56 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=65.2
Q ss_pred CcEEEeCccccHHH---HHHHHh---CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 69 RRAIELGAGCGAAG---MAFYLL---GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 69 ~~VLElGcGtG~~s---~~la~~---~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..|+=+|+|-|-+. +.+|.. .. ++++++.++-...+.+| .|.....++++...-|...-.. ...+.|+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkV-klyavEKNPNAivtL~~--~n~~~W~~~Vtii~~DMR~w~a---p~eq~DI 442 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKV-KLYAVEKNPNAIVTLQN--RNFECWDNRVTIISSDMRKWNA---PREQADI 442 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCce-EEEEEecCcchhhhhhh--hchhhhcCeeEEEeccccccCC---chhhccc
Confidence 37888999999876 333433 34 89999999832222222 2222345667777777655442 1357899
Q ss_pred EEE--cccCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIA--ADVVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~--~~~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
+|+ -..+...+.-+..+.-+.+.|||+|+.+=
T Consensus 443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 984 23344556667889999999999987664
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=6.9 Score=31.43 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.1
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+.... +|+=+|||. |. +...+++.|.++++.+|.+
T Consensus 25 ~L~~~--~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKA--KVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCC--CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34556 899999996 55 6677788898899999987
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=85.83 E-value=11 Score=27.28 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=45.6
Q ss_pred cEEEeCccccH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|.|+|.|-=. .+-.+++.|+ .++++|+++. +.. . -+.+..-|..++.-.- =...|+|.+.-
T Consensus 16 kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~---~----g~~~v~DDitnP~~~i--Y~~A~lIYSiR- 78 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP---E----GLRFVVDDITNPNISI--YEGADLIYSIR- 78 (129)
T ss_pred cEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc---c----cceEEEccCCCccHHH--hhCccceeecC-
Confidence 79999988744 6677788898 9999999882 111 1 1355555555544211 12357776632
Q ss_pred CCCcccHHHHHHHHHHhh
Q 026858 149 VYIEESAAQLVRAMEALV 166 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l 166 (232)
.+..+...+-.+.+.+
T Consensus 79 --pppEl~~~ildva~aV 94 (129)
T COG1255 79 --PPPELQSAILDVAKAV 94 (129)
T ss_pred --CCHHHHHHHHHHHHhh
Confidence 3334444444444444
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=85.71 E-value=9.2 Score=29.65 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=24.5
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+|+=+|||. |. ....+++.|.++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899985 65 56777888988899999874
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=85.31 E-value=2.2 Score=31.35 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=21.6
Q ss_pred cEEEeCccccH-HHHHHHHhCCCcEEEEcchh
Q 026858 70 RAIELGAGCGA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 70 ~VLElGcGtG~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+|+|+|-|.=. .+..++..|+ .|+++|+++
T Consensus 16 kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~ 46 (127)
T PF03686_consen 16 KIVEVGIGFNPEVAKKLKERGF-DVIATDINP 46 (127)
T ss_dssp EEEEET-TT--HHHHHHHHHS--EEEEE-SS-
T ss_pred cEEEECcCCCHHHHHHHHHcCC-cEEEEECcc
Confidence 89999999844 7778888898 999999998
|
; PDB: 2K4M_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.28 E-value=2.5 Score=34.54 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred cEEEeCccccHHHHHHHHh--------CC--CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc----cc
Q 026858 70 RAIELGAGCGAAGMAFYLL--------GL--ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NA 135 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~--------~~--~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 135 (232)
+++||.+.+|..+..+++. +. ..++++|+.+|.. . .-+...+.|....... .+
T Consensus 44 rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I----~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------I----EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred HHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------c----CceEEeecccCCHhHHHHHHHH
Confidence 8999999999999988875 11 1399999876311 0 1134455566554432 22
Q ss_pred CCC-CccEEEEcccCC--Ccc---------cHHHHHHHHHHhhCCCcEEEE
Q 026858 136 LKP-PFDLVIAADVVY--IEE---------SAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 136 ~~~-~fD~Ii~~~~~~--~~~---------~~~~~l~~l~~~l~pgG~l~i 174 (232)
+.+ +.|+|++..... ..+ .+-.++.....+|+|||.++-
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 333 789999844331 112 244455556678899999875
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=85.28 E-value=7.9 Score=33.21 Aligned_cols=91 Identities=9% Similarity=0.026 Sum_probs=53.4
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
.++. +||=+|||+ |++++.+++. +..+++++|.++. ++.++. ... .. .. .... ....
T Consensus 162 ~~g~--~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~------~~-~~--~~~~----~~~g 222 (341)
T cd08237 162 KDRN--VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE------TY-LI--DDIP----EDLA 222 (341)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc------ee-eh--hhhh----hccC
Confidence 3577 899999987 7776665553 5558999998873 222221 110 00 00 0000 0124
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+ ... ...+..+....++++++|++++..
T Consensus 223 ~d~viD~--~G~-~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 223 VDHAFEC--VGG-RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CcEEEEC--CCC-CccHHHHHHHHHhCcCCcEEEEEe
Confidence 8988843 221 113456777888999999988764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=84.97 E-value=23 Score=30.02 Aligned_cols=96 Identities=25% Similarity=0.206 Sum_probs=51.7
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||-.|||. |.....+++. |+.++++++.++......+.. +.. ..+.....++. ......+.+|+
T Consensus 165 ~~~--~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~---g~~--~vi~~~~~~~~---~~~~~~~~vd~ 234 (339)
T cd08232 165 AGK--RVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM---GAD--ETVNLARDPLA---AYAADKGDFDV 234 (339)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc---CCC--EEEcCCchhhh---hhhccCCCccE
Confidence 667 888888765 5555556654 665789998776322222211 110 00000000000 01111235899
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++.+.. -...+..+.+.|+++|+++...
T Consensus 235 vld~~g------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASG------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 986422 1345677889999999988754
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=84.93 E-value=7 Score=33.89 Aligned_cols=93 Identities=14% Similarity=0.109 Sum_probs=50.6
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||=.|+|. |...+.+|+. |+ ++++++.++. .....+ ..+.. ... +-.+........+.+|
T Consensus 183 ~g~--~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~---~~Ga~-----~vi--~~~~~~~~~~~~~~~D 249 (360)
T PLN02586 183 PGK--HLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN---RLGAD-----SFL--VSTDPEKMKAAIGTMD 249 (360)
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH---hCCCc-----EEE--cCCCHHHHHhhcCCCC
Confidence 566 788899876 7777777766 77 7888877652 111111 11111 000 0000001111113589
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-. ... ...+....++++++|+++...
T Consensus 250 ~vid~--~g~----~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 250 YIIDT--VSA----VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEEEC--CCC----HHHHHHHHHHhcCCcEEEEeC
Confidence 88843 221 235667788999999988764
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=84.48 E-value=11 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=23.0
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
+|+=+|||. |. ....+++.|.++++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 477789985 55 5566677788899999976
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.40 E-value=6.4 Score=33.69 Aligned_cols=99 Identities=15% Similarity=0.024 Sum_probs=51.6
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~f 140 (232)
.++. +||=.|+|. |..+..+|+. |+..++.+|.++.-....+ ..+.. ..+.....++.... .... ...+
T Consensus 165 ~~g~--~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~---~~g~~--~~v~~~~~~~~~~i-~~~~~~~~~ 236 (351)
T cd08285 165 KLGD--TVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK---EYGAT--DIVDYKNGDVVEQI-LKLTGGKGV 236 (351)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH---HcCCc--eEecCCCCCHHHHH-HHHhCCCCC
Confidence 3567 888888765 5566666655 7756899988762111111 11110 00110000100000 0001 1358
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+|+-+- .. ...+..+.++++++|+++...
T Consensus 237 d~vld~~--g~----~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 237 DAVIIAG--GG----QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred cEEEECC--CC----HHHHHHHHHHhhcCCEEEEec
Confidence 9988531 11 346778888999999988653
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=83.46 E-value=5 Score=29.84 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHH
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC 191 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~ 191 (232)
...||+|+.+--- .+.+.+++.+.+.+.+++.+++....-. ..+.+.+.+
T Consensus 65 ~~~~D~viv~vKa---~~~~~~l~~l~~~~~~~t~iv~~qNG~g--~~~~l~~~~ 114 (151)
T PF02558_consen 65 AGPYDLVIVAVKA---YQLEQALQSLKPYLDPNTTIVSLQNGMG--NEEVLAEYF 114 (151)
T ss_dssp HSTESEEEE-SSG---GGHHHHHHHHCTGEETTEEEEEESSSSS--HHHHHHCHS
T ss_pred cCCCcEEEEEecc---cchHHHHHHHhhccCCCcEEEEEeCCCC--cHHHHHHHc
Confidence 3579999986432 3667788899999999988877765443 234444444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.34 E-value=5.8 Score=33.95 Aligned_cols=97 Identities=15% Similarity=0.209 Sum_probs=51.0
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~ 139 (232)
.++. +||=.|+|+ |..++.+|+. |+..++++|.++. ...+ + ..+.. .-+.....+.. ...... ...
T Consensus 159 ~~g~--~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~-~---~~Ga~--~~i~~~~~~~~--~~~~~~~~~~ 228 (347)
T PRK10309 159 CEGK--NVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA-K---SLGAM--QTFNSREMSAP--QIQSVLRELR 228 (347)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-H---HcCCc--eEecCcccCHH--HHHHHhcCCC
Confidence 3567 888889877 6666666665 7744788887763 2221 2 11110 00000000000 000001 125
Q ss_pred cc-EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FD-LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD-~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+| +|+- +... ...+....++++++|++++..
T Consensus 229 ~d~~v~d--~~G~----~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 229 FDQLILE--TAGV----PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCeEEEE--CCCC----HHHHHHHHHHhhcCCEEEEEc
Confidence 77 5543 2222 346777789999999988864
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.33 E-value=12 Score=31.46 Aligned_cols=98 Identities=24% Similarity=0.263 Sum_probs=52.2
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCC---CCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL---NKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=+|+|. |. ++..+++.|. .|++++..+..+... .++... ...... .... ..+.......+|+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~----~~g~~~~~~~~~~~~-~~~~--~~~~~~~~~~~d~vi 73 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVRPKRAKALR----ERGLVIRSDHGDAVV-PGPV--ITDPEELTGPFDLVI 73 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEecHHHHHHHH----hCCeEEEeCCCeEEe-ccee--ecCHHHccCCCCEEE
Confidence 577788887 44 5566666676 899998733222222 111000 000000 0000 011111125689998
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.+-..+ ..+.+++.+...+.++..++.....
T Consensus 74 lavk~~---~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 74 LAVKAY---QLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred EEeccc---CHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 765433 5677888888888887766655443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=18 Score=29.50 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=44.8
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
..++ ++|=.|+..|+ ++..+++.|+ +|+++|.++. ........ ..++.+...|+.+......
T Consensus 4 ~~~k--~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 4 LAGK--VAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL-------GERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCCC--EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-------CCeeEEEEecCCCHHHHHHHHHH
Confidence 4566 88888875543 3344455588 9999998762 22222211 1245677788877653211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..+..|+++.+...
T Consensus 74 ~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 12468999876544
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=83.18 E-value=3.3 Score=32.83 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 155 AAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 155 ~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
....+..+.++|+|+|.+++....+.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchh
Confidence 57778889999999999988765443
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.06 E-value=5.3 Score=35.95 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=56.7
Q ss_pred cEEEeCccccHHH---HHHHHhCCCcEEEEcchhH-HHHHHHHHHh---cCCCCCCceEEEEeecCCCccccc-CCCCcc
Q 026858 70 RAIELGAGCGAAG---MAFYLLGLADIVLTDISPV-MPALKHNLKR---NKPVLNKSLKTSVLYWNNQDQINA-LKPPFD 141 (232)
Q Consensus 70 ~VLElGcGtG~~s---~~la~~~~~~v~~~D~s~~-~~~~~~n~~~---~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD 141 (232)
.++|+|.|.|.-. ..+-+.-...++.+|.+.. +.....+... ++...-..+.+.... .+. ....||
T Consensus 203 ~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~------~pi~~~~~yD 276 (491)
T KOG2539|consen 203 LLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQR------LPIDIKNGYD 276 (491)
T ss_pred HHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhccc------CCCCccccee
Confidence 7899998876533 2222223458999999974 4444444332 111111111111110 111 134599
Q ss_pred EEEEcccCCCc---ccHHHHHHHHHH-hhCCCcEEEEEEeecC
Q 026858 142 LVIAADVVYIE---ESAAQLVRAMEA-LVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ~Ii~~~~~~~~---~~~~~~l~~l~~-~l~pgG~l~i~~~~r~ 180 (232)
+|+++..++.. .......+.+.+ ...+|+.++++.....
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99998887632 244445555444 4578888888876443
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=9.3 Score=32.43 Aligned_cols=100 Identities=17% Similarity=0.093 Sum_probs=59.0
Q ss_pred cEEEeCccc--cHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC--CCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC--GAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL--NKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt--G~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~--~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=+|+|. |.++..+++.|. .|++++-++ .++..++ .++..+ ............ . ....+.||+|+
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~--~--~~~~~~~D~vi 75 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAE--T--ADAAEPIHRLL 75 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCC--C--cccccccCEEE
Confidence 799999997 447778888787 899999864 2333322 111000 000011111111 1 11235799999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.+-=-| +...+++.+..++.++..++.....-.
T Consensus 76 v~vK~~---~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 76 LACKAY---DAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred EECCHH---hHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 864333 456788889999999998877765443
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=82.32 E-value=6.2 Score=34.45 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=26.9
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
.++. +||=+|+|+ |..++.+|+. |+.+|+++|.++.
T Consensus 197 ~~g~--~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~ 234 (381)
T PLN02740 197 QAGS--SVAIFGLGAVGLAVAEGARARGASKIIGVDINPE 234 (381)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChH
Confidence 3667 899999876 6666666665 7656999998773
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.26 E-value=8.4 Score=32.78 Aligned_cols=97 Identities=22% Similarity=0.195 Sum_probs=55.3
Q ss_pred cEEEeCccc-c-HHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCC---CCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGC-G-AAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL---NKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGt-G-~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|+=||+|. | .++..+++.|. .|+.+..++. .. ...++..+ ............... ...+.+|+|+
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~D~vi 77 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSDY-EA----VRENGLQVDSVHGDFHLPPVQAYRSA---EDMPPCDWVL 77 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCH-HH----HHhCCeEEEeCCCCeeecCceEEcch---hhcCCCCEEE
Confidence 899999887 4 46777777787 8888887651 11 12222100 011111111111111 1235799999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.+-..+ ....++..+..++++++.++.....
T Consensus 78 lavK~~---~~~~~~~~l~~~~~~~~~iv~lqNG 108 (313)
T PRK06249 78 VGLKTT---ANALLAPLIPQVAAPDAKVLLLQNG 108 (313)
T ss_pred EEecCC---ChHhHHHHHhhhcCCCCEEEEecCC
Confidence 865444 3456788888889999887766543
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=81.96 E-value=3.1 Score=34.61 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=27.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh------CCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL------GLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~------~~~~v~~~D~s~ 100 (232)
.++. .++|+|||.|.+|..++.. ....++++|-..
T Consensus 17 ~~~~--~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDS--CFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCC--EEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 3556 8999999999999888764 123899999764
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=81.86 E-value=13 Score=32.00 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=26.8
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
.++. +||=+|||+ |...+.+|+. |+ +++++|.++.
T Consensus 165 ~~g~--~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~ 201 (349)
T TIGR03201 165 KKGD--LVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPE 201 (349)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHH
Confidence 4567 899999976 7666666665 77 7999998773
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.67 E-value=20 Score=29.98 Aligned_cols=97 Identities=27% Similarity=0.293 Sum_probs=53.8
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+|+=+|+|. |. ++..+++.|. +|+.+|.++ .+.... .++... ..... ..... ...... ...+|+|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~~g~~~~~~~~~-~~~~~--~~~~~~-~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALN----ENGLRLEDGEIT-VPVLA--ADDPAE-LGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHH----HcCCcccCCcee-ecccC--CCChhH-cCCCCEEEE
Confidence 577788876 43 5555566676 899999854 222222 222111 11110 00000 011111 257999998
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+-..+ ....+++.+...+.++..++.....
T Consensus 73 a~k~~---~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 73 AVKAY---QLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred ecccc---cHHHHHHHHhhhcCCCCEEEEecCC
Confidence 65433 5677888888888887777765544
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=81.61 E-value=2.6 Score=33.54 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.2
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+.... +||=+|||. |. .+..+++.|.++++.+|.+.
T Consensus 18 kl~~~--~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 18 RLLNS--HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred HhcCC--CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 34556 899999996 55 55677788988999999873
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >KOG3350 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.58 E-value=4.4 Score=31.73 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 90 LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 90 ~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
..+|+..+.+. .....+ -.|.-.|.+.+.+++. ..++||+||+.+++...+-+.+....++++.++
T Consensus 98 ~~~v~lfEfDk-------RFe~yg------~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~ 164 (217)
T KOG3350|consen 98 HDQVYLFEFDK-------RFELYG------TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRN 164 (217)
T ss_pred ceeEEEEEehh-------hHHhcc------ceeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcC
Confidence 34777777766 122222 1566677777766543 345799999988888888888889999999999
Q ss_pred CcEEEEEEeecC
Q 026858 169 DGVVLLGYQLRS 180 (232)
Q Consensus 169 gG~l~i~~~~r~ 180 (232)
.-+++++.-.+.
T Consensus 165 ~~kvilCtGeim 176 (217)
T KOG3350|consen 165 QKKVILCTGEIM 176 (217)
T ss_pred CceEEEechhHh
Confidence 888888874443
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=80.74 E-value=13 Score=33.12 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=52.3
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHH-hCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYL-LGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~-~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++ +|+=+|+|. |......++ .|+ +|+++|.++... ... ...+ . ....+ ++ .-...|
T Consensus 193 l~Gk--~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~--~~A-~~~G--~----~v~~l-----ee---al~~aD 252 (406)
T TIGR00936 193 IAGK--TVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRA--LEA-AMDG--F----RVMTM-----EE---AAKIGD 252 (406)
T ss_pred CCcC--EEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhH--HHH-HhcC--C----EeCCH-----HH---HHhcCC
Confidence 4778 999999998 664444444 377 899999888311 111 1111 1 11111 11 113469
Q ss_pred EEEEcccCCCcccHHHHHH-HHHHhhCCCcEEEEEEee
Q 026858 142 LVIAADVVYIEESAAQLVR-AMEALVADDGVVLLGYQL 178 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~-~l~~~l~pgG~l~i~~~~ 178 (232)
+|+.... ...++. .....+++|++++.+...
T Consensus 253 VVItaTG------~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 253 IFITATG------NKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred EEEECCC------CHHHHHHHHHhcCCCCcEEEEECCC
Confidence 9887421 234444 477889999998887654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.50 E-value=13 Score=32.46 Aligned_cols=94 Identities=15% Similarity=0.125 Sum_probs=50.2
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +||=.|+|. |..++.+|+. |+ +++++|.++.- ....++..+.. .. .+...........+.+|+
T Consensus 178 ~g~--~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~--~~~~a~~lGa~-----~~--i~~~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 178 SGK--RLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEK--EREAIDRLGAD-----SF--LVTTDSQKMKEAVGTMDF 245 (375)
T ss_pred CCC--EEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHH--hHHHHHhCCCc-----EE--EcCcCHHHHHHhhCCCcE
Confidence 566 888888876 6676777765 77 78888876421 01111111111 00 011110100011124888
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|+-+- . ....+....+.++++|+++...
T Consensus 246 vid~~--G----~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 246 IIDTV--S----AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EEECC--C----cHHHHHHHHHhhcCCCEEEEEc
Confidence 88532 1 1235666778899999988754
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=80.40 E-value=6.8 Score=34.23 Aligned_cols=99 Identities=14% Similarity=0.040 Sum_probs=51.0
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEe--ecCCCcccccCCCC
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVL--YWNNQDQINALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~--d~~~~~~~~~~~~~ 139 (232)
.++. +||=.|+|+ |.+.+.+|+. |+..++++|.++.-.... +..+.. .-+..... ++.... .....+.
T Consensus 192 ~~g~--~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a---~~lGa~--~~i~~~~~~~~~~~~v-~~~~~~g 263 (378)
T PLN02827 192 SKGS--SVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA---KTFGVT--DFINPNDLSEPIQQVI-KRMTGGG 263 (378)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH---HHcCCc--EEEcccccchHHHHHH-HHHhCCC
Confidence 3577 888889876 6666666665 775688998776311111 111211 00110000 000000 0001125
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
+|+|+-+- .. ...+....+.+++| |++++..
T Consensus 264 ~d~vid~~--G~----~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 264 ADYSFECV--GD----TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCEEEECC--CC----hHHHHHHHHhhccCCCEEEEEC
Confidence 89888532 21 23456677788888 9988754
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=7 Score=33.85 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=27.9
Q ss_pred cCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
...+ +||=+|||. |. ++..+++.|.++++.+|.+.
T Consensus 22 L~~~--~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREK--HVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCC--cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3556 899999996 55 55777788988999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 232 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 7e-23 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 2e-04 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 93.0 bits (230), Expect = 7e-23
Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 46/245 (18%)
Query: 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAG 77
+ +Q + VW + LA + + ELGAG
Sbjct: 45 VQVQTTQEHPLWTSHVWSGARALADTLCW-------------QPELIAG--KTVCELGAG 89
Query: 78 CGAAGMAFYLLGLADIVLTDIS--PVMPALKHNLKRNKP-------VLNKSLKTSVLYWN 128
G + +L G +V TD ++ +L+ N++ + V S K W
Sbjct: 90 AGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWG 149
Query: 129 N---QDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVA-----DDGVVLLGYQLRS 180
+ Q F +V+ AD++ ++ L+R+++ L+A V L+ +
Sbjct: 150 DSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR 209
Query: 181 P---EAHKLFWEMCAEV-FLIEKVPHEDLHPDYGYEETD----------VYILRKKKKEE 226
P E F+ + LI + L D + + + LR +
Sbjct: 210 PHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVCIRGQVHRWRLRWRSAAS 269
Query: 227 EEENV 231
N+
Sbjct: 270 ASANI 274
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 2e-04
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 19/163 (11%)
Query: 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYW 127
+ +LGAG G LLG +++ ++ + L NL K +
Sbjct: 51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG------ 104
Query: 128 NNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAH--K 185
++ D+VI + A ++A D V + K
Sbjct: 105 ----DVSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPEVRRFIEK 160
Query: 186 LFWEMCAEVFLIEKVPHEDLHPDYG-----YEETDVYILRKKK 223
WE V E + + E V I R K
Sbjct: 161 FSWEHGFVVTHRLTTKIE-IPLQFFFHRKKLERITVDIYRFSK 202
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 232 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.87 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.72 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.68 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.66 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.64 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.64 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.64 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.63 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.63 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.63 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.63 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.62 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.61 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.6 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.59 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.59 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.59 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.59 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.59 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.59 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.59 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.59 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.59 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.58 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.58 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.58 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.58 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.58 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.57 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.57 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.57 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.57 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.57 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.57 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.56 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.56 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.56 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.56 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.56 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.55 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.55 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.55 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.55 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.55 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.54 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.54 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.54 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.54 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.54 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.54 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.53 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.53 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.53 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.52 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.52 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.52 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.52 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.51 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.51 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.51 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.5 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.5 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.5 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.5 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.5 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.49 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.49 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.49 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.49 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.49 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.49 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.49 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.49 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.49 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.48 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.48 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.48 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.48 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.48 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.47 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.47 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.47 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.47 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.46 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.46 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.46 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.46 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.45 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.45 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.45 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.45 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.45 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.44 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.44 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.44 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.44 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.44 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.43 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.43 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.42 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.42 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.42 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.42 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.41 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.41 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.41 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.41 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.4 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.4 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.4 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.4 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.4 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.4 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.4 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.39 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.39 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.38 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.38 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.38 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.37 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.37 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.37 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.37 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.37 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.36 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.36 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.35 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.35 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.35 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.35 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.35 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.35 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.35 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.35 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.34 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.34 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.34 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.34 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.34 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.34 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.33 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.33 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.33 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.33 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.33 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.33 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.32 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.31 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.31 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.3 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.3 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.3 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.3 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.3 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.3 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.29 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.29 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.29 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.28 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.28 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.28 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.28 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.28 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.28 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.27 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.26 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.26 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.25 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.25 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.25 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.24 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.23 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.23 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.23 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.22 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.21 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.21 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.21 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.21 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.2 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.2 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.2 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.2 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.19 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.19 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.19 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.19 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.19 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.18 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.18 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.18 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.18 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.18 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.17 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.17 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.17 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.16 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.16 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.15 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.15 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.15 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.13 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.13 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.13 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.13 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.13 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.12 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.12 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.11 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.11 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.1 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.09 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.08 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.08 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.08 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.07 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.07 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.06 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.06 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.04 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.04 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.04 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.03 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.03 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.02 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.01 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.01 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.99 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.98 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.98 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.98 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.97 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.96 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.96 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.95 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.93 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.93 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.92 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.91 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.9 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.9 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.84 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.78 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.77 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.76 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.72 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.71 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.69 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.68 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.65 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.62 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.6 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.6 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.59 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.59 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.5 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.48 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.47 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.44 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.43 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.35 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.34 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.29 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.26 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.26 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.24 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.1 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.07 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.04 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.99 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.99 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.95 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.92 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.83 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.81 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.74 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.68 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.68 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.6 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.58 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.41 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.36 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.32 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.3 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.26 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.89 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.86 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.83 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.82 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.78 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.72 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 96.34 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.32 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.24 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.08 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.0 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.62 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.52 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.44 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.21 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.16 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.1 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.0 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 93.98 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.95 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.69 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.54 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 93.1 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.91 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.74 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.62 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.57 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 92.56 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 92.56 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 92.51 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 92.47 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.47 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.44 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.28 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.85 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.84 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.65 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 91.63 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.53 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 91.43 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 91.4 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 91.3 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.2 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.19 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.14 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.98 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 90.95 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.79 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 90.71 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 90.52 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.11 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.1 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.81 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 89.75 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 89.75 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 89.39 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.22 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.1 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.98 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 88.91 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.89 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 88.82 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 88.7 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 88.65 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.65 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 88.63 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 88.55 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 88.5 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 88.29 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 88.07 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 88.04 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 87.92 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 87.91 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 87.9 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 87.58 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 87.51 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 87.48 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 87.3 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 87.02 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.7 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.13 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 86.01 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 85.98 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 85.96 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 85.79 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 85.79 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 85.77 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.58 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 85.52 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 85.44 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 85.39 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 85.34 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 85.08 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 84.96 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 84.87 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 84.42 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 84.27 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 84.11 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 84.11 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.02 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 83.93 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 83.88 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 83.86 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 83.81 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 83.53 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 83.47 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 83.35 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 82.95 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 82.94 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 82.85 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 82.73 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 82.49 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 82.05 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 81.73 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 81.73 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 81.45 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 81.41 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 81.27 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 81.16 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 80.94 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 80.91 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 80.84 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 80.62 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 80.6 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 80.55 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 80.49 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 80.47 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 80.38 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.35 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 80.22 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 80.17 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 80.16 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-21 Score=158.96 Aligned_cols=198 Identities=20% Similarity=0.358 Sum_probs=127.5
Q ss_pred EEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEc
Q 026858 18 LSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTD 97 (232)
Q Consensus 18 ~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D 97 (232)
..++.......+|..+|+++..|++++..... ..+++ +|||||||+|.+++.+++.++.+|+++|
T Consensus 45 ~~~~i~g~~~~~g~~~~~~~~~l~~~l~~~~~-------------~~~~~--~vLDlG~G~G~~~~~~a~~~~~~v~~~D 109 (281)
T 3bzb_A 45 VQVQTTQEHPLWTSHVWSGARALADTLCWQPE-------------LIAGK--TVCELGAGAGLVSIVAFLAGADQVVATD 109 (281)
T ss_dssp EEEECC-----------CHHHHHHHHHHHCGG-------------GTTTC--EEEETTCTTSHHHHHHHHTTCSEEEEEE
T ss_pred eEEEECCCCCCCCceeecHHHHHHHHHHhcch-------------hcCCC--eEEEecccccHHHHHHHHcCCCEEEEEe
Confidence 55555544567788999999999999998754 45777 9999999999999999988766999999
Q ss_pred c-hh-HHHHHHHHHHhcCCC---CC----CceEEEEeecCCCcc-ccc--CCCCccEEEEcccCCCcccHHHHHHHHHHh
Q 026858 98 I-SP-VMPALKHNLKRNKPV---LN----KSLKTSVLYWNNQDQ-INA--LKPPFDLVIAADVVYIEESAAQLVRAMEAL 165 (232)
Q Consensus 98 ~-s~-~~~~~~~n~~~~~~~---~~----~~i~~~~~d~~~~~~-~~~--~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~ 165 (232)
+ ++ ++..++.|...|... +. .++.+..++|++... ... ..++||+|++++++|+......+++.+.++
T Consensus 110 ~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~ 189 (281)
T 3bzb_A 110 YPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKML 189 (281)
T ss_dssp CSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHH
Confidence 9 77 677888888554211 11 357888888887532 111 246899999999999999999999999999
Q ss_pred hC---C--CcEEEEEEeecCh---hHHHHHHHHHh-cC-ceEEEecCC-CCCCCCC--------CCceEEEEEEecCcch
Q 026858 166 VA---D--DGVVLLGYQLRSP---EAHKLFWEMCA-EV-FLIEKVPHE-DLHPDYG--------YEETDVYILRKKKKEE 226 (232)
Q Consensus 166 l~---p--gG~l~i~~~~r~~---~~~~~~~~~~~-~~-f~~~~~~~~-~~~~~~~--------~~~~~l~~~~~~~~~~ 226 (232)
|+ | ||+++++...+.+ .....|++.+. .+ |.++.+... .+...|. ...+++|.+++++...
T Consensus 190 Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~~f~~~~~~~~~r~~V~~~~l~~~~~~~ 269 (281)
T 3bzb_A 190 LALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPDDPGDVCIRGQVHRWRLRWRSAAS 269 (281)
T ss_dssp BCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEECCC------------------CEEEEEEEC----
T ss_pred hcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEeccccccccccccCCcchhccceEEEEEEEcccccc
Confidence 99 9 9998887655442 12345666665 48 998888432 2333332 2357788888876555
Q ss_pred hhcc
Q 026858 227 EEEN 230 (232)
Q Consensus 227 ~~~~ 230 (232)
+..|
T Consensus 270 ~~~~ 273 (281)
T 3bzb_A 270 ASAN 273 (281)
T ss_dssp ----
T ss_pred cccc
Confidence 4444
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-16 Score=129.53 Aligned_cols=161 Identities=15% Similarity=0.115 Sum_probs=116.9
Q ss_pred eecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCccccc-CCCCCcEEEeCccccHHHHHHHHhCC
Q 026858 12 PIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDF-HSTRRRAIELGAGCGAAGMAFYLLGL 90 (232)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~VLElGcGtG~~s~~la~~~~ 90 (232)
.+.++.++|.|..+.+..+. .+..|+.|+. .. ++. +|||+|||+|..++.+++.+.
T Consensus 16 ~~~~~~~~i~q~~~~~~~~~----d~~ll~~~~~-----------------~~~~~~--~vLDlG~G~G~~~~~la~~~~ 72 (259)
T 3lpm_A 16 YLLAENLRIIQSPSVFSFSI----DAVLLAKFSY-----------------LPIRKG--KIIDLCSGNGIIPLLLSTRTK 72 (259)
T ss_dssp EETTTTEEEEEBTTTBCCCH----HHHHHHHHCC-----------------CCSSCC--EEEETTCTTTHHHHHHHTTCC
T ss_pred cccCCCEEEEeCCCCccCcH----HHHHHHHHhc-----------------CCCCCC--EEEEcCCchhHHHHHHHHhcC
Confidence 35567899999987666653 3777777762 22 456 999999999999999998865
Q ss_pred CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-----------------
Q 026858 91 ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE----------------- 152 (232)
Q Consensus 91 ~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----------------- 152 (232)
.+|+++|+++ ++..+++|+..+. +..++.+...|+..... ....++||+|+++++++..
T Consensus 73 ~~v~gvDi~~~~~~~a~~n~~~~~--~~~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~ 149 (259)
T 3lpm_A 73 AKIVGVEIQERLADMAKRSVAYNQ--LEDQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARH 149 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTT--CTTTEEEECSCGGGGGG-TSCTTCEEEEEECCCC--------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHCC--CcccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhc
Confidence 5999999998 5778888888776 44567888887765432 1124689999998877544
Q ss_pred ---ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 153 ---ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 153 ---~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
.....+++.+.++|+|||+++++..... ...+...+. .+|....+.
T Consensus 150 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 150 EVMCTLEDTIRVAASLLKQGGKANFVHRPER---LLDIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp ---HHHHHHHHHHHHHEEEEEEEEEEECTTT---HHHHHHHHHHTTEEEEEEE
T ss_pred cccCCHHHHHHHHHHHccCCcEEEEEEcHHH---HHHHHHHHHHCCCceEEEE
Confidence 2356799999999999999999764333 445556555 478766654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-15 Score=129.66 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=117.5
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+++.+.|+.+++...+|.+.. .+..+.+..+.+++....... ..++. +|||+|||+|.+++.+++
T Consensus 188 ~~~~~~~g~~~~~~~~pgvFs~-~~~d~~t~~ll~~l~~~l~~~-----------~~~~~--~VLDlGcG~G~~~~~la~ 253 (381)
T 3dmg_A 188 AFSARILGAEYTFHHLPGVFSA-GKVDPASLLLLEALQERLGPE-----------GVRGR--QVLDLGAGYGALTLPLAR 253 (381)
T ss_dssp EEEEEETTEEEEEEECTTCTTT-TSCCHHHHHHHHHHHHHHCTT-----------TTTTC--EEEEETCTTSTTHHHHHH
T ss_pred eeeEEecCceEEEEeCCCceeC-CCCCHHHHHHHHHHHHhhccc-----------CCCCC--EEEEEeeeCCHHHHHHHH
Confidence 6778889999999999996554 445577788888887653100 23556 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCC-----cccHHHHHHH
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYI-----EESAAQLVRA 161 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~~ 161 (232)
.+. +|+++|+|+ ++..+++|...+... +.+...|+..... ..++||+|+++.+++. ......+++.
T Consensus 254 ~g~-~V~gvDis~~al~~A~~n~~~~~~~----v~~~~~D~~~~~~---~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~ 325 (381)
T 3dmg_A 254 MGA-EVVGVEDDLASVLSLQKGLEANALK----AQALHSDVDEALT---EEARFDIIVTNPPFHVGGAVILDVAQAFVNV 325 (381)
T ss_dssp TTC-EEEEEESBHHHHHHHHHHHHHTTCC----CEEEECSTTTTSC---TTCCEEEEEECCCCCTTCSSCCHHHHHHHHH
T ss_pred cCC-EEEEEECCHHHHHHHHHHHHHcCCC----eEEEEcchhhccc---cCCCeEEEEECCchhhcccccHHHHHHHHHH
Confidence 887 999999998 577888888877632 4677777655432 2368999999988876 5677899999
Q ss_pred HHHhhCCCcEEEEEEeec
Q 026858 162 MEALVADDGVVLLGYQLR 179 (232)
Q Consensus 162 l~~~l~pgG~l~i~~~~r 179 (232)
+.++|+|||.++++....
T Consensus 326 ~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 326 AAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp HHHHEEEEEEEEEEECTT
T ss_pred HHHhcCcCcEEEEEEcCC
Confidence 999999999999987544
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-14 Score=110.65 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=113.8
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.-.+.+..+.+....+.+.... ....+..+.+++ . ..++. +|||+|||+|..+..+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~----~-------------~~~~~--~vLdiG~G~G~~~~~~~~ 72 (194)
T 1dus_A 13 IVEDILRGKKLKFKTDSGVFSYGK-VDKGTKILVENV----V-------------VDKDD--DILDLGCGYGVIGIALAD 72 (194)
T ss_dssp EEEEEETTEEEEEEEETTSTTTTS-CCHHHHHHHHHC----C-------------CCTTC--EEEEETCTTSHHHHHHGG
T ss_pred EEeeecCCCceEEEeCCCcCCccc-cchHHHHHHHHc----c-------------cCCCC--eEEEeCCCCCHHHHHHHH
Confidence 688889999999988887554443 223344444443 2 22556 999999999999999988
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCC-ceEEEEeecCCCcccccCCCCccEEEEcccCCC-cccHHHHHHHHHH
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNK-SLKTSVLYWNNQDQINALKPPFDLVIAADVVYI-EESAAQLVRAMEA 164 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-~~~~~~~l~~l~~ 164 (232)
.+. +++++|+++ ++..++.+...+. ... ++.+...|+.... ..++||+|+++.++++ ......+++.+.+
T Consensus 73 ~~~-~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~ 145 (194)
T 1dus_A 73 EVK-STTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKE 145 (194)
T ss_dssp GSS-EEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHHH
T ss_pred cCC-eEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECchhccc----ccCCceEEEECCCcccchhHHHHHHHHHHH
Confidence 865 999999998 5677777776654 222 3788887776533 2457999999887765 4678899999999
Q ss_pred hhCCCcEEEEEEeecChhHHHHHHHHHhc
Q 026858 165 LVADDGVVLLGYQLRSPEAHKLFWEMCAE 193 (232)
Q Consensus 165 ~l~pgG~l~i~~~~r~~~~~~~~~~~~~~ 193 (232)
+|+|||.+++....... ...+.+.+.+
T Consensus 146 ~L~~gG~l~~~~~~~~~--~~~~~~~l~~ 172 (194)
T 1dus_A 146 LLKDNGEIWVVIQTKQG--AKSLAKYMKD 172 (194)
T ss_dssp HEEEEEEEEEEEESTHH--HHHHHHHHHH
T ss_pred HcCCCCEEEEEECCCCC--hHHHHHHHHH
Confidence 99999999998876532 3334454444
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-15 Score=120.18 Aligned_cols=103 Identities=13% Similarity=0.172 Sum_probs=82.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|..+..+++.+..+++++|+++. +..++++.. ..++.+...|+.... ...++||
T Consensus 42 ~~~~~--~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~---~~~~~fD 110 (253)
T 3g5l_A 42 DFNQK--TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIA---IEPDAYN 110 (253)
T ss_dssp CCTTC--EEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCC---CCTTCEE
T ss_pred ccCCC--EEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCC---CCCCCeE
Confidence 34667 99999999999999999887669999999984 444444322 235678887765432 2346899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++..++++..+...+++.+.++|+|||.+++..
T Consensus 111 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 111 VVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 99999999888999999999999999999999974
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-15 Score=119.39 Aligned_cols=131 Identities=17% Similarity=0.061 Sum_probs=98.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++..+. +|+++|+|+ ++..++++..... ...++.+...|+.... ..++||+|
T Consensus 66 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~fD~v 136 (235)
T 3lcc_A 66 PLG--RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWR----PTELFDLI 136 (235)
T ss_dssp CCE--EEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCC----CSSCEEEE
T ss_pred CCC--CEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCC----CCCCeeEE
Confidence 445 999999999999999988777 899999998 4666666654422 2245788888876644 23589999
Q ss_pred EEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeecC--------hhHHHHHHHHHhc-CceEEEecCCC
Q 026858 144 IAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQLRS--------PEAHKLFWEMCAE-VFLIEKVPHED 204 (232)
Q Consensus 144 i~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~--------~~~~~~~~~~~~~-~f~~~~~~~~~ 204 (232)
++..++++.. +...+++.+.++|+|||.+++...... ....+.+.+.+.. +|.+..+....
T Consensus 137 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 137 FDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208 (235)
T ss_dssp EEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred EEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence 9999998665 899999999999999999998754321 1234667777765 89887776543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=124.77 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=108.4
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
+.++.+.+..+++.+.+|.++. ..+...+..+.+++ . ..++. +|||+|||+|.+++.+++
T Consensus 183 ~~~~~~~~~~~~~~~~pg~Fs~-~~~d~~~~~ll~~l----~-------------~~~~~--~VLDlGcG~G~~s~~la~ 242 (375)
T 4dcm_A 183 TVSWKLEGTDWTIHNHANVFSR-TGLDIGARFFMQHL----P-------------ENLEG--EIVDLGCGNGVIGLTLLD 242 (375)
T ss_dssp CEEEEETTTTEEEEECTTCTTC-SSCCHHHHHHHHTC----C-------------CSCCS--EEEEETCTTCHHHHHHHH
T ss_pred ceEEEecCCceEEEeCCCcccC-CcccHHHHHHHHhC----c-------------ccCCC--eEEEEeCcchHHHHHHHH
Confidence 6789999999999999996654 34444455554444 2 22446 999999999999999998
Q ss_pred hC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-----ccHHHHHH
Q 026858 88 LG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-----ESAAQLVR 160 (232)
Q Consensus 88 ~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~ 160 (232)
.+ ..+|+++|+|+ ++..++.|...++.....++.+...|..... ..++||+|+++++++.. .....+++
T Consensus 243 ~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~ 318 (375)
T 4dcm_A 243 KNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFH 318 (375)
T ss_dssp HCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC----CTTCEEEEEECCCC-------CCHHHHHHH
T ss_pred HCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC----CCCCeeEEEECCCcccCcccCHHHHHHHHH
Confidence 83 34999999998 5778888888776221124666777665432 24589999999888642 33457899
Q ss_pred HHHHhhCCCcEEEEEEeec
Q 026858 161 AMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r 179 (232)
.+.++|+|||+++++....
T Consensus 319 ~~~~~LkpgG~l~iv~n~~ 337 (375)
T 4dcm_A 319 HARRCLKINGELYIVANRH 337 (375)
T ss_dssp HHHHHEEEEEEEEEEEETT
T ss_pred HHHHhCCCCcEEEEEEECC
Confidence 9999999999999987544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=121.89 Aligned_cols=107 Identities=9% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++..+. +++++|+++. +..++.+....... ...++.+...+..... ...++||
T Consensus 30 ~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D 103 (235)
T 3sm3_A 30 EDD--EILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLS---FHDSSFD 103 (235)
T ss_dssp TTC--EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCC---SCTTCEE
T ss_pred CCC--eEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccC---CCCCcee
Confidence 566 999999999999999998887 9999999984 55666655443311 1234677776665432 2356899
Q ss_pred EEEEcccCCCcccHH---HHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAA---QLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~---~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+++.++++..+.. .+++.+.++|+|||.+++...
T Consensus 104 ~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (235)
T 3sm3_A 104 FAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142 (235)
T ss_dssp EEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence 999999998776666 899999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=122.87 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=87.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..+++. +. +++++|+|+ ++..++++....+ +..++.+...|+.... . .++|
T Consensus 34 ~~~~~--~VLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~---~-~~~f 104 (256)
T 1nkv_A 34 MKPGT--RILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGYV---A-NEKC 104 (256)
T ss_dssp CCTTC--EEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTCC---C-SSCE
T ss_pred CCCCC--EEEEECCCCCHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECChHhCC---c-CCCC
Confidence 44667 9999999999999988876 66 999999998 5667777666554 3346788888776543 2 5689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|++..++++..+...+++.+.++|+|||++++...
T Consensus 105 D~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 105 DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp EEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 9999999998888889999999999999999999864
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=119.16 Aligned_cols=157 Identities=20% Similarity=0.186 Sum_probs=114.8
Q ss_pred cCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcE
Q 026858 14 RDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADI 93 (232)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v 93 (232)
....+.+..+++ ...+...++.+..+.+++..... ++. +|||+|||+|..+..+++.+..++
T Consensus 25 ~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~l~~~~~---------------~~~--~vLDiG~G~G~~~~~l~~~~~~~v 86 (205)
T 3grz_A 25 FKDQEIIRLDPG-LAFGTGNHQTTQLAMLGIERAMV---------------KPL--TVADVGTGSGILAIAAHKLGAKSV 86 (205)
T ss_dssp STTCEEEEESCC------CCHHHHHHHHHHHHHHCS---------------SCC--EEEEETCTTSHHHHHHHHTTCSEE
T ss_pred CCCceeEEecCC-cccCCCCCccHHHHHHHHHHhcc---------------CCC--EEEEECCCCCHHHHHHHHCCCCEE
Confidence 455667777777 44444567888888888887654 567 999999999999999998876699
Q ss_pred EEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEE
Q 026858 94 VLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVV 172 (232)
Q Consensus 94 ~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l 172 (232)
+++|+++ ++..++++...+.. .. +.+...|+.... .++||+|+++.++. .+..+++.+.++|+|||++
T Consensus 87 ~~vD~s~~~~~~a~~~~~~~~~--~~-v~~~~~d~~~~~-----~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~gG~l 155 (205)
T 3grz_A 87 LATDISDESMTAAEENAALNGI--YD-IALQKTSLLADV-----DGKFDLIVANILAE---ILLDLIPQLDSHLNEDGQV 155 (205)
T ss_dssp EEEESCHHHHHHHHHHHHHTTC--CC-CEEEESSTTTTC-----CSCEEEEEEESCHH---HHHHHGGGSGGGEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHcCC--Cc-eEEEeccccccC-----CCCceEEEECCcHH---HHHHHHHHHHHhcCCCCEE
Confidence 9999998 56777777776652 22 677777765432 46899999976553 3578899999999999999
Q ss_pred EEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 173 LLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 173 ~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
++...... ....+.+.+. .+|.+....
T Consensus 156 ~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 156 IFSGIDYL--QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp EEEEEEGG--GHHHHHHHHHHTTEEEEEEE
T ss_pred EEEecCcc--cHHHHHHHHHHcCCceEEee
Confidence 99865554 2455666665 489887764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=115.61 Aligned_cols=144 Identities=14% Similarity=0.168 Sum_probs=102.0
Q ss_pred CCCCCcEEEeCcc-ccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAG-CGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcG-tG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+||| +|.+++.+++. +. +|+++|+++ ++..+++|...++. ++.+...|+...... ..++||
T Consensus 55 ~~~--~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~----~v~~~~~d~~~~~~~--~~~~fD 125 (230)
T 3evz_A 55 GGE--VALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNS----NVRLVKSNGGIIKGV--VEGTFD 125 (230)
T ss_dssp SSC--EEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTC----CCEEEECSSCSSTTT--CCSCEE
T ss_pred CCC--EEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCC----CcEEEeCCchhhhhc--ccCcee
Confidence 667 99999999 99999999988 65 999999998 57788888887753 467788776433322 236899
Q ss_pred EEEEcccCCCccc-------------------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 142 LVIAADVVYIEES-------------------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 142 ~Ii~~~~~~~~~~-------------------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
+|+++.+++.... ...+++.+.++|+|||++++....+. .....+.+.+. .+|.+..+.
T Consensus 126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCceEEEE
Confidence 9998877654322 47889999999999999999765443 34556666665 488887775
Q ss_pred CCCCCCCCCCCceEEEEEEecC
Q 026858 202 HEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
... ......++.+.+..
T Consensus 205 ~~~-----g~~~~~~l~f~~~~ 221 (230)
T 3evz_A 205 FKV-----GTRWRHSLIFFKGI 221 (230)
T ss_dssp ECC-----CC-CEEEEEEECCC
T ss_pred ecC-----CCeEEEEEEEeccc
Confidence 322 23334555555543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.62 E-value=9.4e-15 Score=115.83 Aligned_cols=151 Identities=11% Similarity=0.042 Sum_probs=99.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCC---------CCCCceEEEEeecCCCcccc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKP---------VLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~---------~~~~~i~~~~~d~~~~~~~~ 134 (232)
++. +|||+|||+|..+..+++.|+ +|+++|+|+ ++..++++...... ....++.+...|......
T Consensus 22 ~~~--~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~-- 96 (203)
T 1pjz_A 22 PGA--RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA-- 96 (203)
T ss_dssp TTC--EEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--
T ss_pred CCC--EEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc--
Confidence 556 999999999999999999998 999999999 45555544321100 002346788887655432
Q ss_pred cCC-CCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeecC---------hhHHHHHHHHHhcCceEEEecC
Q 026858 135 ALK-PPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLRS---------PEAHKLFWEMCAEVFLIEKVPH 202 (232)
Q Consensus 135 ~~~-~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r~---------~~~~~~~~~~~~~~f~~~~~~~ 202 (232)
.+ ++||+|++..++++. .....+++.++++|+|||++++...... ....+.+.+.+..+|++..+..
T Consensus 97 -~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~gf~i~~~~~ 175 (203)
T 1pjz_A 97 -RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGG 175 (203)
T ss_dssp -HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEE
T ss_pred -ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcCCcEEEEecc
Confidence 22 579999998777533 4567789999999999999555432211 0124556666666898877765
Q ss_pred CCCCCC--------CCCCceEEEEEEe
Q 026858 203 EDLHPD--------YGYEETDVYILRK 221 (232)
Q Consensus 203 ~~~~~~--------~~~~~~~l~~~~~ 221 (232)
...... +..-...+|.+++
T Consensus 176 ~~~~~~~p~~~~~g~~~~~~~~~~~~~ 202 (203)
T 1pjz_A 176 QDTLHSSARGLKAGLERMDEHVYVLER 202 (203)
T ss_dssp SSCTTTCHHHHHHTCSSCCEEEEEEEE
T ss_pred ccchhcchhhhhcCcchhheeEEEEEe
Confidence 443221 2233456776654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=117.51 Aligned_cols=107 Identities=12% Similarity=0.165 Sum_probs=87.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+|..+..+++.+..+|+++|+|+ ++..++++...++ +..++.+...|+.... ...++||+
T Consensus 45 ~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~---~~~~~fD~ 117 (257)
T 3f4k_A 45 TDDA--KIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMDNLP---FQNEELDL 117 (257)
T ss_dssp CTTC--EEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCS---SCTTCEEE
T ss_pred CCCC--eEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCC---CCCCCEEE
Confidence 3566 9999999999999999988534999999998 5667777776655 4456788888875433 23468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|++..++++. +...+++.+.++|+|||++++....
T Consensus 118 v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 118 IWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp EEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred EEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 9999999887 7899999999999999999998753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-15 Score=121.51 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh----CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL----GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
++. +|||||||+|..++.+++. ++ +|+++|+|+ +++.+++++.... ...++.+...|..+.+ .+.
T Consensus 70 ~~~--~vLDlGcGtG~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~~D~~~~~-----~~~ 139 (261)
T 4gek_A 70 PGT--QVYDLGCSLGAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIA-----IEN 139 (261)
T ss_dssp TTC--EEEEETCTTTHHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCTTTCC-----CCS
T ss_pred CCC--EEEEEeCCCCHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhc--cCceEEEeeccccccc-----ccc
Confidence 677 9999999999999999875 45 899999999 5667777665544 3456788887765433 246
Q ss_pred ccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 140 FDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 140 fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
||+|+++.++++. .+...+++.++++|+|||++++.+..+.
T Consensus 140 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~ 182 (261)
T 4gek_A 140 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 182 (261)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence 9999999988754 4566899999999999999999876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=121.19 Aligned_cols=107 Identities=16% Similarity=0.286 Sum_probs=87.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++..+. +++++|+++ ++..++++....+ +..++.+...|+..... ..+++||+|
T Consensus 68 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~~fD~v 140 (285)
T 4htf_A 68 QKL--RVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVAS--HLETPVDLI 140 (285)
T ss_dssp SCC--EEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGG--GCSSCEEEE
T ss_pred CCC--EEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhh--hcCCCceEE
Confidence 345 999999999999999998887 999999998 4666776666544 33567888887765442 234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++++..+...+++.+.++|+|||.+++....
T Consensus 141 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 141 LFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 99999998889999999999999999999998754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=117.41 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=100.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.+. +++++|+++. +..++.+. + +.+...++.... ..++||+|
T Consensus 43 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--~-------~~~~~~d~~~~~----~~~~fD~v 106 (211)
T 3e23_A 43 AGA--KILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL--G-------RPVRTMLFHQLD----AIDAYDAV 106 (211)
T ss_dssp TTC--EEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH--T-------SCCEECCGGGCC----CCSCEEEE
T ss_pred CCC--cEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc--C-------CceEEeeeccCC----CCCcEEEE
Confidence 556 999999999999999998887 9999999984 55555544 1 133444443322 35689999
Q ss_pred EEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeecCh------------hHHHHHHHHHhc-C-ceEEEecCCCCCC
Q 026858 144 IAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQLRSP------------EAHKLFWEMCAE-V-FLIEKVPHEDLHP 207 (232)
Q Consensus 144 i~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~~------------~~~~~~~~~~~~-~-f~~~~~~~~~~~~ 207 (232)
++..++++.. +...+++.+.++|+|||.+++....... ...+.+.+.+.+ | |.+..+.......
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~ 186 (211)
T 3e23_A 107 WAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKG 186 (211)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEEC
T ss_pred EecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCC
Confidence 9999998665 8889999999999999999998653321 235667777765 8 9877765433222
Q ss_pred CCCCCceEEEEEEecCc
Q 026858 208 DYGYEETDVYILRKKKK 224 (232)
Q Consensus 208 ~~~~~~~~l~~~~~~~~ 224 (232)
........++.+.++.+
T Consensus 187 ~~~~~~~wl~~~~~~~~ 203 (211)
T 3e23_A 187 FDQELAQFLHVSVRKPE 203 (211)
T ss_dssp TTSCEEEEEEEEEECCC
T ss_pred CCCCCceEEEEEEecCc
Confidence 22233444555555544
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=117.26 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=93.6
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHH
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLK 110 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~ 110 (232)
.++.+..+.+.+.+... ..++. +|||||||+|..+..+++. +. +|+++|+|+. +..++.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~-------------~~~~~--~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~ 99 (266)
T 3ujc_A 36 ISSGGLEATKKILSDIE-------------LNENS--KVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVS 99 (266)
T ss_dssp CSTTHHHHHHHHTTTCC-------------CCTTC--EEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCC
T ss_pred cccchHHHHHHHHHhcC-------------CCCCC--EEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhh
Confidence 45555566666665554 45677 9999999999999999886 76 9999999984 444443222
Q ss_pred hcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 111 RNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 111 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
. . .++.+...|+.... ...++||+|++..++++. .+...+++.+.++|+|||.+++.....
T Consensus 100 ~----~-~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (266)
T 3ujc_A 100 G----N-NKIIFEANDILTKE---FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA 162 (266)
T ss_dssp S----C-TTEEEEECCTTTCC---CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred c----C-CCeEEEECccccCC---CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 1 1 45788888776543 235689999999999887 899999999999999999999987543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=115.94 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=86.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||+|||+|.+++.++..+..+|+++|+|+ ++..+++|...+.. .++.+...|+..... ....++||+
T Consensus 43 ~~~~--~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~fD~ 116 (189)
T 3p9n_A 43 LTGL--AVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL---SGATLRRGAVAAVVA-AGTTSPVDL 116 (189)
T ss_dssp CTTC--EEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC---SCEEEEESCHHHHHH-HCCSSCCSE
T ss_pred CCCC--EEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC---CceEEEEccHHHHHh-hccCCCccE
Confidence 3667 9999999999999988877776899999998 57788888877652 457787777644321 011468999
Q ss_pred EEEcccCCCc-ccHHHHHHHHHH--hhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE-ESAAQLVRAMEA--LVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~-~~~~~~l~~l~~--~l~pgG~l~i~~~~r~ 180 (232)
|+++.+++.. .....++..+.+ +|+|||.+++....+.
T Consensus 117 i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 117 VLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred EEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 9998776653 678999999999 9999999999876554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=118.77 Aligned_cols=108 Identities=14% Similarity=0.210 Sum_probs=87.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..+++. ++ +++++|+++ ++..++++....+ +..++.+...|+.... ..+++|
T Consensus 80 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~---~~~~~f 151 (297)
T 2o57_A 80 LQRQA--KGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIP---CEDNSY 151 (297)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCS---SCTTCE
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCcccCC---CCCCCE
Confidence 34667 9999999999999999876 77 999999998 4666666665544 3456788888776533 234689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|+|++..++++..+...+++.+.++|+|||.+++....
T Consensus 152 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 152 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 99999999988888999999999999999999998754
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-14 Score=117.05 Aligned_cols=106 Identities=14% Similarity=0.158 Sum_probs=85.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..+++. ++ +|+++|+|+ ++..++++...++ +..++.+...|+... +++|
T Consensus 70 ~~~~~--~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~------~~~f 138 (302)
T 3hem_A 70 LEPGM--TLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF------DEPV 138 (302)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC------CCCC
T ss_pred CCCcC--EEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc------CCCc
Confidence 44667 9999999999999999887 86 999999998 4667777766654 444678888776432 5789
Q ss_pred cEEEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+|++..++++. .....+++.+.++|+|||++++.....
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 999999998766 456899999999999999999987654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.9e-14 Score=115.45 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=83.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHH-HhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFY-LLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la-~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..++ ..++ +|+++|+|+. +..++++....+ ...++.+...|+... +++|
T Consensus 62 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~------~~~f 130 (287)
T 1kpg_A 62 LQPGM--TLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQF------DEPV 130 (287)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGGC------CCCC
T ss_pred CCCcC--EEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhhC------CCCe
Confidence 44667 99999999999999888 4577 9999999984 566666655443 334577777766321 2689
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|+|++..++++. .+...+++.+.++|+|||.+++.....
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 999999999766 688999999999999999999987554
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-14 Score=109.22 Aligned_cols=129 Identities=10% Similarity=0.040 Sum_probs=86.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +|+++|+|+ ++..++++...++ + .++.+...+...... ...++||+|
T Consensus 22 ~~~--~vLDiGcG~G~~~~~la~~~~-~v~~vD~s~~~l~~a~~~~~~~~--~-~~v~~~~~~~~~l~~--~~~~~fD~v 93 (185)
T 3mti_A 22 DES--IVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLG--I-ENTELILDGHENLDH--YVREPIRAA 93 (185)
T ss_dssp TTC--EEEESCCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHHT--C-CCEEEEESCGGGGGG--TCCSCEEEE
T ss_pred CCC--EEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcC--C-CcEEEEeCcHHHHHh--hccCCcCEE
Confidence 667 999999999999999998865 999999998 5677777777665 2 346666644332211 124679999
Q ss_pred EEcccCCC---------cccHHHHHHHHHHhhCCCcEEEEEEeecCh------hHHHHHHHHHh-cCceEEEec
Q 026858 144 IAADVVYI---------EESAAQLVRAMEALVADDGVVLLGYQLRSP------EAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~---------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~------~~~~~~~~~~~-~~f~~~~~~ 201 (232)
+++..... ......+++.+.++|+|||++++.....++ .....+.+.+. .+|.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 167 (185)
T 3mti_A 94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQ 167 (185)
T ss_dssp EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEE
T ss_pred EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEeh
Confidence 98743322 245567889999999999999987653321 11233333333 367766654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-14 Score=117.34 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=87.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+|..+..+++.+..+|+++|+|+ ++..++++....+ +..++.+...|+.... ...++||+
T Consensus 45 ~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~---~~~~~fD~ 117 (267)
T 3kkz_A 45 TEKS--LIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGSMDDLP---FRNEELDL 117 (267)
T ss_dssp CTTC--EEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCC---CCTTCEEE
T ss_pred CCCC--EEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcChhhCC---CCCCCEEE
Confidence 3566 9999999999999999988555999999998 4667777766655 4456888888885543 23468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|++..++++. +...+++.+.++|+|||.+++....
T Consensus 118 i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 118 IWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp EEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred EEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 9999999877 7899999999999999999998753
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-14 Score=116.61 Aligned_cols=105 Identities=13% Similarity=0.126 Sum_probs=84.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|.++..++..+. +++++|+|+ ++..++++...++ . .++.+...|..... ..+++||+|
T Consensus 37 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~--~-~~v~~~~~d~~~l~---~~~~~fD~V 107 (260)
T 1vl5_A 37 GNE--EVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNG--H-QQVEYVQGDAEQMP---FTDERFHIV 107 (260)
T ss_dssp SCC--EEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTT--C-CSEEEEECCC-CCC---SCTTCEEEE
T ss_pred CCC--EEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcC--C-CceEEEEecHHhCC---CCCCCEEEE
Confidence 556 999999999999999998876 999999998 4666666665543 1 24677777765432 234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+++.++++..+...+++.+.++|+|||.+++....
T Consensus 108 ~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 108 TCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 99999998899999999999999999999997543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=117.88 Aligned_cols=155 Identities=25% Similarity=0.265 Sum_probs=112.0
Q ss_pred CeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEE
Q 026858 15 DALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIV 94 (232)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~ 94 (232)
...+.++-+++ ...|...++.+..+.+++..... ++. +|||+|||+|.+++.+++.++ +|+
T Consensus 86 ~~~~~~~l~p~-~~fgtg~~~tt~~~~~~l~~~~~---------------~~~--~VLDiGcG~G~l~~~la~~g~-~v~ 146 (254)
T 2nxc_A 86 GAEIPLVIEPG-MAFGTGHHETTRLALKALARHLR---------------PGD--KVLDLGTGSGVLAIAAEKLGG-KAL 146 (254)
T ss_dssp SSSEEEECCCC------CCSHHHHHHHHHHHHHCC---------------TTC--EEEEETCTTSHHHHHHHHTTC-EEE
T ss_pred CCceEEEECCC-ccccCCCCHHHHHHHHHHHHhcC---------------CCC--EEEEecCCCcHHHHHHHHhCC-eEE
Confidence 34466777777 55666677888888888876643 567 999999999999999999888 999
Q ss_pred EEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 95 LTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 95 ~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
++|+++ ++..++.|...+... +.+...++... . ..++||+|+++... ..+..++..+.++|+|||+++
T Consensus 147 gvDi~~~~v~~a~~n~~~~~~~----v~~~~~d~~~~--~--~~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~li 215 (254)
T 2nxc_A 147 GVDIDPMVLPQAEANAKRNGVR----PRFLEGSLEAA--L--PFGPFDLLVANLYA---ELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp EEESCGGGHHHHHHHHHHTTCC----CEEEESCHHHH--G--GGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCc----EEEEECChhhc--C--cCCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEE
Confidence 999998 578888888877522 46665554331 1 13579999986432 346789999999999999999
Q ss_pred EEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 174 LGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 174 i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
++..... ....+.+.+. .+|.+....
T Consensus 216 ls~~~~~--~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 216 LTGILKD--RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEEEGG--GHHHHHHHHHHTTCEEEEEE
T ss_pred EEeeccC--CHHHHHHHHHHCCCEEEEEe
Confidence 9875543 2455666665 489887664
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=127.29 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=87.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++++ +|||||||+|++++.+|+.|+.+|+++|.|+++..++++++.|+ +..+|.+...+..... .++++|+
T Consensus 81 ~~~~k--~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~--~~~~i~~i~~~~~~~~----lpe~~Dv 152 (376)
T 4hc4_A 81 ALRGK--TVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNG--LEDRVHVLPGPVETVE----LPEQVDA 152 (376)
T ss_dssp HHTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTT--CTTTEEEEESCTTTCC----CSSCEEE
T ss_pred hcCCC--EEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcC--CCceEEEEeeeeeeec----CCccccE
Confidence 56889 99999999999999999999989999999987778888888887 5677888888776543 3468999
Q ss_pred EEE---cccCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIA---ADVVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~---~~~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
||+ ...+.+...++.++....++|+|||.++-
T Consensus 153 ivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 153 IVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp EECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred EEeecccccccccchhhhHHHHHHhhCCCCceECC
Confidence 997 44556777899999999999999998664
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=111.79 Aligned_cols=125 Identities=11% Similarity=0.056 Sum_probs=94.0
Q ss_pred CCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+. +|||+|||+|..+..++..+. +++++|+++. +..++.+ . .++.+...|+.... ...++||+|+
T Consensus 42 ~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~----~----~~~~~~~~d~~~~~---~~~~~fD~v~ 107 (203)
T 3h2b_A 42 DG--VILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQT----H----PSVTFHHGTITDLS---DSPKRWAGLL 107 (203)
T ss_dssp CS--CEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHH----C----TTSEEECCCGGGGG---GSCCCEEEEE
T ss_pred CC--eEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHh----C----CCCeEEeCcccccc---cCCCCeEEEE
Confidence 45 999999999999999998887 9999999984 4444443 1 13466766664432 2357899999
Q ss_pred EcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeecCh-------------hHHHHHHHHHhc-CceEEEecCCC
Q 026858 145 AADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQLRSP-------------EAHKLFWEMCAE-VFLIEKVPHED 204 (232)
Q Consensus 145 ~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~~-------------~~~~~~~~~~~~-~f~~~~~~~~~ 204 (232)
+..++++.. +...+++.+.++|+|||.+++....... .....+.+.+.+ ||++..+....
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 108 AWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp EESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred ehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 999998664 8999999999999999999998644321 224566676664 89988876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=114.29 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=84.8
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||+|||+|..+..+++. +. +++++|+++ ++..++.+..... ...++.+...|+.... ...++||+|+++.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDF-SIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHNIP---IEDNYADLIVSRG 119 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEE-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTBCS---SCTTCEEEEEEES
T ss_pred EEEEECCCCCHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHHCC---CCcccccEEEECc
Confidence 8999999999999999887 54 999999998 5667777766654 3446788888775533 2346899999999
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++++..+...+++.+.++|+|||.+++...
T Consensus 120 ~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 120 SVFFWEDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence 999889999999999999999999999853
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=114.04 Aligned_cols=129 Identities=7% Similarity=-0.005 Sum_probs=97.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC--CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG--LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+++.+ ..+++++|+++ ++..++.+...+.. .++.+...|+.... ...++||
T Consensus 37 ~~~--~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~---~~~~~fD 108 (219)
T 3dh0_A 37 EGM--TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL---KNVEVLKSEENKIP---LPDNTVD 108 (219)
T ss_dssp TTC--EEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECBTTBCS---SCSSCEE
T ss_pred CCC--EEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEecccccCC---CCCCCee
Confidence 556 99999999999999888774 23999999998 46677776665542 24778887765433 2346799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh----------hHHHHHHHHHhc-CceEEEec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP----------EAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~----------~~~~~~~~~~~~-~f~~~~~~ 201 (232)
+|+++.++++..+...+++.+.++|+|||.+++....... ...+.+.+.+.+ +|++....
T Consensus 109 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 109 FIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp EEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 9999999998889999999999999999999998643221 124566666664 89876654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.3e-14 Score=108.08 Aligned_cols=126 Identities=17% Similarity=0.267 Sum_probs=92.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..++..+. +++++|+++. +..++.+.. .+.+...|+.... ...++||+|
T Consensus 46 ~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~--------~~~~~~~d~~~~~---~~~~~~D~i 111 (195)
T 3cgg_A 46 RGA--KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP--------EARWVVGDLSVDQ---ISETDFDLI 111 (195)
T ss_dssp TTC--EEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT--------TSEEEECCTTTSC---CCCCCEEEE
T ss_pred CCC--eEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC--------CCcEEEcccccCC---CCCCceeEE
Confidence 556 999999999999999998877 9999999984 444444321 2466676665432 124679999
Q ss_pred EEc-ccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecCCC
Q 026858 144 IAA-DVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHED 204 (232)
Q Consensus 144 i~~-~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~ 204 (232)
+++ +++++. .....+++.+.++|+|||.+++............+.+.+.. +|.+.......
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 176 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESW 176 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESST
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeeccc
Confidence 998 555443 56688999999999999999998765543345667776664 89988876553
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=115.06 Aligned_cols=105 Identities=15% Similarity=0.195 Sum_probs=85.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..++..+. +++++|+++ ++..++++...+.. .++.+...|+.... ..+++||+|
T Consensus 21 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~---~~~~~fD~v 91 (239)
T 1xxl_A 21 AEH--RVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESLP---FPDDSFDII 91 (239)
T ss_dssp TTC--EEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBCC---SCTTCEEEE
T ss_pred CCC--EEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCC---CCeEEEecccccCC---CCCCcEEEE
Confidence 557 999999999999999998876 999999998 46666666655441 24677777765432 234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++++..+...+++.+.++|+|||.+++....
T Consensus 92 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 92 TCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999988889999999999999999999997653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=117.83 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=102.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..++.+|.. +..+|+++|+++ ++..++.|+..++ +. ++.+...++.+........++||+
T Consensus 80 ~~~--~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--l~-~v~~~~~d~~~~~~~~~~~~~fD~ 154 (249)
T 3g89_A 80 GPL--RVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLG--LK-GARALWGRAEVLAREAGHREAYAR 154 (249)
T ss_dssp SSC--EEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT--CS-SEEEEECCHHHHTTSTTTTTCEEE
T ss_pred CCC--EEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC--CC-ceEEEECcHHHhhcccccCCCceE
Confidence 456 9999999999999999876 344999999998 5778888887765 22 377777766433211112368999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
|++..+ ..+..+++.+.++|+|||++++..-.........+.+.+.. +|.+..+.....+. ..+..++..+++
T Consensus 155 I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~--~~~~R~l~~~~k 228 (249)
T 3g89_A 155 AVARAV----APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPL--SGEARHLVVLEK 228 (249)
T ss_dssp EEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTT--TCCEEEEEEEEE
T ss_pred EEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCC--CCCcEEEEEEEe
Confidence 998643 46788999999999999998876533333333444444443 78777665443322 245567777776
Q ss_pred cCc
Q 026858 222 KKK 224 (232)
Q Consensus 222 ~~~ 224 (232)
.+.
T Consensus 229 ~~~ 231 (249)
T 3g89_A 229 TAP 231 (249)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=113.20 Aligned_cols=125 Identities=14% Similarity=0.126 Sum_probs=94.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++..++ +++++|+++. +..++.+. ....+.+...|+.... ...++||+|
T Consensus 53 ~~~--~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~d~~~~~---~~~~~fD~v 120 (242)
T 3l8d_A 53 KEA--EVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG------EGPDLSFIKGDLSSLP---FENEQFEAI 120 (242)
T ss_dssp TTC--EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT------CBTTEEEEECBTTBCS---SCTTCEEEE
T ss_pred CCC--eEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc------ccCCceEEEcchhcCC---CCCCCccEE
Confidence 566 999999999999999999887 9999999984 44444321 1245678887776443 235689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh-------------------hHHHHHHHHHh-cCceEEEec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP-------------------EAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~-------------------~~~~~~~~~~~-~~f~~~~~~ 201 (232)
++..++++..+...+++.+.++|+|||.+++....... .....+.+.+. .||++....
T Consensus 121 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 121 MAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp EEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 99999999999999999999999999999998743321 11245566665 489876654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-14 Score=116.46 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=95.6
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNK 113 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~ 113 (232)
....+.+.+.+... ..++. +|||||||+|..+..+++. +. +++++|+|+ ++..++++....+
T Consensus 45 ~~~~~~~~l~~~~~-------------~~~~~--~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~ 108 (273)
T 3bus_A 45 ATDRLTDEMIALLD-------------VRSGD--RVLDVGCGIGKPAVRLATARDV-RVTGISISRPQVNQANARATAAG 108 (273)
T ss_dssp HHHHHHHHHHHHSC-------------CCTTC--EEEEESCTTSHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcC-------------CCCCC--EEEEeCCCCCHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcC
Confidence 34456666666655 45667 9999999999999999875 65 999999998 4666666665544
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+..++.+...|+.... ..+++||+|++..++++..+...+++.+.++|+|||++++....
T Consensus 109 --~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 109 --LANRVTFSYADAMDLP---FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp --CTTTEEEEECCTTSCC---SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred --CCcceEEEECccccCC---CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 3446788888775532 23468999999999999889999999999999999999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-15 Score=121.83 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=94.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC--------------------------
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL-------------------------- 116 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-------------------------- 116 (232)
.++. +|||||||+|..+..++..++.+|+++|+|+ ++..+++++..+...+
T Consensus 54 ~~g~--~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGD--TLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEE--EEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCc--eEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3667 9999999999988877777876899999999 5666666554332110
Q ss_pred CCceE-EEEeecCCCcccc-cCCCCccEEEEcccCCC----cccHHHHHHHHHHhhCCCcEEEEEEeecC----------
Q 026858 117 NKSLK-TSVLYWNNQDQIN-ALKPPFDLVIAADVVYI----EESAAQLVRAMEALVADDGVVLLGYQLRS---------- 180 (232)
Q Consensus 117 ~~~i~-~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~pgG~l~i~~~~r~---------- 180 (232)
...+. +...|+.....+. ...++||+|+++.++++ ..+...++++++++|||||.++++.....
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 01132 6666666543221 12458999999998864 25667899999999999999999853211
Q ss_pred ---hhHHHHHHHHHh-cCceEEEecC
Q 026858 181 ---PEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 181 ---~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
....+.+.+.+. .||.+.....
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEEEEee
Confidence 113556667666 4898776643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-14 Score=113.88 Aligned_cols=100 Identities=12% Similarity=0.184 Sum_probs=79.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +++++|+++ ++..++++...... ++.+...|+.... ..++||+|
T Consensus 37 ~~~--~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~----~~~~fD~v 105 (246)
T 1y8c_A 37 VFD--DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL----KPRLACQDISNLN----INRKFDLI 105 (246)
T ss_dssp CTT--EEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC----CCEEECCCGGGCC----CSCCEEEE
T ss_pred CCC--eEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC----CeEEEecccccCC----ccCCceEE
Confidence 556 999999999999999998887 899999998 46666666554431 3566666654432 12679999
Q ss_pred EEcc-cCCCc---ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAAD-VVYIE---ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~-~~~~~---~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++.. ++++. .+...+++.+.++|+|||.+++.
T Consensus 106 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9987 88765 67889999999999999999984
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=110.07 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=78.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..++..+. +++++|+++. +..++++.. .++.+...|+.... .. ++||+|
T Consensus 45 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~---~~-~~fD~v 110 (220)
T 3hnr_A 45 SFG--NVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFE---VP-TSIDTI 110 (220)
T ss_dssp CCS--EEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCC---CC-SCCSEE
T ss_pred CCC--eEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcC---CC-CCeEEE
Confidence 456 999999999999999998887 9999999984 444444322 23466666655433 12 789999
Q ss_pred EEcccCCCcccHHH--HHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIEESAAQ--LVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~~~~~~--~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++++..+... +++.+.++|+|||.+++....
T Consensus 111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 99999987777766 999999999999999998754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=109.92 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=80.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +|||||||+|..+..+++.+ ..+++++|+|+ ++..++++...+... ...++.+...|+.... ...+
T Consensus 27 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 101 (219)
T 3jwg_A 27 SVNAK--KVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD---KRFS 101 (219)
T ss_dssp HTTCC--EEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC---GGGT
T ss_pred hcCCC--EEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc---cccC
Confidence 34567 99999999999999998874 24999999998 466666665544310 0115778887763322 2346
Q ss_pred CccEEEEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEE--SAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+||+|++..++++.. ....+++.+.++|+|||.++...
T Consensus 102 ~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 102 GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp TCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 899999999998766 44799999999999999666543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-14 Score=118.26 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=87.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..+++. ++ +|+++|+++ ++..++++...++ +..++.+...|+.... ...++||+
T Consensus 117 ~~~--~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~---~~~~~fD~ 188 (312)
T 3vc1_A 117 PDD--TLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLDTP---FDKGAVTA 188 (312)
T ss_dssp TTC--EEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCC---CCTTCEEE
T ss_pred CCC--EEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhcCC---CCCCCEeE
Confidence 566 9999999999999999887 77 999999998 5677777777665 4456788888876533 23468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|++..++++. +...+++.+.++|+|||++++.....
T Consensus 189 V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 189 SWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp EEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccc
Confidence 9999999877 49999999999999999999986543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-13 Score=112.59 Aligned_cols=133 Identities=10% Similarity=-0.024 Sum_probs=91.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHh----------cCC----CCCCceEEEEeecCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKR----------NKP----VLNKSLKTSVLYWNN 129 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~----------~~~----~~~~~i~~~~~d~~~ 129 (232)
++. +|||+|||+|..+..+|+.|+ +|+++|+|+. +..+++.... +.. ....++.+...|+..
T Consensus 68 ~~~--~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGL--RVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSC--EEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCC--eEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 556 999999999999999999998 9999999994 4444332211 000 012457888877655
Q ss_pred CcccccCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeecC---------hhHHHHHHHHHhcCceEE
Q 026858 130 QDQINALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLRS---------PEAHKLFWEMCAEVFLIE 198 (232)
Q Consensus 130 ~~~~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~---------~~~~~~~~~~~~~~f~~~ 198 (232)
... ...++||+|++..+++ .......+++.+.++|+|||+++++..... ....+.+.+.+...|++.
T Consensus 145 l~~--~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~~f~v~ 222 (252)
T 2gb4_A 145 LPR--ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKCSMQ 222 (252)
T ss_dssp GGG--GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTTTEEEE
T ss_pred CCc--ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhCCeEEE
Confidence 432 1126899999887775 345678899999999999999975432210 123466777777678876
Q ss_pred EecC
Q 026858 199 KVPH 202 (232)
Q Consensus 199 ~~~~ 202 (232)
....
T Consensus 223 ~~~~ 226 (252)
T 2gb4_A 223 CLEE 226 (252)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.4e-13 Score=106.49 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=90.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||+|||+|..+..+++.+ ..+++++|+++ ++..++++...++ . .++.+...|+..... ..+.|
T Consensus 38 ~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~---~~~~~ 109 (204)
T 3e05_A 38 LQDDL--VMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV--A-RNVTLVEAFAPEGLD---DLPDP 109 (204)
T ss_dssp CCTTC--EEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT--C-TTEEEEECCTTTTCT---TSCCC
T ss_pred CCCCC--EEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--C-CcEEEEeCChhhhhh---cCCCC
Confidence 44667 99999999999999999885 34999999998 5777778777665 2 457777777644321 12579
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
|+|++..+.+ ....+++.+.++|+|||++++...... ....+.+.+. .+|.
T Consensus 110 D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 110 DRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGYM 161 (204)
T ss_dssp SEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTCE
T ss_pred CEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCCc
Confidence 9999987665 778999999999999999999865442 3455556555 3664
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=109.78 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=81.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +|||||||+|..+..+++.+ ..+++++|+|+ ++..++++...+... ...++.+...|+.... ...+
T Consensus 27 ~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~---~~~~ 101 (217)
T 3jwh_A 27 QSNAR--RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD---KRFH 101 (217)
T ss_dssp HTTCC--EEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC---GGGC
T ss_pred hcCCC--EEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc---ccCC
Confidence 34567 99999999999999998864 34999999998 466666666544311 0125788887764332 2236
Q ss_pred CccEEEEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEE--SAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+||+|++..++++.. ....+++.+.++|+|||.+++..
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 102 GYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred CcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 899999999998665 45899999999999999776654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-14 Score=114.49 Aligned_cols=131 Identities=11% Similarity=0.149 Sum_probs=94.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.+..+++++|+++ ++..++++...+. ..++.+...|+.... ...++||+|
T Consensus 79 ~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~~---~~~~~fD~v 150 (241)
T 2ex4_A 79 GTS--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQDFT---PEPDSYDVI 150 (241)
T ss_dssp CCS--EEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGGCC---CCSSCEEEE
T ss_pred CCC--EEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcChhhcC---CCCCCEEEE
Confidence 456 9999999999999998877555999999998 4556665554432 123566666654332 224579999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeecC------------hhHHHHHHHHHhc-CceEEEecCC
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLRS------------PEAHKLFWEMCAE-VFLIEKVPHE 203 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~------------~~~~~~~~~~~~~-~f~~~~~~~~ 203 (232)
++..++++..+ ...+++.+.++|+|||++++.+.... ......+.+.+.+ ||.+......
T Consensus 151 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 99998876655 56899999999999999999764321 0135566776664 8988777544
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=107.93 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=91.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|.+++.+++.+. +|+++|+++ ++..++++...++ +..++.+...|...... ..+.||
T Consensus 53 ~~~~~--~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~---~~~~~D 124 (204)
T 3njr_A 53 PRRGE--LLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPAALA---DLPLPE 124 (204)
T ss_dssp CCTTC--EEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTGGGT---TSCCCS
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhhhcc---cCCCCC
Confidence 34567 999999999999999998865 999999998 5777788877765 33357777777654221 234799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
+|++...+ ... +++.+.++|+|||++++..... .....+.+.+.+ ++++..+.
T Consensus 125 ~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 125 AVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp EEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEEEE
T ss_pred EEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEEEE
Confidence 99987633 455 9999999999999999887543 334555555554 67766654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=115.47 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=99.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..++.++.. ...+|+++|+|+ ++..++++...++ +. ++.+...|+.+........++||+
T Consensus 70 ~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 70 QVN--TICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ--LE-NTTFCHDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GCC--EEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT--CS-SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCC--EEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CEEEEeccHHHhcccccccCCccE
Confidence 556 9999999999999999864 333999999998 5677777777665 22 367777765432210112468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
|++... .+...+++.+.++|+|||.+++............+.+.+.. +|.+........+. ......++.+++
T Consensus 145 V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~l~~~~k 218 (240)
T 1xdz_A 145 VTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPI--EESDRNIMVIRK 218 (240)
T ss_dssp EEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTT--TCCEEEEEEEEE
T ss_pred EEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCC--CCCceEEEEEEe
Confidence 998652 56889999999999999999987544443334445555553 78776654332221 234456666666
Q ss_pred cCc
Q 026858 222 KKK 224 (232)
Q Consensus 222 ~~~ 224 (232)
.+.
T Consensus 219 ~~~ 221 (240)
T 1xdz_A 219 IKN 221 (240)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-15 Score=120.35 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=78.6
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccc-cCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhc
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLD-FHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
.+..+.+++.+... . .++. +|||+|||+|..+..+++.. ..+++++|+++ ++..++++...+
T Consensus 13 ~~~~~~~~~~~~l~-------------~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~ 77 (215)
T 4dzr_A 13 DTEVLVEEAIRFLK-------------RMPSGT--RVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF 77 (215)
T ss_dssp HHHHHHHHHHHHHT-------------TCCTTE--EEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------
T ss_pred cHHHHHHHHHHHhh-------------hcCCCC--EEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 35556666665543 2 3566 99999999999999999873 23999999998 466666666554
Q ss_pred CCCCCCceEEEEeecCCCccc-ccCCCCccEEEEcccCCCcccH--------------------------HHHHHHHHHh
Q 026858 113 KPVLNKSLKTSVLYWNNQDQI-NALKPPFDLVIAADVVYIEESA--------------------------AQLVRAMEAL 165 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~-~~~~~~fD~Ii~~~~~~~~~~~--------------------------~~~l~~l~~~ 165 (232)
.. ++.+...|+...... ....++||+|+++.+++..... ..+++.+.++
T Consensus 78 ~~----~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (215)
T 4dzr_A 78 GA----VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYV 153 (215)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGG
T ss_pred CC----ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHH
Confidence 31 344444444331110 0012689999998776543322 6788889999
Q ss_pred hCCCcEEEEEEeecChhHHHHHHHHHh---cCceEE
Q 026858 166 VADDGVVLLGYQLRSPEAHKLFWEMCA---EVFLIE 198 (232)
Q Consensus 166 l~pgG~l~i~~~~r~~~~~~~~~~~~~---~~f~~~ 198 (232)
|+|||++++...... ....+.+.+. .+|...
T Consensus 154 LkpgG~l~~~~~~~~--~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 154 LARGRAGVFLEVGHN--QADEVARLFAPWRERGFRV 187 (215)
T ss_dssp BCSSSEEEEEECTTS--CHHHHHHHTGGGGGGTEEC
T ss_pred hcCCCeEEEEEECCc--cHHHHHHHHHHhhcCCceE
Confidence 999999444433222 1334444444 467543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-14 Score=114.95 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=94.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+|..+..++..+..+++++|+++. +..++++.... ..+.+...|+.... ...++||+
T Consensus 92 ~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~---~~~~~fD~ 161 (254)
T 1xtp_A 92 HGTS--RALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETAT---LPPNTYDL 161 (254)
T ss_dssp CCCS--EEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCC---CCSSCEEE
T ss_pred cCCC--EEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCC---CCCCCeEE
Confidence 3556 99999999999999888776558999999984 55555543321 34677777665432 23468999
Q ss_pred EEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeecC-------------hhHHHHHHHHHhc-CceEEEecCC
Q 026858 143 VIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLRS-------------PEAHKLFWEMCAE-VFLIEKVPHE 203 (232)
Q Consensus 143 Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r~-------------~~~~~~~~~~~~~-~f~~~~~~~~ 203 (232)
|++..++++. .+...+++.+.++|+|||.+++...... ....+.+.+.+.+ ||.+..+...
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 238 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQ 238 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEEC
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeec
Confidence 9999999876 5689999999999999999999874211 0123566666664 8987776543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=112.76 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=91.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~ 142 (232)
++. +|||||||+|..+..+++.+. +++++|+++. +..++++ . .+.+...++......... ..+||+
T Consensus 52 ~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~------~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 52 QPE--RVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA---G------AGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp CCS--EEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT---C------SSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred CCC--EEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh---c------ccccchhhHHhhcccccccCCCccE
Confidence 446 999999999999999998887 9999999984 4444443 1 124444444332111112 235999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC-----------------------------hhHHHHHHHHHhc
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS-----------------------------PEAHKLFWEMCAE 193 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-----------------------------~~~~~~~~~~~~~ 193 (232)
|+++.+++ ..+...+++.+.++|+|||.+++...... ....+.+.+.+.+
T Consensus 120 v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (227)
T 3e8s_A 120 ICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDM 198 (227)
T ss_dssp EEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHH
T ss_pred EEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHH
Confidence 99999998 78889999999999999999999764221 0135667777764
Q ss_pred -CceEEEecCCC
Q 026858 194 -VFLIEKVPHED 204 (232)
Q Consensus 194 -~f~~~~~~~~~ 204 (232)
||.+..+....
T Consensus 199 aGf~~~~~~~~~ 210 (227)
T 3e8s_A 199 AGLRLVSLQEPQ 210 (227)
T ss_dssp TTEEEEEEECCC
T ss_pred cCCeEEEEecCC
Confidence 99998887643
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.9e-14 Score=109.15 Aligned_cols=128 Identities=16% Similarity=0.214 Sum_probs=94.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..++..+. +++++|+++ ++..++++...+.. ..+.+...|+.... . .++||+|
T Consensus 32 ~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~---~-~~~~D~v 101 (199)
T 2xvm_A 32 KPG--KTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENL---DNLHTRVVDLNNLT---F-DRQYDFI 101 (199)
T ss_dssp CSC--EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTC---TTEEEEECCGGGCC---C-CCCEEEE
T ss_pred CCC--eEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCC---CCcEEEEcchhhCC---C-CCCceEE
Confidence 556 999999999999999998887 999999998 46677766655542 23677777765433 2 5689999
Q ss_pred EEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeecC-----------hhHHHHHHHHHhcCceEEEecCC
Q 026858 144 IAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQLRS-----------PEAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 144 i~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~-----------~~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
++..++++.. +...+++.+.++|+|||.+++...... ....+.+.+.+.. |++......
T Consensus 102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-f~~~~~~~~ 173 (199)
T 2xvm_A 102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG-WERVKYNED 173 (199)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT-SEEEEEECC
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC-CeEEEeccc
Confidence 9999887554 889999999999999999887653211 1123455666655 887776543
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=117.75 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=84.8
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCC
Q 026858 38 LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLN 117 (232)
Q Consensus 38 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~ 117 (232)
..|.+++..... ... +|||||||+|..+..++..+. +|+++|+|+.|...+ . -.
T Consensus 27 ~~l~~~l~~~~~---------------~~~--~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a---~-----~~ 80 (257)
T 4hg2_A 27 RALFRWLGEVAP---------------ARG--DALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQA---L-----RH 80 (257)
T ss_dssp HHHHHHHHHHSS---------------CSS--EEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTC---C-----CC
T ss_pred HHHHHHHHHhcC---------------CCC--CEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhh---h-----hc
Confidence 346677776654 345 899999999999999999887 999999998432111 1 12
Q ss_pred CceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 118 KSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 118 ~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.++.+...+..+.. ..+++||+|+++.++++. +.+.+++++.++|||||.+++.....
T Consensus 81 ~~v~~~~~~~e~~~---~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 81 PRVTYAVAPAEDTG---LPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp TTEEEEECCTTCCC---CCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCceeehhhhhhhc---ccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 34677777665432 345789999999999765 57889999999999999998876544
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=115.23 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=81.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++..+. +++++|+|+. +..++++... ++.+...|..... .+++||+|
T Consensus 42 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-------~v~~~~~d~~~~~----~~~~fD~v 107 (250)
T 2p7i_A 42 RPG--NLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-------GITYIHSRFEDAQ----LPRRYDNI 107 (250)
T ss_dssp CSS--CEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-------CEEEEESCGGGCC----CSSCEEEE
T ss_pred CCC--cEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-------CeEEEEccHHHcC----cCCcccEE
Confidence 556 899999999999999998887 8999999984 4444443211 4677777665431 35689999
Q ss_pred EEcccCCCcccHHHHHHHHH-HhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAME-ALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~-~~l~pgG~l~i~~~~r 179 (232)
++..++++..+...+++.+. ++|+|||.+++..+..
T Consensus 108 ~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 108 VLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred EEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 99999998889999999999 9999999999987654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-14 Score=107.55 Aligned_cols=119 Identities=15% Similarity=0.176 Sum_probs=91.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +++++|+++. +..++++ . .++.+...| .+...++||+|
T Consensus 17 ~~~--~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~----~~v~~~~~d------~~~~~~~~D~v 79 (170)
T 3i9f_A 17 KKG--VIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK----F----DSVITLSDP------KEIPDNSVDFI 79 (170)
T ss_dssp CCE--EEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH----C----TTSEEESSG------GGSCTTCEEEE
T ss_pred CCC--eEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh----C----CCcEEEeCC------CCCCCCceEEE
Confidence 556 999999999999999998876 9999999984 4444443 1 234666555 22234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh----------hHHHHHHHHHhcCceEEEec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP----------EAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~----------~~~~~~~~~~~~~f~~~~~~ 201 (232)
+++.++++..+...+++.+.++|+|||++++....... ...+.+.+.+. +|++....
T Consensus 80 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~ 146 (170)
T 3i9f_A 80 LFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRF 146 (170)
T ss_dssp EEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEE
T ss_pred EEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEcc
Confidence 99999998889999999999999999999998654321 12456777777 99887765
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=110.08 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=79.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+|..+..+++.+..+++++|+++. +..++++... .++.+...|+.... ...++||+
T Consensus 42 ~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~---~~~~~fD~ 110 (243)
T 3bkw_A 42 VGGL--RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLH---LPQDSFDL 110 (243)
T ss_dssp CTTC--EEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCC---CCTTCEEE
T ss_pred cCCC--EEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhcc---CCCCCceE
Confidence 3567 99999999999999998887668999999984 4444432211 24677777665432 23468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++..++++..+...+++.+.++|+|||.+++..
T Consensus 111 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 111 AYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 9999999888899999999999999999999975
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=113.03 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=92.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHh---cCCCCCCceEEEEeecCCCccc----cc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKR---NKPVLNKSLKTSVLYWNNQDQI----NA 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~---~~~~~~~~i~~~~~d~~~~~~~----~~ 135 (232)
++. +|||+|||+|.+++.+++.. ..+++++|+++ ++..+++|+.. +. +..++.+...|+...... ..
T Consensus 36 ~~~--~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 36 RAC--RIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAA--FSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp SCE--EEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTT--TGGGEEEEECCTTCCHHHHHHTTC
T ss_pred CCC--EEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCC--CcceEEEEeCCHHHHhhhhhhhcc
Confidence 456 99999999999999998873 34999999998 56777777766 44 344678888887665210 11
Q ss_pred CCCCccEEEEcccCCCc------------------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceE
Q 026858 136 LKPPFDLVIAADVVYIE------------------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLI 197 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~------------------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~ 197 (232)
..++||+|+++++++.. .....+++.+.++|+|||++++..... ....+.+.+.+.|..
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~l~~~~~~ 188 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ---SVAEIIAACGSRFGG 188 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG---GHHHHHHHHTTTEEE
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH---HHHHHHHHHHhcCCc
Confidence 24679999998776543 247889999999999999999976433 345567766655654
Q ss_pred EEe
Q 026858 198 EKV 200 (232)
Q Consensus 198 ~~~ 200 (232)
..+
T Consensus 189 ~~i 191 (260)
T 2ozv_A 189 LEI 191 (260)
T ss_dssp EEE
T ss_pred eEE
Confidence 444
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=113.21 Aligned_cols=119 Identities=16% Similarity=0.156 Sum_probs=90.0
Q ss_pred echHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc
Q 026858 34 WPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRN 112 (232)
Q Consensus 34 W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~ 112 (232)
|-....+..++..... ..++. +|||+|||+|..+..+++.+. +++++|+++. +..++++....
T Consensus 33 ~~~~~~~~~~l~~~~~-------------~~~~~--~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~ 96 (216)
T 3ofk_A 33 PFERERHTQLLRLSLS-------------SGAVS--NGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRW 96 (216)
T ss_dssp HHHHHHHHHHHHHHTT-------------TSSEE--EEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTC
T ss_pred HhHHHHHHHHHHHHcc-------------cCCCC--cEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccC
Confidence 3334455566665554 44566 999999999999999998886 9999999984 55555544332
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccH---HHHHHHHHHhhCCCcEEEEEEe
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESA---AQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~---~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.++.+...|+.... ..++||+|+++.++++..+. ..+++.+.++|+|||.+++...
T Consensus 97 -----~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 97 -----SHISWAATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp -----SSEEEEECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -----CCeEEEEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 25788888776554 25689999999999876655 5779999999999999999764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-14 Score=115.37 Aligned_cols=137 Identities=13% Similarity=0.194 Sum_probs=95.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC--------------------------
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL-------------------------- 116 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-------------------------- 116 (232)
.++. +|||||||+|..+..++..+..+|+++|+|+ ++..++++...+....
T Consensus 55 ~~~~--~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGE--LLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEE--EEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCC--EEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3556 9999999999999988887656899999998 4556655543321000
Q ss_pred CCce-EEEEeecCCCcccc-cCCCCccEEEEcccCC----CcccHHHHHHHHHHhhCCCcEEEEEEeec-----------
Q 026858 117 NKSL-KTSVLYWNNQDQIN-ALKPPFDLVIAADVVY----IEESAAQLVRAMEALVADDGVVLLGYQLR----------- 179 (232)
Q Consensus 117 ~~~i-~~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~pgG~l~i~~~~r----------- 179 (232)
..++ .+...|+....... ...++||+|+++.+++ +..+...+++.+.++|+|||.+++.....
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 212 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF 212 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence 0125 77777776644211 1126799999999988 66688999999999999999999975221
Q ss_pred --ChhHHHHHHHHHh-cCceEEEecC
Q 026858 180 --SPEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 180 --~~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
.....+.+.+.+. .||.+.....
T Consensus 213 ~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 213 SSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp ECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred cccccCHHHHHHHHHHCCCEEEEEEE
Confidence 1123456666666 4898776653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=113.43 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=80.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc--cccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--INALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~ 139 (232)
..++. +|||||||+|.+++.+++.++ +|+++|+|+ ++..++++...+ ....++..... .....++
T Consensus 43 l~~g~--~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 43 IVPGS--TVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp CCTTC--EEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTSCCCGGGTTC
T ss_pred CCCcC--EEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc---------cceeeeeecccccccccCCC
Confidence 44667 999999999999999999887 999999999 455555554332 12233332221 1122468
Q ss_pred ccEEEEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHH
Q 026858 140 FDLVIAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWE 189 (232)
Q Consensus 140 fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~ 189 (232)
||+|+++.++++ .+....+++.+.++| |||+++++.....+......+.
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~ 161 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIE 161 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHH
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHH
Confidence 999999988863 456788999999999 9999999876544333333333
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-13 Score=112.94 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=92.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.++.+|+++|+|+ ++..+++|+..|+ +..++.+...|...... .++||+|
T Consensus 125 ~~~--~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~--~~~~v~~~~~D~~~~~~----~~~fD~V 196 (278)
T 2frn_A 125 PDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFPG----ENIADRI 196 (278)
T ss_dssp TTC--EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCCC----CSCEEEE
T ss_pred CCC--EEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECCHHHhcc----cCCccEE
Confidence 567 9999999999999999998775799999998 5788889988886 44457788777655442 4689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC----hhHHHHHHHHHh-cCceEEE
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWEMCA-EVFLIEK 199 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~----~~~~~~~~~~~~-~~f~~~~ 199 (232)
++..+. ....++..+.++|+|||.+++...... ....+.+.+.+. .+|.+..
T Consensus 197 i~~~p~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 197 LMGYVV----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp EECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred EECCch----hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 986542 335678889999999999999776531 123445555555 3777766
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=103.88 Aligned_cols=125 Identities=10% Similarity=0.081 Sum_probs=87.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||+|||+|..+..+++. +..+++++|+++ ++..++++...++ ...++ +...+... ..+...++|
T Consensus 23 ~~~~~--~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~-~~~~d~~~--~~~~~~~~~ 95 (178)
T 3hm2_A 23 PKPHE--TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG--VSDRI-AVQQGAPR--AFDDVPDNP 95 (178)
T ss_dssp CCTTE--EEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-EEECCTTG--GGGGCCSCC
T ss_pred ccCCC--eEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-EEecchHh--hhhccCCCC
Confidence 34667 9999999999999999887 334999999998 5677777776654 33345 55554432 222223689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~ 200 (232)
|+|+++.++++ ..+++.+.++|+|||++++...... ....+.+.+.. ++.+..+
T Consensus 96 D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 96 DVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE--SEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp SEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH--HHHHHHHHHHHHCCEEEEE
T ss_pred CEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc--cHHHHHHHHHHcCCeeEEE
Confidence 99999888776 6789999999999999998775442 23444554443 5555444
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=106.59 Aligned_cols=125 Identities=12% Similarity=0.051 Sum_probs=92.7
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++.+. +++++|+++ ++..++++...+.. ++.+...|+.... ...++||+|+++..
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~---~~~~~fD~v~~~~~ 103 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV----KITTVQSNLADFD---IVADAWEGIVSIFC 103 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC----CEEEECCBTTTBS---CCTTTCSEEEEECC
T ss_pred CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC----ceEEEEcChhhcC---CCcCCccEEEEEhh
Confidence 899999999999999998887 999999998 46666666655432 3567776665432 23468999999755
Q ss_pred CCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh--------------hHHHHHHHHHhcCceEEEecCC
Q 026858 149 VYIEESAAQLVRAMEALVADDGVVLLGYQLRSP--------------EAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 149 ~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~--------------~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
.....+...+++.+.++|+|||.+++....... ...+.+.+.+. +|++..+...
T Consensus 104 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~~~ 171 (202)
T 2kw5_A 104 HLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIANNL 171 (202)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEEEE
Confidence 444567899999999999999999998653321 23456666666 8987766543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=109.98 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=83.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +++++|+++ ++..++++...+. .++.+...|+.... ...++||+|
T Consensus 38 ~~~--~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~---~~~~~~D~v 107 (227)
T 1ve3_A 38 KRG--KVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE----SNVEFIVGDARKLS---FEDKTFDYV 107 (227)
T ss_dssp SCC--EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCTTSCC---SCTTCEEEE
T ss_pred CCC--eEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC----CCceEEECchhcCC---CCCCcEEEE
Confidence 456 999999999999999998887 999999998 4667777666553 34577777765532 224689999
Q ss_pred EEccc--CCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADV--VYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~--~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+++++ +++..+...+++.+.++|+|||.+++....
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 108 IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 99998 666678889999999999999999998754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-13 Score=114.44 Aligned_cols=107 Identities=12% Similarity=0.159 Sum_probs=85.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..+++. ++ +|+++|+|+ ++..++++....+ +..++.+...|+... +++|
T Consensus 88 ~~~~~--~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~------~~~f 156 (318)
T 2fk8_A 88 LKPGM--TLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWEDF------AEPV 156 (318)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGGC------CCCC
T ss_pred CCCcC--EEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHHC------CCCc
Confidence 44667 9999999999999999877 87 999999998 4666666665543 334567777665332 3689
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|+|++..++++. .+...+++.+.++|+|||++++......
T Consensus 157 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 157 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred CEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 999999999765 6889999999999999999999876554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=115.21 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=79.8
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc-c
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA-D 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~-~ 147 (232)
+|||||||+|..+..++..+. +|+++|+|+ ++..++++.......+..++.+...|+.... ..++||+|+++ .
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA----LDKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC----CSCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC----cCCCcCEEEECCc
Confidence 899999999999999998887 999999998 4666666665433111145788888876543 25689999975 4
Q ss_pred cCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 148 VVYIEE--SAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 148 ~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
++++.. +...+++.+.++|+|||++++.....
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 160 SINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp HHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 444433 57899999999999999999975433
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=108.46 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=76.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++. . +++++|+++ ++..++++...+. .++.+...|+.... ..++||+|
T Consensus 33 ~~~--~vLdiG~G~G~~~~~l~~~-~-~v~~vD~s~~~~~~a~~~~~~~~----~~~~~~~~d~~~~~----~~~~fD~v 100 (243)
T 3d2l_A 33 PGK--RIADIGCGTGTATLLLADH-Y-EVTGVDLSEEMLEIAQEKAMETN----RHVDFWVQDMRELE----LPEPVDAI 100 (243)
T ss_dssp TTC--EEEEESCTTCHHHHHHTTT-S-EEEEEESCHHHHHHHHHHHHHTT----CCCEEEECCGGGCC----CSSCEEEE
T ss_pred CCC--eEEEecCCCCHHHHHHhhC-C-eEEEEECCHHHHHHHHHhhhhcC----CceEEEEcChhhcC----CCCCcCEE
Confidence 456 9999999999999999887 5 999999998 4666666665443 23577777665432 23679999
Q ss_pred EEcc-cCCCc---ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAAD-VVYIE---ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~-~~~~~---~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++.. ++++. .+...+++.+.++|+|||.+++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 101 TILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9875 66544 67788999999999999999873
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.4e-13 Score=106.61 Aligned_cols=155 Identities=20% Similarity=0.148 Sum_probs=103.9
Q ss_pred CccceeechHH-HHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHH
Q 026858 28 HVGTSVWPCSL-VLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMP 103 (232)
Q Consensus 28 ~~g~~~W~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~ 103 (232)
+...|.|+--. -|+..+..-.. .+...+|. +|||+|||+|..+..+|+. ..++|+++|+++ ++.
T Consensus 49 ~~e~r~w~p~rsklaa~i~~gl~----------~l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~ 116 (233)
T 4df3_A 49 GEEYREWNAYRSKLAAALLKGLI----------ELPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMR 116 (233)
T ss_dssp TEEEEECCTTTCHHHHHHHTTCS----------CCCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHH
T ss_pred CceeeeECCCchHHHHHHHhchh----------hcCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHH
Confidence 34678888543 25555544332 12256888 9999999999999999986 345999999998 455
Q ss_pred HHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChh-
Q 026858 104 ALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE- 182 (232)
Q Consensus 104 ~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~- 182 (232)
.+.+++... .++.....+...........+.+|+|++ + +.++.+...++.++.+.|||||+++++...+...
T Consensus 117 ~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d-~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~ 189 (233)
T 4df3_A 117 DLLTVVRDR-----RNIFPILGDARFPEKYRHLVEGVDGLYA-D-VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDV 189 (233)
T ss_dssp HHHHHSTTC-----TTEEEEESCTTCGGGGTTTCCCEEEEEE-C-CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHH
T ss_pred HHHHhhHhh-----cCeeEEEEeccCccccccccceEEEEEE-e-ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCC
Confidence 555443321 3467777777666554455678999986 3 3444677889999999999999999987555421
Q ss_pred ------HHHHHHHHH-hcCceEEEec
Q 026858 183 ------AHKLFWEMC-AEVFLIEKVP 201 (232)
Q Consensus 183 ------~~~~~~~~~-~~~f~~~~~~ 201 (232)
....-.+.+ +.+|++.+..
T Consensus 190 ~~p~~~~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 190 TTEPSEVYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp HTCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCChHHHHHHHHHHHHHCCCEEEEEE
Confidence 122223334 4589876553
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=103.21 Aligned_cols=136 Identities=9% Similarity=0.008 Sum_probs=99.6
Q ss_pred echHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 34 WPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 34 W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
.+....+.+++..... ..++. +|||+|||+|..+..+++.+ .+++++|+++ ++..++++...+
T Consensus 17 ~~~~~~~~~~~~~~~~-------------~~~~~--~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~ 80 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLN-------------LNKDD--VVVDVGCGSGGMTVEIAKRC-KFVYAIDYLDGAIEVTKQNLAKF 80 (183)
T ss_dssp CCCCHHHHHHHHHHHC-------------CCTTC--EEEEESCCCSHHHHHHHTTS-SEEEEEECSHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHcC-------------CCCCC--EEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHc
Confidence 3455566666666555 44667 99999999999999999844 4999999998 577777777766
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
+. .++.+...|+.... ..++||+|+++.+ .....+++.+.++ |||.+++..... .....+.+.+.
T Consensus 81 ~~---~~~~~~~~d~~~~~----~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~ 145 (183)
T 2yxd_A 81 NI---KNCQIIKGRAEDVL----DKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFE 145 (183)
T ss_dssp TC---CSEEEEESCHHHHG----GGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHH
T ss_pred CC---CcEEEEECCccccc----cCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHH
Confidence 52 34677777765411 1258999999877 6788999999999 999999987443 33455666665
Q ss_pred c-CceEEEe
Q 026858 193 E-VFLIEKV 200 (232)
Q Consensus 193 ~-~f~~~~~ 200 (232)
+ +|.++.+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 4 6776655
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=112.55 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=75.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.+. +++++|+|+. +..++++.. ++.+...|+..... .++||+|
T Consensus 50 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~--------~~~~~~~d~~~~~~----~~~fD~v 114 (263)
T 3pfg_A 50 KAA--SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP--------DAVLHHGDMRDFSL----GRRFSAV 114 (263)
T ss_dssp TCC--EEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT--------TSEEEECCTTTCCC----SCCEEEE
T ss_pred CCC--cEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC--------CCEEEECChHHCCc----cCCcCEE
Confidence 446 999999999999999998887 9999999984 444444321 35777777665431 5689999
Q ss_pred EEcc-cCCCc---ccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAAD-VVYIE---ESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~-~~~~~---~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++.. ++++. .+...+++.+.++|+|||.+++.
T Consensus 115 ~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 115 TCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp EECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred EEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9987 77655 47778899999999999999984
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=115.25 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=97.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCC------------CC--------------
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPV------------LN-------------- 117 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~------------~~-------------- 117 (232)
++. +|||||||+|..+..++..+..+|+++|+|+. +..+++++...... ..
T Consensus 71 ~~~--~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGR--TLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCS--EEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCC--eEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 556 99999999999665555543349999999984 55555433221000 00
Q ss_pred -CceEEEEeecCCCcccc---cCCCCccEEEEcccCCC----cccHHHHHHHHHHhhCCCcEEEEEEeec----------
Q 026858 118 -KSLKTSVLYWNNQDQIN---ALKPPFDLVIAADVVYI----EESAAQLVRAMEALVADDGVVLLGYQLR---------- 179 (232)
Q Consensus 118 -~~i~~~~~d~~~~~~~~---~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~pgG~l~i~~~~r---------- 179 (232)
..+.+...|+.....+. ...++||+|+++.++++ ..+...+++.+.++|+|||++++.....
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~ 228 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 228 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence 01334445555422211 12356999999999876 5678999999999999999999964211
Q ss_pred ---ChhHHHHHHHHHhc-CceEEEecCCCCCCCCC----CCceEEEEEEecCcch
Q 026858 180 ---SPEAHKLFWEMCAE-VFLIEKVPHEDLHPDYG----YEETDVYILRKKKKEE 226 (232)
Q Consensus 180 ---~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 226 (232)
.....+.+.+.+.+ ||.+........+..|. +-+..+|+.+++...+
T Consensus 229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (289)
T 2g72_A 229 LTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGLE 283 (289)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC--
T ss_pred eeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccccccCcceEEEEEEeccccc
Confidence 11235566676664 89877665444322222 2223456666554433
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=112.65 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=85.6
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVL 116 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~ 116 (232)
...+.+.+.+... ..++. +|||||||+|..+..++..+. +|+++|+|+.+.... ..+
T Consensus 19 ~~~~~~~l~~~~~-------------~~~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a---~~~---- 75 (261)
T 3ege_A 19 DIRIVNAIINLLN-------------LPKGS--VIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQA---VVH---- 75 (261)
T ss_dssp CHHHHHHHHHHHC-------------CCTTC--EEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSS---CCC----
T ss_pred cHHHHHHHHHHhC-------------CCCCC--EEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHH---Hhc----
Confidence 3346666666554 34667 999999999999999998776 999999998322111 111
Q ss_pred CCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 117 ~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.++.+...|+.... ..+++||+|++..++++..+...+++.+.++|+ ||.+++....
T Consensus 76 -~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 76 -PQVEWFTGYAENLA---LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp -TTEEEECCCTTSCC---SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred -cCCEEEECchhhCC---CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 14677777765432 234689999999999988999999999999999 9988887644
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-13 Score=117.46 Aligned_cols=113 Identities=12% Similarity=0.199 Sum_probs=86.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhc-----CCCCCCceEEEEeecCCCccc--
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRN-----KPVLNKSLKTSVLYWNNQDQI-- 133 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~-----~~~~~~~i~~~~~d~~~~~~~-- 133 (232)
.++. +|||||||+|..+..+++. ...+|+++|+++ ++..+++++..+ +.....++.+...|+......
T Consensus 82 ~~~~--~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 82 LEGA--TVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp GTTC--EEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred CCCC--EEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 4667 9999999999999888875 234999999998 466666665543 101124578888887664221
Q ss_pred -ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 134 -NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 134 -~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+..+++||+|+++.++++..+...+++.+.++|+|||.+++.+..
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 233568999999999998889999999999999999999997643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-13 Score=102.96 Aligned_cols=146 Identities=12% Similarity=0.011 Sum_probs=97.0
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKP 114 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~ 114 (232)
+.+..|.+++.... .++. +|||+|||+|.++..+++.+ +++++|+|+.+...
T Consensus 8 ~~~~~l~~~l~~~~---------------~~~~--~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------- 59 (170)
T 3q87_B 8 EDTYTLMDALEREG---------------LEMK--IVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------- 59 (170)
T ss_dssp HHHHHHHHHHHHHT---------------CCSC--EEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------
T ss_pred ccHHHHHHHHHhhc---------------CCCC--eEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------
Confidence 45566777754421 2556 99999999999999999887 99999999943222
Q ss_pred CCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc---------HHHHHHHHHHhhCCCcEEEEEEeecChhHHH
Q 026858 115 VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES---------AAQLVRAMEALVADDGVVLLGYQLRSPEAHK 185 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~---------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~ 185 (232)
..++.+...|+.... ..++||+|+++.+++...+ ...++..+.+.+ |||.+++...... ...
T Consensus 60 --~~~~~~~~~d~~~~~----~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~--~~~ 130 (170)
T 3q87_B 60 --HRGGNLVRADLLCSI----NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN--RPK 130 (170)
T ss_dssp --CSSSCEEECSTTTTB----CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG--CHH
T ss_pred --ccCCeEEECChhhhc----ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC--CHH
Confidence 123467777765532 2367999999887764332 356777788877 9999999875443 245
Q ss_pred HHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 186 LFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 186 ~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
.+.+.+. .+|....+.... +..+.+..+..++
T Consensus 131 ~l~~~l~~~gf~~~~~~~~~----~~~e~~~~~~~~~ 163 (170)
T 3q87_B 131 EVLARLEERGYGTRILKVRK----ILGETVYIIKGEK 163 (170)
T ss_dssp HHHHHHHHTTCEEEEEEEEE----CSSSEEEEEEEEC
T ss_pred HHHHHHHHCCCcEEEEEeec----cCCceEEEEEEec
Confidence 5666665 489877765433 2344444444443
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=116.47 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=83.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||||||+|.+++.+++.++.+|+++|+++++..++++...++ +..++.+...|..... ...++||+
T Consensus 62 ~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~---~~~~~~D~ 134 (340)
T 2fyt_A 62 IFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNK--LEDTITLIKGKIEEVH---LPVEKVDV 134 (340)
T ss_dssp GTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTT--CTTTEEEEESCTTTSC---CSCSCEEE
T ss_pred hcCCC--EEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcC--CCCcEEEEEeeHHHhc---CCCCcEEE
Confidence 45677 99999999999999999987669999999987777777777765 4456788887766542 22368999
Q ss_pred EEEcc---cCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 143 VIAAD---VVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 143 Ii~~~---~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
|++.. .+.+...+..++..+.++|+|||.++
T Consensus 135 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 99876 34456778889999999999999987
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=118.62 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=85.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||||||+|.+++.+++.|+.+|+++|.|+++..+++++..++ +..++.+...|+.... ..++||+
T Consensus 61 ~~~~~--~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~D~ 132 (376)
T 3r0q_C 61 HFEGK--TVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANN--LDHIVEVIEGSVEDIS----LPEKVDV 132 (376)
T ss_dssp TTTTC--EEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTT--CTTTEEEEESCGGGCC----CSSCEEE
T ss_pred cCCCC--EEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcC--CCCeEEEEECchhhcC----cCCcceE
Confidence 56778 99999999999999999988779999999976778888887776 4456888888775543 1368999
Q ss_pred EEEcccCC---CcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 143 VIAADVVY---IEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~---~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|++....| ....+..++..+.++|+|||.+++.
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 99965444 3367889999999999999998774
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=109.59 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=79.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. +. +++++|+|+. +..++++.... .++.+...|+..... .++||
T Consensus 44 ~~~--~vLDiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~----~~~fD 111 (234)
T 3dtn_A 44 ENP--DILDLGAGTGLLSAFLMEKYPEA-TFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSKYDF----EEKYD 111 (234)
T ss_dssp SSC--EEEEETCTTSHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTTCCC----CSCEE
T ss_pred CCC--eEEEecCCCCHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhccCC----CCCce
Confidence 456 9999999999999999887 55 9999999984 45555443322 157788877765442 26899
Q ss_pred EEEEcccCCCcccHH--HHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAA--QLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~--~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|++..++++..+.. .+++.+.++|+|||.+++.+...
T Consensus 112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 999999998766544 59999999999999999987543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-14 Score=110.24 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=91.9
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK 113 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~ 113 (232)
+.+..+.+.+...... ..++. +|||+|||+|..++.+++.+..+++++|+++ ++..++.|...+.
T Consensus 26 p~~~~~~~~~~~~l~~------------~~~~~--~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~ 91 (187)
T 2fhp_A 26 PTTDKVKESIFNMIGP------------YFDGG--MALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK 91 (187)
T ss_dssp CCCHHHHHHHHHHHCS------------CCSSC--EEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHh------------hcCCC--CEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 4455566666554420 23567 9999999999999988887756999999998 5777888877665
Q ss_pred CCCCCceEEEEeecCCCcc-cccCCCCccEEEEcccCCCcccHHHHHHHH--HHhhCCCcEEEEEEeecC
Q 026858 114 PVLNKSLKTSVLYWNNQDQ-INALKPPFDLVIAADVVYIEESAAQLVRAM--EALVADDGVVLLGYQLRS 180 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l--~~~l~pgG~l~i~~~~r~ 180 (232)
+..++.+...|+..... .....++||+|+++.+ |........+..+ .++|+|||.+++......
T Consensus 92 --~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 92 --EPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp --CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred --CCcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 33456777777644221 1111468999998776 4456777888888 778999999998875543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-13 Score=104.97 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=79.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++..+. +++++|+++. +..++. .. ..++.+...|+... ...++||+|
T Consensus 46 ~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~---~~~~~~~~~d~~~~----~~~~~~D~v 111 (218)
T 3ou2_A 46 IRG--DVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HG---LDNVEFRQQDLFDW----TPDRQWDAV 111 (218)
T ss_dssp SCS--EEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GC---CTTEEEEECCTTSC----CCSSCEEEE
T ss_pred CCC--eEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cC---CCCeEEEecccccC----CCCCceeEE
Confidence 556 999999999999999998887 9999999984 333333 22 13467888777554 235689999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+++.++++..+ ...+++.+.++|+|||.+++....+
T Consensus 112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999986665 5899999999999999999986543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-13 Score=112.41 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=97.7
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
+-.|.+ ..+++...+|.+..+. .-..+..+.+.+ . ..++. +|||+|||+|.++..+++
T Consensus 159 ~~~y~~--~~~~~~~~~gvf~~~~-~d~~~~~ll~~l----~-------------~~~~~--~VLDlGcG~G~~~~~la~ 216 (343)
T 2pjd_A 159 WGEYSV--DGLTVKTLPGVFSRDG-LDVGSQLLLSTL----T-------------PHTKG--KVLDVGCGAGVLSVAFAR 216 (343)
T ss_dssp CEEEEE--TTEEEEECTTCTTSSS-CCHHHHHHHHHS----C-------------TTCCS--BCCBTTCTTSHHHHHHHH
T ss_pred cceeec--cceEEEecCCccCCCC-CcHHHHHHHHhc----C-------------cCCCC--eEEEecCccCHHHHHHHH
Confidence 344555 3456667777555433 222344444444 2 12345 899999999999999988
Q ss_pred hCC-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCC-----cccHHHHHH
Q 026858 88 LGL-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYI-----EESAAQLVR 160 (232)
Q Consensus 88 ~~~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~ 160 (232)
.+. .+++++|+|+ ++..++.+...+... +.+...|.... ..++||+|+++.++++ ......+++
T Consensus 217 ~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~----~~~~~~d~~~~-----~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~ 287 (343)
T 2pjd_A 217 HSPKIRLTLCDVSAPAVEASRATLAANGVE----GEVFASNVFSE-----VKGRFDMIISNPPFHDGMQTSLDAAQTLIR 287 (343)
T ss_dssp HCTTCBCEEEESBHHHHHHHHHHHHHTTCC----CEEEECSTTTT-----CCSCEEEEEECCCCCSSSHHHHHHHHHHHH
T ss_pred HCCCCEEEEEECCHHHHHHHHHHHHHhCCC----CEEEEcccccc-----ccCCeeEEEECCCcccCccCCHHHHHHHHH
Confidence 752 3999999998 577888887776532 24444444322 2468999999988864 345788999
Q ss_pred HHHHhhCCCcEEEEEEeecC
Q 026858 161 AMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 161 ~l~~~l~pgG~l~i~~~~r~ 180 (232)
.+.++|+|||.+++......
T Consensus 288 ~~~~~LkpgG~l~i~~~~~~ 307 (343)
T 2pjd_A 288 GAVRHLNSGGELRIVANAFL 307 (343)
T ss_dssp HHGGGEEEEEEEEEEEETTS
T ss_pred HHHHhCCCCcEEEEEEcCCC
Confidence 99999999999999876543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=111.99 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCC-CceEEEEeecCCCcccccCCCC-cc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLN-KSLKTSVLYWNNQDQINALKPP-FD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~-fD 141 (232)
++. +|||+|||+|.+++.++..++.+|+++|+|+ ++..+++|+..++ +. .++.+...|+...... ...++ ||
T Consensus 53 ~~~--~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~-~~~~~~fD 127 (201)
T 2ift_A 53 HQS--ECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQ-PQNQPHFD 127 (201)
T ss_dssp TTC--EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT--CCTTTEEEECSCHHHHTTS-CCSSCCEE
T ss_pred CCC--eEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhC--CCccceEEEECCHHHHHHh-hccCCCCC
Confidence 456 9999999999999987777766999999998 5778888887765 21 3567777665432210 01357 99
Q ss_pred EEEEcccCCCcccHHHHHHHH--HHhhCCCcEEEEEEeecC
Q 026858 142 LVIAADVVYIEESAAQLVRAM--EALVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l--~~~l~pgG~l~i~~~~r~ 180 (232)
+|+++.+ |.......+++.+ .++|+|||.+++......
T Consensus 128 ~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 128 VVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp EEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred EEEECCC-CCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 9998777 4467788888888 557999999999876543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.1e-13 Score=107.83 Aligned_cols=106 Identities=10% Similarity=0.014 Sum_probs=81.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC--CCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL--KPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~~~fD 141 (232)
++. +|||||||+|..+..+++.+. +|+++|+|+. +..++++.. ..++.+...|+......... ...||
T Consensus 56 ~~~--~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d 126 (245)
T 3ggd_A 56 PEL--PLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA 126 (245)
T ss_dssp TTS--CEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred CCC--eEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence 556 999999999999999999887 9999999984 445544331 12568888777654321111 12499
Q ss_pred EEEEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|++..++++.. +...+++.+.++|+|||++++.....
T Consensus 127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999999998776 88999999999999999999887544
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=117.53 Aligned_cols=105 Identities=17% Similarity=0.232 Sum_probs=86.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||||||+|.+++.+++.++.+|+++|+|+++..++++...++ +..++.+...++.... ...++||+
T Consensus 64 ~~~~~--~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~--~~~~v~~~~~d~~~~~---~~~~~fD~ 136 (349)
T 3q7e_A 64 LFKDK--VVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANK--LDHVVTIIKGKVEEVE---LPVEKVDI 136 (349)
T ss_dssp HHTTC--EEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTT--CTTTEEEEESCTTTCC---CSSSCEEE
T ss_pred cCCCC--EEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcC--CCCcEEEEECcHHHcc---CCCCceEE
Confidence 45778 99999999999999999988779999999987778888877776 4456888888876653 12468999
Q ss_pred EEEccc---CCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIAADV---VYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~~~~---~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
|++..+ +.+......++..+.++|+|||.++.
T Consensus 137 Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 137 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 998654 34557899999999999999999864
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=113.01 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=84.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
.++. +|||||||+|..+..++.. +. +|+++|+|+. +..++++..... .++.+...|+.... ..++
T Consensus 21 ~~~~--~vLDiGcG~G~~~~~l~~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~----~~v~~~~~d~~~~~----~~~~ 89 (284)
T 3gu3_A 21 TKPV--HIVDYGCGYGYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIE----LNDK 89 (284)
T ss_dssp CSCC--EEEEETCTTTHHHHHHTTTSCTTC-EEEEEESCHHHHHHHHHHHHSSS----SEEEEEESCTTTCC----CSSC
T ss_pred CCCC--eEEEecCCCCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHhcC----CceEEEEcchhhcC----cCCC
Confidence 3566 9999999999999999876 34 9999999984 556666555433 25678887776533 2468
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
||+|++..++++..+...+++.+.++|+|||.+++....
T Consensus 90 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 90 YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred eeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999999999998899999999999999999999988755
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=111.50 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=92.0
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKP 114 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~ 114 (232)
...+.+++..... ..++. +|||||||+|..+..+++.. ..+++++|+++ ++..++.+...+..
T Consensus 22 ~~~l~~~l~~~~~-------------~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 86 (276)
T 3mgg_A 22 AETLEKLLHHDTV-------------YPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI 86 (276)
T ss_dssp -CHHHHHHHTTCC-------------CCTTC--EEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhccc-------------CCCCC--eEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3445566655444 44677 99999999999999998872 34999999998 46667776665542
Q ss_pred CCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 115 VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.++.+...|..... ...++||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 87 ---~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 87 ---KNVKFLQANIFSLP---FEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp ---CSEEEEECCGGGCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---CCcEEEEcccccCC---CCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 24677777765432 2356899999999999888999999999999999999999763
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-13 Score=106.82 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=79.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.++..+++.+..+++++|+++. +..++++... ...+.+...|+.... ...++||+|
T Consensus 42 ~~~--~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~---~~~~~fD~v 111 (215)
T 2pxx_A 42 PED--RILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLD---FPSASFDVV 111 (215)
T ss_dssp TTC--CEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCC---SCSSCEEEE
T ss_pred CCC--eEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCC---CCCCcccEE
Confidence 556 99999999999999999887658999999984 5555554432 134677777765432 234689999
Q ss_pred EEcccCCC---------------cccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYI---------------EESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~---------------~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
++..+++. ......+++.+.++|+|||.+++.....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 112 LEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp EEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 99777632 2366889999999999999999988655
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-12 Score=100.58 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=71.3
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||+|||+|..+..++.. +..+|+++|+|+. +..+....+.. .++.+...|...........++||
T Consensus 56 ~~g~--~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~fD 128 (210)
T 1nt2_A 56 RGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEKVD 128 (210)
T ss_dssp CSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCC--EEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhccccccee
Confidence 3667 9999999999999988876 3348999999984 44444433322 124555545443211111236899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+++. ........+++++.++|||||++++..+
T Consensus 129 ~V~~~~--~~~~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 129 LIYQDI--AQKNQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEec--cChhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999862 2334455668999999999999999854
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-14 Score=117.34 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=82.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC-CCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV-LNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||||||+|..+..++..++ +|+++|+|+ ++..++++....... ...++.+...++......-...++||
T Consensus 56 ~~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 56 HGCH--RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp TTCC--EEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred cCCC--EEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 4566 999999999999999999888 999999998 466666655332211 11234555555543210002346899
Q ss_pred EEEEc-ccCCCccc-------HHHHHHHHHHhhCCCcEEEEEEee
Q 026858 142 LVIAA-DVVYIEES-------AAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 142 ~Ii~~-~~~~~~~~-------~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+|++. .++++..+ ...+++.+.++|+|||.+++....
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99998 78877666 999999999999999999998754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=108.38 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=87.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..++.. +..+++++|+++ ++..++.+...+. .. .+.+...|+.... ..++||+
T Consensus 65 ~~~--~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~----~~~~~D~ 135 (207)
T 1jsx_A 65 QGE--RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK--LE-NIEPVQSRVEEFP----SEPPFDG 135 (207)
T ss_dssp CSS--EEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT--CS-SEEEEECCTTTSC----CCSCEEE
T ss_pred CCC--eEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CeEEEecchhhCC----ccCCcCE
Confidence 366 9999999999999999876 334999999998 5677777777654 22 2788888776543 2357999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
|++.. ......+++.+.++|+|||.+++....... +.+.+... +|....+.
T Consensus 136 i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~~~~~-g~~~~~~~ 186 (207)
T 1jsx_A 136 VISRA----FASLNDMVSWCHHLPGEQGRFYALKGQMPE---DEIALLPE-EYQVESVV 186 (207)
T ss_dssp EECSC----SSSHHHHHHHHTTSEEEEEEEEEEESSCCH---HHHHTSCT-TEEEEEEE
T ss_pred EEEec----cCCHHHHHHHHHHhcCCCcEEEEEeCCCch---HHHHHHhc-CCceeeee
Confidence 99753 256789999999999999999988644332 23333333 78766543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-13 Score=108.63 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=87.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++..++ +++++|+|+. +..++.+ +.+...|..... .+..+++||+|
T Consensus 41 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~-~~~~~~~fD~i 105 (240)
T 3dli_A 41 GCR--RVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYL-KSLPDKYLDGV 105 (240)
T ss_dssp TCS--CEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-----------SEEECSCHHHHH-HTSCTTCBSEE
T ss_pred CCC--eEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-----------cceeeccHHHHh-hhcCCCCeeEE
Confidence 556 999999999999999998888 8999999984 3333332 244444432211 01234689999
Q ss_pred EEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeecCh----------------hHHHHHHHHHhc-CceEEEecC
Q 026858 144 IAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQLRSP----------------EAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 144 i~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~~----------------~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
++..++++.. ++..+++.+.++|+|||.+++....... .....+.+.+.+ +|.+..+..
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence 9999998766 6799999999999999999998764331 112445555554 888766543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=108.86 Aligned_cols=105 Identities=11% Similarity=0.136 Sum_probs=79.4
Q ss_pred CCCCCcEEEeCccccHHH-HHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAG-MAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s-~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+ ..++..+. +++++|+|+ ++..++++...+.. ++.+...|..... ...++||+
T Consensus 23 ~~~--~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~---~~~~~fD~ 92 (209)
T 2p8j_A 23 LDK--TVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF----KLNISKGDIRKLP---FKDESMSF 92 (209)
T ss_dssp SCS--EEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC----CCCEEECCTTSCC---SCTTCEEE
T ss_pred CCC--EEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC----ceEEEECchhhCC---CCCCceeE
Confidence 556 9999999999974 44455576 999999998 46666666554432 2466666665432 23468999
Q ss_pred EEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 143 VIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 143 Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|++..++++. .+...+++.+.++|+|||.+++.....
T Consensus 93 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 93 VYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 9999888766 788999999999999999999987654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-13 Score=111.36 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=83.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHH--hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---cCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYL--LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---ALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~--~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~ 138 (232)
++. +|||||||+|..+..+++ .+..+|+++|+|+ ++..++++..... ....++.+...|+....... ...+
T Consensus 36 ~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERK--LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP-DTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCS--EEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCC--EEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCCCceEEEEcCHHhCCccccccccCC
Confidence 556 999999999999999985 2344999999999 4667777666541 12356788888876644211 0126
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+||+|+++.++++. +...+++.+.++|+|||.+++.
T Consensus 113 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 113 KIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 89999999999888 9999999999999999999884
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-13 Score=112.26 Aligned_cols=102 Identities=18% Similarity=0.339 Sum_probs=83.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.++ +|+++|+|+ ++..++.+...++. ++.+...|+..... .++||+|
T Consensus 120 ~~~--~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~----~~~fD~i 188 (286)
T 3m70_A 120 SPC--KVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL----NISTALYDINAANI----QENYDFI 188 (286)
T ss_dssp CSC--EEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC----CEEEEECCGGGCCC----CSCEEEE
T ss_pred CCC--cEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC----ceEEEEeccccccc----cCCccEE
Confidence 556 999999999999999999888 999999998 56777777766542 46777777654432 5689999
Q ss_pred EEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+++.++++ ......+++.+.++|+|||.+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 99998874 46688999999999999999887653
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-13 Score=104.04 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=97.1
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKP 114 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~ 114 (232)
....+..++..... ..++. +|||+|||+|..+..+++.+ .+++++|+++ ++..++.+...+.
T Consensus 17 ~~~~~~~~~~~~~~-------------~~~~~--~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~- 79 (192)
T 1l3i_A 17 TAMEVRCLIMCLAE-------------PGKND--VAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHG- 79 (192)
T ss_dssp CCHHHHHHHHHHHC-------------CCTTC--EEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhcC-------------CCCCC--EEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcC-
Confidence 34445556655544 44667 99999999999999999887 4999999998 5677777776654
Q ss_pred CCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-
Q 026858 115 VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE- 193 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~- 193 (232)
...++.+...|+.... + ..+.||+|++..++. ....+++.+.++|+|||.+++..... .....+.+.+.+
T Consensus 80 -~~~~~~~~~~d~~~~~--~-~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~--~~~~~~~~~l~~~ 150 (192)
T 1l3i_A 80 -LGDNVTLMEGDAPEAL--C-KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILL--ETKFEAMECLRDL 150 (192)
T ss_dssp -CCTTEEEEESCHHHHH--T-TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBH--HHHHHHHHHHHHT
T ss_pred -CCcceEEEecCHHHhc--c-cCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCc--chHHHHHHHHHHC
Confidence 2245677776654311 1 114799999976653 56889999999999999999887543 234455555553
Q ss_pred CceEE
Q 026858 194 VFLIE 198 (232)
Q Consensus 194 ~f~~~ 198 (232)
+|.++
T Consensus 151 g~~~~ 155 (192)
T 1l3i_A 151 GFDVN 155 (192)
T ss_dssp TCCCE
T ss_pred CCceE
Confidence 66443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.6e-13 Score=124.26 Aligned_cols=187 Identities=13% Similarity=0.169 Sum_probs=127.0
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.+.-.|-.+.|.-..+ ..||. +........++.... +++ +|||+|||||..++.+++
T Consensus 501 ~~~v~E~g~~~~v~~~~~-~~tG~--f~d~r~~r~~l~~~~----------------~g~--~VLDlg~GtG~~sl~aa~ 559 (703)
T 3v97_A 501 FLEVTEYNAHLWVNLTDY-LDTGL--FLDHRIARRMLGQMS----------------KGK--DFLNLFSYTGSATVHAGL 559 (703)
T ss_dssp CEEEEETTEEEEECSSSS-SSCSC--CGGGHHHHHHHHHHC----------------TTC--EEEEESCTTCHHHHHHHH
T ss_pred eEEEEECCEEEEEecccc-ccCCC--cccHHHHHHHHHHhc----------------CCC--cEEEeeechhHHHHHHHH
Confidence 455555665555543333 33443 333444445554422 567 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCC-CceEEEEeecCCCcccccCCCCccEEEEcccCCC-----------ccc
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLN-KSLKTSVLYWNNQDQINALKPPFDLVIAADVVYI-----------EES 154 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-----------~~~ 154 (232)
.|+.+|+++|+|+ ++..+++|+..|+ +. .++.+...|+.... ....++||+|++.++.+. ...
T Consensus 560 ~ga~~V~aVD~s~~al~~a~~N~~~ng--l~~~~v~~i~~D~~~~l--~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~ 635 (703)
T 3v97_A 560 GGARSTTTVDMSRTYLEWAERNLRLNG--LTGRAHRLIQADCLAWL--REANEQFDLIFIDPPTFSNSKRMEDAFDVQRD 635 (703)
T ss_dssp TTCSEEEEEESCHHHHHHHHHHHHHTT--CCSTTEEEEESCHHHHH--HHCCCCEEEEEECCCSBC-------CCBHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEEecCHHHHH--HhcCCCccEEEECCccccCCccchhHHHHHHH
Confidence 8887899999998 6889999999887 33 45788877754421 122468999999776542 135
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCCCCCCC-CCceE-EEEEEe
Q 026858 155 AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYG-YEETD-VYILRK 221 (232)
Q Consensus 155 ~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~-l~~~~~ 221 (232)
...++..+.++|+|||.++++...+........+ ...+|..+.+....++.+|. .+.+| .|.+++
T Consensus 636 ~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l--~~~g~~~~~i~~~~lp~df~~~~~ih~~w~i~~ 702 (703)
T 3v97_A 636 HLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGL--AKLGLKAQEITQKTLSQDFARNRQIHNCWLITA 702 (703)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHH--HHTTEEEEECTTTTCCGGGTTCSSCCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCcccccCHHHH--HHcCCceeeeeeccCCCCCCCCCcceEEEEEee
Confidence 6678899999999999999888664432222222 23478888999888888884 44444 666654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=111.62 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=83.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.+..+++++|+++ ++..++++..... ...++.+...|+..... . ..++||+|
T Consensus 64 ~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~-~-~~~~fD~v 137 (298)
T 1ri5_A 64 RGD--SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHM-D-LGKEFDVI 137 (298)
T ss_dssp TTC--EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCC-C-CSSCEEEE
T ss_pred CCC--eEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCcccccc-C-CCCCcCEE
Confidence 556 9999999999988888887766999999998 4666666665443 23456777777655431 0 24689999
Q ss_pred EEcccCCC----cccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYI----EESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~----~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++++ ..+...+++.+.++|+|||.+++....
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 99988854 567889999999999999999998754
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.8e-13 Score=109.86 Aligned_cols=104 Identities=12% Similarity=0.210 Sum_probs=82.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +++++|+|+. +..++++. .. ...++.+...|+.... ..+++||+|
T Consensus 39 ~~~--~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~---~~~~~~~~~~d~~~~~---~~~~~fD~v 108 (263)
T 2yqz_A 39 EEP--VFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AG---VDRKVQVVQADARAIP---LPDESVHGV 108 (263)
T ss_dssp SCC--EEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TT---SCTTEEEEESCTTSCC---SCTTCEEEE
T ss_pred CCC--EEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hc---cCCceEEEEcccccCC---CCCCCeeEE
Confidence 566 999999999999999998876 9999999984 55555544 11 2345788877775432 234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++++..+...+++.+.++|+|||.+++....
T Consensus 109 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (263)
T 2yqz_A 109 IVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQ 143 (263)
T ss_dssp EEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecC
Confidence 99999998889999999999999999999987443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=105.12 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=81.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+++. +..+++++|+++ ++..++++...++ +..++.+...|+..... ...++||
T Consensus 22 ~~~--~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~~fD 95 (197)
T 3eey_A 22 EGD--TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDK--YIDCPVK 95 (197)
T ss_dssp TTC--EEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGG--TCCSCEE
T ss_pred CCC--EEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhh--hccCCce
Confidence 667 9999999999999998876 334999999998 5777788877664 33457777777644332 2346899
Q ss_pred EEEEcccCCC---------cccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 142 LVIAADVVYI---------EESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 142 ~Ii~~~~~~~---------~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+|+++.+++. ......+++.+.++|+|||++++....
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 9998775522 124467999999999999999988643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=108.68 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=81.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.+++.++..++.+|+++|+|+ ++..+++|...++. .++.+...|+.... +...++||+|
T Consensus 54 ~~~--~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~---~~v~~~~~D~~~~~--~~~~~~fD~V 126 (202)
T 2fpo_A 54 VDA--QCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMSFL--AQKGTPHNIV 126 (202)
T ss_dssp TTC--EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHHHH--SSCCCCEEEE
T ss_pred CCC--eEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEECCHHHHH--hhcCCCCCEE
Confidence 556 9999999999999988777766999999998 57788888877652 35677776654321 1124579999
Q ss_pred EEcccCCCcccHHHHHHHHHH--hhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEA--LVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~--~l~pgG~l~i~~~~r 179 (232)
++..+ |.......+++.+.+ +|+|||.+++.....
T Consensus 127 ~~~~p-~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 127 FVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp EECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred EECCC-CCCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 98776 556677888888877 499999999887544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-13 Score=107.80 Aligned_cols=100 Identities=12% Similarity=0.003 Sum_probs=80.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +|||||||+|..+..++.. +. +++++|+|+. +..++++ . .++.+...|+.... ..++|
T Consensus 32 ~~~~--~vLdiG~G~G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~----~----~~~~~~~~d~~~~~----~~~~f 96 (259)
T 2p35_A 32 ERVL--NGYDLGCGPGNSTELLTDRYGVN-VITGIDSDDDMLEKAADR----L----PNTNFGKADLATWK----PAQKA 96 (259)
T ss_dssp SCCS--SEEEETCTTTHHHHHHHHHHCTT-SEEEEESCHHHHHHHHHH----S----TTSEEEECCTTTCC----CSSCE
T ss_pred CCCC--EEEEecCcCCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHh----C----CCcEEEECChhhcC----ccCCc
Confidence 3556 9999999999999998877 55 9999999984 4444443 1 23577777765433 24689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 97 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 99999999998889999999999999999999998754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=111.22 Aligned_cols=171 Identities=11% Similarity=0.057 Sum_probs=108.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.++-.|..+.+....+ ..+|.. +......+++.+.... ..++. +|||+|||+|..++.+++
T Consensus 111 ~~~i~e~g~~f~v~~~~~-~~tg~f--~dq~~~~~~l~~~~~~------------~~~~~--~VLDlgcGtG~~sl~la~ 173 (332)
T 2igt_A 111 TWPLSLLGVEFLGRFTAF-RHVGVF--PEQIVHWEWLKNAVET------------ADRPL--KVLNLFGYTGVASLVAAA 173 (332)
T ss_dssp EEEEEETTEEEEEECCSS-SCCSCC--GGGHHHHHHHHHHHHH------------SSSCC--EEEEETCTTCHHHHHHHH
T ss_pred ceEEEECCEEEEEecCcc-ccceec--hHHHHHHHHHHHHHHh------------cCCCC--cEEEcccccCHHHHHHHH
Confidence 445555666666665544 334332 3344433334332210 01446 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCC-ceEEEEeecCCCccc-ccCCCCccEEEEcccCCCc----------cc
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNK-SLKTSVLYWNNQDQI-NALKPPFDLVIAADVVYIE----------ES 154 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~-~i~~~~~d~~~~~~~-~~~~~~fD~Ii~~~~~~~~----------~~ 154 (232)
.++ +|+++|+|+ ++..+++|+..++ +.. ++.+...|+...... ....++||+|++.++.+.. ..
T Consensus 174 ~ga-~V~~VD~s~~al~~a~~n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~ 250 (332)
T 2igt_A 174 AGA-EVTHVDASKKAIGWAKENQVLAG--LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDH 250 (332)
T ss_dssp TTC-EEEEECSCHHHHHHHHHHHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHH
T ss_pred cCC-EEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHH
Confidence 888 999999998 6788888988876 322 367776665432210 0013579999997764421 24
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-----cCceEE
Q 026858 155 AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-----EVFLIE 198 (232)
Q Consensus 155 ~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-----~~f~~~ 198 (232)
...++..+.++|+|||.+++............|.+.+. .++.++
T Consensus 251 ~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 251 LPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 67889999999999999887665443223344444433 256554
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-12 Score=104.48 Aligned_cols=128 Identities=10% Similarity=0.091 Sum_probs=86.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +|||+|||+|..+..+++. +..+++++|+++ ++..+..++..+ .++.+...|.......+...++|
T Consensus 76 ~~~~--~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 76 KPGA--KVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCCCE
T ss_pred CCCC--EEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCCcE
Confidence 3667 9999999999999999876 234999999998 455555655554 24677777766543233335689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC----hhHHHHH---HHHHhc-CceEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLF---WEMCAE-VFLIEKV 200 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~----~~~~~~~---~~~~~~-~f~~~~~ 200 (232)
|+|++..+ .......++..+.++|+|||.+++...... ......| .+.+.+ +|.+...
T Consensus 149 D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 149 DVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQ 214 (233)
T ss_dssp EEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEE
T ss_pred EEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 99998544 334446678899999999999999765421 0111111 344444 8987764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=113.57 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=83.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||||||+|.+++.+++.++.+|+++|.++++..++++...++ +..++.+...|..... ...++||+
T Consensus 36 ~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~~---~~~~~~D~ 108 (328)
T 1g6q_1 36 LFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNG--FSDKITLLRGKLEDVH---LPFPKVDI 108 (328)
T ss_dssp HHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTT--CTTTEEEEESCTTTSC---CSSSCEEE
T ss_pred hcCCC--EEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcC--CCCCEEEEECchhhcc---CCCCcccE
Confidence 44667 99999999999999999988779999999987777777777765 4456788887765543 12367999
Q ss_pred EEEcccC---CCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIAADVV---YIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~~~~~---~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
|++..+. .+...+..++..+.++|+|||.++.
T Consensus 109 Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 9987543 3566788999999999999999873
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-13 Score=107.20 Aligned_cols=157 Identities=10% Similarity=0.113 Sum_probs=94.1
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK 113 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~ 113 (232)
.++.-|.+.+..... ...++ +|||||||||..+..+++.++.+|+++|+|+ ++..++++...
T Consensus 20 rg~~kL~~~L~~~~~-------------~~~g~--~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~-- 82 (232)
T 3opn_A 20 RGGLKLEKALKEFHL-------------EINGK--TCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER-- 82 (232)
T ss_dssp TTHHHHHHHHHHTTC-------------CCTTC--EEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT--
T ss_pred CcHHHHHHHHHHcCC-------------CCCCC--EEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc--
Confidence 345556666665443 44667 9999999999999999988866999999998 44443332111
Q ss_pred CCCCCceEEE-EeecCCCcccccCCC-CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec------------
Q 026858 114 PVLNKSLKTS-VLYWNNQDQINALKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR------------ 179 (232)
Q Consensus 114 ~~~~~~i~~~-~~d~~~~~~~~~~~~-~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r------------ 179 (232)
+... ..++..... ..... .||.+.+..++.+ +..++..+.++|+|||.+++.....
T Consensus 83 ------~~~~~~~~~~~~~~-~~~~~~~~d~~~~D~v~~~---l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G 152 (232)
T 3opn_A 83 ------VVVMEQFNFRNAVL-ADFEQGRPSFTSIDVSFIS---LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNG 152 (232)
T ss_dssp ------EEEECSCCGGGCCG-GGCCSCCCSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CC
T ss_pred ------ccccccceEEEeCH-hHcCcCCCCEEEEEEEhhh---HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCC
Confidence 1110 111111010 01112 3566554333332 3779999999999999999873110
Q ss_pred ---Ch----hHHHHHHHHHhc-CceEEEecCCCCCCCCCCCceEEEE
Q 026858 180 ---SP----EAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYEETDVYI 218 (232)
Q Consensus 180 ---~~----~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~ 218 (232)
.+ ...+.+.+.+.. ||.+..+....+...+...+.-++.
T Consensus 153 ~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~ 199 (232)
T 3opn_A 153 IIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHL 199 (232)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTTTBCCEEEEE
T ss_pred eecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCCCCHHHHHHH
Confidence 11 123445555654 9999988877666555555544444
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=115.40 Aligned_cols=111 Identities=16% Similarity=0.306 Sum_probs=81.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCC---------------------------
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKP--------------------------- 114 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~--------------------------- 114 (232)
++++ +|||||||+|..++.+++. +..+|+++|+++ ++..+++++.....
T Consensus 45 ~~~~--~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 45 FRGR--DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp TTTS--EEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred cCCC--cEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 3677 9999999999999999887 444999999998 45566555433210
Q ss_pred ----------------------------CCCCceEEEEeecCCCcc--cccCCCCccEEEEcccCCCc------ccHHHH
Q 026858 115 ----------------------------VLNKSLKTSVLYWNNQDQ--INALKPPFDLVIAADVVYIE------ESAAQL 158 (232)
Q Consensus 115 ----------------------------~~~~~i~~~~~d~~~~~~--~~~~~~~fD~Ii~~~~~~~~------~~~~~~ 158 (232)
.+..++.+...|+..... .+...++||+|++..++.+. .....+
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 012468888888765541 11235689999999987443 378899
Q ss_pred HHHHHHhhCCCcEEEEEE
Q 026858 159 VRAMEALVADDGVVLLGY 176 (232)
Q Consensus 159 l~~l~~~l~pgG~l~i~~ 176 (232)
++.++++|+|||++++..
T Consensus 203 l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHhCCCcEEEEec
Confidence 999999999999999863
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=112.04 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCccccHHHHHHH--HhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFY--LLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la--~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||||||+|..+..++ ..+..+|+++|+++ ++..++++...++ ...++.+...|+.... ..++||
T Consensus 118 ~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~fD 189 (305)
T 3ocj_A 118 PGC--VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKLD----TREGYD 189 (305)
T ss_dssp TTC--EEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGCC----CCSCEE
T ss_pred CCC--EEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcCC----ccCCeE
Confidence 566 99999999999999885 33334999999998 5667777766554 3445788888776543 137899
Q ss_pred EEEEcccCCCcccHHH---HHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQ---LVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~---~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+++.++++..+... +++.+.++|+|||++++...
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999888876555544 79999999999999999763
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-13 Score=109.59 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=79.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++..+. +|+++|+|+. +..++.+. .++.+...|+.... ..++||+|
T Consensus 57 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~----~~~~fD~v 121 (279)
T 3ccf_A 57 PGE--FILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY--------PHLHFDVADARNFR----VDKPLDAV 121 (279)
T ss_dssp TTC--EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC--------TTSCEEECCTTTCC----CSSCEEEE
T ss_pred CCC--EEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC--------CCCEEEECChhhCC----cCCCcCEE
Confidence 556 999999999999999988766 9999999984 44444432 22466666665432 24689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
++..++++..+...+++.+.++|+|||.+++.....
T Consensus 122 ~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 122 FSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999988899999999999999999999987654
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-11 Score=105.21 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=105.9
Q ss_pred eEEEeecCeeEEEEEcCCCCCcccee------echHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSV------WPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAA 81 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~------W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~ 81 (232)
.|.+.+.+..+.+..+.+..+...+- .+-...++..+..... ..++. +|||+|||+|.+
T Consensus 153 ~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~~-------------~~~~~--~vLD~gcGsG~~ 217 (354)
T 3tma_A 153 RVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLAD-------------ARPGM--RVLDPFTGSGTI 217 (354)
T ss_dssp EEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHTT-------------CCTTC--CEEESSCTTSHH
T ss_pred EEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHhC-------------CCCCC--EEEeCCCCcCHH
Confidence 77778888887777766533322222 2233456666666554 44667 999999999999
Q ss_pred HHHHHHhC--CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-----
Q 026858 82 GMAFYLLG--LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE----- 153 (232)
Q Consensus 82 s~~la~~~--~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~----- 153 (232)
++.++..+ ..+++++|+++ ++..++.|+..++ +. .+.+...|+.+... ..+.||+|++++++....
T Consensus 218 ~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g--~~-~i~~~~~D~~~~~~---~~~~~D~Ii~npPyg~r~~~~~~ 291 (354)
T 3tma_A 218 ALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG--LS-WIRFLRADARHLPR---FFPEVDRILANPPHGLRLGRKEG 291 (354)
T ss_dssp HHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT--CT-TCEEEECCGGGGGG---TCCCCSEEEECCCSCC----CHH
T ss_pred HHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC--CC-ceEEEeCChhhCcc---ccCCCCEEEECCCCcCccCCccc
Confidence 99998863 23999999998 5778888888776 32 57888887765432 234689999977654211
Q ss_pred ---cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 154 ---SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 154 ---~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
....+++.+.++|+|||++++...
T Consensus 292 ~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 292 LFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp HHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 136788999999999999999874
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-12 Score=101.43 Aligned_cols=130 Identities=10% Similarity=0.028 Sum_probs=91.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..++.+++.. ..+++++|+++ ++..++.++..++ + .++.+...|+..... ....++||+
T Consensus 41 ~~~--~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~v~~~~~d~~~~~~-~~~~~~~D~ 114 (214)
T 1yzh_A 41 DNP--IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG--V-PNIKLLWVDGSDLTD-YFEDGEIDR 114 (214)
T ss_dssp CCC--EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC--C-SSEEEEECCSSCGGG-TSCTTCCSE
T ss_pred CCC--eEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC--C-CCEEEEeCCHHHHHh-hcCCCCCCE
Confidence 355 99999999999999998872 33999999998 5777777777665 2 357888887765221 012457999
Q ss_pred EEEcccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecC
Q 026858 143 VIAADVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 143 Ii~~~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
|+++.+..+.. ....+++.+.++|+|||.+++...... ......+.+. .+|.+..+..
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG--LFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEES
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHH--HHHHHHHHHHHCCCeeeeccc
Confidence 99986543322 236799999999999999999764322 2334444444 3788776653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.44 E-value=9.3e-14 Score=106.14 Aligned_cols=107 Identities=22% Similarity=0.220 Sum_probs=80.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..+++.+. +++++|+++ ++..++.+...+.. ++.+...|+.+... .....++||+
T Consensus 41 ~~~--~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~~~D~ 113 (171)
T 1ws6_A 41 RRG--RFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL----GARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TCC--EEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC----CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred CCC--eEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC----ceEEEeccHHHHHHhhhccCCceEE
Confidence 556 999999999999999999887 699999998 57777777776642 45666666544211 1111247999
Q ss_pred EEEcccCCCcccHHHHHHHHH--HhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIEESAAQLVRAME--ALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~--~~l~pgG~l~i~~~~r~ 180 (232)
|+++.+++ ...+.+++.+. ++|+|||.+++......
T Consensus 114 i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 114 AFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp EEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred EEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 99987755 56667777777 99999999999876554
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-12 Score=105.07 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=82.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchh-------HHHHHHHHHHhcCCCCCCceEEEEee-cCCCccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISP-------VMPALKHNLKRNKPVLNKSLKTSVLY-WNNQDQI 133 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~-------~~~~~~~n~~~~~~~~~~~i~~~~~d-~~~~~~~ 133 (232)
.++. +|||||||+|..+..++.. +. .+++++|+|+ ++..++++...+. +..++.+...| +... ..
T Consensus 42 ~~~~--~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~ 116 (275)
T 3bkx_A 42 KPGE--KILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTNLSDD-LG 116 (275)
T ss_dssp CTTC--EEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCCTTTC-CG
T ss_pred CCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECChhhhc-cC
Confidence 3667 9999999999999999877 42 3999999997 4667777666543 33456777776 2221 12
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+...++||+|++..++++..+...+++.+.++++|||++++....
T Consensus 117 ~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp GGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred CCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 223468999999999988888888888888888889999997643
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-12 Score=102.87 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=77.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+ +..+++++|+++. +..++++. ..+.+...|..... ..+++||+|
T Consensus 36 ~~~--~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~~~fD~v 99 (211)
T 2gs9_A 36 PGE--SLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALP---FPGESFDVV 99 (211)
T ss_dssp CCS--EEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCC---SCSSCEEEE
T ss_pred CCC--eEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCC---CCCCcEEEE
Confidence 556 9999999999988776 5448999999984 44444432 22466666554432 234689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++..++++..+...+++.+.++|+|||.+++....+.
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 100 LLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999888999999999999999999999987665
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=105.85 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=81.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.+..+++++|+++ ++..++.+...++ +..++.+...|+.... ....+.||+|
T Consensus 31 ~~~--~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~--~~~~~~fD~i 104 (177)
T 2esr_A 31 NGG--RVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAI--DCLTGRFDLV 104 (177)
T ss_dssp CSC--EEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHH--HHBCSCEEEE
T ss_pred CCC--eEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcHHHhH--HhhcCCCCEE
Confidence 556 9999999999999999888656999999998 5777778777664 3345677766654321 1224579999
Q ss_pred EEcccCCCcccHHHHHHHHH--HhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAME--ALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~--~~l~pgG~l~i~~~~r~ 180 (232)
+++.++ ........++.+. ++|+|||.+++......
T Consensus 105 ~~~~~~-~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 105 FLDPPY-AKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp EECCSS-HHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EECCCC-CcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 987654 3356677788887 89999999999876554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-13 Score=113.54 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=82.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||||||+|.+++.+++.++.+|+++|.++++..+++++..++ +..++.+...|+.... ..++||+
T Consensus 48 ~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~----~~~~~D~ 119 (348)
T 2y1w_A 48 DFKDK--IVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNN--LTDRIVVIPGKVEEVS----LPEQVDI 119 (348)
T ss_dssp GTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTT--CTTTEEEEESCTTTCC----CSSCEEE
T ss_pred cCCcC--EEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcchhhCC----CCCceeE
Confidence 45677 99999999999999999887779999999986666677766665 4456788888776543 2357999
Q ss_pred EEEcccCCC--cccHHHHHHHHHHhhCCCcEEEEE
Q 026858 143 VIAADVVYI--EESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|++..+.++ .......+..+.++|+|||.+++.
T Consensus 120 Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 120 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred EEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 999877653 345667788889999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-13 Score=105.51 Aligned_cols=138 Identities=12% Similarity=0.119 Sum_probs=94.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+.. +|||||||+|.+++.++.. ++ +|+++|+|+ +++.+++|+..++.. .++.+ .|... ....++||
T Consensus 49 ~~~--~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~--~~v~~--~d~~~----~~~~~~~D 117 (200)
T 3fzg_A 49 HVS--SILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTT--IKYRF--LNKES----DVYKGTYD 117 (200)
T ss_dssp CCS--EEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCS--SEEEE--ECCHH----HHTTSEEE
T ss_pred CCC--eEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCC--ccEEE--ecccc----cCCCCCcC
Confidence 445 9999999999999999876 56 999999999 688889998887633 24444 22211 12346799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE----eecCh----hHHHHHHHHHhc-CceEEEecCCCCCCCCCCC
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY----QLRSP----EAHKLFWEMCAE-VFLIEKVPHEDLHPDYGYE 212 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~----~~r~~----~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~ 212 (232)
+|++..+++.-.+.+..+..+.+.|+|||.++-.. ..|.+ .....|.+...+ .+.+.+.. .+
T Consensus 118 vVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~---------~~ 188 (200)
T 3fzg_A 118 VVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKV---------IG 188 (200)
T ss_dssp EEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEE---------ET
T ss_pred hhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeee---------eC
Confidence 99999999866777777889999999998877554 12221 223445555554 45566553 44
Q ss_pred ceEEEEEEec
Q 026858 213 ETDVYILRKK 222 (232)
Q Consensus 213 ~~~l~~~~~~ 222 (232)
..-+|++++.
T Consensus 189 nEl~y~~~~~ 198 (200)
T 3fzg_A 189 NELVYITSGF 198 (200)
T ss_dssp TEEEEEECCC
T ss_pred ceEEEEEecc
Confidence 4445555543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-12 Score=103.69 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=90.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||||||+|..+..+++. + ..+|+++|+++ ++..+++++...+ +..++.+...|...........++||
T Consensus 63 ~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~l~~~~~~~~fD 138 (248)
T 3tfw_A 63 QAK--RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPALQSLESLGECPAFD 138 (248)
T ss_dssp TCS--EEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHTCCSCCCCS
T ss_pred CCC--EEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHhcCCCCCeE
Confidence 567 9999999999999999886 2 34999999998 5777788777665 44567888877643221111134899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC------------hhHHHHHHHHHhc--CceEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS------------PEAHKLFWEMCAE--VFLIEKV 200 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~------------~~~~~~~~~~~~~--~f~~~~~ 200 (232)
+|++.. .......+++.+.++|+|||.+++...... ......|.+.+.. .|....+
T Consensus 139 ~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (248)
T 3tfw_A 139 LIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL 208 (248)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred EEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence 999854 345678899999999999999988644322 0123556665543 5665544
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.3e-12 Score=107.26 Aligned_cols=128 Identities=14% Similarity=0.106 Sum_probs=94.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. +|||+|||+|..+..+++. +..+++++|+..++..++++..... +..++.+...|+.... +..||+|
T Consensus 202 ~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~-----p~~~D~v 272 (369)
T 3gwz_A 202 GAA--TAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRG--LADRCEILPGDFFETI-----PDGADVY 272 (369)
T ss_dssp TCS--EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT--CTTTEEEEECCTTTCC-----CSSCSEE
T ss_pred cCc--EEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcC--cCCceEEeccCCCCCC-----CCCceEE
Confidence 446 9999999999999988876 2238999999446777777766554 4567899998876222 2379999
Q ss_pred EEcccCCCcccHH--HHHHHHHHhhCCCcEEEEEEeecCh---------------------hHHHHHHHHHhc-CceEEE
Q 026858 144 IAADVVYIEESAA--QLVRAMEALVADDGVVLLGYQLRSP---------------------EAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 144 i~~~~~~~~~~~~--~~l~~l~~~l~pgG~l~i~~~~r~~---------------------~~~~~~~~~~~~-~f~~~~ 199 (232)
++..++++..+.. .++++++++|+|||++++.+..... .+.+.+.+++.+ ||.+.+
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred EhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 9999998666554 7999999999999999998754321 113445555654 888777
Q ss_pred ec
Q 026858 200 VP 201 (232)
Q Consensus 200 ~~ 201 (232)
+.
T Consensus 353 ~~ 354 (369)
T 3gwz_A 353 SL 354 (369)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-12 Score=96.53 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=84.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cc--c
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---IN--A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~--~ 135 (232)
..++. +|||+|||+|..+..+++. +. .+++++|+++ +... .++.+...|+..... .. .
T Consensus 20 ~~~~~--~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~ 84 (180)
T 1ej0_A 20 FKPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERV 84 (180)
T ss_dssp CCTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCC--eEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccC
Confidence 34667 9999999999999988876 32 4999999998 3211 235676666654320 00 2
Q ss_pred CCCCccEEEEcccCCCcccH-----------HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEec
Q 026858 136 LKPPFDLVIAADVVYIEESA-----------AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~-----------~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~ 201 (232)
..++||+|+++.+++..... ..+++.+.++|+|||.+++...... ....+.+.+...|....+.
T Consensus 85 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 159 (180)
T 1ej0_A 85 GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRSLFTKVKVR 159 (180)
T ss_dssp TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--THHHHHHHHHHHEEEEEEE
T ss_pred CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--cHHHHHHHHHHhhhhEEee
Confidence 24689999998887655544 6889999999999999999776543 2345555555556554443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=110.21 Aligned_cols=114 Identities=12% Similarity=0.124 Sum_probs=74.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCC---ceEEEEeecCCCc---cc--cc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNK---SLKTSVLYWNNQD---QI--NA 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~---~i~~~~~d~~~~~---~~--~~ 135 (232)
++. +|||||||+|.....++..+..+|+|+|+|+ ++..++............ .+.+...+..... .+ ..
T Consensus 48 ~~~--~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKR--KVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCC--EEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCC--eEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 456 9999999999755545555444999999999 455555544332211000 1345555542221 01 11
Q ss_pred CCCCccEEEEcccCCC---cccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 136 LKPPFDLVIAADVVYI---EESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
..++||+|++..++++ ......++++++++|+|||.+++....+.
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 2468999999888753 34678999999999999999999886543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=102.24 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=78.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|..+..+++.+. +|+++|+++ ++..++++...++ . .++.+...|+..... ..++||
T Consensus 75 ~~~~~--~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~---~~~~~D 145 (210)
T 3lbf_A 75 LTPQS--RVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQARRRLKNLD--L-HNVSTRHGDGWQGWQ---ARAPFD 145 (210)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHHHTT--C-CSEEEEESCGGGCCG---GGCCEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcC--C-CceEEEECCcccCCc---cCCCcc
Confidence 44667 999999999999999998865 999999998 4677777776654 2 246777777655332 246899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+|++..++++... .+.++|+|||++++....
T Consensus 146 ~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 146 AIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred EEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 9999888765443 578999999999998754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=111.33 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=86.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
+++ +|||+|||+|..++.+++.++.+|+++|+++ ++..+++|+..|+.. ..++.+...|+..... ......+||+
T Consensus 220 ~~~--~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~v~~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 220 ENK--RVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp TTC--EEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-GGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCC--eEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ccceEEEECCHHHHHHHHHhcCCCCCE
Confidence 456 9999999999999999998777999999998 688889999888620 2357777776544321 1111357999
Q ss_pred EEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++.++.+.. .....++..+.++|+|||.++++.....
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 9997765432 5678889999999999999999876554
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-12 Score=108.34 Aligned_cols=106 Identities=10% Similarity=0.172 Sum_probs=81.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCc-ccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQD-QINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~fD~ 142 (232)
... +|||||||+|..+..+++. +..+++++|+..++..++++..... +..++.+...|+.... + .+++||+
T Consensus 179 ~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~---~p~~~D~ 251 (363)
T 3dp7_A 179 HPK--RLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVP---FPTGFDA 251 (363)
T ss_dssp CCS--EEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCC---CCCCCSE
T ss_pred CCC--EEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcC--cccceEEEEccccccCCC---CCCCcCE
Confidence 445 9999999999999988875 2338999999546777777665443 3456889888876542 1 1357999
Q ss_pred EEEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 143 VIAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 143 Ii~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|++..++++.. ....++++++++|+|||++++.+.
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp EEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 99999998554 456889999999999999999764
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.1e-13 Score=107.12 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=75.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.+..+|+++|+|+. +..++++...+. .++.+...|+.+... +..+++||+|
T Consensus 60 ~~~--~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~v~~~~~d~~~~~~-~~~~~~fD~V 132 (236)
T 1zx0_A 60 KGG--RVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVAP-TLPDGHFDGI 132 (236)
T ss_dssp TCE--EEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHGG-GSCTTCEEEE
T ss_pred CCC--eEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC----CCeEEEecCHHHhhc-ccCCCceEEE
Confidence 456 99999999999999998766559999999994 556666544432 346777766544310 2234689999
Q ss_pred EE-cccC----CCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IA-ADVV----YIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~-~~~~----~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++ ...+ .+......+++.+.++|+|||++++..
T Consensus 133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 98 4332 123345577999999999999999875
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=111.46 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=87.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCC-ceEEEEeecCCCcc-cccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNK-SLKTSVLYWNNQDQ-INALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~-~i~~~~~d~~~~~~-~~~~~~~fD 141 (232)
+++ +|||+|||+|.+++.+|+.++.+|+++|+|+ ++..+++|+..|+ +.. ++.+...|+..... ......+||
T Consensus 212 ~~~--~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD 287 (385)
T 2b78_A 212 AGK--TVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYD 287 (385)
T ss_dssp BTC--EEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCC--eEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCcc
Confidence 567 9999999999999999998777999999998 6889999999886 333 57787777543211 111134799
Q ss_pred EEEEcccCCC-----c----ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHH
Q 026858 142 LVIAADVVYI-----E----ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEM 190 (232)
Q Consensus 142 ~Ii~~~~~~~-----~----~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~ 190 (232)
+|++.++.+. . .....++..+.++|+|||.+++....... ....|.+.
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~ 344 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-TVSQFKKQ 344 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CHHHHHHH
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC-CHHHHHHH
Confidence 9999766642 1 23455677888999999999998866653 23444443
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-12 Score=100.81 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=74.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||+|||+|..+..+++. +..+|+++|+++ ++..++.+...+ .++.+...|...........++||
T Consensus 73 ~~~~--~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 73 KRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTSCCEE
T ss_pred CCCC--EEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCcccccccCccEE
Confidence 3567 9999999999999999887 545999999998 455666554433 346777777665221111125799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+.. + ........+++.+.++|+|||.+++..
T Consensus 146 ~v~~~-~-~~~~~~~~~l~~~~~~LkpgG~l~i~~ 178 (230)
T 1fbn_A 146 VIYED-V-AQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp EEEEC-C-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEe-c-CChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99942 1 233345778999999999999999974
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=102.27 Aligned_cols=110 Identities=10% Similarity=0.087 Sum_probs=82.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
++. +|||||||+|..+..++ . +++++|+++. + +.+...|..... ...++||+|+
T Consensus 67 ~~~--~vLDiG~G~G~~~~~l~---~-~v~~~D~s~~----------~-------~~~~~~d~~~~~---~~~~~fD~v~ 120 (215)
T 2zfu_A 67 ASL--VVADFGCGDCRLASSIR---N-PVHCFDLASL----------D-------PRVTVCDMAQVP---LEDESVDVAV 120 (215)
T ss_dssp TTS--CEEEETCTTCHHHHHCC---S-CEEEEESSCS----------S-------TTEEESCTTSCS---CCTTCEEEEE
T ss_pred CCC--eEEEECCcCCHHHHHhh---c-cEEEEeCCCC----------C-------ceEEEeccccCC---CCCCCEeEEE
Confidence 456 89999999999887663 4 8999999984 1 234455544322 2346799999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEec
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
++.++++ .+...+++.+.++|+|||.+++............+.+.+.+ +|.+....
T Consensus 121 ~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 121 FCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp EESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred Eehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe
Confidence 9998874 78899999999999999999998765533345667776664 89887654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-12 Score=107.75 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=99.6
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHh
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
+-.++.-|.+.+..... ..++. +|||||||||.++..+++.++.+|+++|+++ ++....++
T Consensus 66 vsrg~~Kl~~~l~~~~~-------------~~~g~--~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~--- 127 (291)
T 3hp7_A 66 VSRGGLKLEKALAVFNL-------------SVEDM--ITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ--- 127 (291)
T ss_dssp SSTTHHHHHHHHHHTTC-------------CCTTC--EEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---
T ss_pred ccchHHHHHHHHHhcCC-------------Ccccc--EEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---
Confidence 34456667777765544 44677 9999999999999999888877999999998 44442221
Q ss_pred cCCCCCCceE-EEEeecCCCcccccCC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee-----------
Q 026858 112 NKPVLNKSLK-TSVLYWNNQDQINALK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL----------- 178 (232)
Q Consensus 112 ~~~~~~~~i~-~~~~d~~~~~~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~----------- 178 (232)
+ .++. ....++.... ....+ .+||+|++..+++ .+..++..+.++|+|||.+++..+.
T Consensus 128 ~-----~rv~~~~~~ni~~l~-~~~l~~~~fD~v~~d~sf~---sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~ 198 (291)
T 3hp7_A 128 D-----DRVRSMEQYNFRYAE-PVDFTEGLPSFASIDVSFI---SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGK 198 (291)
T ss_dssp C-----TTEEEECSCCGGGCC-GGGCTTCCCSEEEECCSSS---CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-
T ss_pred C-----cccceecccCceecc-hhhCCCCCCCEEEEEeeHh---hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCC
Confidence 1 1111 1111111111 11122 3499999865554 4578999999999999999987221
Q ss_pred ----cCh----hHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEE
Q 026858 179 ----RSP----EAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYI 218 (232)
Q Consensus 179 ----r~~----~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~ 218 (232)
+.+ ...+.+.+.+. .+|.+..+....+...-.+-++-+|.
T Consensus 199 ~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~~gn~e~l~~~ 247 (291)
T 3hp7_A 199 NGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHL 247 (291)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCGGGCCCEEEEE
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCcCHHHHHHh
Confidence 111 12344555555 49999888877665543444544554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=99.97 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=72.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||||..+..+|.. + .++|+++|+++. +..+....+.. .++.+...|...........++
T Consensus 74 l~~g~--~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-----~nv~~i~~Da~~~~~~~~~~~~ 146 (232)
T 3id6_C 74 IRKGT--KVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-----PNIFPLLADARFPQSYKSVVEN 146 (232)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-----TTEEEEECCTTCGGGTTTTCCC
T ss_pred CCCCC--EEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCeEEEEcccccchhhhccccc
Confidence 44777 9999999999999988875 2 459999999984 33333322222 2367777776654322223468
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
||+|++..+. +.....+...+.++|+|||+++++.+
T Consensus 147 ~D~I~~d~a~--~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 147 VDVLYVDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp EEEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred eEEEEecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 9999986433 33444555677779999999999753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=105.86 Aligned_cols=136 Identities=15% Similarity=0.210 Sum_probs=96.4
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
+.+..+.+++.+... .++. +|||+|||+|..++.++.. +..+++++|+|+ ++..+++|...+
T Consensus 93 ~~te~l~~~~l~~~~--------------~~~~--~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~ 156 (276)
T 2b3t_A 93 PDTECLVEQALARLP--------------EQPC--RILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL 156 (276)
T ss_dssp TTHHHHHHHHHHHSC--------------SSCC--EEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcc--------------cCCC--EEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 556777777766542 1445 8999999999999999865 334999999998 577888888776
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc-------------------------ccHHHHHHHHHHhhC
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE-------------------------ESAAQLVRAMEALVA 167 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-------------------------~~~~~~l~~l~~~l~ 167 (232)
+. .++.+...|+.... ..++||+|++++++... .....+++.+.++|+
T Consensus 157 ~~---~~v~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk 229 (276)
T 2b3t_A 157 AI---KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV 229 (276)
T ss_dssp TC---CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred CC---CceEEEEcchhhhc----ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC
Confidence 52 24677777765432 14679999998665432 245778899999999
Q ss_pred CCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 168 DDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 168 pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
|||.+++....... +.+.+.+. .+|.
T Consensus 230 pgG~l~~~~~~~~~---~~~~~~l~~~Gf~ 256 (276)
T 2b3t_A 230 SGGFLLLEHGWQQG---EAVRQAFILAGYH 256 (276)
T ss_dssp EEEEEEEECCSSCH---HHHHHHHHHTTCT
T ss_pred CCCEEEEEECchHH---HHHHHHHHHCCCc
Confidence 99999987644442 34444444 3675
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-12 Score=104.85 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=78.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +++++|+|+ ++..++++...+.. ++.+...|+.... ..++||+|
T Consensus 41 ~~~--~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~----~v~~~~~d~~~~~----~~~~fD~v 109 (252)
T 1wzn_A 41 EVR--RVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL----KIEFLQGDVLEIA----FKNEFDAV 109 (252)
T ss_dssp CCC--EEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC----CCEEEESCGGGCC----CCSCEEEE
T ss_pred CCC--EEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC----ceEEEECChhhcc----cCCCccEE
Confidence 456 999999999999999998887 999999998 56677776655432 3577777665432 23579999
Q ss_pred EEccc-C--CCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADV-V--YIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~-~--~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++... + ....+...+++.+.++|+|||.+++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 97532 2 2345788999999999999999987654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-12 Score=102.35 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=86.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++.. +++|+++. +..++.+ .+.+...+..... ...++||+|
T Consensus 47 ~~~--~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~---~~~~~fD~v 106 (219)
T 1vlm_A 47 PEG--RGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR----------GVFVLKGTAENLP---LKDESFDFA 106 (219)
T ss_dssp CSS--CEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT----------TCEEEECBTTBCC---SCTTCEEEE
T ss_pred CCC--cEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc----------CCEEEEcccccCC---CCCCCeeEE
Confidence 356 9999999999988877653 99999984 4444432 2366666654322 234579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChh---------------------HHHHHHHHHhc-CceEEEec
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE---------------------AHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~---------------------~~~~~~~~~~~-~f~~~~~~ 201 (232)
++..++++..+...+++.+.++|+|||.+++....+... ....+.+.+.+ ||++..+.
T Consensus 107 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 107 LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999999888889999999999999999999986554311 23455566654 89877665
Q ss_pred CC
Q 026858 202 HE 203 (232)
Q Consensus 202 ~~ 203 (232)
..
T Consensus 187 ~~ 188 (219)
T 1vlm_A 187 QT 188 (219)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-12 Score=107.05 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=83.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..+++. +. +++++|++.++..++++..... +..++.+...|+.... ....||+
T Consensus 165 ~~~--~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~D~ 235 (335)
T 2r3s_A 165 EPL--KVLDISASHGLFGIAVAQHNPNA-EIFGVDWASVLEVAKENARIQG--VASRYHTIAGSAFEVD----YGNDYDL 235 (335)
T ss_dssp CCS--EEEEETCTTCHHHHHHHHHCTTC-EEEEEECHHHHHHHHHHHHHHT--CGGGEEEEESCTTTSC----CCSCEEE
T ss_pred CCC--EEEEECCCcCHHHHHHHHHCCCC-eEEEEecHHHHHHHHHHHHhcC--CCcceEEEecccccCC----CCCCCcE
Confidence 445 9999999999999988876 44 9999999965677777766554 3346788888876542 2335999
Q ss_pred EEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 143 VIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 143 Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|++..++++. .....+++.+.++|+|||++++.+..
T Consensus 236 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 273 (335)
T 2r3s_A 236 VLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI 273 (335)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeec
Confidence 9999999866 45689999999999999999998654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=104.93 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=92.8
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||+|||+|..+..+++. +..+++++|+..++..++++..... +..++.+...|+.... +..||+|++..+
T Consensus 172 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----p~~~D~v~~~~v 244 (332)
T 3i53_A 172 HVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTG--LSGRAQVVVGSFFDPL-----PAGAGGYVLSAV 244 (332)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCC-----CCSCSEEEEESC
T ss_pred EEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcC--cCcCeEEecCCCCCCC-----CCCCcEEEEehh
Confidence 9999999999999888875 3338999999446777777666544 4567899998876222 227999999999
Q ss_pred CCCccc--HHHHHHHHHHhhCCCcEEEEEEeecCh-------------------hHHHHHHHHHhc-CceEEEec
Q 026858 149 VYIEES--AAQLVRAMEALVADDGVVLLGYQLRSP-------------------EAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 149 ~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~~-------------------~~~~~~~~~~~~-~f~~~~~~ 201 (232)
+++..+ ...++++++++|+|||++++.+..... .+.+.+.+++.+ ||...++.
T Consensus 245 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 245 LHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 986665 588999999999999999998653321 113445555654 88877765
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=104.59 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=83.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+. +|||||||+|..++.+|+.. ...|+++|+++ ++..+++++..++. .++.+...|..........+++||.
T Consensus 34 ~~~--~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l---~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 34 EAP--VTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL---SNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp CCC--EEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC---SSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCC--eEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC---CcEEEEECCHHHHHHHHcCCCChhe
Confidence 455 99999999999999998773 23899999998 57777777776652 2367776664432110123568999
Q ss_pred EEEcccCCCcccH--------HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc
Q 026858 143 VIAADVVYIEESA--------AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE 193 (232)
Q Consensus 143 Ii~~~~~~~~~~~--------~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~ 193 (232)
|++..+..+.... +.+++.+.++|+|||.+++.+....+ .+...+.+..
T Consensus 109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~--~~~~~~~~~~ 165 (218)
T 3dxy_A 109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPY--AEHMLEVMSS 165 (218)
T ss_dssp EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHH--HHHHHHHHHT
T ss_pred EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHH--HHHHHHHHHh
Confidence 9987433322221 25999999999999999998755432 3344444443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-13 Score=109.78 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=74.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++....+++++|+++. +..++++..... ..+.+...++.... ....+++||.|
T Consensus 60 ~G~--rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~----~~~~~~~~~a~~~~-~~~~~~~FD~i 132 (236)
T 3orh_A 60 KGG--RVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVA-PTLPDGHFDGI 132 (236)
T ss_dssp TCE--EEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHG-GGSCTTCEEEE
T ss_pred CCC--eEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC----CceEEEeehHHhhc-ccccccCCceE
Confidence 667 99999999999999998875448999999994 556665554433 23455555553322 11234679999
Q ss_pred EEcc-----cCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAAD-----VVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~-----~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+... ...+..+.+.+++++.++|||||++.+..
T Consensus 133 ~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred EEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 8532 22355678899999999999999998763
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-12 Score=99.37 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=86.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..++.+|+. +..+++++|+++ ++..+++++..++. .++.+...|+..... ....+.||.
T Consensus 38 ~~~--~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~---~nv~~~~~d~~~l~~-~~~~~~~d~ 111 (213)
T 2fca_A 38 DNP--IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA---QNVKLLNIDADTLTD-VFEPGEVKR 111 (213)
T ss_dssp CCC--EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC---SSEEEECCCGGGHHH-HCCTTSCCE
T ss_pred CCc--eEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC---CCEEEEeCCHHHHHh-hcCcCCcCE
Confidence 345 8999999999999999887 233999999998 57777777776542 346777777654211 012457999
Q ss_pred EEEcccCCCccc--------HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 143 VIAADVVYIEES--------AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 143 Ii~~~~~~~~~~--------~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
|++..+..+... ...+++.+.++|+|||.+++...... ......+.+. .+|.....
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~--~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG--LFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH--HHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCccccc
Confidence 988654322221 36889999999999999999874332 2223334343 36766554
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=97.70 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=76.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +|||+|||+|..+..+++. + ..+|+++|+++ ++..+..++..+ .++.+...|...........++|
T Consensus 72 ~~~~--~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~ 144 (227)
T 1g8a_A 72 KPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCC--EEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCCc
Confidence 3567 9999999999999999876 3 24999999998 455666665443 34688887776533212223579
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|+|++..+ .......++..+.++|+|||.+++...
T Consensus 145 D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 145 DVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99997544 233344559999999999999999754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=104.23 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=80.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~ 142 (232)
++. +|||+|||+|..+..+++.+. +|+++|+++. +..++++ . .++.+...|+..... .. +++||+
T Consensus 48 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~----~~~~~~~~d~~~~~~--~~~~~~fD~ 114 (226)
T 3m33_A 48 PQT--RVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN----A----PHADVYEWNGKGELP--AGLGAPFGL 114 (226)
T ss_dssp TTC--EEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH----C----TTSEEEECCSCSSCC--TTCCCCEEE
T ss_pred CCC--eEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh----C----CCceEEEcchhhccC--CcCCCCEEE
Confidence 556 999999999999999999887 9999999984 5555554 1 235788887743322 22 468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
|+++ .+...+++.+.++|+|||.++....... ...+.+.+. .+|....+
T Consensus 115 v~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 115 IVSR------RGPTSVILRLPELAAPDAHFLYVGPRLN---VPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp EEEE------SCCSGGGGGHHHHEEEEEEEEEEESSSC---CTHHHHHHHHTTCEEEEE
T ss_pred EEeC------CCHHHHHHHHHHHcCCCcEEEEeCCcCC---HHHHHHHHHHCCCeEEEE
Confidence 9987 3456788899999999999993322222 234445444 47766554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-12 Score=108.41 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=97.3
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.++-+|..+.+.-..+ ..+| ..|+ ......++..... +++ +|||+|||||..++.+|+
T Consensus 175 ~~~v~E~g~~f~vd~~~~-~~tG-~f~d-qr~~r~~l~~~~~---------------~g~--~VLDlg~GtG~~sl~~a~ 234 (393)
T 4dmg_A 175 VLEVEEDGLRFPIPLALA-QKTG-YYLD-QRENRRLFEAMVR---------------PGE--RVLDVYSYVGGFALRAAR 234 (393)
T ss_dssp EEEEEETTEEEEEETTTC-CTTS-SCGG-GHHHHHHHHTTCC---------------TTC--EEEEESCTTTHHHHHHHH
T ss_pred cEEEEECCEEEEEechhc-cccC-cCCC-HHHHHHHHHHHhc---------------CCC--eEEEcccchhHHHHHHHH
Confidence 455555666666544433 3333 2233 3334455554332 577 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc---------ccHHH
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE---------ESAAQ 157 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~---------~~~~~ 157 (232)
.|+ .|+++|+|+ ++..+++|+..|+.. . .+...|+.... ....+.||+|++.++.+.. .....
T Consensus 235 ~ga-~V~avDis~~al~~a~~n~~~ng~~--~--~~~~~D~~~~l--~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ 307 (393)
T 4dmg_A 235 KGA-YALAVDKDLEALGVLDQAALRLGLR--V--DIRHGEALPTL--RGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVD 307 (393)
T ss_dssp TTC-EEEEEESCHHHHHHHHHHHHHHTCC--C--EEEESCHHHHH--HTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHH
T ss_pred cCC-eEEEEECCHHHHHHHHHHHHHhCCC--C--cEEEccHHHHH--HHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHH
Confidence 988 599999999 688899999888733 2 23344332211 1113459999997665432 24567
Q ss_pred HHHHHHHhhCCCcEEEEEEeecC
Q 026858 158 LVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 158 ~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++..+.++|+|||.++++.....
T Consensus 308 ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 308 LVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp HHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHHHHHHhcCCCCEEEEEECCCC
Confidence 88888999999999997765554
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-12 Score=101.59 Aligned_cols=123 Identities=8% Similarity=0.064 Sum_probs=91.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|.+++.+++.+ ..+|+++|+++ ++..++.|+..++ +..++.+...|+-.... . ...||+
T Consensus 15 ~g~--~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~--~-~~~~D~ 87 (225)
T 3kr9_A 15 QGA--ILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFE--E-TDQVSV 87 (225)
T ss_dssp TTE--EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCC--G-GGCCCE
T ss_pred CCC--EEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhcc--c-CcCCCE
Confidence 566 99999999999999999885 45899999999 6889999999887 44568888877643321 0 126999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
|+.+.. ....+..++......|+++|++++... .. .....+.+. .+|.+...
T Consensus 88 IviaG~--Gg~~i~~Il~~~~~~L~~~~~lVlq~~-~~---~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 88 ITIAGM--GGRLIARILEEGLGKLANVERLILQPN-NR---EDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp EEEEEE--CHHHHHHHHHHTGGGCTTCCEEEEEES-SC---HHHHHHHHHHTTEEEEEE
T ss_pred EEEcCC--ChHHHHHHHHHHHHHhCCCCEEEEECC-CC---HHHHHHHHHHCCCEEEEE
Confidence 987654 224578888999999999999887654 33 334555444 48887654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=105.35 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.+. +++++|+|+. +..++++.. . .+...|..... ...++||+|
T Consensus 54 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-------~--~~~~~d~~~~~---~~~~~fD~v 118 (260)
T 2avn_A 54 NPC--RVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-------K--NVVEAKAEDLP---FPSGAFEAV 118 (260)
T ss_dssp SCC--EEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-------S--CEEECCTTSCC---SCTTCEEEE
T ss_pred CCC--eEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-------C--CEEECcHHHCC---CCCCCEEEE
Confidence 556 999999999999999998887 9999999984 444444321 1 14444443322 234689999
Q ss_pred EEcccCC-CcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVY-IEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~-~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++..+++ ...+...+++.+.++|+|||.+++....+.
T Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 119 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred EEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 9987654 436689999999999999999999876653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-12 Score=109.96 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=85.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
+++ +|||+|||+|..++.+++.|+.+|+++|+++ ++..++.|+..|+ +..++.+...|+..... ......+||+
T Consensus 217 ~~~--~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~--~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 292 (396)
T 2as0_A 217 PGD--RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAFEEMEKLQKKGEKFDI 292 (396)
T ss_dssp TTC--EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCC--eEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCccceEEECCHHHHHHHHHhhCCCCCE
Confidence 556 9999999999999999998777999999998 6888889998876 32357777776543321 1111457999
Q ss_pred EEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++.++.+.. .....++..+.++|+|||.++++.....
T Consensus 293 Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 293 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 9997665432 3467788889999999999988876554
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-12 Score=99.97 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..++..+. +++++|+++. +..++. +. ..+...|+.... .+..+++||+|
T Consensus 32 ~~~--~vLdiG~G~G~~~~~l~~~~~-~~~~~D~~~~~~~~~~~----~~------~~~~~~d~~~~~-~~~~~~~fD~v 97 (230)
T 3cc8_A 32 EWK--EVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAEQAKE----KL------DHVVLGDIETMD-MPYEEEQFDCV 97 (230)
T ss_dssp TCS--EEEEETCTTSHHHHHHHTTTC-EEEEEESSHHHHHHHHT----TS------SEEEESCTTTCC-CCSCTTCEEEE
T ss_pred CCC--cEEEeCCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHH----hC------CcEEEcchhhcC-CCCCCCccCEE
Confidence 456 999999999999999988875 9999999983 333332 21 144555554321 11224689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus 98 ~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 98 IFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred EECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999988888899999999999999999998754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.1e-12 Score=100.51 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=78.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccC-CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INAL-KP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~-~~ 138 (232)
++. +|||||||+|..+..+++. +. +++++|+++ ++..+++++...+ +..++.+...|...... .... .+
T Consensus 58 ~~~--~vLdiG~G~G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~ 132 (223)
T 3duw_A 58 GAR--NILEIGTLGGYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLALDSLQQIENEKYE 132 (223)
T ss_dssp TCS--EEEEECCTTSHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCC--EEEEecCCccHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcCCC
Confidence 557 9999999999999999887 44 999999998 5677777777665 44567888776543211 1111 15
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+||+|++... ......+++.+.++|+|||.+++...
T Consensus 133 ~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 133 PFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred CcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 7999998643 45678899999999999998887543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=103.09 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=87.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cc--cCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-IN--ALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~--~~~~ 138 (232)
++. +|||||||+|..++.+++. ...+|+++|+++ ++..+++|+..++ +..++.+...|...... .. ...+
T Consensus 58 ~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 58 SPS--LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp CCS--EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHGGGTTTTSCCC
T ss_pred CCC--EEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCHHHHHHHHHHhcCCC
Confidence 556 9999999999999999874 134999999998 5777788877765 33457887777533211 10 0125
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh--cCceEEEec
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA--EVFLIEKVP 201 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~--~~f~~~~~~ 201 (232)
+||+|++............++..+ ++|+|||.+++....... ...|++.+. ..|....++
T Consensus 134 ~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 195 (221)
T 3u81_A 134 TLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG--TPDFLAYVRGSSSFECTHYS 195 (221)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC--CHHHHHHHHHCTTEEEEEEE
T ss_pred ceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc--hHHHHHHHhhCCCceEEEcc
Confidence 799999876555444444566666 999999999886544431 244555554 356655543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-12 Score=105.77 Aligned_cols=110 Identities=11% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCCCcEEEeCccccHHHHHHH----Hh-CCCcE--EEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc--
Q 026858 65 HSTRRRAIELGAGCGAAGMAFY----LL-GLADI--VLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-- 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la----~~-~~~~v--~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-- 134 (232)
++. +|||||||+|.++..++ .. +..++ +++|.|+ ++..++++..... .. ..+.+...+ .......
T Consensus 52 ~~~--~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~-~~-~~v~~~~~~-~~~~~~~~~ 126 (292)
T 2aot_A 52 SEI--KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS-NL-ENVKFAWHK-ETSSEYQSR 126 (292)
T ss_dssp SEE--EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS-SC-TTEEEEEEC-SCHHHHHHH
T ss_pred CCC--eEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc-CC-CcceEEEEe-cchhhhhhh
Confidence 445 99999999998765332 22 22234 9999998 4555555443321 11 223332111 1111111
Q ss_pred ----cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 135 ----ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 135 ----~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
..+++||+|+++.++++..++..+++.++++|||||++++.....
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 124689999999999999999999999999999999999986543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=115.51 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=81.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+++ +|||||||+|.+++.+++.+..+|+++|+|+++..+++++..++ +..++.+...|+.... ..++||+
T Consensus 156 ~~~~~--~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~g--l~~~v~~~~~d~~~~~----~~~~fD~ 227 (480)
T 3b3j_A 156 DFKDK--IVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNN--LTDRIVVIPGKVEEVS----LPEQVDI 227 (480)
T ss_dssp GTTTC--EEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTT--CTTTEEEEESCTTTCC----CSSCEEE
T ss_pred hcCCC--EEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcC--CCCcEEEEECchhhCc----cCCCeEE
Confidence 44667 99999999999999999887669999999996667777777765 4456888888876532 2357999
Q ss_pred EEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIAADVVYIE--ESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i 174 (232)
|++..+.|+. +.....+..+.++|+|||.+++
T Consensus 228 Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 228 IISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 9997665532 4455667788899999999986
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=105.30 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=81.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.. ..+++++|+..++..++++...+. +..++.+...|+.... +..||+|
T Consensus 182 ~~~--~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~D~v 252 (374)
T 1qzz_A 182 AVR--HVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAG--LADRVTVAEGDFFKPL-----PVTADVV 252 (374)
T ss_dssp TCC--EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT--CTTTEEEEECCTTSCC-----SCCEEEE
T ss_pred CCC--EEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcC--CCCceEEEeCCCCCcC-----CCCCCEE
Confidence 455 99999999999999988762 239999999336777777776654 4456888888875422 2349999
Q ss_pred EEcccCCCcccH--HHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIEESA--AQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~~--~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++..++++..+. ..+++.+.++|+|||++++.+.
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999766554 4899999999999999998775
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=6.7e-12 Score=103.81 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=88.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +|||+|||+|..+..+++. +..+++++|+++ ++..++++...+ + ..++.+...|+.... ..+
T Consensus 108 ~~~~~--~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~----~~~ 178 (275)
T 1yb2_A 108 LRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIADFI----SDQ 178 (275)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTTCC----CSC
T ss_pred CCCcC--EEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhccC----cCC
Confidence 34667 9999999999999999876 234999999998 577777777665 4 134677777765522 235
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEEEe
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIEKV 200 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~~~ 200 (232)
+||+|++. ..+...+++.+.++|+|||++++...... ....+.+.+.+ +|...+.
T Consensus 179 ~fD~Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 179 MYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp CEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEE
T ss_pred CccEEEEc-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEE
Confidence 79999983 23446789999999999999999885442 34555565654 7765444
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.7e-12 Score=100.10 Aligned_cols=124 Identities=9% Similarity=0.041 Sum_probs=92.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|.+++.+++.+ +.+|+++|+++ ++..++.|+..++ +..++.+...|...... ....||+
T Consensus 21 ~g~--~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~---~~~~~D~ 93 (230)
T 3lec_A 21 KGA--RLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFE---EADNIDT 93 (230)
T ss_dssp TTE--EEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCC---GGGCCCE
T ss_pred CCC--EEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccc---cccccCE
Confidence 566 99999999999999999985 45899999999 5889999999887 55678888887654431 1126999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
|+.+..-. ..+..++......|+++|++++.... . ...+.+.+. .+|.+....
T Consensus 94 IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~~-~---~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 94 ITICGMGG--RLIADILNNDIDKLQHVKTLVLQPNN-R---EDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp EEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEESS-C---HHHHHHHHHHTTEEEEEEE
T ss_pred EEEeCCch--HHHHHHHHHHHHHhCcCCEEEEECCC-C---hHHHHHHHHHCCCEEEEEE
Confidence 88755432 56778888888899999988877642 2 345555555 488876653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=104.93 Aligned_cols=120 Identities=14% Similarity=0.218 Sum_probs=88.3
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
+.+..|.+++.+... ..++. +|||+|||+|.+++.+++. +. +++++|+|+ ++..++.|+..+
T Consensus 106 ~~te~lv~~~l~~~~-------------~~~~~--~vLDlG~GsG~~~~~la~~~~~-~v~~vDis~~al~~A~~n~~~~ 169 (284)
T 1nv8_A 106 PETEELVELALELIR-------------KYGIK--TVADIGTGSGAIGVSVAKFSDA-IVFATDVSSKAVEIARKNAERH 169 (284)
T ss_dssp TTHHHHHHHHHHHHH-------------HHTCC--EEEEESCTTSHHHHHHHHHSSC-EEEEEESCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhc-------------ccCCC--EEEEEeCchhHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHc
Confidence 456667776665432 22456 8999999999999999887 55 999999998 678888888877
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCc---cEEEEcccCCCccc-------------------HHHHHHHHH-HhhCCC
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPF---DLVIAADVVYIEES-------------------AAQLVRAME-ALVADD 169 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~f---D~Ii~~~~~~~~~~-------------------~~~~l~~l~-~~l~pg 169 (232)
+ +..++.+...|+.... .++| |+|+++++...... -..+++.+. +.++||
T Consensus 170 ~--l~~~v~~~~~D~~~~~-----~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg 242 (284)
T 1nv8_A 170 G--VSDRFFVRKGEFLEPF-----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG 242 (284)
T ss_dssp T--CTTSEEEEESSTTGGG-----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred C--CCCceEEEECcchhhc-----ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence 5 4446888888876532 2468 99999765432110 116789999 999999
Q ss_pred cEEEEEEe
Q 026858 170 GVVLLGYQ 177 (232)
Q Consensus 170 G~l~i~~~ 177 (232)
|.+++...
T Consensus 243 G~l~~e~~ 250 (284)
T 1nv8_A 243 KIVLMEIG 250 (284)
T ss_dssp CEEEEECC
T ss_pred CEEEEEEC
Confidence 99998543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=105.95 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=75.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh----CCCcEEEEcchh-HHHHHHHHHHhc---CCCCCCc-----------------
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL----GLADIVLTDISP-VMPALKHNLKRN---KPVLNKS----------------- 119 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~-~~~~~~~n~~~~---~~~~~~~----------------- 119 (232)
++. +|||+|||+|.+++.+++. +. +|+++|+|+ ++..++.|+..+ . +..+
T Consensus 51 ~~~--~vLD~gcGsG~~~~~la~~~~~~~~-~v~gvDis~~~l~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 125 (250)
T 1o9g_A 51 GPV--TLWDPCCGSGYLLTVLGLLHRRSLR-QVIASDVDPAPLELAAKNLALLSPAG--LTARELERREQSERFGKPSYL 125 (250)
T ss_dssp SCE--EEEETTCTTSHHHHHHHHHTGGGEE-EEEEEESCHHHHHHHHHHHHTTSHHH--HHHHHHHHHHHHHHHCCHHHH
T ss_pred CCC--eEEECCCCCCHHHHHHHHHhccCCC-eEEEEECCHHHHHHHHHHHHHhhhcc--ccccchhhhhhhhhcccccch
Confidence 445 9999999999999988875 44 899999998 566777666543 1 1001
Q ss_pred --------eE-------------EEEeecCCCcccc--cCCCCccEEEEcccCCCc---------ccHHHHHHHHHHhhC
Q 026858 120 --------LK-------------TSVLYWNNQDQIN--ALKPPFDLVIAADVVYIE---------ESAAQLVRAMEALVA 167 (232)
Q Consensus 120 --------i~-------------~~~~d~~~~~~~~--~~~~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~ 167 (232)
+. +...|+....... ....+||+|+++.++... .....+++.+.++|+
T Consensus 126 ~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 205 (250)
T 1o9g_A 126 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 205 (250)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC
Confidence 33 6666655432100 012379999998766432 335689999999999
Q ss_pred CCcEEEEEEee
Q 026858 168 DDGVVLLGYQL 178 (232)
Q Consensus 168 pgG~l~i~~~~ 178 (232)
|||+++++...
T Consensus 206 pgG~l~~~~~~ 216 (250)
T 1o9g_A 206 AHAVIAVTDRS 216 (250)
T ss_dssp TTCEEEEEESS
T ss_pred CCcEEEEeCcc
Confidence 99999985543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-14 Score=113.11 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=81.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.+. +|+++|+|+ ++..++.++..++ +..++.+...|+.... ..++||+|
T Consensus 78 ~~~--~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~----~~~~~D~v 148 (241)
T 3gdh_A 78 KCD--VVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLLLA----SFLKADVV 148 (241)
T ss_dssp CCS--EEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHG----GGCCCSEE
T ss_pred CCC--EEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHHhc----ccCCCCEE
Confidence 567 999999999999999999885 999999998 5777888877665 3245788887765433 24689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+++.++++.......+..+.++|+|||.+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 149 FLSPPWGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp EECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred EECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 99988887766666777889999999985543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-11 Score=101.60 Aligned_cols=101 Identities=14% Similarity=0.226 Sum_probs=77.9
Q ss_pred ccCCCCCcEEEeCccccH-HHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGA-AGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~-~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|. .++.+|+. ++ +|+++|+++ ++..++++....+ + .++.+...|.... + +++
T Consensus 120 l~~g~--rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~g--l-~~v~~v~gDa~~l---~--d~~ 188 (298)
T 3fpf_A 120 FRRGE--RAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLG--V-DGVNVITGDETVI---D--GLE 188 (298)
T ss_dssp CCTTC--EEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHT--C-CSEEEEESCGGGG---G--GCC
T ss_pred CCCcC--EEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcC--C-CCeEEEECchhhC---C--CCC
Confidence 34677 99999999975 45666764 66 999999999 5667777766654 3 5678887766432 1 468
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
||+|++... ..+...+++.+.++|+|||++++...
T Consensus 189 FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 189 FDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 999998654 46788999999999999999998763
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-11 Score=93.99 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=82.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----cCC--
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----ALK-- 137 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~-- 137 (232)
.++. +|||||||+|..+..+++.+. +|+++|++++. . ...+.+...|+....... ...
T Consensus 24 ~~g~--~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~~~---------~----~~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 24 RKGD--AVIEIGSSPGGWTQVLNSLAR-KIISIDLQEME---------E----IAGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp CTTC--EEEEESCTTCHHHHHHTTTCS-EEEEEESSCCC---------C----CTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred CCCC--EEEEEeecCCHHHHHHHHcCC-cEEEEeccccc---------c----CCCeEEEEccccCHHHHHHHHHHhhcc
Confidence 3667 999999999999999998865 99999999831 1 124678888876643211 011
Q ss_pred --CCccEEEEcccCCCc-----------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 138 --PPFDLVIAADVVYIE-----------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 138 --~~fD~Ii~~~~~~~~-----------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
++||+|++....... .....++..+.++|+|||.+++...... ....+...+...|.-..+
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~--~~~~~~~~l~~~F~~v~~ 161 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD--MTNDFIAIWRKNFSSYKI 161 (191)
T ss_dssp TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--HHHHHHHHHGGGEEEEEE
T ss_pred cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC--CHHHHHHHHHHhcCEEEE
Confidence 489999986543211 1235678888999999999997654332 345677777777764444
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-11 Score=100.66 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=89.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.+++.+|+.|+.+|+++|+|+ ++..+++|++.|+ +.+++.+...|..... ..+.||.|
T Consensus 125 ~g~--~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~--v~~~v~~~~~D~~~~~----~~~~~D~V 196 (278)
T 3k6r_A 125 PDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFP----GENIADRI 196 (278)
T ss_dssp TTC--EEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCC----CCSCEEEE
T ss_pred CCC--EEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCcHHHhc----cccCCCEE
Confidence 677 9999999999999999999866999999999 6889999999998 5567888777765433 24579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC----hhHHHHHHHHHh-cCceEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~----~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+++.+.+.. .++..+.++|++||.+.+-..... ....+.+.+... .++.++.+
T Consensus 197 i~~~p~~~~----~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 197 LMGYVVRTH----EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp EECCCSSGG----GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCcHH----HHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 998765543 345566788999999866432221 122344444444 36665543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.6e-12 Score=101.37 Aligned_cols=123 Identities=15% Similarity=0.103 Sum_probs=88.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|.++..+++. + ..+++++|+++ ++..++++...++ +..++.+...|+.... ..++
T Consensus 91 ~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~ 162 (255)
T 3mb5_A 91 ISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIYEGI----EEEN 162 (255)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGGGCC----CCCS
T ss_pred CCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchhhcc----CCCC
Confidence 34667 9999999999999999887 3 34999999998 5777788877665 3345788877765332 2457
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-C--ceEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-V--FLIEKV 200 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~--f~~~~~ 200 (232)
||+|++.. .+...+++.+.++|+|||++++...... ....+.+.+.+ + |.....
T Consensus 163 ~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 163 VDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTPCSN--QVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEEEEECS-----SCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHTGGGBSCCEE
T ss_pred cCEEEECC-----CCHHHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCccccEE
Confidence 99999843 3446689999999999999998764332 23445555543 5 754333
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=106.98 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=81.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCC----CCCCceEEEEeecCCCc---ccccC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKP----VLNKSLKTSVLYWNNQD---QINAL 136 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~----~~~~~i~~~~~d~~~~~---~~~~~ 136 (232)
++. +|||||||+|..+..+++.+..+++++|+|+ ++..++.+...... ....++.+...|+.... .+...
T Consensus 34 ~~~--~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDI--TVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CC--EEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCC--EEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 456 9999999999999888876555999999998 45566655443210 01234677787776543 11112
Q ss_pred CCCccEEEEcccCCCc----ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 137 KPPFDLVIAADVVYIE----ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.++||+|+++.++++. .+...+++.+.++|+|||.+++.....
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 3489999999988764 456799999999999999999987543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=102.84 Aligned_cols=103 Identities=13% Similarity=0.212 Sum_probs=79.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|..++.+++. ...+|+++|+++ ++..++++..... +..++.+...|....... ...++||+
T Consensus 71 ~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~-~~~~~fD~ 145 (232)
T 3ntv_A 71 NVK--NILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGNALEQFEN-VNDKVYDM 145 (232)
T ss_dssp TCC--EEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCHHH-HTTSCEEE
T ss_pred CCC--EEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHh-hccCCccE
Confidence 556 9999999999999999884 234999999998 5777777777665 345678888776543210 12468999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|++.. .......+++.+.++|+|||.+++.
T Consensus 146 V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 146 IFIDA---AKAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp EEEET---TSSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEcC---cHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99764 3456788999999999999999883
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-12 Score=109.74 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=77.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHH-------HHHHHhcCCCCCCceEEEEee-cCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPAL-------KHNLKRNKPVLNKSLKTSVLY-WNNQDQ 132 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~-------~~n~~~~~~~~~~~i~~~~~d-~~~~~~ 132 (232)
..++. +|||||||+|.+++.+|+. ++.+|+++|+++. +..+ +.++...+.. ..++.+...+ +.....
T Consensus 240 l~~g~--~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~gD~~~~~~~ 316 (433)
T 1u2z_A 240 LKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSLKKSFVDNNR 316 (433)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEESSCSTTCHH
T ss_pred CCCCC--EEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEEcCccccccc
Confidence 34667 9999999999999999886 6658999999984 4555 5555544311 1346665542 222111
Q ss_pred cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 133 INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+....+.||+|+++..++ ..+...+++.+.++|+|||++++....
T Consensus 317 ~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 317 VAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp HHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred cccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 111135799999876664 467788899999999999999987543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=113.85 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=88.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC--cccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ--DQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~ 139 (232)
..++. +|||||||+|..+..++..+. +++++|+|+. +..++++ . . ......+... ...+..+++
T Consensus 105 ~~~~~--~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~--~----~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 105 TGPDP--FIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----G--I----RVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp CSSSC--EEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----T--C----CEECSCCSHHHHHHHHHHHCC
T ss_pred CCCCC--EEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----C--C----CcceeeechhhHhhcccCCCC
Confidence 34567 999999999999999998888 9999999984 3333332 1 1 1111111100 111122468
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC-----------------hhHHHHHHHHHhc-CceEEEec
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS-----------------PEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~-----------------~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
||+|++..++++..+...+++.++++|+|||++++..+... ......+.+.+.+ +|++..+.
T Consensus 172 fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~ 251 (416)
T 4e2x_A 172 ANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQ 251 (416)
T ss_dssp EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEE
Confidence 99999999999989999999999999999999999764310 1123456666654 89887765
Q ss_pred C
Q 026858 202 H 202 (232)
Q Consensus 202 ~ 202 (232)
.
T Consensus 252 ~ 252 (416)
T 4e2x_A 252 R 252 (416)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=1e-11 Score=99.61 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=75.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|..+..++..+. +++++|+++ ++..++.+...+. ++.+...|...... ..++||
T Consensus 68 ~~~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~-----~v~~~~~d~~~~~~---~~~~fD 136 (231)
T 1vbf_A 68 LHKGQ--KVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYYN-----NIKLILGDGTLGYE---EEKPYD 136 (231)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTCS-----SEEEEESCGGGCCG---GGCCEE
T ss_pred CCCCC--EEEEEcCCCCHHHHHHHHHcC-EEEEEeCCHHHHHHHHHHHhhcC-----CeEEEECCcccccc---cCCCcc
Confidence 44667 999999999999999998885 999999998 4556666554432 46777776654221 246799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|++..++++.. ..+.++|+|||++++.....
T Consensus 137 ~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 137 RVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp EEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred EEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 999998887543 46889999999999987544
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=100.62 Aligned_cols=123 Identities=10% Similarity=0.051 Sum_probs=90.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||||||+|.+++.+++.+ +.+|+++|+++ ++..+++|+..++ +..++.+...|...... ....||+
T Consensus 21 ~g~--~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~---~~~~~D~ 93 (244)
T 3gnl_A 21 KNE--RIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIE---KKDAIDT 93 (244)
T ss_dssp SSE--EEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCC---GGGCCCE
T ss_pred CCC--EEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccC---ccccccE
Confidence 567 99999999999999999985 45899999999 5889999999887 45568888877544331 1125999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
|+++..- ...+..++......|++++++++.... . ...+.+.+. .+|.+...
T Consensus 94 IviagmG--g~lI~~IL~~~~~~L~~~~~lIlq~~~-~---~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 94 IVIAGMG--GTLIRTILEEGAAKLAGVTKLILQPNI-A---AWQLREWSEQNNWLITSE 146 (244)
T ss_dssp EEEEEEC--HHHHHHHHHHTGGGGTTCCEEEEEESS-C---HHHHHHHHHHHTEEEEEE
T ss_pred EEEeCCc--hHHHHHHHHHHHHHhCCCCEEEEEcCC-C---hHHHHHHHHHCCCEEEEE
Confidence 9875432 246778888888999999998887643 3 334555554 47887443
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-12 Score=102.44 Aligned_cols=106 Identities=11% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cc--cCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-IN--ALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~--~~~~ 138 (232)
++. +|||||||+|..++.+++. + ..+|+++|+++ ++..++++...++ +..++.+...|...... .. ...+
T Consensus 64 ~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 64 QAK--KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp TCS--EEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHTTTCTT
T ss_pred CCC--EEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCHHHHHHHhhhccCCC
Confidence 556 9999999999999999986 2 34999999998 5777777777665 44557887776533211 10 0116
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+||+|++.. .......+++.+.++|+|||.+++...
T Consensus 140 ~fD~v~~~~---~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 140 QYDLIYIDA---DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp CEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CccEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 899999754 345678899999999999999998643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-12 Score=99.83 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=75.1
Q ss_pred cEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCC-CceEEEEeecCCCcccccC-CCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLN-KSLKTSVLYWNNQDQINAL-KPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~-~~i~~~~~d~~~~~~~~~~-~~~fD~Ii 144 (232)
+|||||||+|..++.+++. + ..+++++|+++ ++..+++++...+ +. .++.+...|..... +.. .++||+|+
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~~gda~~~l--~~~~~~~fD~V~ 134 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFLLSRPLDVM--SRLANDSYQLVF 134 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHG--GGSCTTCEEEEE
T ss_pred CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEEEcCHHHHH--HHhcCCCcCeEE
Confidence 8999999999999999875 2 34999999998 5677788877765 33 46777776543321 112 46899999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+... ......+++.+.++|+|||.+++.
T Consensus 135 ~d~~---~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 135 GQVS---PMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp ECCC---TTTHHHHHHHHHHHEEEEEEEEET
T ss_pred EcCc---HHHHHHHHHHHHHHcCCCcEEEEe
Confidence 8543 346677999999999999999984
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-11 Score=111.49 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=81.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCC--CcEEEEcchh-HHHHHHHHHHhcC---CCCCCceEEEEeecCCCcccccC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGL--ADIVLTDISP-VMPALKHNLKRNK---PVLNKSLKTSVLYWNNQDQINAL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~--~~v~~~D~s~-~~~~~~~n~~~~~---~~~~~~i~~~~~d~~~~~~~~~~ 136 (232)
..++. +|||||||+|.++..+++.+. .+|+++|+++ ++..+++++.... ..-..++.+...|+.... ..
T Consensus 719 ~~~g~--rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp---~~ 793 (950)
T 3htx_A 719 ESSAS--TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD---SR 793 (950)
T ss_dssp HSCCS--EEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC---TT
T ss_pred ccCCC--EEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC---cc
Confidence 34667 999999999999999998861 3999999998 4556655443221 001235777777765543 23
Q ss_pred CCCccEEEEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 137 KPPFDLVIAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.++||+|++..++++..+ ...+++.+.++|+|| .+++..+++
T Consensus 794 d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 794 LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp SCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred cCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 568999999999987665 346899999999999 777776544
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=99.72 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+. +++++|+|+. +..++++. .++.+...|+.... ..++||+|
T Consensus 40 ~~~--~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~~----~~~~~D~v 104 (239)
T 3bxo_A 40 EAS--SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL--------PDATLHQGDMRDFR----LGRKFSAV 104 (239)
T ss_dssp TCC--EEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC--------TTCEEEECCTTTCC----CSSCEEEE
T ss_pred CCC--eEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC--------CCCEEEECCHHHcc----cCCCCcEE
Confidence 456 999999999999999998876 9999999984 44444331 12467777665433 24689999
Q ss_pred EEc-ccCCCc---ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAA-DVVYIE---ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~-~~~~~~---~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++. +++++. .+...+++.+.++|+|||.+++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 105 VSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred EEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 964 466544 567899999999999999999863
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-12 Score=100.88 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=79.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.++. +|||+|||+|..+..+++. +..+|+++|+++ ++..++++....+ ...++.+...|...........++||
T Consensus 53 ~~~~--~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 53 AAPA--RILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALG--LESRIELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp HCCS--EEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred cCCC--EEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECCHHHHHHhcccCCCcc
Confidence 3567 9999999999999999887 234999999998 4677777776655 33457777776654321110136799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++..+. .....+++.+.++|+|||.+++..
T Consensus 129 ~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 99987654 367889999999999999999863
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.9e-11 Score=102.12 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=81.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.. ..+++++|+..++..++++...+. +..++.+...|+.... +..||+|
T Consensus 183 ~~~--~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-----~~~~D~v 253 (360)
T 1tw3_A 183 NVR--HVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEG--LSDRVDVVEGDFFEPL-----PRKADAI 253 (360)
T ss_dssp TCS--EEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTT--CTTTEEEEECCTTSCC-----SSCEEEE
T ss_pred cCc--EEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcC--CCCceEEEeCCCCCCC-----CCCccEE
Confidence 456 99999999999999888763 238999999446777777776654 4456888888875422 2359999
Q ss_pred EEcccCCCcccH--HHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIEESA--AQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~~~~--~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++++..+. ..+++.+.++|+|||++++.+..
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 999999765544 58999999999999999998754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=97.55 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=75.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC-C-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG-L-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~-~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|..+..+++.. . .+++++|+++ ++..++++..... . ..+.+...|...... ..++
T Consensus 75 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~~---~~~~ 146 (215)
T 2yxe_A 75 LKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG--Y-DNVIVIVGDGTLGYE---PLAP 146 (215)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT--C-TTEEEEESCGGGCCG---GGCC
T ss_pred CCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCeEEEECCcccCCC---CCCC
Confidence 44667 99999999999999988774 1 3999999998 4666666665543 1 236777766532221 1357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
||+|++..++++.. ..+.++|+|||++++....
T Consensus 147 fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 147 YDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp EEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred eeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 99999998887543 4789999999999998743
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=105.53 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=88.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++. +..+++++|+++++. +.+... .....++.+...|+... .+ +||+|
T Consensus 184 ~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~--~~~~~~v~~~~~d~~~~-----~p-~~D~v 251 (348)
T 3lst_A 184 ATG--TVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDA--PDVAGRWKVVEGDFLRE-----VP-HADVH 251 (348)
T ss_dssp SSE--EEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCC--GGGTTSEEEEECCTTTC-----CC-CCSEE
T ss_pred CCc--eEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccc--cCCCCCeEEEecCCCCC-----CC-CCcEE
Confidence 456 9999999999999988876 233899999976433 111111 12345688888887522 12 89999
Q ss_pred EEcccCCCcccH--HHHHHHHHHhhCCCcEEEEEEeecCh----------------------hHHHHHHHHHhc-CceEE
Q 026858 144 IAADVVYIEESA--AQLVRAMEALVADDGVVLLGYQLRSP----------------------EAHKLFWEMCAE-VFLIE 198 (232)
Q Consensus 144 i~~~~~~~~~~~--~~~l~~l~~~l~pgG~l~i~~~~r~~----------------------~~~~~~~~~~~~-~f~~~ 198 (232)
++..++++..+. ..++++++++|+|||++++.+..... .+.+.+.+++.+ ||...
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 331 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLD 331 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEE
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceE
Confidence 999999877665 69999999999999999997642211 123445556654 88877
Q ss_pred EecC
Q 026858 199 KVPH 202 (232)
Q Consensus 199 ~~~~ 202 (232)
++..
T Consensus 332 ~~~~ 335 (348)
T 3lst_A 332 RVVG 335 (348)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-11 Score=95.32 Aligned_cols=117 Identities=14% Similarity=0.138 Sum_probs=83.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||+|||+|..+..+++.+. +++++|+++ ++..++++...+. +..++.+...|+..... ..+.||+
T Consensus 90 ~~~~--~vldiG~G~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~---~~~~~D~ 161 (248)
T 2yvl_A 90 NKEK--RVLEFGTGSGALLAVLSEVAG-EVWTFEAVEEFYKTAQKNLKKFN--LGKNVKFFNVDFKDAEV---PEGIFHA 161 (248)
T ss_dssp CTTC--EEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHHHHTT--CCTTEEEECSCTTTSCC---CTTCBSE
T ss_pred CCCC--EEEEeCCCccHHHHHHHHhCC-EEEEEecCHHHHHHHHHHHHHcC--CCCcEEEEEcChhhccc---CCCcccE
Confidence 3667 999999999999999988854 999999998 5677777776554 33456777766654320 1357999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF 195 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f 195 (232)
|++.. .+...+++.+.++|+|||++++...... ....+.+.+.+.|
T Consensus 162 v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~f 207 (248)
T 2yvl_A 162 AFVDV-----REPWHYLEKVHKSLMEGAPVGFLLPTAN--QVIKLLESIENYF 207 (248)
T ss_dssp EEECS-----SCGGGGHHHHHHHBCTTCEEEEEESSHH--HHHHHHHHSTTTE
T ss_pred EEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHhhC
Confidence 99843 2445788999999999999999885432 2344555554334
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=103.51 Aligned_cols=106 Identities=14% Similarity=0.116 Sum_probs=83.5
Q ss_pred CCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 66 STRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 66 ~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+. +|||||||+|..+..+++. +..+++++|++.++..++++..... ...++.+...|+..... ...+.||+|+
T Consensus 180 ~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~~~D~v~ 253 (352)
T 3mcz_A 180 AR--TVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHD--LGGRVEFFEKNLLDARN--FEGGAADVVM 253 (352)
T ss_dssp CC--EEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGG--GTTCCEEEEE
T ss_pred CC--EEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcC--CCCceEEEeCCcccCcc--cCCCCccEEE
Confidence 56 9999999999999988876 3349999999657777777766554 44568898888765431 1235699999
Q ss_pred EcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 145 AADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 145 ~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+..++++.. ....++++++++|+|||++++.+.
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLILTM 288 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999998655 458999999999999999999864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-11 Score=98.47 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=86.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +|||+|||+|..+..+++. + ..+++++|+++ ++..++++...+ + ..++.+...|+.... ...+
T Consensus 94 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~---~~~~ 165 (258)
T 2pwy_A 94 LAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEAE---LEEA 165 (258)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGCC---CCTT
T ss_pred CCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhcC---CCCC
Confidence 34667 9999999999999999887 3 34999999998 567777777665 3 234677777765431 1235
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~ 198 (232)
+||+|++.. .+...+++.+.++|+|||.+++..... .....+.+.+. .+|...
T Consensus 166 ~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 166 AYDGVALDL-----MEPWKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp CEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEE
T ss_pred CcCEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceE
Confidence 799999842 344578999999999999999987544 22344555554 367543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-10 Score=90.35 Aligned_cols=119 Identities=10% Similarity=0.039 Sum_probs=78.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C--CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc---------
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G--LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--------- 132 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~--~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--------- 132 (232)
++. +|||||||+|..+..+++. + ..+|+++|++++. . ...+.+...|+.....
T Consensus 22 ~~~--~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~----~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 22 KNK--IILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P----IPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp TTE--EEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C----CTTCEEEECCTTTTSSCCC------
T ss_pred CCC--EEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C----CCCceEEEccccchhhhhhcccccc
Confidence 566 9999999999999999876 3 3499999999831 0 1234666666654320
Q ss_pred ------------c-ccCCCCccEEEEcccCCCc----ccH-------HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHH
Q 026858 133 ------------I-NALKPPFDLVIAADVVYIE----ESA-------AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFW 188 (232)
Q Consensus 133 ------------~-~~~~~~fD~Ii~~~~~~~~----~~~-------~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~ 188 (232)
. ....++||+|++..+++.. .+. ..+++.+.++|+|||.+++...... ....+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~l~ 164 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS--QTNNLK 164 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST--THHHHH
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC--CHHHHH
Confidence 0 0123579999997665542 111 2478889999999999998654332 234566
Q ss_pred HHHhcCceEEEe
Q 026858 189 EMCAEVFLIEKV 200 (232)
Q Consensus 189 ~~~~~~f~~~~~ 200 (232)
..+...|....+
T Consensus 165 ~~l~~~f~~v~~ 176 (201)
T 2plw_A 165 TYLKGMFQLVHT 176 (201)
T ss_dssp HHHHTTEEEEEE
T ss_pred HHHHHHHheEEE
Confidence 666666654443
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-11 Score=103.38 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=82.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
+++ +|||+|||+|..++.+++. +.+|+++|+++ ++..++.|+..|+.. . +.+...|...... ......+||+
T Consensus 209 ~~~--~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~--~-~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGE--RALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG--N-VRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEE--EEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT--T-EEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCC--eEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC--C-ceEEECCHHHHHHHHHhcCCCeeE
Confidence 446 8999999999999999988 45999999998 688889999888632 2 6777766543221 1111457999
Q ss_pred EEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 143 VIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 143 Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
|++.++.+.. .....++..+.++|+|||.++++.....
T Consensus 283 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 283 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 9987665432 3457788899999999999999876554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-11 Score=100.94 Aligned_cols=104 Identities=13% Similarity=0.213 Sum_probs=81.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++. +..+++++|+..++..++++..... +..++.+...|+..... ..+|+|
T Consensus 190 ~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~-----~~~D~v 260 (359)
T 1x19_A 190 GVK--KMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG--VADRMRGIAVDIYKESY-----PEADAV 260 (359)
T ss_dssp TCC--EEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTT--CTTTEEEEECCTTTSCC-----CCCSEE
T ss_pred CCC--EEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcC--CCCCEEEEeCccccCCC-----CCCCEE
Confidence 455 9999999999999998876 2239999999336777777776654 44568888888765421 234999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++..++++..+ ...+++++.++|+|||++++.+.
T Consensus 261 ~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 261 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred EEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 99999986655 88999999999999999988763
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9.7e-12 Score=107.60 Aligned_cols=113 Identities=5% Similarity=0.008 Sum_probs=80.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHH-------hcCCCCCCceEEEEeecCCCccc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLK-------RNKPVLNKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~-------~~~~~~~~~i~~~~~d~~~~~~~ 133 (232)
..++. +|||||||+|.+++.+|.. ++.+++|+|+++ ++..++.+.+ .++. ...++.+...|+.+...
T Consensus 171 l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-~~~rVefi~GD~~~lp~- 246 (438)
T 3uwp_A 171 MTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLERGDFLSEEW- 246 (438)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB-CCCEEEEEECCTTSHHH-
T ss_pred CCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEEEECcccCCcc-
Confidence 34677 9999999999999998865 775699999998 4455544432 2221 12468888888765431
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
...-..||+|+++.+++ ..+....+..+.+.|+|||+|++......
T Consensus 247 ~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 247 RERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp HHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred ccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 11013699999876654 56778888899999999999998765443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=102.84 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=76.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCC--CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGL--ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~--~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|.++..+++.+. .+|+++|+++ ++..++++...++ + .++.+...|...... ..++
T Consensus 73 ~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g--~-~~v~~~~~d~~~~~~---~~~~ 144 (317)
T 1dl5_A 73 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG--I-ENVIFVCGDGYYGVP---EFSP 144 (317)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT--C-CSEEEEESCGGGCCG---GGCC
T ss_pred CCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC--C-CCeEEEECChhhccc---cCCC
Confidence 44677 999999999999999988743 3599999998 4667777776654 2 236777777654321 2367
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
||+|++..++.+.. +.+.++|+|||++++...
T Consensus 145 fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 145 YDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp EEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred eEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 99999998887544 578899999999999753
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.4e-12 Score=102.21 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=89.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---cCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---ALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~~ 138 (232)
+++ +|||||||+|..++.+|+. + ..+|+++|+++ ++..+++++...+ +..++.+...|........ +..+
T Consensus 60 ~~~--~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~~~~~~~~~ 135 (242)
T 3r3h_A 60 RAK--KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPALDTLHSLLNEGGEH 135 (242)
T ss_dssp TCS--EEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred CcC--EEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHhhccCCC
Confidence 556 9999999999999999875 2 34999999998 4667777777665 4456788877653321100 0146
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC------------hhHHHHHHHHHhc--CceEEEe
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS------------PEAHKLFWEMCAE--VFLIEKV 200 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~------------~~~~~~~~~~~~~--~f~~~~~ 200 (232)
+||+|++... ......+++.+.++|+|||.+++...... ......|.+.+.. .|...-+
T Consensus 136 ~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (242)
T 3r3h_A 136 QFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL 208 (242)
T ss_dssp CEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred CEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE
Confidence 8999998643 45678899999999999999998543221 1124556666653 5665544
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-11 Score=98.58 Aligned_cols=123 Identities=12% Similarity=0.028 Sum_probs=87.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +|||+|||+|.+++.+++. + ..+++++|+++ ++..+++|...+. +..++.+...|+.... ..+.|
T Consensus 111 ~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~ 182 (277)
T 1o54_A 111 KEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEGF----DEKDV 182 (277)
T ss_dssp CTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGCC----SCCSE
T ss_pred CCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHcc----cCCcc
Confidence 4567 9999999999999999877 3 35999999998 5777777776654 2235677776664431 23579
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
|+|++.. .....+++.+.++|+|||.+++...... ....+.+.+. .+|...+..
T Consensus 183 D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 183 DALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp EEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEE
T ss_pred CEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEE
Confidence 9999843 3445788999999999999999875332 2344455454 478655443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-11 Score=101.64 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=80.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..++.+|+. +..+|+++|+++ ++..+++|++.|+.. ++.+...|.... . ..++||+
T Consensus 119 ~~~--~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~---~~~~~~~d~~~~-~---~~~~~D~ 189 (272)
T 3a27_A 119 ENE--VVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN---NVIPILADNRDV-E---LKDVADR 189 (272)
T ss_dssp TTC--EEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS---SEEEEESCGGGC-C---CTTCEEE
T ss_pred CCC--EEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---CEEEEECChHHc-C---ccCCceE
Confidence 567 9999999999999999987 445999999998 688888999888632 356777766544 2 1457999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
|++..+. ....++..+.+.|+|||.+++.+...
T Consensus 190 Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 190 VIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 9987654 55668888999999999999987655
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-11 Score=101.15 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=77.9
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||+|||+|..+..+++. +..+++++|+..++..++++..... +..++.+...|+... .++.||+|++..+
T Consensus 170 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-----~~~~~D~v~~~~v 242 (334)
T 2ip2_A 170 SFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLL--AGERVSLVGGDMLQE-----VPSNGDIYLLSRI 242 (334)
T ss_dssp EEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHH--HTTSEEEEESCTTTC-----CCSSCSEEEEESC
T ss_pred EEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcC--CCCcEEEecCCCCCC-----CCCCCCEEEEchh
Confidence 9999999999999988876 2338999999335666666654432 234578888877652 2357999999999
Q ss_pred CCCccc--HHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIEES--AAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+++..+ ...+++.+.++|+|||++++.+.
T Consensus 243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 243 IGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 975544 44999999999999999999864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=100.52 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=77.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-ccc---CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INA---LK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~---~~ 137 (232)
+.+ +|||||||+|..++.+++. + ..+++++|+++ ++..++++....+ +..++.+...|...... ... ..
T Consensus 79 ~~~--~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~l~~~~~~~ 154 (247)
T 1sui_A 79 NAK--NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLDEMIKDEKNH 154 (247)
T ss_dssp TCC--EEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHSGGGT
T ss_pred CcC--EEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHHHHHHhccCCC
Confidence 556 9999999999999999876 2 24999999998 5677777777655 34467777766533211 100 14
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++||+|++... ......+++.+.++|+|||.+++..
T Consensus 155 ~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 155 GSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp TCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred CCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 68999998543 3567889999999999999998753
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-12 Score=99.49 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=82.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
++. +|||||||+|..+..+++. +. +|+++|+|+. +..+.+++..+. .....++.+...|..+... ..+.
T Consensus 27 ~~~--~vLDiGcG~G~~~~~la~~~p~~-~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~---~~~~- 99 (218)
T 3mq2_A 27 YDD--VVLDVGTGDGKHPYKVARQNPSR-LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP---LSGV- 99 (218)
T ss_dssp SSE--EEEEESCTTCHHHHHHHHHCTTE-EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS---CCCE-
T ss_pred CCC--EEEEecCCCCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC---CCCC-
Confidence 556 9999999999999999987 45 9999999984 554444333221 1112357888887766432 2234
Q ss_pred cEEEEcccCC-----CcccHHHHHHHHHHhhCCCcEEEEEEeec---------------ChhH-HHHHHHHHh-cCceEE
Q 026858 141 DLVIAADVVY-----IEESAAQLVRAMEALVADDGVVLLGYQLR---------------SPEA-HKLFWEMCA-EVFLIE 198 (232)
Q Consensus 141 D~Ii~~~~~~-----~~~~~~~~l~~l~~~l~pgG~l~i~~~~r---------------~~~~-~~~~~~~~~-~~f~~~ 198 (232)
|.|.+..+.. +..+...+++.+.++|+|||.+++..... .+.. .+.+...+. .+|++.
T Consensus 100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~ 179 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLA 179 (218)
T ss_dssp EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCce
Confidence 6666322211 22233789999999999999999964221 1111 223555555 489887
Q ss_pred Eec
Q 026858 199 KVP 201 (232)
Q Consensus 199 ~~~ 201 (232)
.+.
T Consensus 180 ~~~ 182 (218)
T 3mq2_A 180 DCR 182 (218)
T ss_dssp EEE
T ss_pred eee
Confidence 764
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=90.72 Aligned_cols=122 Identities=17% Similarity=0.204 Sum_probs=84.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+..+++++|+++ ++..++.|...++. ++.+...|+... +++||+|
T Consensus 49 ~~~--~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~d~~~~------~~~~D~v 116 (207)
T 1wy7_A 49 EGK--VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG----KFKVFIGDVSEF------NSRVDIV 116 (207)
T ss_dssp TTC--EEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT----SEEEEESCGGGC------CCCCSEE
T ss_pred CcC--EEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC----CEEEEECchHHc------CCCCCEE
Confidence 566 9999999999999999988766899999998 56677777766542 467777665432 2479999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecC
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
+++.+++.. .....+++.+.+++ |.+++... ..+...+.+.+.+. .+|.++.+..
T Consensus 117 ~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~ 174 (207)
T 1wy7_A 117 IMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHL-AKPEVRRFIEKFSWEHGFVVTHRLT 174 (207)
T ss_dssp EECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEE-CCHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEcCCCccccCCchHHHHHHHHHhc---CcEEEEEe-CCcCCHHHHHHHHHHCCCeEEEEEE
Confidence 998887543 34456788888887 44554442 12233444555554 4787766543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-11 Score=96.50 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=74.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|..+..+++....+|+++|+++ ++..++++...++ + .++.+...|..... . ...+||
T Consensus 89 ~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~v~~~~~d~~~~~--~-~~~~fD 160 (235)
T 1jg1_A 89 LKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG--V-KNVHVILGDGSKGF--P-PKAPYD 160 (235)
T ss_dssp CCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT--C-CSEEEEESCGGGCC--G-GGCCEE
T ss_pred CCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEECCcccCC--C-CCCCcc
Confidence 44667 9999999999999999887414999999998 4667777766554 2 23677776652211 1 123599
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|++..++.+.. ..+.++|+|||++++.....
T Consensus 161 ~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 161 VIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp EEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred EEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 999988776432 36889999999999987544
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-11 Score=100.27 Aligned_cols=106 Identities=17% Similarity=0.142 Sum_probs=77.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cc-----
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-IN----- 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~----- 134 (232)
.++. +|||||||+|..+..+++. + ..+++++|+++ ++..++++...++ ...++.+...|...... ..
T Consensus 59 ~~~~--~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~~~~~~~~ 134 (239)
T 2hnk_A 59 SGAK--RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSALETLQVLIDSKSA 134 (239)
T ss_dssp HTCS--EEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred hCcC--EEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHHHHHHHhhccc
Confidence 3567 9999999999999999887 2 34999999998 4667777776654 33346777666433211 00
Q ss_pred ------cC-C-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ------AL-K-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ------~~-~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. . ++||+|++.. .......+++.+.++|+|||++++..
T Consensus 135 ~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 135 PSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 01 1 6799999863 34567789999999999999999864
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.7e-11 Score=100.71 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=79.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++. ++ ++.+|+++|+|+ ++..+++|+..|+ +..++.+...|+.... ++||+|
T Consensus 195 ~~~--~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~--l~~~v~~~~~D~~~~~------~~fD~V 262 (336)
T 2yx1_A 195 LND--VVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNK--LEHKIIPILSDVREVD------VKGNRV 262 (336)
T ss_dssp TTC--EEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCGGGCC------CCEEEE
T ss_pred CCC--EEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECChHHhc------CCCcEE
Confidence 567 999999999999999 88 556999999998 6889999999887 3345777777654332 679999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++..+.+. ..++..+.++|+|||.+++......
T Consensus 263 i~dpP~~~----~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 263 IMNLPKFA----HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EECCTTTG----GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred EECCcHhH----HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 98654432 3678889999999999988765554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-10 Score=88.61 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=65.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..+++.+..+++++|+++ ++..++.|.. ++.+...|+... +++||+|
T Consensus 51 ~~~--~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~~d~~~~------~~~~D~v 114 (200)
T 1ne2_A 51 GGR--SVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------GVNFMVADVSEI------SGKYDTW 114 (200)
T ss_dssp BTS--EEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------TSEEEECCGGGC------CCCEEEE
T ss_pred CCC--EEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--------CCEEEECcHHHC------CCCeeEE
Confidence 556 9999999999999999988766799999998 4555555443 246666665432 2589999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+++.++++... ...+++.+.+++ |.++++..
T Consensus 115 ~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~ 147 (200)
T 1ne2_A 115 IMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGN 147 (200)
T ss_dssp EECCCC-------CHHHHHHHHHHE---EEEEEEEE
T ss_pred EECCCchhccCchhHHHHHHHHHhc---CcEEEEEc
Confidence 99888865432 346777788877 55555553
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=98.43 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=59.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCC-c-ccccC-CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQ-D-QINAL-KP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~-~~ 138 (232)
++. +|||+|||+|.+++.++.. +. +++++|+++ ++..+++|+..++ +..++.+...|..+. . ..... ++
T Consensus 65 ~~~--~vLDlG~G~G~~~~~la~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLR--RGIDIGTGASCIYPLLGATLNGW-YFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCC--EEEEESCTTTTHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred CCC--EEEEeCCChhHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHHcC--CCccEEEEEcchhhhhhhhhhcccCC
Confidence 456 9999999999999888765 55 999999998 5778888887765 444578888876542 1 11111 25
Q ss_pred CccEEEEcccCCC
Q 026858 139 PFDLVIAADVVYI 151 (232)
Q Consensus 139 ~fD~Ii~~~~~~~ 151 (232)
+||+|+++++++.
T Consensus 140 ~fD~i~~npp~~~ 152 (254)
T 2h00_A 140 IYDFCMCNPPFFA 152 (254)
T ss_dssp CBSEEEECCCCC-
T ss_pred cccEEEECCCCcc
Confidence 7999999877664
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=97.56 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=76.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+++ +|||||||+|..++.+++. + ..+|+++|+++ ++..++++....+ +..++.+...|..... +...+ ||
T Consensus 56 ~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~--~~~~~-fD 128 (210)
T 3c3p_A 56 QPQ--LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVGDPLGIA--AGQRD-ID 128 (210)
T ss_dssp CCS--EEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEESCHHHHH--TTCCS-EE
T ss_pred CCC--EEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEecHHHHh--ccCCC-CC
Confidence 456 9999999999999999876 2 34999999998 5677777776554 3345677776653321 12235 99
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++.. .......+++.+.++|+|||.+++..
T Consensus 129 ~v~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 129 ILFMDC---DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEEET---TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred EEEEcC---ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 999863 24577889999999999999998743
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.4e-11 Score=95.52 Aligned_cols=110 Identities=10% Similarity=-0.053 Sum_probs=74.1
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc---CCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN---KPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~---~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
+|||||||+|..++.+|+. +...++++|+++ ++..++.++... ......++.+...|...........++||.|+
T Consensus 49 ~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~ 128 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMF 128 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEE
T ss_pred eEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEE
Confidence 8999999999999999877 334899999998 556666554321 11112457888887654221002246899998
Q ss_pred EcccCCCcc--------cHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 145 AADVVYIEE--------SAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 145 ~~~~~~~~~--------~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+..+-.+.. ....+++.+.++|+|||.+++.....
T Consensus 129 ~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 129 FLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp EESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred EeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 754322211 11579999999999999999986443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=95.04 Aligned_cols=111 Identities=10% Similarity=-0.024 Sum_probs=76.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCC-CcEEEEcchh-HHHHHHHHHHhcC----C--CCCCceEEEEeecCCCcccccC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGL-ADIVLTDISP-VMPALKHNLKRNK----P--VLNKSLKTSVLYWNNQDQINAL 136 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~-~~v~~~D~s~-~~~~~~~n~~~~~----~--~~~~~i~~~~~d~~~~~~~~~~ 136 (232)
++. +|||||||+|..++.+++.+. .+++++|+|+ ++..++.++..+. . .+ .++.+...|..........
T Consensus 49 ~~~--~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~ 125 (246)
T 2vdv_E 49 KKV--TIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFE 125 (246)
T ss_dssp CCE--EEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSC
T ss_pred CCC--EEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcc
Confidence 455 899999999999999998753 3899999998 5667777665541 0 12 3478888776553221122
Q ss_pred CCCccEEEEcccCCCccc--------HHHHHHHHHHhhCCCcEEEEEEee
Q 026858 137 KPPFDLVIAADVVYIEES--------AAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~--------~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.+.+|.|+...+--+... ...++..+.++|+|||.+++....
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~ 175 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV 175 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence 467999986532211111 157999999999999999997643
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=97.51 Aligned_cols=99 Identities=10% Similarity=0.064 Sum_probs=71.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-----CCCcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-----GLADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-----~~~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
++. +|||||||+|..+..+++. ...+|+++|+++.+ ..++ . ...++.+...|.......+...+
T Consensus 81 ~~~--~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~---~~~~v~~~~gD~~~~~~l~~~~~ 150 (236)
T 2bm8_A 81 RPR--TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----S---DMENITLHQGDCSDLTTFEHLRE 150 (236)
T ss_dssp CCS--EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----G---GCTTEEEEECCSSCSGGGGGGSS
T ss_pred CCC--EEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----c---cCCceEEEECcchhHHHHHhhcc
Confidence 346 9999999999999999875 23499999999842 2222 1 12457888887765411122223
Q ss_pred -CccEEEEcccCCCcccHHHHHHHHHH-hhCCCcEEEEEE
Q 026858 139 -PFDLVIAADVVYIEESAAQLVRAMEA-LVADDGVVLLGY 176 (232)
Q Consensus 139 -~fD~Ii~~~~~~~~~~~~~~l~~l~~-~l~pgG~l~i~~ 176 (232)
+||+|++... + .....++..+.+ +|+|||++++.+
T Consensus 151 ~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 151 MAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp SCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred CCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 6999998654 3 367889999997 999999999864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-11 Score=97.18 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=77.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccC--CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INAL--KP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~--~~ 138 (232)
+++ +|||+|||+|..++.+++. + ..+++++|+++ ++..++++...++ ...++.+...|...... .... .+
T Consensus 69 ~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 69 QAK--KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TCC--EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred CCC--EEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCHHHHHHHHHhcCCCC
Confidence 556 9999999999999999876 2 34999999998 4667777777655 33457777766532211 1101 15
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+||+|++... ......+++.+.++|+|||.+++..
T Consensus 145 ~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 145 TFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp CEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 7999998543 3566789999999999999999854
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=96.67 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=77.9
Q ss_pred cEEEeCccc---cHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-------ccC
Q 026858 70 RAIELGAGC---GAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-------NAL 136 (232)
Q Consensus 70 ~VLElGcGt---G~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-------~~~ 136 (232)
+|||||||+ |.++..+++. +. +|+++|.|+. +..++++... ..++.+...|+.+.... ...
T Consensus 80 ~vLDlGcG~pt~G~~~~~~~~~~p~~-~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 80 QFLDLGSGLPTVQNTHEVAQSVNPDA-RVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp EEEEETCCSCCSSCHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred EEEEECCCCCCCChHHHHHHHhCCCC-EEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhhccC
Confidence 899999999 9887666654 44 9999999984 5555554422 24578888887653210 011
Q ss_pred -CCCccEEEEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 137 -KPPFDLVIAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 137 -~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
..+||+|++..++++..+ ...+++.+.++|+|||.+++.+...
T Consensus 154 d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp CTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 147999999999986554 8999999999999999999987654
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-10 Score=97.46 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCC-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGL-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+++ +|||+| |+|.+++.+++.+. .+|+++|+++ ++..+++|+..++ +. ++.+...|+...... ...++||+
T Consensus 172 ~~~--~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g--~~-~v~~~~~D~~~~l~~-~~~~~fD~ 244 (373)
T 2qm3_A 172 ENK--DIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIG--YE-DIEIFTFDLRKPLPD-YALHKFDT 244 (373)
T ss_dssp TTC--EEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHT--CC-CEEEECCCTTSCCCT-TTSSCBSE
T ss_pred CCC--EEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-CEEEEEChhhhhchh-hccCCccE
Confidence 567 999999 99999999988754 5999999998 6788888888775 32 578888877652210 12357999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEE-EEEEee
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVV-LLGYQL 178 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l-~i~~~~ 178 (232)
|+++.++... ....+++.+.++|+|||++ ++....
T Consensus 245 Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 245 FITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp EEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred EEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 9997765433 3688999999999999954 555443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.9e-10 Score=87.93 Aligned_cols=117 Identities=12% Similarity=0.034 Sum_probs=75.8
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CC---------CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEE-EeecCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GL---------ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTS-VLYWNNQDQ 132 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~---------~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~-~~d~~~~~~ 132 (232)
.++. +|||||||+|..+..+++. +. .+++++|++++. . . ..+.+. ..|+.....
T Consensus 21 ~~~~--~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~---~-~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 21 RPGL--RVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P---L-EGATFLCPADVTDPRT 85 (196)
T ss_dssp CTTC--EEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C---C-TTCEEECSCCTTSHHH
T ss_pred CCCC--EEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c---C-CCCeEEEeccCCCHHH
Confidence 3567 9999999999999999877 53 489999999831 0 0 124555 555433211
Q ss_pred c----c-cCCCCccEEEEcccCCCc----ccH-------HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 133 I----N-ALKPPFDLVIAADVVYIE----ESA-------AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 133 ~----~-~~~~~fD~Ii~~~~~~~~----~~~-------~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
. . ...++||+|++..+++.. .+. ..+++.+.++|+|||.+++...... ....+...+...|.
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~f~ 163 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGS--QSRRLQRRLTEEFQ 163 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSG--GGHHHHHHHHHHEE
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCc--cHHHHHHHHHHHhc
Confidence 0 0 112479999986544321 111 4788999999999999998764332 23455555555554
Q ss_pred E
Q 026858 197 I 197 (232)
Q Consensus 197 ~ 197 (232)
.
T Consensus 164 ~ 164 (196)
T 2nyu_A 164 N 164 (196)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.2e-10 Score=97.89 Aligned_cols=143 Identities=11% Similarity=0.063 Sum_probs=97.2
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKP 114 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~ 114 (232)
.+..+.+++.+... ..++. +|||+|||+|.+++.+++.+. +|+++|+|+ ++..++.|+..++.
T Consensus 270 ~~e~l~~~~~~~l~-------------~~~~~--~VLDlgcG~G~~~~~la~~~~-~V~gvD~s~~al~~A~~n~~~~~~ 333 (433)
T 1uwv_A 270 VNQKMVARALEWLD-------------VQPED--RVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNGL 333 (433)
T ss_dssp HHHHHHHHHHHHHT-------------CCTTC--EEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhc-------------CCCCC--EEEECCCCCCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHHHHcCC
Confidence 35556666665544 33566 999999999999999998865 999999998 67888888887762
Q ss_pred CCCCceEEEEeecCCCcc-cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc
Q 026858 115 VLNKSLKTSVLYWNNQDQ-INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE 193 (232)
Q Consensus 115 ~~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~ 193 (232)
.++.+...|+..... .+...++||+|++.++.... ..+++.+.+ ++|++.+++++.... .......+.+.
T Consensus 334 ---~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p~t--lard~~~l~~~ 404 (433)
T 1uwv_A 334 ---QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPAT--LARDSEALLKA 404 (433)
T ss_dssp ---CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHHH--HHHHHHHHHHT
T ss_pred ---CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECChHH--HHhhHHHHHHC
Confidence 257888888766432 12234579999986554332 245665554 789998888764332 12233334456
Q ss_pred CceEEEecCC
Q 026858 194 VFLIEKVPHE 203 (232)
Q Consensus 194 ~f~~~~~~~~ 203 (232)
+|.+..+.-.
T Consensus 405 Gy~~~~~~~~ 414 (433)
T 1uwv_A 405 GYTIARLAML 414 (433)
T ss_dssp TCEEEEEEEE
T ss_pred CcEEEEEEEe
Confidence 8988776433
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=97.78 Aligned_cols=131 Identities=15% Similarity=0.108 Sum_probs=84.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHh-cCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKR-NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~-~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||||||+|.++..+++. +..+++++|+++ ++..++++... +......++.+...|...... ....++||+|++.
T Consensus 98 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~-~~~~~~fDvIi~d 176 (304)
T 3bwc_A 98 RVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVR-QTPDNTYDVVIID 176 (304)
T ss_dssp EEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH-SSCTTCEEEEEEE
T ss_pred eEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHH-hccCCceeEEEEC
Confidence 9999999999999999876 445999999998 45666665421 111123456777766543221 0024689999985
Q ss_pred ccCCCccc--H--HHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhc-CceEEEec
Q 026858 147 DVVYIEES--A--AQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 147 ~~~~~~~~--~--~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
.+...... + ..+++.+.++|+|||.+++..... .......+.+.+++ +|......
T Consensus 177 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 177 TTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp CC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEE
Confidence 54432111 1 578999999999999999875432 22345566666665 68655443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.6e-10 Score=94.85 Aligned_cols=165 Identities=10% Similarity=0.027 Sum_probs=103.6
Q ss_pred eEEEeecCeeEEEEEcCCCC-C---ccceeec----hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCcccc
Q 026858 8 VIELPIRDALLSIQQDNGSM-H---VGTSVWP----CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCG 79 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~---~g~~~W~----~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG 79 (232)
.+.+.+.+..+++..+.... + .|.+.+. -...++..+..... .++. +|||+|||+|
T Consensus 166 ~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la~~l~~~~~--------------~~~~--~vLD~gCGsG 229 (373)
T 3tm4_A 166 IFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAE--------------LDGG--SVLDPMCGSG 229 (373)
T ss_dssp EEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHHHHHHHHHHHT--------------CCSC--CEEETTCTTC
T ss_pred EEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHHHHHHHHHhhc--------------CCCC--EEEEccCcCc
Confidence 56777788777777765422 2 2323222 12334444333211 1456 8999999999
Q ss_pred HHHHHHHHhCC-CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc----c
Q 026858 80 AAGMAFYLLGL-ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE----E 153 (232)
Q Consensus 80 ~~s~~la~~~~-~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----~ 153 (232)
.+++.++..+. .+++++|+|+ ++..++.|+..++ +...+.+...|..+.. ...++||+|++++++... .
T Consensus 230 ~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~~~---~~~~~fD~Ii~npPyg~r~~~~~ 304 (373)
T 3tm4_A 230 TILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQLS---QYVDSVDFAISNLPYGLKIGKKS 304 (373)
T ss_dssp HHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGGGG---GTCSCEEEEEEECCCC------C
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhhCC---cccCCcCEEEECCCCCcccCcch
Confidence 99999998754 3899999999 5778888888776 3345788888775543 234689999997775421 1
Q ss_pred c----HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 154 S----AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 154 ~----~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
. ...+++.+.++| +|.++++... ...+.+.+. .+|...+.
T Consensus 305 ~~~~ly~~~~~~l~r~l--~g~~~~i~~~-----~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 305 MIPDLYMKFFNELAKVL--EKRGVFITTE-----KKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp CHHHHHHHHHHHHHHHE--EEEEEEEESC-----HHHHHHHHHHTTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHc--CCeEEEEECC-----HHHHHHHHHHcCCEEEEE
Confidence 2 266778888888 5555555432 123334443 37776554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=97.26 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=86.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. +..+|+++|+++ ++..+++|+..++. .++.+...|...... ..+.||
T Consensus 118 ~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~---~~~~fD 189 (315)
T 1ixk_A 118 PGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGE---LNVEFD 189 (315)
T ss_dssp TTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGG---GCCCEE
T ss_pred CCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhccc---ccccCC
Confidence 567 9999999999999998875 234899999998 57788888877652 136666665543321 345799
Q ss_pred EEEEcccCCC------cc----------------cHHHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHh-cCceE
Q 026858 142 LVIAADVVYI------EE----------------SAAQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCA-EVFLI 197 (232)
Q Consensus 142 ~Ii~~~~~~~------~~----------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~-~~f~~ 197 (232)
+|++..+... .. ....+++.+.++|+|||++++++..-.+.. .......++ .+|..
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~ 269 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL 269 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEE
Confidence 9998544211 11 115888999999999999999765444322 222333333 36666
Q ss_pred EEec
Q 026858 198 EKVP 201 (232)
Q Consensus 198 ~~~~ 201 (232)
..+.
T Consensus 270 ~~~~ 273 (315)
T 1ixk_A 270 LPLK 273 (315)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 5543
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-11 Score=97.53 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=66.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcch-hHH-HHH---HHHHHhcCCCCCCceEEEEeecCCCcccccCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDIS-PVM-PAL---KHNLKRNKPVLNKSLKTSVLYWNNQDQINALK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s-~~~-~~~---~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 137 (232)
++. +|||||||+|..+..+++. +. +|+++|+| +.| ..+ +++....+ + .++.+...+....+. ...
T Consensus 24 ~~~--~vLDiGCG~G~~~~~la~~~~~~-~v~GvD~s~~~ml~~A~~A~~~~~~~~--~-~~v~~~~~d~~~l~~--~~~ 95 (225)
T 3p2e_A 24 FDR--VHIDLGTGDGRNIYKLAINDQNT-FYIGIDPVKENLFDISKKIIKKPSKGG--L-SNVVFVIAAAESLPF--ELK 95 (225)
T ss_dssp CSE--EEEEETCTTSHHHHHHHHTCTTE-EEEEECSCCGGGHHHHHHHTSCGGGTC--C-SSEEEECCBTTBCCG--GGT
T ss_pred CCC--EEEEEeccCcHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHHHHHcC--C-CCeEEEEcCHHHhhh--hcc
Confidence 456 8999999999999999854 44 89999999 544 332 44333332 2 246777776654421 112
Q ss_pred CCccEEEEcccCCC-----cccHHHHHHHHHHhhCCCcEEEE
Q 026858 138 PPFDLVIAADVVYI-----EESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
+.+|.|.++.+... ......+++.++++|||||++++
T Consensus 96 d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 96 NIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp TCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred CeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 44666655433211 01235688999999999999998
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-10 Score=95.07 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=83.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +|||+|||+|.++..+++. + ..+++++|+++ ++..++++...+ +. +..++.+...|+.... ...+
T Consensus 97 ~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~-~~~~v~~~~~d~~~~~---~~~~ 170 (280)
T 1i9g_A 97 IFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-PPDNWRLVVSDLADSE---LPDG 170 (280)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-CCTTEEEECSCGGGCC---CCTT
T ss_pred CCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCCcEEEEECchHhcC---CCCC
Confidence 34667 9999999999999999875 2 34999999998 567777777654 20 1234677776654432 1245
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh--cCce
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA--EVFL 196 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~--~~f~ 196 (232)
.||+|++.. .+...+++.+.++|+|||.+++...... ....+.+.+. .+|.
T Consensus 171 ~~D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 171 SVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWT 223 (280)
T ss_dssp CEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBC
T ss_pred ceeEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHhcCCcC
Confidence 799999843 2344789999999999999999875432 2334444443 3554
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.9e-11 Score=98.36 Aligned_cols=126 Identities=9% Similarity=-0.105 Sum_probs=74.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEE--EeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTS--VLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..+++. .+|+++|+++++..++.+ ..........+.+. ..|.... .+++|
T Consensus 80 ~~~g~--~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~-~~~~~~~~~~v~~~~~~~D~~~l-----~~~~f 149 (276)
T 2wa2_A 80 VELKG--TVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEK-PRLVETFGWNLITFKSKVDVTKM-----EPFQA 149 (276)
T ss_dssp CCCCE--EEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCC-CCCCCCTTGGGEEEECSCCGGGC-----CCCCC
T ss_pred CCCCC--EEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhc-hhhhhhcCCCeEEEeccCcHhhC-----CCCCc
Confidence 34677 9999999999999999987 499999999842111110 00000011145665 5554332 14689
Q ss_pred cEEEEcccCCCccc----HH---HHHHHHHHhhCCCc--EEEEEEeecChhHHHHHHHHHhcCceEEE
Q 026858 141 DLVIAADVVYIEES----AA---QLVRAMEALVADDG--VVLLGYQLRSPEAHKLFWEMCAEVFLIEK 199 (232)
Q Consensus 141 D~Ii~~~~~~~~~~----~~---~~l~~l~~~l~pgG--~l~i~~~~r~~~~~~~~~~~~~~~f~~~~ 199 (232)
|+|++... +.... .. .+++.+.++|+||| .+++............+++.+...|....
T Consensus 150 D~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~f~~v~ 216 (276)
T 2wa2_A 150 DTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQARFGGGL 216 (276)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHHHCCEE
T ss_pred CEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHHcCCEE
Confidence 99998655 32211 11 37888999999999 88875433221212244455554454333
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=93.18 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=92.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
... +|||||||+|..+..+++. +..+++..|..+++..++++.... ...++.+...|+-... ...+|+|
T Consensus 179 ~~~--~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~---~~~rv~~~~gD~~~~~-----~~~~D~~ 248 (353)
T 4a6d_A 179 VFP--LMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQ---EEEQIDFQEGDFFKDP-----LPEADLY 248 (353)
T ss_dssp GCS--EEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC-----CCSEEEEESCTTTSC-----CCCCSEE
T ss_pred cCC--eEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhc---ccCceeeecCccccCC-----CCCceEE
Confidence 446 8999999999999988877 333889999877666666544322 3467899988875432 2458999
Q ss_pred EEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeecC-----hh------------------HHHHHHHHHhc-CceE
Q 026858 144 IAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLRS-----PE------------------AHKLFWEMCAE-VFLI 197 (232)
Q Consensus 144 i~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~-----~~------------------~~~~~~~~~~~-~f~~ 197 (232)
++..++|++.+ ...+++++++.|+|||++++.+..-. +. +..+|.+++.+ ||+.
T Consensus 249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~ 328 (353)
T 4a6d_A 249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD 328 (353)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 99999986654 46789999999999999999864221 10 13455666664 8988
Q ss_pred EEecC
Q 026858 198 EKVPH 202 (232)
Q Consensus 198 ~~~~~ 202 (232)
.++.+
T Consensus 329 v~v~~ 333 (353)
T 4a6d_A 329 FQFKK 333 (353)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 77754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=94.17 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=108.8
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceee-------chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVW-------PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W-------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
.|.+.+.+...+|.-+.++.+--.+-| |-...|+..+..... ..++. .|||.+||+|.
T Consensus 143 ~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~~-------------~~~~~--~llDp~CGSGt 207 (384)
T 3ldg_A 143 KIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLSN-------------WFPDK--PFVDPTCGSGT 207 (384)
T ss_dssp EEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHTT-------------CCTTS--CEEETTCTTSH
T ss_pred EEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHhC-------------CCCCC--eEEEeCCcCCH
Confidence 788888898888888865332222222 223456666666554 34667 89999999999
Q ss_pred HHHHHHHhCC---------------------------------------CcEEEEcchh-HHHHHHHHHHhcCCCCCCce
Q 026858 81 AGMAFYLLGL---------------------------------------ADIVLTDISP-VMPALKHNLKRNKPVLNKSL 120 (232)
Q Consensus 81 ~s~~la~~~~---------------------------------------~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i 120 (232)
+.+.+|..+. .+++++|+++ ++..++.|+..++ +...+
T Consensus 208 ~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~g--l~~~I 285 (384)
T 3ldg_A 208 FCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVG--LEDVV 285 (384)
T ss_dssp HHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT--CTTTE
T ss_pred HHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcC--CCCce
Confidence 9988886532 2599999998 6888899998876 44567
Q ss_pred EEEEeecCCCcccccCCCCccEEEEcccCC----CcccHHHHHHHHHHhhCC--CcEEEEEEeec
Q 026858 121 KTSVLYWNNQDQINALKPPFDLVIAADVVY----IEESAAQLVRAMEALVAD--DGVVLLGYQLR 179 (232)
Q Consensus 121 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~p--gG~l~i~~~~r 179 (232)
.+...|+.+... ...||+|++++++. ....+..+.+.+.+.+++ ||.+++.....
T Consensus 286 ~~~~~D~~~l~~----~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 286 KLKQMRLQDFKT----NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp EEEECCGGGCCC----CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred EEEECChHHCCc----cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 888887765432 34799999987764 224567788888888876 99999987543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-11 Score=102.31 Aligned_cols=105 Identities=19% Similarity=0.336 Sum_probs=73.6
Q ss_pred CcEEEeCccccH----HHHHHHHh-C-----CCcEEEEcchh-HHHHHHHHHHhc------------------C---C--
Q 026858 69 RRAIELGAGCGA----AGMAFYLL-G-----LADIVLTDISP-VMPALKHNLKRN------------------K---P-- 114 (232)
Q Consensus 69 ~~VLElGcGtG~----~s~~la~~-~-----~~~v~~~D~s~-~~~~~~~n~~~~------------------~---~-- 114 (232)
.+|||+|||||. +++.++.. + . +|+++|+|+ ++..++++.... . .
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~-~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRW-KVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE-EEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCe-EEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 499999999998 55656654 3 4 899999999 455655543100 0 0
Q ss_pred -----CCCCceEEEEeecCCCcccccCCCCccEEEEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 115 -----VLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYI--EESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 115 -----~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+...+.+...|+.... .+ ..++||+|+|.+++.+ ......+++.+++.|+|||.+++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~-~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQ-YN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSS-CC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCC-CC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 01135788888876632 11 1367999999988743 3445899999999999999999854
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.6e-10 Score=96.11 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=106.7
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeec-------hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWP-------CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~-------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
.|.+.+.+...++..+.++.+--.+-|. -...|+..+..... ..++. .|||.+||+|.
T Consensus 150 ~i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~~-------------~~~~~--~vlDp~CGSGt 214 (393)
T 3k0b_A 150 KLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTS-------------WHPDR--PFYDPVCGSGT 214 (393)
T ss_dssp CEEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHSC-------------CCTTS--CEEETTCTTSH
T ss_pred EEEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHhC-------------CCCCC--eEEEcCCCCCH
Confidence 7888888888888888653333333343 23446666655554 34566 89999999999
Q ss_pred HHHHHHHhCC---------------------------------------CcEEEEcchh-HHHHHHHHHHhcCCCCCCce
Q 026858 81 AGMAFYLLGL---------------------------------------ADIVLTDISP-VMPALKHNLKRNKPVLNKSL 120 (232)
Q Consensus 81 ~s~~la~~~~---------------------------------------~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i 120 (232)
+.+.+|..+. .+++++|+++ ++..++.|+..++ +...+
T Consensus 215 ~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~g--l~~~I 292 (393)
T 3k0b_A 215 IPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG--LGDLI 292 (393)
T ss_dssp HHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTT--CTTCS
T ss_pred HHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcC--CCCce
Confidence 9988886532 2599999999 6788889988876 44457
Q ss_pred EEEEeecCCCcccccCCCCccEEEEcccCCCc----ccHHHHHHHHHHhhCC--CcEEEEEEeec
Q 026858 121 KTSVLYWNNQDQINALKPPFDLVIAADVVYIE----ESAAQLVRAMEALVAD--DGVVLLGYQLR 179 (232)
Q Consensus 121 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~p--gG~l~i~~~~r 179 (232)
.+...|+.+... ..+||+|++++++... ..+..+.+.+.+.+++ ||.+++.....
T Consensus 293 ~~~~~D~~~~~~----~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 293 TFRQLQVADFQT----EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp EEEECCGGGCCC----CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred EEEECChHhCCC----CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 888887765432 3579999998776421 3456667777777766 99999887544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=93.53 Aligned_cols=106 Identities=17% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCC------CcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCccc-c
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGL------ADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQI-N 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~------~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~-~ 134 (232)
++. +|||||||+|..+..+++... .+|+++|+++ ++..++++...+... ...++.+...|....... .
T Consensus 80 ~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 80 PGS--RAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp TTC--EEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCC--EEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 567 999999999999998887632 3999999998 466777776654310 023467777776543200 0
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
...++||+|++..++.. +++.+.++|+|||++++....
T Consensus 158 ~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEcc
Confidence 12357999999877653 357889999999999998754
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-11 Score=97.00 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=76.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCc-ccccCC--C
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQD-QINALK--P 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~--~ 138 (232)
+++ +|||||||+|..++.+++. + ..+++++|+++ .+..++++...++ +..++.+...+..... ...... +
T Consensus 72 ~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~l~~l~~~~~~~ 147 (232)
T 3cbg_A 72 GAK--QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGPALATLEQLTQGKPLP 147 (232)
T ss_dssp TCC--EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHTSSSCC
T ss_pred CCC--EEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhcCCCC
Confidence 556 9999999999999999876 2 24999999998 4667777776654 3345677766543211 111112 6
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+||+|++... ......+++.+.++|+|||.+++..
T Consensus 148 ~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 148 EFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp CEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred CcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 7999997543 4567889999999999999999854
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-11 Score=96.27 Aligned_cols=105 Identities=11% Similarity=0.046 Sum_probs=77.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-ccc---CC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INA---LK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~---~~ 137 (232)
+.+ +|||||||+|..++.+++. + ..+++++|+++ ++..++++....+ +..++.+...|...... ... ..
T Consensus 70 ~~~--~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 70 NAK--KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp TCC--EEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHSTTCT
T ss_pred CCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHhccCCC
Confidence 456 9999999999999999876 2 34999999998 5677778777655 34457777766533211 100 14
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++||+|++.. .......+++.+.++|+|||.+++..
T Consensus 146 ~~fD~I~~d~---~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 146 GSYDFGFVDA---DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCcCEEEECC---chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 6799999753 34567889999999999999998753
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=96.67 Aligned_cols=132 Identities=14% Similarity=0.058 Sum_probs=88.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCCCc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~f 140 (232)
++. +|||+|||+|..+..++.. +..+|+++|+++ ++..+++|+..++. .++.+...|....... ....+.|
T Consensus 83 ~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 83 EDD--FILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp TTC--EEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHHHTTCCE
T ss_pred CcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhhhccccC
Confidence 567 9999999999999988874 435999999998 57788888877652 2466666654332210 0014579
Q ss_pred cEEEEcccCCCc------------------ccHHHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHh--cCceEEE
Q 026858 141 DLVIAADVVYIE------------------ESAAQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCA--EVFLIEK 199 (232)
Q Consensus 141 D~Ii~~~~~~~~------------------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~--~~f~~~~ 199 (232)
|+|++..+.... .....+++.+.++|+|||++++++....+.. .+.....++ .+|++..
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~ 237 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELII 237 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEEC
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEec
Confidence 999986554321 3457889999999999999999765443322 233333333 3566655
Q ss_pred ec
Q 026858 200 VP 201 (232)
Q Consensus 200 ~~ 201 (232)
+.
T Consensus 238 ~~ 239 (274)
T 3ajd_A 238 IK 239 (274)
T ss_dssp CC
T ss_pred Cc
Confidence 43
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.15 E-value=7.8e-10 Score=95.81 Aligned_cols=151 Identities=14% Similarity=0.076 Sum_probs=106.9
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeec-------hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWP-------CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~-------~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
.|.+.+.+..+++..+.++.+--.+-|. -...|+..+..... ..++. .|||.+||+|.
T Consensus 144 ~i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~~-------------~~~~~--~vlDp~CGSGt 208 (385)
T 3ldu_A 144 PIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTP-------------WKAGR--VLVDPMCGSGT 208 (385)
T ss_dssp CEEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTSC-------------CCTTS--CEEETTCTTCH
T ss_pred EEEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhhC-------------CCCCC--eEEEcCCCCCH
Confidence 7888888888888888653222222222 23446666666554 44667 99999999999
Q ss_pred HHHHHHHhCC---------------------------------------CcEEEEcchh-HHHHHHHHHHhcCCCCCCce
Q 026858 81 AGMAFYLLGL---------------------------------------ADIVLTDISP-VMPALKHNLKRNKPVLNKSL 120 (232)
Q Consensus 81 ~s~~la~~~~---------------------------------------~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i 120 (232)
+.+.+|..+. .+|+++|+++ ++..++.|+..++ +...+
T Consensus 209 ~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~g--l~~~i 286 (385)
T 3ldu_A 209 ILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAG--VDEYI 286 (385)
T ss_dssp HHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHT--CGGGE
T ss_pred HHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcC--CCCce
Confidence 9988876532 2699999998 6888889988876 33467
Q ss_pred EEEEeecCCCcccccCCCCccEEEEcccCCC----cccHHHHHHHHHHhhCC--CcEEEEEEeec
Q 026858 121 KTSVLYWNNQDQINALKPPFDLVIAADVVYI----EESAAQLVRAMEALVAD--DGVVLLGYQLR 179 (232)
Q Consensus 121 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~p--gG~l~i~~~~r 179 (232)
.+...|+.+... ..+||+|++++++.. ...+..+.+.+.+.+++ |+.+++.....
T Consensus 287 ~~~~~D~~~l~~----~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 287 EFNVGDATQFKS----EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp EEEECCGGGCCC----SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred EEEECChhhcCc----CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 888887765432 357999999887642 23566677777788876 89998887544
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-10 Score=94.60 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=81.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC--------CCCceEEEEeecCCCcccccCCCCc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV--------LNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~--------~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
+|||||||+|.++..+++.+..+++++|+++ ++..++++. ..... ...++.+...|..... .. .++|
T Consensus 78 ~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l--~~-~~~f 153 (281)
T 1mjf_A 78 RVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFI--KN-NRGF 153 (281)
T ss_dssp EEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHH--HH-CCCE
T ss_pred eEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHh--cc-cCCe
Confidence 9999999999999999877656999999998 466666665 22101 1245666665532211 11 4679
Q ss_pred cEEEEcccCCCc--cc--HHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceEE
Q 026858 141 DLVIAADVVYIE--ES--AAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLIE 198 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~--~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~~ 198 (232)
|+|++..+.... .. ...+++.+.++|+|||.+++..... .......+.+.+...|...
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v 217 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRV 217 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCce
Confidence 999985442211 11 2678999999999999999865332 3333455555555556433
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=96.37 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=84.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||||||+|.++..+++. +..+++++|+++ ++..++++.......+ ..++.+...|+.... ....++||+|++.
T Consensus 119 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fDvIi~d 196 (321)
T 2pt6_A 119 NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL--ENVTNTYDVIIVD 196 (321)
T ss_dssp EEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH--HHCCSCEEEEEEE
T ss_pred EEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHH--hhcCCCceEEEEC
Confidence 9999999999999999877 445999999999 4666666654311001 245777777653321 1124679999985
Q ss_pred ccCC--CcccH--HHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceEE
Q 026858 147 DVVY--IEESA--AQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLIE 198 (232)
Q Consensus 147 ~~~~--~~~~~--~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~~ 198 (232)
..-. ..... ..+++.+.++|+|||.+++..... .......+.+.+++.|...
T Consensus 197 ~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v 254 (321)
T 2pt6_A 197 SSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKV 254 (321)
T ss_dssp CCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred CcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCe
Confidence 4211 11121 788999999999999999865432 3344556666676666433
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=95.47 Aligned_cols=122 Identities=7% Similarity=-0.058 Sum_probs=72.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEE--EeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTS--VLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~--~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|..+..+++. .+|+++|+++++..++.+ ..........+.+. ..|..... +++|
T Consensus 72 ~~~g~--~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~-~~~~~~~~~~v~~~~~~~D~~~l~-----~~~f 141 (265)
T 2oxt_A 72 VELTG--RVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEV-PRITESYGWNIVKFKSRVDIHTLP-----VERT 141 (265)
T ss_dssp CCCCE--EEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCC-CCCCCBTTGGGEEEECSCCTTTSC-----CCCC
T ss_pred CCCCC--EEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhh-hhhhhccCCCeEEEecccCHhHCC-----CCCC
Confidence 34677 9999999999999999887 499999999842111100 00000011145655 55544321 4579
Q ss_pred cEEEEcccCCCcccH----H---HHHHHHHHhhCCCc--EEEEEEeecChhHHHHHHHHHhcCc
Q 026858 141 DLVIAADVVYIEESA----A---QLVRAMEALVADDG--VVLLGYQLRSPEAHKLFWEMCAEVF 195 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~----~---~~l~~l~~~l~pgG--~l~i~~~~r~~~~~~~~~~~~~~~f 195 (232)
|+|++... +..... . .+++.+.++|+||| .+++............++..+...|
T Consensus 142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f 204 (265)
T 2oxt_A 142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKW 204 (265)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHc
Confidence 99998655 322111 1 37888999999999 8887543322121124444444444
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.3e-10 Score=89.32 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=74.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
++. +|||+|||+|..+..+++. +. .+|+++|+++ ++..++++...+... ...++.+...|...... ..++
T Consensus 77 ~~~--~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 151 (226)
T 1i1n_A 77 EGA--KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA---EEAP 151 (226)
T ss_dssp TTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG---GGCC
T ss_pred CCC--EEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc---cCCC
Confidence 566 9999999999999988876 42 3999999998 466777776654310 02346777776653221 2457
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
||+|++..++.. +++.+.++|+|||++++....
T Consensus 152 fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 152 YDAIHVGAAAPV------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEEECSBBSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred cCEEEECCchHH------HHHHHHHhcCCCcEEEEEEec
Confidence 999998877643 346789999999999998643
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=94.32 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=74.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.+++.+|+.+. +|+++|+++ ++..+++|+..|+ +. +.+...|+..... .+||+|
T Consensus 290 ~~~--~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ng--l~--v~~~~~d~~~~~~-----~~fD~V 357 (425)
T 2jjq_A 290 EGE--KILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINN--VD--AEFEVASDREVSV-----KGFDTV 357 (425)
T ss_dssp CSS--EEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHT--CC--EEEEECCTTTCCC-----TTCSEE
T ss_pred CCC--EEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcC--Cc--EEEEECChHHcCc-----cCCCEE
Confidence 456 899999999999999998866 999999998 5788888888776 32 6777777655431 279999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++.++.. ...+.+++.+. .++|+|.+++++.
T Consensus 358 v~dPPr~--g~~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 358 IVDPPRA--GLHPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp EECCCTT--CSCHHHHHHHH-HHCCSEEEEEESC
T ss_pred EEcCCcc--chHHHHHHHHH-hcCCCcEEEEECC
Confidence 9866532 22234566665 4899999999874
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-09 Score=92.19 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=88.4
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPV 115 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~ 115 (232)
+..+..++.+... . .+. +|||+|||+|.+++.+|+.. .+|+++|+++ ++..++.|+..|+.
T Consensus 199 ~~~l~~~~~~~~~-------------~-~~~--~vLDl~cG~G~~~l~la~~~-~~V~gvd~~~~ai~~a~~n~~~ng~- 260 (369)
T 3bt7_A 199 NIQMLEWALDVTK-------------G-SKG--DLLELYCGNGNFSLALARNF-DRVLATEIAKPSVAAAQYNIAANHI- 260 (369)
T ss_dssp HHHHHHHHHHHTT-------------T-CCS--EEEEESCTTSHHHHHHGGGS-SEEEEECCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhh-------------c-CCC--EEEEccCCCCHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC-
Confidence 3556666666544 2 246 89999999999999999865 4999999998 68888899988763
Q ss_pred CCCceEEEEeecCCCcc-cccC------------CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChh
Q 026858 116 LNKSLKTSVLYWNNQDQ-INAL------------KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPE 182 (232)
Q Consensus 116 ~~~~i~~~~~d~~~~~~-~~~~------------~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~ 182 (232)
.++.+...|...... .... ...||+|++.++-.. +...+.+.++++|+++++..... .
T Consensus 261 --~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g------~~~~~~~~l~~~g~ivyvsc~p~-t 331 (369)
T 3bt7_A 261 --DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG------LDSETEKMVQAYPRILYISCNPE-T 331 (369)
T ss_dssp --CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC------CCHHHHHHHTTSSEEEEEESCHH-H
T ss_pred --CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc------cHHHHHHHHhCCCEEEEEECCHH-H
Confidence 346777666533211 0000 037999998655431 23345566668888776653322 1
Q ss_pred HHHHHHHHHhcCceEEEecCCC
Q 026858 183 AHKLFWEMCAEVFLIEKVPHED 204 (232)
Q Consensus 183 ~~~~~~~~~~~~f~~~~~~~~~ 204 (232)
....+..+ .++|.++.+....
T Consensus 332 ~ard~~~l-~~~y~~~~~~~~D 352 (369)
T 3bt7_A 332 LCKNLETL-SQTHKVERLALFD 352 (369)
T ss_dssp HHHHHHHH-HHHEEEEEEEEEC
T ss_pred HHHHHHHH-hhCcEEEEEEeec
Confidence 12223333 3468877775444
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=94.63 Aligned_cols=128 Identities=15% Similarity=0.137 Sum_probs=85.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc-CCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN-KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||||||+|.++..+++. +..+++++|+++ +++.++++.... ......++.+...|..... ....++||+|++.
T Consensus 78 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l--~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 78 HVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI--AKSENQYDVIMVD 155 (275)
T ss_dssp EEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH--HTCCSCEEEEEES
T ss_pred EEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHH--hhCCCCeeEEEEC
Confidence 9999999999999999887 556999999998 466666665431 1111345777776643211 1124679999984
Q ss_pred ccCCCcc----cHHHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCceEEE
Q 026858 147 DVVYIEE----SAAQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFLIEK 199 (232)
Q Consensus 147 ~~~~~~~----~~~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~~~~ 199 (232)
....... ....+++.+.++|+|||.+++.... .+........+.+++.|....
T Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~ 214 (275)
T 1iy9_A 156 STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITK 214 (275)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeE
Confidence 4321111 1267899999999999999987433 223445566667777675433
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=93.70 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=70.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+++. +. +++++|+++. +..++++. ..+.+...|+.... ..+++||
T Consensus 85 ~~~--~vLdiG~G~G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~~~fD 150 (269)
T 1p91_A 85 KAT--AVLDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRY--------PQVTFCVASSHRLP---FSDTSMD 150 (269)
T ss_dssp TCC--EEEEETCTTSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHC--------TTSEEEECCTTSCS---BCTTCEE
T ss_pred CCC--EEEEECCCCCHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhC--------CCcEEEEcchhhCC---CCCCcee
Confidence 556 9999999999999988876 55 9999999984 44443321 12466666654432 2346899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+|++..+. ..++.+.++|+|||.+++......
T Consensus 151 ~v~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 151 AIIRIYAP-------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEEESCC-------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEeCCh-------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 99986552 257889999999999999987654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=93.26 Aligned_cols=116 Identities=9% Similarity=-0.049 Sum_probs=79.8
Q ss_pred cEEEeCccccHHHHHHHHhCC------CcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 70 RAIELGAGCGAAGMAFYLLGL------ADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~------~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+|||+|||+|.+++.+++... .+++++|+++ ++..++.|+...+. .+.+...|..... ..++||+
T Consensus 133 ~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~----~~~i~~~D~l~~~----~~~~fD~ 204 (344)
T 2f8l_A 133 SILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ----KMTLLHQDGLANL----LVDPVDV 204 (344)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC----CCEEEESCTTSCC----CCCCEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC----CceEEECCCCCcc----ccCCccE
Confidence 999999999999988876521 3899999998 56777777766542 2455555543322 2457999
Q ss_pred EEEcccCCCccc-----------------H-HHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhc
Q 026858 143 VIAADVVYIEES-----------------A-AQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAE 193 (232)
Q Consensus 143 Ii~~~~~~~~~~-----------------~-~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~ 193 (232)
|++++++..... . ..++..+.+.|+|||+++++.+.. .......+.+.+.+
T Consensus 205 Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~ 275 (344)
T 2f8l_A 205 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK 275 (344)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred EEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHh
Confidence 999988632211 1 257899999999999999887433 11224555665554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=95.77 Aligned_cols=127 Identities=11% Similarity=0.096 Sum_probs=84.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||||||+|.++..+++. +..+++++|+++. +..++++.......+ ..++.+...|..... ....++||+|++.
T Consensus 81 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD~Ii~d 158 (283)
T 2i7c_A 81 NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL--ENVTNTYDVIIVD 158 (283)
T ss_dssp EEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH--HHCCSCEEEEEEE
T ss_pred eEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHH--HhCCCCceEEEEc
Confidence 9999999999999999876 3459999999994 566666543321111 245677766543321 1124679999984
Q ss_pred ccCC--CcccH--HHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceEE
Q 026858 147 DVVY--IEESA--AQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLIE 198 (232)
Q Consensus 147 ~~~~--~~~~~--~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~~ 198 (232)
.... ....+ ..+++.+.++|+|||.+++..... .......+.+.+++.|...
T Consensus 159 ~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v 216 (283)
T 2i7c_A 159 SSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKV 216 (283)
T ss_dssp CCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCce
Confidence 3222 12222 689999999999999999875432 2334455666676666533
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-11 Score=108.71 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=71.4
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+++|||||||.|.++..+|+.|+ +|+|+|.++. +..++..+..++. -++.+...+..+... ...+++||+|++.
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~---~~~~~~~~~~~~~~~-~~~~~~fD~v~~~ 141 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPD---FAAEFRVGRIEEVIA-ALEEGEFDLAIGL 141 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTT---SEEEEEECCHHHHHH-HCCTTSCSEEEEE
T ss_pred CCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCC---CceEEEECCHHHHhh-hccCCCccEEEEC
Confidence 44999999999999999999999 9999999984 5555555554431 135666665433211 1235689999999
Q ss_pred ccCCCcccHHHH--HHHHHHhhCCCcEEEEEE
Q 026858 147 DVVYIEESAAQL--VRAMEALVADDGVVLLGY 176 (232)
Q Consensus 147 ~~~~~~~~~~~~--l~~l~~~l~pgG~l~i~~ 176 (232)
.++++..+...+ +..+.+.++++|..++..
T Consensus 142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred cchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 999876554322 234556677777666543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=93.74 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=69.9
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++. +..+++++|+..++..++. ..++.+...|+.... +.. |+|++..+
T Consensus 206 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~d~~~~~-----p~~-D~v~~~~v 270 (368)
T 3reo_A 206 TIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA---------FSGVEHLGGDMFDGV-----PKG-DAIFIKWI 270 (368)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC---------CTTEEEEECCTTTCC-----CCC-SEEEEESC
T ss_pred EEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh---------cCCCEEEecCCCCCC-----CCC-CEEEEech
Confidence 9999999999999988876 3338999999443322111 145788888876422 123 99999999
Q ss_pred CCCcc--cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIEE--SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+.. ....++++++++|+|||++++.+.
T Consensus 271 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 271 CHDWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GGGBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 98554 455889999999999999999764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=90.20 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=72.9
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CC------CcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCccc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GL------ADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~------~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~ 133 (232)
.++. +|||+|||+|..+..+++. +. .+|+++|+++ ++..++++....... ...++.+...|......
T Consensus 83 ~~~~--~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~- 159 (227)
T 1r18_A 83 KPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP- 159 (227)
T ss_dssp CTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG-
T ss_pred CCCC--EEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC-
Confidence 3567 9999999999999888874 42 4899999998 466666665543200 01235777776654221
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
..++||+|++..++.+. .+.+.++|+|||++++...
T Consensus 160 --~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 160 --PNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp --GGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEEES
T ss_pred --cCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEEEe
Confidence 12579999998877642 3678999999999999864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-10 Score=96.10 Aligned_cols=124 Identities=16% Similarity=0.165 Sum_probs=80.9
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHh--cCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKR--NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~--~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+|||||||+|.++..+++. +..+++++|+++ ++..++++... +.. ...++.+...|..... ....++||+|++
T Consensus 93 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~-~~~~v~~~~~D~~~~l--~~~~~~fD~Ii~ 169 (296)
T 1inl_A 93 KVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF-DDPRAEIVIANGAEYV--RKFKNEFDVIII 169 (296)
T ss_dssp EEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHG--GGCSSCEEEEEE
T ss_pred EEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccc-CCCceEEEECcHHHHH--hhCCCCceEEEE
Confidence 9999999999999999887 556999999998 46666666543 111 1245677776643321 112457999997
Q ss_pred cccCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCce
Q 026858 146 ADVVYIEE-----SAAQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 146 ~~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~ 196 (232)
..+-.+.. ....+++.+.++|+|||.+++.... ..........+.+.+.|.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 227 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP 227 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCC
Confidence 43211011 2267899999999999999987433 223334555555655454
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=92.51 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=74.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CC-CcEEEEcchh-HHHHHHHHHHh-------cCC-CCCCceEEEEeecCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GL-ADIVLTDISP-VMPALKHNLKR-------NKP-VLNKSLKTSVLYWNNQD 131 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~-~~v~~~D~s~-~~~~~~~n~~~-------~~~-~~~~~i~~~~~d~~~~~ 131 (232)
..++. +|||+|||+|.++..+++. +. .+++++|+++ ++..+++|... |.. ....++.+...|.....
T Consensus 103 ~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~ 180 (336)
T 2b25_A 103 INPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 180 (336)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc
Confidence 34677 9999999999999999886 53 5999999998 56777777663 211 12245778777765542
Q ss_pred ccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 132 QINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 132 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
. ....+.||+|++..... ..+++.+.++|+|||.+++....
T Consensus 181 ~-~~~~~~fD~V~~~~~~~-----~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 181 E-DIKSLTFDAVALDMLNP-----HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp --------EEEEEECSSST-----TTTHHHHGGGEEEEEEEEEEESS
T ss_pred c-ccCCCCeeEEEECCCCH-----HHHHHHHHHhcCCCcEEEEEeCC
Confidence 1 11234799999854322 23788999999999999987653
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=94.82 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=83.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHh-cCC-CCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKR-NKP-VLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~-~~~-~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+|||||||+|.++..+++. +..+++++|+++ ++..++++... +.. .-..++.+...|..... ....++||+|++
T Consensus 80 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD~Ii~ 157 (314)
T 1uir_A 80 RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYL--ERTEERYDVVII 157 (314)
T ss_dssp EEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHH--HHCCCCEEEEEE
T ss_pred eEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHH--HhcCCCccEEEE
Confidence 9999999999999999876 445999999998 46666665543 111 01245677766653321 112468999998
Q ss_pred cccCCC---c--cc--HHHHHHHHHHhhCCCcEEEEEEeec---ChhHHHHHHHHHhcCceE
Q 026858 146 ADVVYI---E--ES--AAQLVRAMEALVADDGVVLLGYQLR---SPEAHKLFWEMCAEVFLI 197 (232)
Q Consensus 146 ~~~~~~---~--~~--~~~~l~~l~~~l~pgG~l~i~~~~r---~~~~~~~~~~~~~~~f~~ 197 (232)
..+... . .. ...+++.+.++|+|||.+++..... +........+.++.-|..
T Consensus 158 d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~ 219 (314)
T 1uir_A 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRY 219 (314)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSE
T ss_pred CCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCc
Confidence 654332 1 11 4788999999999999999864332 223455566666665643
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-10 Score=94.93 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=77.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||||||+|.++..+++. +..+++++|+++. +..++++.......+ ..++.+...|..... ....++||+|++.
T Consensus 111 ~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l--~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 111 RVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL--KNHKNEFDVIITD 188 (314)
T ss_dssp EEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH--HHCTTCEEEEEEC
T ss_pred EEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHH--HhcCCCceEEEEc
Confidence 9999999999999999876 4459999999994 566666554321011 345676666543221 1124679999984
Q ss_pred ccCCC--cccH--HHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCce
Q 026858 147 DVVYI--EESA--AQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 147 ~~~~~--~~~~--~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~ 196 (232)
..-.. .... ..+++.+.++|+|||.+++.... ..........+.++.-|.
T Consensus 189 ~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~ 244 (314)
T 2b2c_A 189 SSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFP 244 (314)
T ss_dssp CC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCC
Confidence 42211 1111 68899999999999999986422 122333444555555454
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-09 Score=90.00 Aligned_cols=123 Identities=13% Similarity=0.040 Sum_probs=80.9
Q ss_pred CcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 69 RRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
.+|||||||+|.++..+++. +. +++++|+++. +..++++.... ...++.+...|...... ....++||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~-~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQS-RNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAE-SFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHH-TCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHh-hccCCCCCEEEE
Confidence 38999999999999999884 45 9999999994 55555554322 13456777666433211 011367999998
Q ss_pred cccCC--Cccc--HHHHHHHHHHhhCCCcEEEEEEeecCh-hHHHHHHHHHhcCce
Q 026858 146 ADVVY--IEES--AAQLVRAMEALVADDGVVLLGYQLRSP-EAHKLFWEMCAEVFL 196 (232)
Q Consensus 146 ~~~~~--~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~~-~~~~~~~~~~~~~f~ 196 (232)
..... .... ...+++.++++|+|||.+++....... .....+.+.+.+-|.
T Consensus 166 D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~ 221 (317)
T 3gjy_A 166 DVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE 221 (317)
T ss_dssp CCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS
T ss_pred CCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC
Confidence 43221 1111 267899999999999999886643322 223455666666664
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.5e-10 Score=90.87 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=84.1
Q ss_pred CCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 68 RRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+.+|||||||+|.+++.++.. +..+|+++|+++ +++.++.|+..++.. ..+...|..... ..+.||++++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~----~~~~v~D~~~~~----p~~~~DvaL~ 204 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP----HRTNVADLLEDR----LDEPADVTLL 204 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC----EEEEECCTTTSC----CCSCCSEEEE
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC----ceEEEeeecccC----CCCCcchHHH
Confidence 349999999999999988776 555999999999 688999998887632 356666554443 3567999999
Q ss_pred cccCCCccc--HHHHHHHHHHhhCCCcEEEEEEe----ecChhH----HHHHHHHHh-cCceEEEec
Q 026858 146 ADVVYIEES--AAQLVRAMEALVADDGVVLLGYQ----LRSPEA----HKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 146 ~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~----~r~~~~----~~~~~~~~~-~~f~~~~~~ 201 (232)
.-.++.-++ ....+ .+...|+++|.++-... .|.+.. ...|.+.+. +++.+.++.
T Consensus 205 lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 205 LKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp TTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeee
Confidence 887763322 22334 78889999887765432 233322 233333344 477777764
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-10 Score=99.24 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=86.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+|.. +..+|+++|+++ ++..++.|+.+++ +. +.+...|...... ...++||
T Consensus 101 ~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G--~~--v~~~~~Da~~l~~--~~~~~FD 172 (464)
T 3m6w_A 101 PGE--RVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG--AP--LAVTQAPPRALAE--AFGTYFH 172 (464)
T ss_dssp TTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC--CC--CEEECSCHHHHHH--HHCSCEE
T ss_pred CCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--Ce--EEEEECCHHHhhh--hccccCC
Confidence 567 9999999999999998865 334899999998 5778888888776 22 4555544322211 1246899
Q ss_pred EEEEcccCCC-------cc---------------cHHHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc--Cce
Q 026858 142 LVIAADVVYI-------EE---------------SAAQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE--VFL 196 (232)
Q Consensus 142 ~Ii~~~~~~~-------~~---------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~--~f~ 196 (232)
+|++..+... ++ ....++..+.++|+|||++++++..-.+.. .+.....+++ +|+
T Consensus 173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~ 252 (464)
T 3m6w_A 173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFR 252 (464)
T ss_dssp EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEE
T ss_pred EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcE
Confidence 9997544311 11 126788899999999999998765444332 2333333332 577
Q ss_pred EEEec
Q 026858 197 IEKVP 201 (232)
Q Consensus 197 ~~~~~ 201 (232)
+..+.
T Consensus 253 l~~~~ 257 (464)
T 3m6w_A 253 LEDAR 257 (464)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 76654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-10 Score=94.71 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=80.6
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|||||||+|.++..+++. +..+|+++|+++ ++..++++.......+ ..++.+...|+..... ....++||+|++.
T Consensus 123 ~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~-~~~~~~fDlIi~d 201 (334)
T 1xj5_A 123 KVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK-NAAEGSYDAVIVD 201 (334)
T ss_dssp EEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH-TSCTTCEEEEEEC
T ss_pred EEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHH-hccCCCccEEEEC
Confidence 9999999999999999876 345999999998 4666666654320001 2457777776543211 0113579999985
Q ss_pred cc--CCCccc--HHHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCce
Q 026858 147 DV--VYIEES--AAQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 147 ~~--~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~ 196 (232)
.. ...... ...+++.+.++|+|||.+++.... ..........+.++..|.
T Consensus 202 ~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 257 (334)
T 1xj5_A 202 SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK 257 (334)
T ss_dssp CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred CCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCc
Confidence 43 221121 478999999999999999986322 222223334444544453
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-09 Score=92.89 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=82.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--------------CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--------------GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNN 129 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--------------~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~ 129 (232)
++. +|||.|||+|.+.+.+++. ...+++|+|+++ ++..++.|+...+... ..+.+...|...
T Consensus 171 ~~~--~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~-~~~~i~~gD~l~ 247 (445)
T 2okc_A 171 MGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT-DRSPIVCEDSLE 247 (445)
T ss_dssp TTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS-SCCSEEECCTTT
T ss_pred CCC--EEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc-CCCCEeeCCCCC
Confidence 456 8999999999988877653 123899999998 5667777777654210 023444444332
Q ss_pred CcccccCCCCccEEEEcccCCCccc-----------------HHHHHHHHHHhhCCCcEEEEEEeec---ChhHHHHHHH
Q 026858 130 QDQINALKPPFDLVIAADVVYIEES-----------------AAQLVRAMEALVADDGVVLLGYQLR---SPEAHKLFWE 189 (232)
Q Consensus 130 ~~~~~~~~~~fD~Ii~~~~~~~~~~-----------------~~~~l~~l~~~l~pgG~l~i~~~~r---~~~~~~~~~~ 189 (232)
.. ..++||+|++++++..... ...+++.+.++|+|||++.++.+.. .......+.+
T Consensus 248 ~~----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~ 323 (445)
T 2okc_A 248 KE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRK 323 (445)
T ss_dssp SC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHH
T ss_pred Cc----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHH
Confidence 22 1247999999888753211 1368899999999999999887532 1122345565
Q ss_pred HHhcCceEEEe
Q 026858 190 MCAEVFLIEKV 200 (232)
Q Consensus 190 ~~~~~f~~~~~ 200 (232)
.+-+.+.++.+
T Consensus 324 ~L~~~~~l~~i 334 (445)
T 2okc_A 324 RLLQDFNLHTI 334 (445)
T ss_dssp HHHHHEEEEEE
T ss_pred HHHhcCcEEEE
Confidence 44443444443
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-09 Score=86.53 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=69.5
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+|||||||+|.+++.+. +..+|+++|+++ ++..++.+...++. ...+...|..... ..+.||+|++..
T Consensus 107 ~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~----~~~~~v~D~~~~~----~~~~~DvvLllk 176 (253)
T 3frh_A 107 RRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW----DFTFALQDVLCAP----PAEAGDLALIFK 176 (253)
T ss_dssp SEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC----EEEEEECCTTTSC----CCCBCSEEEEES
T ss_pred CeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC----CceEEEeecccCC----CCCCcchHHHHH
Confidence 399999999999999888 445999999998 68888888877653 2366666655444 245899999987
Q ss_pred cCCCc-ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 148 VVYIE-ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 148 ~~~~~-~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+++.- .........+...|+++|.++-..
T Consensus 177 ~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 177 LLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp CHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 66532 111223336777888886665443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.2e-10 Score=91.86 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=57.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..++..+. +|+++|+++ ++..++++...+. ...++.+...|+.... ...||
T Consensus 26 ~~~~~--~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~~-----~~~fD 95 (285)
T 1zq9_A 26 LRPTD--VVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTD-----LPFFD 95 (285)
T ss_dssp CCTTC--EEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSC-----CCCCS
T ss_pred CCCCC--EEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceeccc-----chhhc
Confidence 34566 999999999999999998877 999999998 4566666554332 2235677777765443 13799
Q ss_pred EEEEcccCCC
Q 026858 142 LVIAADVVYI 151 (232)
Q Consensus 142 ~Ii~~~~~~~ 151 (232)
+|+++.+++.
T Consensus 96 ~vv~nlpy~~ 105 (285)
T 1zq9_A 96 TCVANLPYQI 105 (285)
T ss_dssp EEEEECCGGG
T ss_pred EEEEecCccc
Confidence 9998766554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.4e-09 Score=91.12 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=83.9
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
...+++++.+... ..++. +|||+|||+|.+++.+++. ...+++++|+++. +..+
T Consensus 24 P~~l~~~~~~~~~-------------~~~~~--~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------- 80 (421)
T 2ih2_A 24 PPEVVDFMVSLAE-------------APRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------- 80 (421)
T ss_dssp CHHHHHHHHHHCC-------------CCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------
T ss_pred CHHHHHHHHHhhc-------------cCCCC--EEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------
Confidence 3556777776654 33455 9999999999999988874 3349999999983 2211
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc-----------------------------HHHHHHHHHH
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES-----------------------------AAQLVRAMEA 164 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-----------------------------~~~~l~~l~~ 164 (232)
.++.+...|+.... ..++||+|++++++..... ...+++.+.+
T Consensus 81 ----~~~~~~~~D~~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~ 152 (421)
T 2ih2_A 81 ----PWAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVR 152 (421)
T ss_dssp ----TTEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHH
T ss_pred ----CCCcEEeCChhhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHH
Confidence 23566666654332 2357999999887753221 1256888999
Q ss_pred hhCCCcEEEEEEeecC--hhHHHHHHHHHhc
Q 026858 165 LVADDGVVLLGYQLRS--PEAHKLFWEMCAE 193 (232)
Q Consensus 165 ~l~pgG~l~i~~~~r~--~~~~~~~~~~~~~ 193 (232)
+|+|||+++++.+..- ......+.+.+.+
T Consensus 153 ~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~ 183 (421)
T 2ih2_A 153 LLKPGGVLVFVVPATWLVLEDFALLREFLAR 183 (421)
T ss_dssp HEEEEEEEEEEEEGGGGTCGGGHHHHHHHHH
T ss_pred HhCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence 9999999999876531 1123455555543
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.6e-09 Score=94.92 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=77.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+|.. +..+|+++|+++ ++..+++|+.+++. .++.+...|...... ...+.||
T Consensus 117 ~g~--~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv~~~~~D~~~~~~--~~~~~fD 189 (479)
T 2frx_A 117 APQ--RVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNVALTHFDGRVFGA--AVPEMFD 189 (479)
T ss_dssp CCS--EEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCCSTTHHH--HSTTCEE
T ss_pred CCC--EEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcEEEEeCCHHHhhh--hccccCC
Confidence 556 9999999999999998876 234999999998 57788888887652 235666665443221 1246799
Q ss_pred EEEEcccCCC-------cc---------------cHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYI-------EE---------------SAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~-------~~---------------~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.|++..+... ++ ....++..+.++|+|||++++++..-
T Consensus 190 ~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 190 AILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp EEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 9998544321 11 12467888999999999999976543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-10 Score=94.42 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=79.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHh--cCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKR--NKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~--~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+|||||||+|.++..+++. +..+++++|+++ ++..++++... +.. ...++.+...|..... ....++||+|++
T Consensus 98 ~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~-~~~rv~v~~~Da~~~l--~~~~~~fD~Ii~ 174 (304)
T 2o07_A 98 KVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY-SSSKLTLHVGDGFEFM--KQNQDAFDVIIT 174 (304)
T ss_dssp EEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG-GCTTEEEEESCHHHHH--HTCSSCEEEEEE
T ss_pred EEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhccc-CCCcEEEEECcHHHHH--hhCCCCceEEEE
Confidence 9999999999999999887 345999999998 46666666543 110 1245676666543211 112467999998
Q ss_pred cccCCCcc----cHHHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCceE
Q 026858 146 ADVVYIEE----SAAQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFLI 197 (232)
Q Consensus 146 ~~~~~~~~----~~~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~~ 197 (232)
........ ....+++.+.++|+|||.+++.... ..........+.+..-|..
T Consensus 175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~ 232 (304)
T 2o07_A 175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV 232 (304)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCC
Confidence 54322111 2356899999999999999986532 2323334444555555543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=96.59 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=86.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+|.. +..+|+++|+++ .+..+++|+.+++.. ++.+...|...... ...+.||
T Consensus 105 ~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~---nv~v~~~Da~~l~~--~~~~~FD 177 (456)
T 3m4x_A 105 PGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS---NAIVTNHAPAELVP--HFSGFFD 177 (456)
T ss_dssp TTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS---SEEEECCCHHHHHH--HHTTCEE
T ss_pred CCC--EEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---ceEEEeCCHHHhhh--hccccCC
Confidence 567 9999999999999888865 335999999998 578888898887632 35555554322211 1246899
Q ss_pred EEEEcccCCCcc----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc-CceE
Q 026858 142 LVIAADVVYIEE----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE-VFLI 197 (232)
Q Consensus 142 ~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~-~f~~ 197 (232)
+|++..+..... ....++..+.++|+|||++++++-...+.. .+.....+.+ +|++
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l 257 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTI 257 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEE
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEE
Confidence 999866532111 122678889999999999998765554433 3333333332 4766
Q ss_pred EEec
Q 026858 198 EKVP 201 (232)
Q Consensus 198 ~~~~ 201 (232)
..+.
T Consensus 258 ~~~~ 261 (456)
T 3m4x_A 258 EEIP 261 (456)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 6653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=93.16 Aligned_cols=96 Identities=13% Similarity=0.049 Sum_probs=72.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. +|||||||+|..+..+++.. ..+++++|+..++..++. . ..+.+...|+.... +. ||+|
T Consensus 209 ~~~--~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~--------~-~~v~~~~~d~~~~~-----~~-~D~v 271 (372)
T 1fp1_D 209 GIS--TLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP--------L-SGIEHVGGDMFASV-----PQ-GDAM 271 (372)
T ss_dssp TCS--EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC--------C-TTEEEEECCTTTCC-----CC-EEEE
T ss_pred CCC--EEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh--------c-CCCEEEeCCcccCC-----CC-CCEE
Confidence 345 99999999999999988763 237888899333322211 1 34788888775421 22 9999
Q ss_pred EEcccCCCcccHH--HHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIEESAA--QLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~~~--~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++..++++..+.. .++++++++|+|||++++.+.
T Consensus 272 ~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 272 ILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9999998777666 999999999999999999854
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.2e-09 Score=91.94 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=71.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++. +..+++++|++.++..++. . ..+.+...|+.. . . ..||+|++..+
T Consensus 196 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~-~~v~~~~~d~~~-~----~-~~~D~v~~~~v 260 (358)
T 1zg3_A 196 SLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG--------N-ENLNFVGGDMFK-S----I-PSADAVLLKWV 260 (358)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC--------C-SSEEEEECCTTT-C----C-CCCSEEEEESC
T ss_pred EEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc--------C-CCcEEEeCccCC-C----C-CCceEEEEccc
Confidence 9999999999999998876 2238999999543322111 1 237888877654 2 1 24999999999
Q ss_pred CCCcccHH--HHHHHHHHhhCC---CcEEEEEEee
Q 026858 149 VYIEESAA--QLVRAMEALVAD---DGVVLLGYQL 178 (232)
Q Consensus 149 ~~~~~~~~--~~l~~l~~~l~p---gG~l~i~~~~ 178 (232)
+++..+.. .++++++++|+| ||++++.+..
T Consensus 261 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 261 LHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp GGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 98777655 999999999999 9999997643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-09 Score=90.25 Aligned_cols=119 Identities=8% Similarity=-0.084 Sum_probs=71.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcc----hh-HHHHHHHHHHhcCCCCCCceEEEEe-ecCCCcccccCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDI----SP-VMPALKHNLKRNKPVLNKSLKTSVL-YWNNQDQINALK 137 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~----s~-~~~~~~~n~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~ 137 (232)
.++. +|||||||+|..+..+++. .+|+++|+ ++ .+... ..+.. -...+.+... |..... .
T Consensus 81 ~~g~--~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~D~~~l~-----~ 146 (305)
T 2p41_A 81 TPEG--KVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPI----PMSTY-GWNLVRLQSGVDVFFIP-----P 146 (305)
T ss_dssp CCCE--EEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCC----CCCST-TGGGEEEECSCCTTTSC-----C
T ss_pred CCCC--EEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHH----Hhhhc-CCCCeEEEeccccccCC-----c
Confidence 3667 9999999999999999987 38999999 33 22100 00000 0123555554 433221 3
Q ss_pred CCccEEEEcccCC---CcccHH---HHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCce
Q 026858 138 PPFDLVIAADVVY---IEESAA---QLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 138 ~~fD~Ii~~~~~~---~~~~~~---~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~ 196 (232)
.+||+|++...+. +..+.. .++..+.++|+|||.+++............++..+...|.
T Consensus 147 ~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~~f~ 211 (305)
T 2p41_A 147 ERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKHG 211 (305)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHHC
T ss_pred CCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHcC
Confidence 5799999854432 111111 4778889999999988875432221223455555554453
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-09 Score=92.34 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=72.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.. +|||||||+|..+..+++. +..+++++|++.++..++. ..++.+...|+.... +.. |+|
T Consensus 201 ~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~-----p~~-D~v 263 (364)
T 3p9c_A 201 GLG--TLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ---------FPGVTHVGGDMFKEV-----PSG-DTI 263 (364)
T ss_dssp TCS--EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC---------CTTEEEEECCTTTCC-----CCC-SEE
T ss_pred CCC--EEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh---------cCCeEEEeCCcCCCC-----CCC-CEE
Confidence 345 9999999999999988876 3338999999443322211 145788888876522 123 999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++|++ ++...++++++++|+|||++++.+..
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 999999855 45678999999999999999998643
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.8e-09 Score=89.59 Aligned_cols=94 Identities=13% Similarity=0.093 Sum_probs=71.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++. +..+++++|+..++..++. . ..+.+...|+.... + .||+|++..+
T Consensus 191 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~-~~v~~~~~d~~~~~-----p-~~D~v~~~~~ 255 (352)
T 1fp2_A 191 SIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG--------S-NNLTYVGGDMFTSI-----P-NADAVLLKYI 255 (352)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC--------B-TTEEEEECCTTTCC-----C-CCSEEEEESC
T ss_pred eEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc--------C-CCcEEEeccccCCC-----C-CccEEEeehh
Confidence 9999999999999988876 2238999999323322211 1 23788887764421 2 3999999999
Q ss_pred CCCcccHH--HHHHHHHHhhCC---CcEEEEEEee
Q 026858 149 VYIEESAA--QLVRAMEALVAD---DGVVLLGYQL 178 (232)
Q Consensus 149 ~~~~~~~~--~~l~~l~~~l~p---gG~l~i~~~~ 178 (232)
+++..+.. .++++++++|+| ||++++.+..
T Consensus 256 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 256 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 98777666 999999999999 9999998654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=7.9e-10 Score=95.43 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=69.3
Q ss_pred cEEEeCcc------ccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc---ccCCC
Q 026858 70 RAIELGAG------CGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI---NALKP 138 (232)
Q Consensus 70 ~VLElGcG------tG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~~ 138 (232)
+||||||| +|..++.+++. +..+|+++|+|+.+. . ...++.+...|..+.... ....+
T Consensus 219 rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~----~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 219 RVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------V----DELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp EEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------G----CBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred EEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------h----cCCCcEEEEecccccchhhhhhcccC
Confidence 99999999 66666666543 334999999999431 1 124578888877653311 00146
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+||+|++. ..+...+...+++.+.++|||||.+++.+.
T Consensus 288 sFDlVisd-gsH~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDD-GSHINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEEC-SCCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEEC-CcccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 89999975 446667788999999999999999999743
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.4e-09 Score=91.84 Aligned_cols=131 Identities=19% Similarity=0.104 Sum_probs=87.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..++.. +..+++++|+++ .+..++.|+...+. .++.+...|....... ...+.||
T Consensus 259 ~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~-~~~~~fD 332 (450)
T 2yxl_A 259 PGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKAPEI-IGEEVAD 332 (450)
T ss_dssp TTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCCSSS-SCSSCEE
T ss_pred CcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhcchh-hccCCCC
Confidence 567 9999999999999988875 324999999998 47788888877652 2366766665543210 1125799
Q ss_pred EEEEcccCCCc------cc---------H-------HHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc--Cce
Q 026858 142 LVIAADVVYIE------ES---------A-------AQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE--VFL 196 (232)
Q Consensus 142 ~Ii~~~~~~~~------~~---------~-------~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~--~f~ 196 (232)
+|++..+.... .+ + ..++..+.++|+|||++++++..-.+.. .+.+...+.+ +|.
T Consensus 333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~ 412 (450)
T 2yxl_A 333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFK 412 (450)
T ss_dssp EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCE
T ss_pred EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 99984433211 11 1 5788999999999999999876554332 2333344442 576
Q ss_pred EEEec
Q 026858 197 IEKVP 201 (232)
Q Consensus 197 ~~~~~ 201 (232)
...+.
T Consensus 413 ~~~~~ 417 (450)
T 2yxl_A 413 LVPLK 417 (450)
T ss_dssp ECCCC
T ss_pred Eeecc
Confidence 65543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=92.45 Aligned_cols=127 Identities=14% Similarity=0.087 Sum_probs=85.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+|||+|..+..++... ..+++++|+++ .+..++.|+..++.. +.+...|....... ...++||+
T Consensus 246 ~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~----~~~~~~D~~~~~~~-~~~~~fD~ 318 (429)
T 1sqg_A 246 NGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK----ATVKQGDGRYPSQW-CGEQQFDR 318 (429)
T ss_dssp TTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC----CEEEECCTTCTHHH-HTTCCEEE
T ss_pred CcC--eEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC----eEEEeCchhhchhh-cccCCCCE
Confidence 567 99999999999999998763 24999999998 578888888876532 46666665543210 12357999
Q ss_pred EEEcccCCCc------cc---------H-------HHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc--CceE
Q 026858 143 VIAADVVYIE------ES---------A-------AQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE--VFLI 197 (232)
Q Consensus 143 Ii~~~~~~~~------~~---------~-------~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~--~f~~ 197 (232)
|++..+.... .+ + ..++..+.++|+|||++++++..-.+.. .......+.. +|..
T Consensus 319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~ 398 (429)
T 1sqg_A 319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL 398 (429)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEE
Confidence 9985543211 11 1 4778899999999999999875443322 2333334432 4654
Q ss_pred E
Q 026858 198 E 198 (232)
Q Consensus 198 ~ 198 (232)
.
T Consensus 399 ~ 399 (429)
T 1sqg_A 399 C 399 (429)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=9.1e-10 Score=95.37 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=77.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCc-eEEEEeecCCCcccc-cCCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKS-LKTSVLYWNNQDQIN-ALKPP 139 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~-i~~~~~d~~~~~~~~-~~~~~ 139 (232)
++. +|||++||+|..++.+++. |+.+|+++|+++ +++.+++|++.|+ +..+ +.+...|..... . ...+.
T Consensus 52 ~g~--~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng--l~~~~v~v~~~Da~~~l--~~~~~~~ 125 (392)
T 3axs_A 52 RPV--KVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN--IPEDRYEIHGMEANFFL--RKEWGFG 125 (392)
T ss_dssp SCE--EEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHH--HSCCSSC
T ss_pred CCC--EEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCceEEEEeCCHHHHH--HHhhCCC
Confidence 456 9999999999999999885 556999999998 6889999999987 4334 666666543221 1 12357
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++.+ | .....++..+.++|++||.+++..
T Consensus 126 fD~V~lDP--~--g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 126 FDYVDLDP--F--GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EEEEEECC--S--SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEECC--C--cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 99999754 3 223568888999999999888865
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-08 Score=83.26 Aligned_cols=122 Identities=9% Similarity=0.091 Sum_probs=76.6
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc-CCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRN-KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|.++..+++.+ .+++++|+++. +..++++.... ......++.+...|.... . ++||+|++..
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~-----~-~~fD~Ii~d~ 147 (262)
T 2cmg_A 75 EVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-----I-KKYDLIFCLQ 147 (262)
T ss_dssp EEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC-----C-CCEEEEEESS
T ss_pred EEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH-----H-hhCCEEEECC
Confidence 99999999999998887767 69999999984 44444332110 000123455554433211 1 6799999852
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceEEEecCC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
.+...+++.+.++|+|||.+++..... .........+.+...|........
T Consensus 148 -----~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~~ 200 (262)
T 2cmg_A 148 -----EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPFVA 200 (262)
T ss_dssp -----CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEECC
T ss_pred -----CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEEEE
Confidence 122348999999999999999864332 212234445555666765544433
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-08 Score=91.38 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=105.0
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceee-------chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVW-------PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGA 80 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W-------~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~ 80 (232)
.|.+.+.+...++.-+.++.+--.+-| |-...|+..+..... ..++. .|||.+||+|.
T Consensus 139 ~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~~-------------~~~~~--~llDP~CGSGt 203 (703)
T 3v97_A 139 RVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRSG-------------WQPGT--PLLDPMCGSGT 203 (703)
T ss_dssp EEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHTT-------------CCTTS--CEEETTCTTSH
T ss_pred EEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhhC-------------CCCCC--eEEecCCCCcH
Confidence 788888898888888866433333334 233456666666554 34566 89999999999
Q ss_pred HHHHHHHhC-------------------------------------------CCcEEEEcchh-HHHHHHHHHHhcCCCC
Q 026858 81 AGMAFYLLG-------------------------------------------LADIVLTDISP-VMPALKHNLKRNKPVL 116 (232)
Q Consensus 81 ~s~~la~~~-------------------------------------------~~~v~~~D~s~-~~~~~~~n~~~~~~~~ 116 (232)
+.+.+|..+ ..+++|+|+++ ++..++.|+..++ +
T Consensus 204 ~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~ag--v 281 (703)
T 3v97_A 204 LLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAG--I 281 (703)
T ss_dssp HHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcC--C
Confidence 998877642 03799999999 6888899998877 4
Q ss_pred CCceEEEEeecCCCcccccCCCCccEEEEcccCCC----cccHHHHHHHHHHhh---CCCcEEEEEE
Q 026858 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYI----EESAAQLVRAMEALV---ADDGVVLLGY 176 (232)
Q Consensus 117 ~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l---~pgG~l~i~~ 176 (232)
...+.+...|+..... +...+.||+|++++++.. ...+..+.+.+.+.+ .|||.+++..
T Consensus 282 ~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 282 GELITFEVKDVAQLTN-PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFS 347 (703)
T ss_dssp GGGEEEEECCGGGCCC-SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCceEEEECChhhCcc-ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 4567888887765431 111237999999887642 234566666666555 4799998874
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=82.34 Aligned_cols=110 Identities=10% Similarity=0.050 Sum_probs=75.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+ +.+|+|+. +..++++... .+.+...|..+.......+++||+
T Consensus 11 ~~g~--~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-------~~~~~~~d~~~~~~~~~~~~~fD~ 66 (176)
T 2ld4_A 11 SAGQ--FVAVVWDKS---------------SPVEALKGLVDKLQALTGN-------EGRVSVENIKQLLQSAHKESSFDI 66 (176)
T ss_dssp CTTS--EEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-------TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred CCCC--EEEEecCCc---------------eeeeCCHHHHHHHHHhccc-------CcEEEEechhcCccccCCCCCEeE
Confidence 3677 999999986 12899884 4444443211 257777777644311113568999
Q ss_pred EEEcccCCCc-ccHHHHHHHHHHhhCCCcEEEEEEeecC-------hhHHHHHHHHHh-cCceEE
Q 026858 143 VIAADVVYIE-ESAAQLVRAMEALVADDGVVLLGYQLRS-------PEAHKLFWEMCA-EVFLIE 198 (232)
Q Consensus 143 Ii~~~~~~~~-~~~~~~l~~l~~~l~pgG~l~i~~~~r~-------~~~~~~~~~~~~-~~f~~~ 198 (232)
|+++.++++. .+...++++++++|+|||++++..+... ......+.+.+. .+| +.
T Consensus 67 V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 67 ILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp EEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred EEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 9999999887 7889999999999999999999654221 112455666665 488 54
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-09 Score=87.53 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=54.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|.++..++..+. +|+++|+++ ++..++.+...+. . .++.+...|+.... .+.||
T Consensus 40 ~~~~~--~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~--~-~~v~~~~~D~~~~~-----~~~~D 108 (299)
T 2h1r_A 40 IKSSD--IVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEG--Y-NNLEVYEGDAIKTV-----FPKFD 108 (299)
T ss_dssp CCTTC--EEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTT--C-CCEEC----CCSSC-----CCCCS
T ss_pred CCCcC--EEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcC--C-CceEEEECchhhCC-----cccCC
Confidence 33567 999999999999999998876 999999998 5667777765543 1 34666666654432 24799
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
+|+++.+.+
T Consensus 109 ~Vv~n~py~ 117 (299)
T 2h1r_A 109 VCTANIPYK 117 (299)
T ss_dssp EEEEECCGG
T ss_pred EEEEcCCcc
Confidence 999876554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=92.39 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=75.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCC-------------CCCCceEEEEeecCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKP-------------VLNKSLKTSVLYWNN 129 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~-------------~~~~~i~~~~~d~~~ 129 (232)
++. +|||+|||+|..++.+++. +..+|+++|+++ ++..+++|++.|.. .+. ++.+...|...
T Consensus 47 ~~~--~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~ 123 (378)
T 2dul_A 47 NPK--IVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANR 123 (378)
T ss_dssp CCS--EEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHH
T ss_pred CCC--EEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHH
Confidence 346 9999999999999999887 555899999998 68899999998820 121 25666655433
Q ss_pred CcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 130 QDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 130 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
... ...+.||+|++ ++.+. ...++..+.+.+++||.+++..
T Consensus 124 ~~~--~~~~~fD~I~l-DP~~~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 124 LMA--ERHRYFHFIDL-DPFGS---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHH--HSTTCEEEEEE-CCSSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHH--hccCCCCEEEe-CCCCC---HHHHHHHHHHhcCCCCEEEEEe
Confidence 211 11357999996 55432 3578888899999999888764
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-08 Score=82.62 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=72.6
Q ss_pred cEEEeCccc---cHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCCCc
Q 026858 70 RAIELGAGC---GAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKPPF 140 (232)
Q Consensus 70 ~VLElGcGt---G~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~~f 140 (232)
+|||||||+ |.+...+.+. ++ +|+++|.|+. +..++..+... -..++.+...|+.+... . +...+.|
T Consensus 81 q~LDLGcG~pT~~~~~~la~~~~P~a-rVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 81 QFLDIGTGIPTSPNLHEIAQSVAPES-RVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp EEEEESCCSCCSSCHHHHHHHHCTTC-EEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred EEEEeCCCCCcccHHHHHHHHHCCCC-EEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChhhhhccccccccc
Confidence 899999997 4444433333 45 9999999995 44554443322 12457888888876421 0 0001234
Q ss_pred c-----EEEEcccCCCccc---HHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 141 D-----LVIAADVVYIEES---AAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 141 D-----~Ii~~~~~~~~~~---~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
| .|+++.++++..+ ...+++.+.+.|+|||++++++....
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 4 5778888887665 57899999999999999999976654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=7.6e-09 Score=94.30 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=73.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh---CCC--cEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL---GLA--DIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~---~~~--~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
.... .|||+|||+|.++..+++. +.. +|++++.|++...+++....|+ +.++|++...+..... .++
T Consensus 356 ~~~~--vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~--~~dkVtVI~gd~eev~----LPE 427 (637)
T 4gqb_A 356 TNVQ--VLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEE--WGSQVTVVSSDMREWV----APE 427 (637)
T ss_dssp TCEE--EEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHT--TGGGEEEEESCTTTCC----CSS
T ss_pred CCCc--EEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhcc--CCCeEEEEeCcceecc----CCc
Confidence 3445 8999999999996554443 322 6899999997666777777776 6678999998887654 356
Q ss_pred CccEEEE---cccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 139 PFDLVIA---ADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 139 ~fD~Ii~---~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
+.|+||+ ...+.+. .....+....+.|||||.++
T Consensus 428 KVDIIVSEwMG~fLl~E-~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 428 KADIIVSELLGSFADNE-LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CEEEEECCCCBTTBGGG-CHHHHHHHHGGGEEEEEEEE
T ss_pred ccCEEEEEcCccccccc-CCHHHHHHHHHhcCCCcEEc
Confidence 8999996 2222333 34467888889999999843
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=8.9e-08 Score=86.37 Aligned_cols=155 Identities=8% Similarity=-0.083 Sum_probs=92.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh----C---------------CCcEEEEcchh-HHHHHHHHHHhcCCCCC--CceEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL----G---------------LADIVLTDISP-VMPALKHNLKRNKPVLN--KSLKT 122 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~----~---------------~~~v~~~D~s~-~~~~~~~n~~~~~~~~~--~~i~~ 122 (232)
++. +|||.+||||.+.+.+++. + ..+++|+|+++ ++..++.|+...+.... ..+.+
T Consensus 169 ~~~--~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I 246 (541)
T 2ar0_A 169 PRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAI 246 (541)
T ss_dssp TTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSE
T ss_pred CCC--eEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCe
Confidence 456 9999999999988777643 1 12799999998 56677777766542110 01233
Q ss_pred EEeecCCCcccccCCCCccEEEEcccCCCcc--------------cHHHHHHHHHHhhCCCcEEEEEEeec---ChhHHH
Q 026858 123 SVLYWNNQDQINALKPPFDLVIAADVVYIEE--------------SAAQLVRAMEALVADDGVVLLGYQLR---SPEAHK 185 (232)
Q Consensus 123 ~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------~~~~~l~~l~~~l~pgG~l~i~~~~r---~~~~~~ 185 (232)
...|.-... ....++||+|++++++.... ....++..+.+.|+|||++.++.+.. ......
T Consensus 247 ~~gDtL~~~--~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~ 324 (541)
T 2ar0_A 247 RLGNTLGSD--GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGT 324 (541)
T ss_dssp EESCTTSHH--HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHH
T ss_pred EeCCCcccc--cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHH
Confidence 333322111 11235799999988875321 12368899999999999999887533 112244
Q ss_pred HHHHHHhcCceEEEecCCCCCCCCCC--CceEEEEEEecCc
Q 026858 186 LFWEMCAEVFLIEKVPHEDLHPDYGY--EETDVYILRKKKK 224 (232)
Q Consensus 186 ~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 224 (232)
.+.+.+.+.+.+..+-.... ..|.. -...|+.+++.+.
T Consensus 325 ~iR~~L~~~~~l~~ii~Lp~-~~F~~t~v~t~Ilvl~k~~~ 364 (541)
T 2ar0_A 325 DIRRDLMDKCHLHTILRLPT-GIFYAQGVKTNVLFFTKGTV 364 (541)
T ss_dssp HHHHHHHHHEEEEEEEECCS-SCSSSCSCCEEEEEEEEBCS
T ss_pred HHHHHHhhcCCEEEEEEcCc-CcccCCCCcEEEEEEECCCC
Confidence 56665555455444432211 12322 2345677766543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.3e-08 Score=81.53 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=71.7
Q ss_pred ccCCCCCcEEEeCc------cccHHHHHHHHh-C-CCcEEEEcchhHHHHHHHHHHhcCCCCCCceEE-EEeecCCCccc
Q 026858 63 DFHSTRRRAIELGA------GCGAAGMAFYLL-G-LADIVLTDISPVMPALKHNLKRNKPVLNKSLKT-SVLYWNNQDQI 133 (232)
Q Consensus 63 ~~~~~~~~VLElGc------GtG~~s~~la~~-~-~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~-~~~d~~~~~~~ 133 (232)
..++. +|||||| |+|. ..+++. + ..+|+++|+++. + .++.+ ...|+....
T Consensus 61 l~~g~--~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v--------~~v~~~i~gD~~~~~-- 119 (290)
T 2xyq_A 61 VPYNM--RVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------V--------SDADSTLIGDCATVH-- 119 (290)
T ss_dssp CCTTC--EEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------B--------CSSSEEEESCGGGCC--
T ss_pred CCCCC--EEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------C--------CCCEEEEECccccCC--
Confidence 34677 9999999 5566 333433 4 249999999995 0 12456 666665432
Q ss_pred ccCCCCccEEEEcccCCC-----------cccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhc-CceEE
Q 026858 134 NALKPPFDLVIAADVVYI-----------EESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAE-VFLIE 198 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~-~f~~~ 198 (232)
..++||+|+++..... ...+..+++.+.++|+|||.+++...... . ...+.+.++. +|...
T Consensus 120 --~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-~-~~~l~~~l~~~GF~~v 192 (290)
T 2xyq_A 120 --TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-W-NADLYKLMGHFSWWTA 192 (290)
T ss_dssp --CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-C-CHHHHHHHTTEEEEEE
T ss_pred --ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-C-HHHHHHHHHHcCCcEE
Confidence 1357999998533211 12356899999999999999998654332 1 2356666665 47533
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-07 Score=78.39 Aligned_cols=130 Identities=8% Similarity=0.002 Sum_probs=81.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+|||+|..+..+|.. +..+|+++|+++ .+..+++|+++++. .++.+...|+............||
T Consensus 102 ~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 102 PGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDPRYHEVH 176 (309)
T ss_dssp TTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCGGGTTEE
T ss_pred CCC--EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCChHhcCccccccCCCC
Confidence 567 9999999999999988875 345999999998 57888888887762 246777777654332110114699
Q ss_pred EEEEcccCCC-----------------cccHH-------HHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc--C
Q 026858 142 LVIAADVVYI-----------------EESAA-------QLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE--V 194 (232)
Q Consensus 142 ~Ii~~~~~~~-----------------~~~~~-------~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~--~ 194 (232)
.|++..+... .+.+. .++..+.++++ ||++++++-.-.+.. .+.....+++ +
T Consensus 177 ~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~~ 255 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNPG 255 (309)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTSTT
T ss_pred EEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCCC
Confidence 9998443311 01211 34555555666 898888764443322 3334444443 3
Q ss_pred -ceEEEe
Q 026858 195 -FLIEKV 200 (232)
Q Consensus 195 -f~~~~~ 200 (232)
|....+
T Consensus 256 ~~~~~~~ 262 (309)
T 2b9e_A 256 AFRLAPA 262 (309)
T ss_dssp TEEECCC
T ss_pred cEEEecc
Confidence 665544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.7e-08 Score=79.92 Aligned_cols=77 Identities=14% Similarity=0.033 Sum_probs=57.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..+++.+. +|+++|+++ ++..++.+... . .++.+...|+..... ....||
T Consensus 48 ~~~~~--~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~-~----~~v~vi~gD~l~~~~---~~~~fD 116 (295)
T 3gru_A 48 LTKDD--VVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKEL-Y----NNIEIIWGDALKVDL---NKLDFN 116 (295)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHH-C----SSEEEEESCTTTSCG---GGSCCS
T ss_pred CCCcC--EEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhcc-C----CCeEEEECchhhCCc---ccCCcc
Confidence 44667 999999999999999998875 999999998 46666666542 1 346778877765431 224699
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.|+++.+++
T Consensus 117 ~Iv~NlPy~ 125 (295)
T 3gru_A 117 KVVANLPYQ 125 (295)
T ss_dssp EEEEECCGG
T ss_pred EEEEeCccc
Confidence 999876554
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.7e-08 Score=85.56 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=69.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..++.+++.+. +|+++|+|+ ++..++.|+..+...+ .++.+...|+...... ...++||+|
T Consensus 93 ~g~--~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~-~~~~~fDvV 167 (410)
T 3ll7_A 93 EGT--KVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPL-IKTFHPDYI 167 (410)
T ss_dssp TTC--EEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHH-HHHHCCSEE
T ss_pred CCC--EEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhh-ccCCCceEE
Confidence 467 999999999999999998876 999999999 5778888888761113 4578888776543211 012479999
Q ss_pred EEcccCCC--------cccHHHHHHHHHHhhCC-CcEEEE
Q 026858 144 IAADVVYI--------EESAAQLVRAMEALVAD-DGVVLL 174 (232)
Q Consensus 144 i~~~~~~~--------~~~~~~~l~~l~~~l~p-gG~l~i 174 (232)
++.++... .++..+-+..+...+.. ...+++
T Consensus 168 ~lDPPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~v 207 (410)
T 3ll7_A 168 YVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILA 207 (410)
T ss_dssp EECCEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEE
T ss_pred EECCCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEE
Confidence 98655432 22334445555655443 334444
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-09 Score=88.42 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=49.7
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||+|||+|.++..++..+. +++++|+++. +..++++.. ...++.+...|+.+... . ..++| .
T Consensus 28 ~~~~--~VLDiG~G~G~~~~~l~~~~~-~v~~id~~~~~~~~a~~~~~-----~~~~v~~~~~D~~~~~~-~-~~~~f-~ 96 (245)
T 1yub_A 28 KETD--TVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLK-----LNTRVTLIHQDILQFQF-P-NKQRY-K 96 (245)
T ss_dssp CSSE--EEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTT-----TCSEEEECCSCCTTTTC-C-CSSEE-E
T ss_pred CCCC--EEEEEeCCCCHHHHHHHHhCC-eEEEEECCHHHHHHHHHHhc-----cCCceEEEECChhhcCc-c-cCCCc-E
Confidence 3566 999999999999999998885 9999999983 333333322 12345666666554331 0 02468 6
Q ss_pred EEEcccCC
Q 026858 143 VIAADVVY 150 (232)
Q Consensus 143 Ii~~~~~~ 150 (232)
|+++.+.+
T Consensus 97 vv~n~Py~ 104 (245)
T 1yub_A 97 IVGNIPYH 104 (245)
T ss_dssp EEEECCSS
T ss_pred EEEeCCcc
Confidence 77665554
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=80.94 Aligned_cols=155 Identities=16% Similarity=0.066 Sum_probs=92.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-C---CCcEEEEcchh-HHHHH--HHHHHhcCCCC-CCceEEEEeecCCCcccccC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-G---LADIVLTDISP-VMPAL--KHNLKRNKPVL-NKSLKTSVLYWNNQDQINAL 136 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~---~~~v~~~D~s~-~~~~~--~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~ 136 (232)
++. +|||.|||+|.+.+.+++. + ..+++|+|+++ ++..+ +.|+..|.... .........++.... ...
T Consensus 321 ~g~--rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~--~~~ 396 (878)
T 3s1s_A 321 EDE--VISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLN--PED 396 (878)
T ss_dssp TTC--EEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCC--GGG
T ss_pred CCC--EEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccc--ccc
Confidence 455 9999999999999888765 2 23899999998 45555 45544432110 011122222222111 112
Q ss_pred CCCccEEEEcccCCCc-c----------------------------cHHHHHHHHHHhhCCCcEEEEEEeecCh----hH
Q 026858 137 KPPFDLVIAADVVYIE-E----------------------------SAAQLVRAMEALVADDGVVLLGYQLRSP----EA 183 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~-~----------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~----~~ 183 (232)
.++||+||+++++... . ....+++.+.++|++||++.++.+..-. ..
T Consensus 397 ~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~ 476 (878)
T 3s1s_A 397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNE 476 (878)
T ss_dssp GTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHH
T ss_pred cCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChH
Confidence 3579999998887321 1 1234677888999999999998764321 23
Q ss_pred HHHHHHHHhcCceEEEecCCCCCCCCCC--CceEEEEEEecC
Q 026858 184 HKLFWEMCAEVFLIEKVPHEDLHPDYGY--EETDVYILRKKK 223 (232)
Q Consensus 184 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 223 (232)
...+.+.+.+.+.+..+-.......|.. ....++.+++.+
T Consensus 477 ~kkLRk~LLe~~~I~aIIdLP~~~~F~~asv~T~ILIlrK~k 518 (878)
T 3s1s_A 477 SKAFREFLVGNFGLEHIFLYPREGLFEEVIKDTVVFVGRKGS 518 (878)
T ss_dssp HHHHHHHHTTTTCEEEEEECCBCCSSCSCBCCEEEEEEETTC
T ss_pred HHHHHHHHHhCCCeEEEEECCCccccCCCCCcEEEEEEEcCC
Confidence 5667777776666665544332234432 234566666654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=77.96 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=54.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~f 140 (232)
..++. +|||||||+|.++..++..+. +|+++|+++. +..++++... ..++.+...|+...+..... .+.|
T Consensus 27 ~~~~~--~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~~~~~~~~~~ 98 (255)
T 3tqs_A 27 PQKTD--TLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQFDFSSVKTDKPL 98 (255)
T ss_dssp CCTTC--EEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTTCCGGGSCCSSCE
T ss_pred CCCcC--EEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHhCCHHHhccCCCe
Confidence 34567 999999999999999998875 9999999994 5566555542 23568888877665421111 2468
Q ss_pred cEEEEcccCC
Q 026858 141 DLVIAADVVY 150 (232)
Q Consensus 141 D~Ii~~~~~~ 150 (232)
| |+++.+.+
T Consensus 99 ~-vv~NlPY~ 107 (255)
T 3tqs_A 99 R-VVGNLPYN 107 (255)
T ss_dssp E-EEEECCHH
T ss_pred E-EEecCCcc
Confidence 8 66655443
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.3e-08 Score=80.31 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-------H-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-------V-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL 136 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-------~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 136 (232)
++. +|||+|||+|..++.+|+.+. +|+++|+++ . +..++.|...++ +..++.+...|...... ...
T Consensus 83 ~~~--~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~--~~~ri~~~~~d~~~~l~-~~~ 156 (258)
T 2r6z_A 83 AHP--TVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQD--TAARINLHFGNAAEQMP-ALV 156 (258)
T ss_dssp GCC--CEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHH--HHTTEEEEESCHHHHHH-HHH
T ss_pred CcC--eEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhC--CccCeEEEECCHHHHHH-hhh
Confidence 456 899999999999999999887 999999998 3 334445554443 22346777776543211 001
Q ss_pred C--CCccEEEEcccCC
Q 026858 137 K--PPFDLVIAADVVY 150 (232)
Q Consensus 137 ~--~~fD~Ii~~~~~~ 150 (232)
+ ++||+|++.+++.
T Consensus 157 ~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 157 KTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHCCCSEEEECCCC-
T ss_pred ccCCCccEEEECCCCC
Confidence 1 5799999866554
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-06 Score=77.35 Aligned_cols=155 Identities=12% Similarity=-0.008 Sum_probs=94.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh----CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL----GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
++. +|+|.+||||.+.+.+++. +..+++|+|+++ +...++.|+...+... ..+.+...|.-...-......+
T Consensus 221 ~~~--~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~-~~~~I~~gDtL~~d~p~~~~~~ 297 (542)
T 3lkd_A 221 QGF--TLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI-ENQFLHNADTLDEDWPTQEPTN 297 (542)
T ss_dssp TTC--EEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG-GGEEEEESCTTTSCSCCSSCCC
T ss_pred CCC--EEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc-CccceEecceeccccccccccc
Confidence 445 9999999999988777654 234899999999 4677777877665210 2345555543322100122457
Q ss_pred ccEEEEcccCCCcc--------c---------------HHHHHHHHHHhhC-CCcEEEEEEeecC---hhHHHHHHHHHh
Q 026858 140 FDLVIAADVVYIEE--------S---------------AAQLVRAMEALVA-DDGVVLLGYQLRS---PEAHKLFWEMCA 192 (232)
Q Consensus 140 fD~Ii~~~~~~~~~--------~---------------~~~~l~~l~~~l~-pgG~l~i~~~~r~---~~~~~~~~~~~~ 192 (232)
||+|++++|+.... + --.++..+.+.|+ +||++.++.+..- ......+.+.+-
T Consensus 298 fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Ll 377 (542)
T 3lkd_A 298 FDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALL 377 (542)
T ss_dssp BSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHH
T ss_pred ccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHH
Confidence 99999988874110 0 1237889999999 9999988875331 123456666665
Q ss_pred cCceEEEecCCCCCCCCCCC--ceEEEEEEecC
Q 026858 193 EVFLIEKVPHEDLHPDYGYE--ETDVYILRKKK 223 (232)
Q Consensus 193 ~~f~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 223 (232)
+.+.+..+-.-.. ..|... ...|+.+++.+
T Consensus 378 e~~~l~~II~LP~-~lF~~t~i~t~Ilvl~K~k 409 (542)
T 3lkd_A 378 EEGAIDTVIGLPA-NIFFNTSIPTTVIILKKNR 409 (542)
T ss_dssp HTTCEEEEEECCS-SCSSSCCCCEEEEEECSSC
T ss_pred hCCceeEEEEccc-cccCCCCCcEEEEEEecCC
Confidence 5555544432211 223222 34566666654
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=5e-07 Score=73.22 Aligned_cols=99 Identities=10% Similarity=0.058 Sum_probs=59.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..++..+. +++++|+++. +..++++... ..++.+...|+..... . ....|
T Consensus 28 ~~~~~--~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~-~-~~~~~- 96 (244)
T 1qam_A 28 LNEHD--NIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKF-P-KNQSY- 96 (244)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCC-C-SSCCC-
T ss_pred CCCCC--EEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhCCc-c-cCCCe-
Confidence 34667 999999999999999998885 9999999984 5555554432 1346777776654331 1 01234
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.|+++. .|+.. ..++..+......++.+++.
T Consensus 97 ~vv~nl-Py~~~--~~~l~~~l~~~~~~~~~lm~ 127 (244)
T 1qam_A 97 KIFGNI-PYNIS--TDIIRKIVFDSIADEIYLIV 127 (244)
T ss_dssp EEEEEC-CGGGH--HHHHHHHHHSCCCSEEEEEE
T ss_pred EEEEeC-CcccC--HHHHHHHHhcCCCCeEEEEE
Confidence 455544 44332 23444444433333444433
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.2e-06 Score=68.39 Aligned_cols=169 Identities=12% Similarity=-0.026 Sum_probs=96.9
Q ss_pred ccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHH
Q 026858 29 VGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKH 107 (232)
Q Consensus 29 ~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~ 107 (232)
+|.-.=.+++-|.+...+ .. ..++. +|||||||+|..+..++.. ++..+++.|+...+. .
T Consensus 52 ~~~YrSRaA~KL~ei~ek-~~-------------l~~~~--~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~---~ 112 (277)
T 3evf_A 52 TGVAVSRGTAKLRWFHER-GY-------------VKLEG--RVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH---E 112 (277)
T ss_dssp SCBCSSTHHHHHHHHHHT-TS-------------SCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC---C
T ss_pred CCCccccHHHHHHHHHHh-CC-------------CCCCC--EEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCc---c
Confidence 355566678888888877 33 44667 9999999999999988865 666788888874110 0
Q ss_pred HHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc----cH---HHHHHHHHHhhCCC-cEEEEEEeec
Q 026858 108 NLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE----SA---AQLVRAMEALVADD-GVVLLGYQLR 179 (232)
Q Consensus 108 n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~----~~---~~~l~~l~~~l~pg-G~l~i~~~~r 179 (232)
.... .......+....-+... .....+.||+|++.-... .. +. -.+++.+.++|+|| |.+++-....
T Consensus 113 ~pi~-~~~~g~~ii~~~~~~dv---~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~p 187 (277)
T 3evf_A 113 KPMN-VQSLGWNIITFKDKTDI---HRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAP 187 (277)
T ss_dssp CCCC-CCBTTGGGEEEECSCCT---TTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred cccc-cCcCCCCeEEEecccee---hhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 0000 00000022222222211 112245799999854333 11 11 12467788999999 9988843221
Q ss_pred ChhHHHHHHHHHhcCceEEEecCCCCCCCCCCCceEEEEEEecCcc
Q 026858 180 SPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKKE 225 (232)
Q Consensus 180 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 225 (232)
+......+.+.++..|.-..+.... =+.....+|.+.+.+.+
T Consensus 188 yg~~~~~l~~~lk~~F~~V~~~KPa----SR~~S~E~Y~V~~~r~n 229 (277)
T 3evf_A 188 YMPDVLEKLELLQRRFGGTVIRNPL----SRNSTHEMYYVSGARSN 229 (277)
T ss_dssp TSHHHHHHHHHHHHHHCCEEECCTT----SCTTCCCEEEESSCCCC
T ss_pred CCccHHHHHHHHHHhcCCEEEEeCC----CCCCCCceEEEEecCCC
Confidence 1244667777787777644443221 13445566666665443
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-06 Score=77.36 Aligned_cols=150 Identities=12% Similarity=0.015 Sum_probs=90.1
Q ss_pred cEEEeCccccHHHHHHHHh--------C--------CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc
Q 026858 70 RAIELGAGCGAAGMAFYLL--------G--------LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ 132 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~--------~--------~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~ 132 (232)
+|||.+||||.+.+.+++. . ...++|+|+++ +...++.|+...+.. ..+.....|.-...
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~--~~i~i~~gDtL~~~- 323 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID--FNFGKKNADSFLDD- 323 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC--CBCCSSSCCTTTSC-
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC--cccceeccchhcCc-
Confidence 8999999999877665432 1 23899999999 567777787766522 22211222211111
Q ss_pred cccCCCCccEEEEcccCCCcc-----------------------------cHHHHHHHHHHhhCCCcEEEEEEeec----
Q 026858 133 INALKPPFDLVIAADVVYIEE-----------------------------SAAQLVRAMEALVADDGVVLLGYQLR---- 179 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~~-----------------------------~~~~~l~~l~~~l~pgG~l~i~~~~r---- 179 (232)
.....+||+|++++++.... .--.++..+.+.|+|||++.++.+..
T Consensus 324 -~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~ 402 (544)
T 3khk_A 324 -QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSS 402 (544)
T ss_dssp -SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHC
T ss_pred -ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhc
Confidence 11235799999988875310 01257899999999999988886532
Q ss_pred ChhHHHHHHHHHhcCceEEEecCCCCCCCCCC--CceEEEEEEecCc
Q 026858 180 SPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGY--EETDVYILRKKKK 224 (232)
Q Consensus 180 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 224 (232)
.......+.+.+-+...+..+-.-. ...|.. -...|+.+++.+.
T Consensus 403 ~~~~~~~iRk~Lle~~~l~aII~LP-~~lF~~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 403 NTNNEGEIRKTLVEQDLVECMVALP-GQLFTNTQIPACIWFLTKDKN 448 (544)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEEECC-TTBCCSCSSCEEEEEEESCCS
T ss_pred CcchHHHHHHHHHhCCcHhEEEECC-CCCCCCCCCCeEEEEEecCCC
Confidence 1123556677666555554443221 122322 2356777777654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.9e-06 Score=65.42 Aligned_cols=99 Identities=12% Similarity=0.028 Sum_probs=66.5
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc------------ccc--
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD------------QIN-- 134 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~------------~~~-- 134 (232)
+|||+|| |..++.+|+...++|+.+|.++. ...++.++..++..-..++.+...+..... .++
T Consensus 33 ~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~ 110 (202)
T 3cvo_A 33 VILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDY 110 (202)
T ss_dssp EEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHH
T ss_pred EEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHH
Confidence 9999998 46778888752349999999985 667777887765200456777776643320 011
Q ss_pred -----c--CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 135 -----A--LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 135 -----~--~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
. ..++||+|+.... .....+..+.++|+|||++++-
T Consensus 111 ~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 111 PLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp HHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEET
T ss_pred hhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEe
Confidence 0 1267999998542 2235566677999999999654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-07 Score=85.47 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=65.7
Q ss_pred cEEEeCccccHHHHHH---HH-hC----------CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-
Q 026858 70 RAIELGAGCGAAGMAF---YL-LG----------LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI- 133 (232)
Q Consensus 70 ~VLElGcGtG~~s~~l---a~-~~----------~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~- 133 (232)
.|||+|||+|.++..+ ++ .+ ..+|+++|.|+. +...+.. ..|+ +.++|.+...+......-
T Consensus 412 VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~-~~Ng--~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 412 VIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYM-NVRT--WKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHH-HHHT--TTTCSEEEESCGGGHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHH-HhcC--CCCeEEEEeCchhhccccc
Confidence 7999999999997533 22 12 239999999984 3333332 2354 556788888877554310
Q ss_pred -ccCCCCccEEEEcccCC---CcccHHHHHHHHHHhhCCCcEEE
Q 026858 134 -NALKPPFDLVIAADVVY---IEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 134 -~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
....++.|+||+ ..+. ..+..+..+..+.+.|+|||.++
T Consensus 489 ~~~~~ekVDIIVS-ElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVS-ELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEE-CCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEE-eccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 011468999997 3332 33456678888889999999843
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.7e-07 Score=73.32 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=52.9
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|.++..++..+. +|+++|+++ ++..++++.. ..++.+...|....+. +. ...+|.|+++.+
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~------~~~v~vi~~D~l~~~~-~~-~~~~~~iv~NlP 119 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLS------GLPVRLVFQDALLYPW-EE-VPQGSLLVANLP 119 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTT------TSSEEEEESCGGGSCG-GG-SCTTEEEEEEEC
T ss_pred eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC------CCCEEEEECChhhCCh-hh-ccCccEEEecCc
Confidence 799999999999999999886 999999998 4555555443 1346777777655432 11 125899998776
Q ss_pred CCC
Q 026858 149 VYI 151 (232)
Q Consensus 149 ~~~ 151 (232)
.+-
T Consensus 120 y~i 122 (271)
T 3fut_A 120 YHI 122 (271)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.6e-06 Score=66.51 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=43.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD 131 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~ 131 (232)
..++. +|||||||+|.++..++..++.+++++|+++. +..++.+ . ..++.+...|....+
T Consensus 29 ~~~~~--~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~----~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 29 IEEGN--TVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---G----DERLEVINEDASKFP 89 (249)
T ss_dssp CCTTC--EEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---C----CTTEEEECSCTTTCC
T ss_pred CCCcC--EEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---c----CCCeEEEEcchhhCC
Confidence 34567 99999999999999999886459999999994 4444433 1 234677777765543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.2e-07 Score=75.02 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=57.3
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHh---cCCC---CCCceEEEEeecCCCcccccCCCCccE
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKR---NKPV---LNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~---~~~~---~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+|||+|||+|..++.+|..++ +|+++|.++. ...++.|++. +... +..++.+...|..... ......||+
T Consensus 91 ~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L--~~~~~~fDv 167 (258)
T 2oyr_A 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL--TDITPRPQV 167 (258)
T ss_dssp CEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS--TTCSSCCSE
T ss_pred EEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH--HhCcccCCE
Confidence 999999999999999999888 8999999984 3444444432 1111 1134677766643321 112346999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCC
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVAD 168 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~p 168 (232)
|++.+++.... -..+++...+.+++
T Consensus 168 V~lDP~y~~~~-~saavkk~~~~lr~ 192 (258)
T 2oyr_A 168 VYLDPMFPHKQ-KSALVKKEMRVFQS 192 (258)
T ss_dssp EEECCCCCCCC-C-----HHHHHHHH
T ss_pred EEEcCCCCCcc-cchHHHHHHHHHHH
Confidence 99865554332 22444545555544
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=62.56 Aligned_cols=51 Identities=35% Similarity=0.492 Sum_probs=41.0
Q ss_pred ccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCcccc-HHHHHHHH-hCCCcEEEEcchh
Q 026858 29 VGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCG-AAGMAFYL-LGLADIVLTDISP 100 (232)
Q Consensus 29 ~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG-~~s~~la~-~~~~~v~~~D~s~ 100 (232)
.+.+-| ..|++|+.+... ++. +|||||||+| ..+..++. .|+ .|+++|+++
T Consensus 17 ~~~~m~---e~LaeYI~~~~~---------------~~~--rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp 69 (153)
T 2k4m_A 17 RGSHMW---NDLAVYIIRCSG---------------PGT--RVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKP 69 (153)
T ss_dssp CCCHHH---HHHHHHHHHHSC---------------SSS--EEEEETCTTCCHHHHHHHHHSCC-EEEEECSSC
T ss_pred chhhHH---HHHHHHHHhcCC---------------CCC--cEEEEccCCChHHHHHHHHhCCC-eEEEEECCc
Confidence 344543 358999988754 456 8999999999 59999997 788 999999998
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-06 Score=73.47 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=56.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccC-CCC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INAL-KPP 139 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~-~~~ 139 (232)
.++. +|||+|||+|..+..+++. +..+|+++|.|+ ++..++++...++ .++.+...|+..... .... ..+
T Consensus 25 ~~g~--~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g----~~v~~v~~d~~~l~~~l~~~g~~~ 98 (301)
T 1m6y_A 25 EDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS----DRVSLFKVSYREADFLLKTLGIEK 98 (301)
T ss_dssp CTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT----TTEEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEECCHHHHHHHHHhcCCCC
Confidence 3667 9999999999999999877 234999999999 5667777666543 357888887654321 1111 147
Q ss_pred ccEEEEccc
Q 026858 140 FDLVIAADV 148 (232)
Q Consensus 140 fD~Ii~~~~ 148 (232)
||.|++..+
T Consensus 99 ~D~Vl~D~g 107 (301)
T 1m6y_A 99 VDGILMDLG 107 (301)
T ss_dssp EEEEEEECS
T ss_pred CCEEEEcCc
Confidence 999997543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=72.58 Aligned_cols=112 Identities=16% Similarity=0.063 Sum_probs=68.7
Q ss_pred CCcEEEeCccccHHHHHHHHh-----------------CCCcEEEEcchh-HHHHHHHHHHhcCCCC---------CCce
Q 026858 68 RRRAIELGAGCGAAGMAFYLL-----------------GLADIVLTDISP-VMPALKHNLKRNKPVL---------NKSL 120 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~-----------------~~~~v~~~D~s~-~~~~~~~n~~~~~~~~---------~~~i 120 (232)
+.+|+|+|||+|..++.+... .. +|...|+.. .-...-+.+......+ ....
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~-~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEF-TAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCE-EEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCce-eEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 359999999999988776321 13 788889875 2223333222111000 0011
Q ss_pred EEEEeecCCCcccccCCCCccEEEEcccCCCcc--------------------------------------cHHHHHHHH
Q 026858 121 KTSVLYWNNQDQINALKPPFDLVIAADVVYIEE--------------------------------------SAAQLVRAM 162 (232)
Q Consensus 121 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------------------------------~~~~~l~~l 162 (232)
.+....-+..-.....+++||+|+++.++||-+ ++..+++..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222111122356899999999998755 455678889
Q ss_pred HHhhCCCcEEEEEEeecC
Q 026858 163 EALVADDGVVLLGYQLRS 180 (232)
Q Consensus 163 ~~~l~pgG~l~i~~~~r~ 180 (232)
++.|+|||++++....|.
T Consensus 212 a~eL~pGG~mvl~~~gr~ 229 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRT 229 (374)
T ss_dssp HHHEEEEEEEEEEEEECC
T ss_pred HHHhCCCCEEEEEEecCC
Confidence 999999999999887774
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-06 Score=70.94 Aligned_cols=59 Identities=15% Similarity=0.107 Sum_probs=43.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCc----EEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLAD----IVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD 131 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~----v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~ 131 (232)
..++. +|||||||+|.++..++..+. + |+++|+++. +..++++. ..++.+...|+...+
T Consensus 40 ~~~~~--~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~-------~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 40 PERGE--RMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF-------GELLELHAGDALTFD 103 (279)
T ss_dssp CCTTC--EEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH-------GGGEEEEESCGGGCC
T ss_pred CCCcC--EEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc-------CCCcEEEECChhcCC
Confidence 34567 999999999999999998765 5 999999994 55555552 124677777765543
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.10 E-value=5e-06 Score=67.71 Aligned_cols=78 Identities=9% Similarity=-0.132 Sum_probs=47.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCc--EEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC--C
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLAD--IVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL--K 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~--v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~ 137 (232)
..++. +|||||||+|.++. +++ +. + |+++|+++. +..++++... ..++.+...|.......... .
T Consensus 19 ~~~~~--~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~~~~~~~~~~ 88 (252)
T 1qyr_A 19 PQKGQ--AMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNFGELAEKM 88 (252)
T ss_dssp CCTTC--CEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCHHHHHHHH
T ss_pred CCCcC--EEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhCCHHHhhccc
Confidence 33567 89999999999999 655 43 6 999999994 4444443221 13467777766543211000 1
Q ss_pred CCccEEEEcccCC
Q 026858 138 PPFDLVIAADVVY 150 (232)
Q Consensus 138 ~~fD~Ii~~~~~~ 150 (232)
+..|.|+++.+.+
T Consensus 89 ~~~~~vvsNlPY~ 101 (252)
T 1qyr_A 89 GQPLRVFGNLPYN 101 (252)
T ss_dssp TSCEEEEEECCTT
T ss_pred CCceEEEECCCCC
Confidence 2346777665544
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.2e-05 Score=64.24 Aligned_cols=167 Identities=11% Similarity=-0.066 Sum_probs=93.7
Q ss_pred cceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH-hCCCcEEEEcchhHHHHHHHH
Q 026858 30 GTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL-LGLADIVLTDISPVMPALKHN 108 (232)
Q Consensus 30 g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~-~~~~~v~~~D~s~~~~~~~~n 108 (232)
|.-.=.+++-|.+...+. - ..++. +|||||||+|..+..++. .++..++++|+...+. ..
T Consensus 69 g~YrSRAAfKL~ei~eK~-~-------------Lk~~~--~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~---~~ 129 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG-Y-------------VKPTG--IVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGH---EK 129 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT-S-------------CCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS---CC
T ss_pred CCEecHHHHHHHHHHHhc-C-------------CCCCC--EEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcc---cc
Confidence 333455677787777764 3 45777 999999999999998885 4666899999875110 00
Q ss_pred HHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc----c---HHHHHHHHHHhhCCC--cEEEEEEeec
Q 026858 109 LKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE----S---AAQLVRAMEALVADD--GVVLLGYQLR 179 (232)
Q Consensus 109 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~----~---~~~~l~~l~~~l~pg--G~l~i~~~~r 179 (232)
.... ......+....-+. +.......++|+|++.-... .. + .-.++.-+.++|+|| |.+++-....
T Consensus 130 pi~~-~~~g~~ii~~~~~~---dv~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~p 204 (282)
T 3gcz_A 130 PIMR-TTLGWNLIRFKDKT---DVFNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCP 204 (282)
T ss_dssp CCCC-CBTTGGGEEEECSC---CGGGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCC
T ss_pred cccc-ccCCCceEEeeCCc---chhhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecC
Confidence 0000 00111122111111 11112245799999844333 11 1 113466778899999 9988744332
Q ss_pred ChhHHHHHHHHHhcCceEEEecCCCCCCCCCCCceEEEEEEecCc
Q 026858 180 SPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKKK 224 (232)
Q Consensus 180 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 224 (232)
+......+.+.++..|.-..+.... =+.....+|.+.+.+.
T Consensus 205 yg~~~~~l~~~lk~~F~~V~~~KPa----SR~~S~E~Y~V~~~r~ 245 (282)
T 3gcz_A 205 YTPLIMEELSRLQLKHGGGLVRVPL----SRNSTHEMYWVSGTRT 245 (282)
T ss_dssp CSHHHHHHHHHHHHHHCCEEECCTT----SCTTCCCEEEETTCCC
T ss_pred CCccHHHHHHHHHHhcCCEEEEcCC----CcccCcceeEEEecCC
Confidence 1244667777787777544433221 1344555666655543
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00015 Score=60.03 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=82.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHh-cCC-CCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKR-NKP-VLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~-~~~-~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+||=||.|.|.+...+++. +..+++++|+++. ++.+++-... +.. .-..++.....|...... ...++||+||+
T Consensus 86 ~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~--~~~~~yDvIi~ 163 (294)
T 3o4f_A 86 HVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN--QTSQTFDVIIS 163 (294)
T ss_dssp EEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS--CSSCCEEEEEE
T ss_pred eEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh--hccccCCEEEE
Confidence 9999999999999888876 5569999999994 5555554322 111 123567777776554432 23457999996
Q ss_pred cc--cCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceEEEe
Q 026858 146 AD--VVYIEE--SAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 146 ~~--~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~~~~ 200 (232)
.. +..... --..+++.+++.|+|||.++.-.... .........+.+.+-|.....
T Consensus 164 D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~ 224 (294)
T 3o4f_A 164 DCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF 224 (294)
T ss_dssp SCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEE
T ss_pred eCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceee
Confidence 32 111111 12568899999999999998853222 223344455666665654443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3e-05 Score=66.70 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=66.4
Q ss_pred CcEEEeCccccHHHHHHHHh-------------------CCCcEEEEcchh-----H---HHHHHHHHHh-cCCCCCCce
Q 026858 69 RRAIELGAGCGAAGMAFYLL-------------------GLADIVLTDISP-----V---MPALKHNLKR-NKPVLNKSL 120 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~-------------------~~~~v~~~D~s~-----~---~~~~~~n~~~-~~~~~~~~i 120 (232)
.+|+|+||++|..++.+... .. +|...|+.. . +......... ++... + .
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~-~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~-~-~ 130 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTI-QIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKI-G-S 130 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEE-EEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCT-T-S
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCce-EEEecCCCccchHHHHhhhhhhHhhhhhhccCCC-C-c
Confidence 48999999999988766543 13 788888762 1 1111111111 11111 1 1
Q ss_pred EEEEeecCCCcccccCCCCccEEEEcccCCCcccHH---------------------------------------HHHHH
Q 026858 121 KTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAA---------------------------------------QLVRA 161 (232)
Q Consensus 121 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~---------------------------------------~~l~~ 161 (232)
.+....-+..-.....++++|+|+++.++||-+..+ .+++.
T Consensus 131 ~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~ 210 (384)
T 2efj_A 131 CLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRI 210 (384)
T ss_dssp EEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344433222222223356899999999998754332 12566
Q ss_pred HHHhhCCCcEEEEEEeecCh
Q 026858 162 MEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 162 l~~~l~pgG~l~i~~~~r~~ 181 (232)
.++.|+|||++++....|..
T Consensus 211 Ra~eL~pGG~mvl~~~gr~~ 230 (384)
T 2efj_A 211 HSEELISRGRMLLTFICKED 230 (384)
T ss_dssp HHHHEEEEEEEEEEEECCCT
T ss_pred HHHHhccCCeEEEEEecCCC
Confidence 68999999999999877753
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00069 Score=60.81 Aligned_cols=157 Identities=10% Similarity=-0.027 Sum_probs=88.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh----C----------CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeec
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL----G----------LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYW 127 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~----~----------~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~ 127 (232)
..++. +|+|-.||||.+.+.+... . ...++|.|+++ +...++.|+...+... . .....|.
T Consensus 215 p~~~~--~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~--~I~~~dt 289 (530)
T 3ufb_A 215 PQLGE--SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-P--RIDPENS 289 (530)
T ss_dssp CCTTC--CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-C--EEECSCT
T ss_pred cCCCC--EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-c--ccccccc
Confidence 34566 9999999999977665432 1 13699999998 4566677776655221 1 2222221
Q ss_pred CCCcc-cccCCCCccEEEEcccCCCcc----------------cHHHHHHHHHHhhC-------CCcEEEEEEeec---C
Q 026858 128 NNQDQ-INALKPPFDLVIAADVVYIEE----------------SAAQLVRAMEALVA-------DDGVVLLGYQLR---S 180 (232)
Q Consensus 128 ~~~~~-~~~~~~~fD~Ii~~~~~~~~~----------------~~~~~l~~l~~~l~-------pgG~l~i~~~~r---~ 180 (232)
-.... ......+||+|++++++.... .--.++..+.+.|+ +||++.++.+.. .
T Consensus 290 L~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~ 369 (530)
T 3ufb_A 290 LRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFS 369 (530)
T ss_dssp TCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHC
T ss_pred ccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhc
Confidence 11110 111234799999998884211 12235677777776 799998886532 1
Q ss_pred hhHHHHHHHHHhcCceEEEecCCCCCCCCCC--CceEEEEEEecCc
Q 026858 181 PEAHKLFWEMCAEVFLIEKVPHEDLHPDYGY--EETDVYILRKKKK 224 (232)
Q Consensus 181 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 224 (232)
......+.+.+-+.+.++.+-.-.....+.. -...|+.+++.++
T Consensus 370 ~~~~~~iRk~Lle~~~l~aII~LP~~~F~~~tgi~t~Il~~~K~~~ 415 (530)
T 3ufb_A 370 DGISARIKEELLKNFNLHTIVRLPEGVFAPYTDIAGNLLFFDRSGP 415 (530)
T ss_dssp CTHHHHHHHHHHHHSEEEEEEECCTTTTTTTCCCCEEEEEEESSSC
T ss_pred cchHHHHHHHHhhcCEEEEEEECCcccCcCCCCCcEEEEEEECCCC
Confidence 1334556666666566655543221111221 2345777776544
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=64.47 Aligned_cols=125 Identities=15% Similarity=0.069 Sum_probs=69.9
Q ss_pred CcEEEeCccccHHHHHHHHh-------CC------CcEEEEcchhH----HH-----------HHHHHHHhcCCCC----
Q 026858 69 RRAIELGAGCGAAGMAFYLL-------GL------ADIVLTDISPV----MP-----------ALKHNLKRNKPVL---- 116 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~-------~~------~~v~~~D~s~~----~~-----------~~~~n~~~~~~~~---- 116 (232)
.+|||+|+|+|...+.+++. .. .+++++|..+. +. .++.+.......+
T Consensus 62 ~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~~ 141 (257)
T 2qy6_A 62 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 141 (257)
T ss_dssp EEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEEE
T ss_pred CEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccchh
Confidence 39999999999977665432 11 38999998751 22 2222222210000
Q ss_pred ----C---CceEEEEeecCCCcccccCC----CCccEEEEcccCC---Cccc-HHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 117 ----N---KSLKTSVLYWNNQDQINALK----PPFDLVIAADVVY---IEES-AAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 117 ----~---~~i~~~~~d~~~~~~~~~~~----~~fD~Ii~~~~~~---~~~~-~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
. .++.....|.... .+... ..||.|+. |.+. +++. -+.+++.+.++|+|||+++... ..
T Consensus 142 r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tys--aa- 215 (257)
T 2qy6_A 142 RLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT--SA- 215 (257)
T ss_dssp EEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESC--CB-
T ss_pred heeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEe--CC-
Confidence 0 1223333332221 11222 27999998 4332 2221 3578999999999999987422 11
Q ss_pred hHHHHHHHHHh-cCceEEEecC
Q 026858 182 EAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 182 ~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
..+...+. .+|.+.+.+.
T Consensus 216 ---~~vrr~L~~aGF~v~~~~g 234 (257)
T 2qy6_A 216 ---GFVRRGLQEAGFTMQKRKG 234 (257)
T ss_dssp ---HHHHHHHHHHTEEEEEECC
T ss_pred ---HHHHHHHHHCCCEEEeCCC
Confidence 23444444 5899988753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00039 Score=57.29 Aligned_cols=167 Identities=11% Similarity=-0.039 Sum_probs=93.8
Q ss_pred ccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHH
Q 026858 29 VGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKH 107 (232)
Q Consensus 29 ~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~ 107 (232)
+|.-.=.+++-|.+...+ .- ..++. +||||||++|..+..+++. ++..|+++|+...+. .
T Consensus 59 ~g~yrSRaa~KL~ei~ek-~l-------------~~~g~--~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~---~ 119 (300)
T 3eld_A 59 VGISVSRGAAKIRWLHER-GY-------------LRITG--RVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGH---E 119 (300)
T ss_dssp SCCCSSTTHHHHHHHHHH-TS-------------CCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTS---C
T ss_pred CCCccchHHHHHHHHHHh-CC-------------CCCCC--EEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccc---c
Confidence 344455677778777777 32 44778 9999999999999999875 666899999864110 0
Q ss_pred HHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc-------HHHHHHHHHHhhCCC-cEEEEEEeec
Q 026858 108 NLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES-------AAQLVRAMEALVADD-GVVLLGYQLR 179 (232)
Q Consensus 108 n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-------~~~~l~~l~~~l~pg-G~l~i~~~~r 179 (232)
.... .......+....-.. +......+.+|+|++.-... ... ...++.-+.++|+|| |.+++-....
T Consensus 120 ~P~~-~~~~~~~iv~~~~~~---di~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~ 194 (300)
T 3eld_A 120 KPIH-MQTLGWNIVKFKDKS---NVFTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAP 194 (300)
T ss_dssp CCCC-CCBTTGGGEEEECSC---CTTTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESST
T ss_pred cccc-ccccCCceEEeecCc---eeeecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 0000 000111122221111 11111235799999843333 221 123467778899999 9988754321
Q ss_pred ChhHHHHHHHHHhcCceEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 180 SPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 180 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
+......+...++..|.-..+.... =+.....+|.+.+.+
T Consensus 195 yG~~~~~ll~~lk~~F~~V~~~KPa----SR~~S~E~Y~V~~~r 234 (300)
T 3eld_A 195 YHPDVIEKLERLQLRFGGGIVRVPF----SRNSTHEMYYISGAR 234 (300)
T ss_dssp TSHHHHHHHHHHHHHHCCEEECCTT----SCTTCCCEEEESSCC
T ss_pred cCccHHHHHHHHHHhCCcEEEEeCC----CCCCChHHeeeccCC
Confidence 1244667777777777544443221 134445566655544
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=8.2e-05 Score=63.53 Aligned_cols=113 Identities=17% Similarity=0.151 Sum_probs=75.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCC---CCCceEEEEeecCCCcccccCCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPV---LNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
++. +|||+.||+|.=+..++..+ .+.+++.|+++. +..+++|+.+.... ....+.....|...... ...+.
T Consensus 148 pg~--~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~--~~~~~ 223 (359)
T 4fzv_A 148 PGD--IVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE--LEGDT 223 (359)
T ss_dssp TTE--EEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH--HSTTC
T ss_pred CCC--EEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch--hcccc
Confidence 677 99999999999888777663 347999999984 77778888765432 12345555554332211 12457
Q ss_pred ccEEEEcccCCC---------cc---------------cHHHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 140 FDLVIAADVVYI---------EE---------------SAAQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 140 fD~Ii~~~~~~~---------~~---------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
||.|++..+... +. .-..++....++++|||+++.++-.-.+
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 999997444321 00 1235677788889999999987654443
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.81 E-value=1.5e-05 Score=68.07 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=68.6
Q ss_pred CCcEEEeCccccHHHHHHHHh------------------CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecC
Q 026858 68 RRRAIELGAGCGAAGMAFYLL------------------GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWN 128 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~------------------~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~ 128 (232)
+.+|+|+||++|..++.+... .. +|++.|... ....+.+.+.... ... ...+....-+
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~-~v~~nDLp~NDFntlF~~L~~~~-~~~-~~~f~~gvpg 128 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEY-QIFLNDLPGNDFNAIFRSLPIEN-DVD-GVCFINGVPG 128 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEE-EEEEEECTTSCHHHHHTTTTTSC-SCT-TCEEEEEEES
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCce-EEEecCCCchHHHHHHHhcchhc-ccC-CCEEEEecch
Confidence 358999999999887654332 13 788999876 2333333222110 000 1233333333
Q ss_pred CCcccccCCCCccEEEEcccCCCccc---------------------------------HHHHHHHHHHhhCCCcEEEEE
Q 026858 129 NQDQINALKPPFDLVIAADVVYIEES---------------------------------AAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 129 ~~~~~~~~~~~fD~Ii~~~~~~~~~~---------------------------------~~~~l~~l~~~l~pgG~l~i~ 175 (232)
..-.....++++|+|+++.+++|-+. +..+++..++.|+|||++++.
T Consensus 129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 32222233568999999999986433 344588889999999999998
Q ss_pred EeecC
Q 026858 176 YQLRS 180 (232)
Q Consensus 176 ~~~r~ 180 (232)
...|.
T Consensus 209 ~~gr~ 213 (359)
T 1m6e_X 209 ILGRR 213 (359)
T ss_dssp EEECS
T ss_pred EecCC
Confidence 87664
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=60.64 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=82.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
.+. .+||+-+|||.+++.+.+.+ .+++++|.++ .....++|+.. ..++.+...|...... ......+||+
T Consensus 91 n~~--~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 91 NLN--STLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSS--SSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred cCC--CceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 456 79999999999999998855 6999999998 24444444322 2446666665322111 1111236999
Q ss_pred EEEcccCCC-cccHHHHHHHHHHh--hCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 143 VIAADVVYI-EESAAQLVRAMEAL--VADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 143 Ii~~~~~~~-~~~~~~~l~~l~~~--l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
|++ |+.|. ......+++.+.+. +.|+|.+++=++.-.....+.|.+.++
T Consensus 163 Vfi-DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~ 214 (283)
T 2oo3_A 163 IFI-DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR 214 (283)
T ss_dssp EEE-CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEE-CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHH
Confidence 997 55554 56888888888874 469999999887766666777777775
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00061 Score=55.03 Aligned_cols=160 Identities=10% Similarity=-0.075 Sum_probs=86.7
Q ss_pred ccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCC----cEEEEcc--hhH
Q 026858 29 VGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLA----DIVLTDI--SPV 101 (232)
Q Consensus 29 ~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~----~v~~~D~--s~~ 101 (232)
+|.-.=.+++-|.+.-.+. - ..++. +||||||++|..+..++.. +.. .++++|. .++
T Consensus 51 ~g~yRSRAayKL~EIdeK~-l-------------ikpg~--~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~ 114 (269)
T 2px2_A 51 GGHPVSRGTAKLRWLVERR-F-------------VQPIG--KVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM 114 (269)
T ss_dssp CSCCSSTHHHHHHHHHHTT-S-------------CCCCE--EEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC
T ss_pred CCCcccHHHHHHHHHHHcC-C-------------CCCCC--EEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC
Confidence 3444445666676666554 3 55788 9999999999999999876 222 3445552 120
Q ss_pred HHHHHHHHHhcCCCCCCceEEEEe-ecCCCcccccCCCCccEEEEcccCCC-cc------cHHHHHHHHHHhhCCCc-EE
Q 026858 102 MPALKHNLKRNKPVLNKSLKTSVL-YWNNQDQINALKPPFDLVIAADVVYI-EE------SAAQLVRAMEALVADDG-VV 172 (232)
Q Consensus 102 ~~~~~~n~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~fD~Ii~~~~~~~-~~------~~~~~l~~l~~~l~pgG-~l 172 (232)
......+ .-+.+... |+.... ..++|+|+|--..-. .. .+. ++.-+.+.|+||| .+
T Consensus 115 --------~~~~~Gv-~~i~~~~G~Df~~~~-----~~~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~F 179 (269)
T 2px2_A 115 --------LMQSYGW-NIVTMKSGVDVFYKP-----SEISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEF 179 (269)
T ss_dssp --------CCCSTTG-GGEEEECSCCGGGSC-----CCCCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEE
T ss_pred --------cccCCCc-eEEEeeccCCccCCC-----CCCCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEE
Confidence 0000000 11233333 543311 347999997332211 11 122 5666778999999 77
Q ss_pred EEEEeecChhHHHHHHHHHhcCceEEEecCCCCCCCCCCCceEEEEEEecC
Q 026858 173 LLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKKK 223 (232)
Q Consensus 173 ~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 223 (232)
++=....+......+++.++..|....+... .-+.....+|.+.+.+
T Consensus 180 vvKVFqg~~~~~~~~l~~lk~~F~~vkvk~p----aSR~~S~E~YlVa~~~ 226 (269)
T 2px2_A 180 CIKILCPYMPKVIEKLESLQRRFGGGLVRVP----LSRNSNHEMYWVSGAS 226 (269)
T ss_dssp EEEESCTTSHHHHHHHHHHHHHHCCEEECCT----TSCTTCCCEEEETTCC
T ss_pred EEEECCCCchHHHHHHHHHHHHcCCEEEECC----CCCCCCccEEEEeccc
Confidence 7633222224455666677777754444221 2234445566655543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00023 Score=60.70 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=54.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.++. +||||||.+|..+..+++.+. +|+++|..++-..... ...+.+...|...... ..+.+|+|
T Consensus 210 ~~G~--~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~~---------~~~V~~~~~d~~~~~~---~~~~~D~v 274 (375)
T 4auk_A 210 ANGM--WAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLMD---------TGQVTWLREDGFKFRP---TRSNISWM 274 (375)
T ss_dssp CTTC--EEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHHT---------TTCEEEECSCTTTCCC---CSSCEEEE
T ss_pred CCCC--EEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhcc---------CCCeEEEeCccccccC---CCCCcCEE
Confidence 3678 999999999999999999887 9999998773222111 1235666655433221 23579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVA 167 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~ 167 (232)
+| |....+. .....+.+.+.
T Consensus 275 vs-Dm~~~p~---~~~~l~~~wl~ 294 (375)
T 4auk_A 275 VC-DMVEKPA---KVAALMAQWLV 294 (375)
T ss_dssp EE-CCSSCHH---HHHHHHHHHHH
T ss_pred EE-cCCCChH---HhHHHHHHHHh
Confidence 97 4444333 33344444443
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=60.57 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCC---C-C-CCceEEEEeecCCCcc-cccCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKP---V-L-NKSLKTSVLYWNNQDQ-INALK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~---~-~-~~~i~~~~~d~~~~~~-~~~~~ 137 (232)
+.+ +||=||.|.|.+...+.+.+..+++++|+++. ++.+++-...... + . ..++.....|...... .....
T Consensus 205 ~pk--rVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGK--DVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTC--EEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCC--eEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 446 99999999999998888776679999999995 5555543221110 0 0 1234444443221110 01123
Q ss_pred CCccEEEEcccCC---Cc--------ccHHHHHHHHHHhhCCCcEEEEEEee-cChhHHHHHHHHHhcCce
Q 026858 138 PPFDLVIAADVVY---IE--------ESAAQLVRAMEALVADDGVVLLGYQL-RSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 138 ~~fD~Ii~~~~~~---~~--------~~~~~~l~~l~~~l~pgG~l~i~~~~-r~~~~~~~~~~~~~~~f~ 196 (232)
++||+||.. ... .. .--..+++.+++.|+|||.++.-... ........+.+.++.-|.
T Consensus 283 ~~yDvIIvD-l~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~ 352 (381)
T 3c6k_A 283 REFDYVIND-LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYC 352 (381)
T ss_dssp CCEEEEEEE-CCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSS
T ss_pred CceeEEEEC-CCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCC
Confidence 579999973 221 10 01246678899999999998874322 223334556666666553
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00021 Score=58.96 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=76.2
Q ss_pred cEEEeCccccHHHHHHHHh------CCCcEEEEcchh---------------------------HHHHHHHHHHhcCCCC
Q 026858 70 RAIELGAGCGAAGMAFYLL------GLADIVLTDISP---------------------------VMPALKHNLKRNKPVL 116 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~------~~~~v~~~D~s~---------------------------~~~~~~~n~~~~~~~~ 116 (232)
+|||+|+..|..++.++.. ..++++++|..+ ..+.+++|+...+ +
T Consensus 109 ~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g--l 186 (282)
T 2wk1_A 109 DLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD--L 186 (282)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT--C
T ss_pred cEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC--C
Confidence 8999999999988877643 135899999531 1344566666554 3
Q ss_pred -CCceEEEEeecCCCcccccC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 117 -NKSLKTSVLYWNNQDQINAL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 117 -~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
..++.+...+..... +.. .++||+|..-.-.| ......++.+...|+|||.+++-+....+.....+.+.++
T Consensus 187 ~~~~I~li~Gda~etL--~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~ 260 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTL--PTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRA 260 (282)
T ss_dssp CSTTEEEEESCHHHHS--TTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHH
T ss_pred CcCceEEEEeCHHHHH--hhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 366888887764322 122 35799999854332 3345678889999999998887665322444444444443
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0015 Score=53.76 Aligned_cols=111 Identities=15% Similarity=0.077 Sum_probs=63.7
Q ss_pred CCCCCcEEEeCc------cccHHHHHHHHhCC--CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC
Q 026858 65 HSTRRRAIELGA------GCGAAGMAFYLLGL--ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL 136 (232)
Q Consensus 65 ~~~~~~VLElGc------GtG~~s~~la~~~~--~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 136 (232)
.+. +|||||+ -+|. ..+.+.+. ..++++|+.+.. ... . .+...|..... .
T Consensus 109 ~gm--rVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~---------sda---~--~~IqGD~~~~~----~ 166 (344)
T 3r24_A 109 YNM--RVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV---------SDA---D--STLIGDCATVH----T 166 (344)
T ss_dssp TTC--EEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB---------CSS---S--EEEESCGGGEE----E
T ss_pred CCC--EEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcccc---------cCC---C--eEEEccccccc----c
Confidence 566 9999997 4454 23333322 289999998821 010 1 33555543222 1
Q ss_pred CCCccEEEEcccCC-----------CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 137 KPPFDLVIAADVVY-----------IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~-----------~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
.++||+|++--..- .....+.++.-+.+.|+|||.+++=...-. . .+.+.+ +.+.|.....
T Consensus 167 ~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs-g-~~~L~~-lrk~F~~VK~ 238 (344)
T 3r24_A 167 ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-W-NADLYK-LMGHFSWWTA 238 (344)
T ss_dssp SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-C-CHHHHH-HHTTEEEEEE
T ss_pred CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC-C-HHHHHH-HHhhCCeEEE
Confidence 36799999722110 112467777888889999999998543222 2 233444 4456764444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00045 Score=57.29 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=38.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
.++. .|||++||+|.+++.+++.|. +++++|+++ ++..+++++...
T Consensus 234 ~~~~--~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGD--VVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTC--EEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCC--EEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 3677 999999999999999999887 999999998 466666666543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00096 Score=53.24 Aligned_cols=142 Identities=13% Similarity=-0.052 Sum_probs=79.2
Q ss_pred cceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHH
Q 026858 30 GTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHN 108 (232)
Q Consensus 30 g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n 108 (232)
|.-.-.+++-|.+...+. . ..++. +||||||++|..+..++.. ++.+|+++|+...-.....-
T Consensus 57 g~yrSRa~~KL~ei~ek~-~-------------l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~ 120 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERN-M-------------VIPEG--RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP 120 (267)
T ss_dssp SCCSSTHHHHHHHHHHTT-S-------------SCCCE--EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC
T ss_pred CCccchHHHHHHHHHHhc-C-------------CCCCC--EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch
Confidence 444455666676666655 3 55778 9999999999999977765 77799999987520000000
Q ss_pred HHhcCCCCCCceEEEEe-ecCCCcccccCCCCccEEEEcccCCCcccH------HHHHHHHHHhhCCCcEEEEEEeecCh
Q 026858 109 LKRNKPVLNKSLKTSVL-YWNNQDQINALKPPFDLVIAADVVYIEESA------AQLVRAMEALVADDGVVLLGYQLRSP 181 (232)
Q Consensus 109 ~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~------~~~l~~l~~~l~pgG~l~i~~~~r~~ 181 (232)
.+..+ -+.+.+... |+.... ..++|+|+|.-.-...... -.+++.+.+.|++ |.+++-....+.
T Consensus 121 ~~s~g---wn~v~fk~gvDv~~~~-----~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 121 MSTYG---WNIVKLMSGKDVFYLP-----PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CCCTT---TTSEEEECSCCGGGCC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred hhhcC---cCceEEEeccceeecC-----CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 00000 123555554 442221 2569999983332222211 1145555677788 666663322222
Q ss_pred hHHHHHHHHHhcCce
Q 026858 182 EAHKLFWEMCAEVFL 196 (232)
Q Consensus 182 ~~~~~~~~~~~~~f~ 196 (232)
....++.+.++..|.
T Consensus 192 p~v~e~l~~lq~~fg 206 (267)
T 3p8z_A 192 PTVIEHLERLQRKHG 206 (267)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhC
Confidence 224466666665554
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0012 Score=55.97 Aligned_cols=123 Identities=13% Similarity=0.080 Sum_probs=66.6
Q ss_pred CcEEEeCccccHHHHHHHHhC--CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 69 RRAIELGAGCGAAGMAFYLLG--LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~--~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
.+|+||.||.|.+++.+.+.| +..+.++|+++ ++...+.| .... .+...|+............+|+|+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N----~~~~----~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN----FPHT----QLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH----CTTS----CEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHh----cccc----ccccCCHHHccHhHcCcCCcCEEEE
Confidence 389999999999999999888 55799999998 34444443 3221 2233344332210000116899999
Q ss_pred cccCCCcc----------cHHHHHHHHHHhhCCC---cEEEEEEeecC---hhHHHHHHHHHhc-CceEEE
Q 026858 146 ADVVYIEE----------SAAQLVRAMEALVADD---GVVLLGYQLRS---PEAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 146 ~~~~~~~~----------~~~~~l~~l~~~l~pg---G~l~i~~~~r~---~~~~~~~~~~~~~-~f~~~~ 199 (232)
+++....+ ....++..+.++++.- -.+++...... ......+.+.+.+ +|.+..
T Consensus 75 gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T 1g55_A 75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp CCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred cCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccCHHHHHHHHHHHHHCCCeeEE
Confidence 87742111 1223555555555321 23444433332 2345556666654 787654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=53.26 Aligned_cols=144 Identities=11% Similarity=-0.037 Sum_probs=80.9
Q ss_pred CCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHH
Q 026858 27 MHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPAL 105 (232)
Q Consensus 27 ~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~ 105 (232)
..+|.-+-.+++-|.+...+. . ..++. +||||||++|..+..++.. ++.+|+++|+...-.
T Consensus 70 ~~~g~y~SR~~~KL~ei~~~~-~-------------l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~h-- 131 (321)
T 3lkz_A 70 VTGGHPVSRGTAKLRWLVERR-F-------------LEPVG--KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGH-- 131 (321)
T ss_dssp CSSCCCSSTHHHHHHHHHHTT-S-------------CCCCE--EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTS--
T ss_pred CcCCCccchHHHHHHHHHHhc-C-------------CCCCC--EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCc--
Confidence 344555666777777766663 3 45777 9999999999999977655 777899999875100
Q ss_pred HHHHHhcCCCCC-CceEEEEe-ecCCCcccccCCCCccEEEEcccCCCccc-H------HHHHHHHHHhhCCC-cEEEEE
Q 026858 106 KHNLKRNKPVLN-KSLKTSVL-YWNNQDQINALKPPFDLVIAADVVYIEES-A------AQLVRAMEALVADD-GVVLLG 175 (232)
Q Consensus 106 ~~n~~~~~~~~~-~~i~~~~~-d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-~------~~~l~~l~~~l~pg-G~l~i~ 175 (232)
.+... ...+. .-+.+... |+.... ..++|+|+| |.-..... . -.+++.+.+.|+++ |.+++-
T Consensus 132 -e~P~~-~~ql~w~lV~~~~~~Dv~~l~-----~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K 203 (321)
T 3lkz_A 132 -EEPQL-VQSYGWNIVTMKSGVDVFYRP-----SECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK 203 (321)
T ss_dssp -CCCCC-CCBTTGGGEEEECSCCTTSSC-----CCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred -cCcch-hhhcCCcceEEEeccCHhhCC-----CCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence 00000 00000 11333332 322221 256999997 33332221 1 12556667788888 776663
Q ss_pred EeecChhHHHHHHHHHhcCce
Q 026858 176 YQLRSPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 176 ~~~r~~~~~~~~~~~~~~~f~ 196 (232)
....+......+++.++..|.
T Consensus 204 Vl~pY~~~v~e~l~~lq~~fg 224 (321)
T 3lkz_A 204 VLCPYMPKVIEKMELLQRRYG 224 (321)
T ss_dssp ESCTTSHHHHHHHHHHHHHHC
T ss_pred EcCCCChHHHHHHHHHHHHhC
Confidence 322222445566776665554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00027 Score=73.82 Aligned_cols=101 Identities=21% Similarity=0.152 Sum_probs=44.3
Q ss_pred CcEEEeCccccHHHHHHHH-hC-----CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 69 RRAIELGAGCGAAGMAFYL-LG-----LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~-~~-----~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.+|||||.|+|..+..+.. .+ ..+++.+|+|+. ...++.....- ++....+|..... ......||
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~--~~~~~~yd 1313 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPA--PGSLGKAD 1313 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCC--C-----CC
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccc--cCCCCcee
Confidence 3999999999876533322 11 348999999962 22222222110 1222222221110 11234699
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+||++++++...+....+.+++++|+|||.+++...
T Consensus 1314 lvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1314 LLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp EEEEECC--------------------CCEEEEEEC
T ss_pred EEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999999888889999999999999999988653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.86 E-value=0.027 Score=47.29 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=46.9
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.+|+||.||+|.+++.+.+.|+..+.++|+++ ++...+.|.. ... ..|+..... .....+|+|+.++
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~----~~~------~~Di~~~~~--~~~~~~D~l~~gp 79 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG----EKP------EGDITQVNE--KTIPDHDILCAGF 79 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS----CCC------BSCGGGSCG--GGSCCCSEEEEEC
T ss_pred CcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcC----CCC------cCCHHHcCH--hhCCCCCEEEECC
Confidence 38999999999999999999987888999998 3444444432 110 223322221 1123599999977
Q ss_pred cCC
Q 026858 148 VVY 150 (232)
Q Consensus 148 ~~~ 150 (232)
+..
T Consensus 80 PCQ 82 (327)
T 2c7p_A 80 PCQ 82 (327)
T ss_dssp CCT
T ss_pred CCC
Confidence 663
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.01 Score=49.97 Aligned_cols=147 Identities=15% Similarity=0.120 Sum_probs=80.6
Q ss_pred CCcEEEeCccccHHHHHHHHhCC--CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGL--ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~--~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+++++||.||.|.+++.+.+.|. ..+.++|+++ .+.+..+.|.+.. .....|+............+|+++.
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~---~a~~ty~~N~~~~----~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINT---VANSVYKHNFPET----NLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCH---HHHHHHHHHCTTS----CEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCH---HHHHHHHHhCCCC----ceeccccccCCHHHhccCCCCEEEe
Confidence 34899999999999998888775 5688999999 3333344443221 2233344333211111126899998
Q ss_pred cccCCCcc----------cHHHHHHHHHHhhCC-C-cEEEEEEeecCh---hHHHHHHHHHhc-CceEEEecCCCCCCCC
Q 026858 146 ADVVYIEE----------SAAQLVRAMEALVAD-D-GVVLLGYQLRSP---EAHKLFWEMCAE-VFLIEKVPHEDLHPDY 209 (232)
Q Consensus 146 ~~~~~~~~----------~~~~~l~~l~~~l~p-g-G~l~i~~~~r~~---~~~~~~~~~~~~-~f~~~~~~~~~~~~~~ 209 (232)
+.+....+ ....++..+.++++. . -.+++....... ...+.+.+.+.+ +|.+....- -..+|
T Consensus 76 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl--~a~~~ 153 (333)
T 4h0n_A 76 SPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLL--CPSTV 153 (333)
T ss_dssp CCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEE--CTTTT
T ss_pred cCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEe--cHHHc
Confidence 77663211 122345555555532 1 456666554432 234556666664 777654321 12233
Q ss_pred C--CCceEEEEEEecC
Q 026858 210 G--YEETDVYILRKKK 223 (232)
Q Consensus 210 ~--~~~~~l~~~~~~~ 223 (232)
. ..+.++|.+..+.
T Consensus 154 GvPQ~R~R~fiva~r~ 169 (333)
T 4h0n_A 154 GVPNSRLRYYCTARRN 169 (333)
T ss_dssp TCSCCCCEEEEEEEET
T ss_pred CCCccceEEEEEEEeC
Confidence 3 3345566665543
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0032 Score=51.06 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=38.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRN 112 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~ 112 (232)
.++. .|||.+||+|.+++.+.+.|. +++++|+++. +..+..++..+
T Consensus 211 ~~~~--~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 211 NPND--LVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp CTTC--EEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-
T ss_pred CCCC--EEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc
Confidence 3677 999999999999999999887 9999999994 66666666544
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.011 Score=49.70 Aligned_cols=144 Identities=12% Similarity=0.096 Sum_probs=80.2
Q ss_pred CCcEEEeCccccHHHHHHHHhCC--CcE-EEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGL--ADI-VLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~--~~v-~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++++||.||.|.+++.+.+.|. ..+ .++|+++ +....+.|.... ....|+............+|++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~---------~~~~DI~~~~~~~i~~~~~Dil 80 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE---------VQVKNLDSISIKQIESLNCNTW 80 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC---------CBCCCTTTCCHHHHHHTCCCEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC---------cccCChhhcCHHHhccCCCCEE
Confidence 45899999999999999988874 456 6999999 344444443211 1122333322111111268999
Q ss_pred EEcccCCCc------------ccHHHHHHHHHH-hhCC---CcEEEEEEeecCh---hHHHHHHHHHhc-CceEEEecCC
Q 026858 144 IAADVVYIE------------ESAAQLVRAMEA-LVAD---DGVVLLGYQLRSP---EAHKLFWEMCAE-VFLIEKVPHE 203 (232)
Q Consensus 144 i~~~~~~~~------------~~~~~~l~~l~~-~l~p---gG~l~i~~~~r~~---~~~~~~~~~~~~-~f~~~~~~~~ 203 (232)
+.+++.... +....++..+.+ +++. ...+++....... ...+.+.+.+++ +|.+....-.
T Consensus 81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~ 160 (327)
T 3qv2_A 81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICS 160 (327)
T ss_dssp EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEe
Confidence 998775322 233456777777 6642 2456666544331 334556665654 7766443211
Q ss_pred CCCCCCC--CCceEEEEEEec
Q 026858 204 DLHPDYG--YEETDVYILRKK 222 (232)
Q Consensus 204 ~~~~~~~--~~~~~l~~~~~~ 222 (232)
..+|. ..+-++|.+..+
T Consensus 161 --a~~yGvPQ~R~R~fivg~r 179 (327)
T 3qv2_A 161 --PIDIGIPNSRTRYYVMARL 179 (327)
T ss_dssp --GGGGTCSBCCCEEEEEEES
T ss_pred --HHHcCCCccceEEEEEEEe
Confidence 11232 334556666554
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0039 Score=53.50 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=49.6
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-----CCCCccEE
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-----LKPPFDLV 143 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-----~~~~fD~I 143 (232)
++|+||.||.|.+++.+.+.|+..+.++|+++. +....+.|.+. ..+...|+........ ..+.+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~---a~~t~~~N~~~----~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQH---AINTHAINFPR----SLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHH---HHHHHHHHCTT----SEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHH---HHHHHHHhCCC----CceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 489999999999999999999867789999983 23333334322 2344445544321110 13579999
Q ss_pred EEcccCC
Q 026858 144 IAADVVY 150 (232)
Q Consensus 144 i~~~~~~ 150 (232)
+.+++..
T Consensus 76 ~ggpPCQ 82 (376)
T 3g7u_A 76 IGGPPCQ 82 (376)
T ss_dssp EECCCCC
T ss_pred EecCCCC
Confidence 9987753
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0045 Score=50.78 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=49.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-cc-CCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NA-LKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~-~~~~ 139 (232)
..++. .+||.+||.|..+..++..+. +|+++|.++. +..++. +.. .++.+...++.+.... .. ..++
T Consensus 20 ~~~gg--~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~L~~~g~~~ 89 (285)
T 1wg8_A 20 VRPGG--VYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRHLAALGVER 89 (285)
T ss_dssp CCTTC--EEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHHHHHTTCSC
T ss_pred CCCCC--EEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHHHHHcCCCC
Confidence 33667 999999999999999888755 9999999994 444433 211 3567777766554321 11 1136
Q ss_pred ccEEEE
Q 026858 140 FDLVIA 145 (232)
Q Consensus 140 fD~Ii~ 145 (232)
+|.|++
T Consensus 90 vDgIL~ 95 (285)
T 1wg8_A 90 VDGILA 95 (285)
T ss_dssp EEEEEE
T ss_pred cCEEEe
Confidence 788875
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.034 Score=47.51 Aligned_cols=137 Identities=17% Similarity=0.058 Sum_probs=85.4
Q ss_pred CeeEEEEEcCC-CCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcE
Q 026858 15 DALLSIQQDNG-SMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADI 93 (232)
Q Consensus 15 ~~~~~~~~~~~-~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v 93 (232)
+++++++..|. ......+.|+++-. |+.++... ...+. +||-|+.+-|.++..++..+. .
T Consensus 2 ~~~~~l~r~p~~~~~~~l~a~da~d~---~ll~~~~~------------~~~~~--~~~~~~d~~gal~~~~~~~~~--~ 62 (375)
T 4dcm_A 2 MRSLTLQRFPATDDVNPLQAWEAADE---YLLQQLDD------------TEIRG--PVLILNDAFGALSCALAEHKP--Y 62 (375)
T ss_dssp CTTCCCCCSSCCCSSCSCCSCCHHHH---HHHHTTTT------------CCCCS--CEEEECCSSSHHHHHTGGGCC--E
T ss_pred CCceeEEECCCCCCCCCCCccchHHH---HHHHhhhh------------ccCCC--CEEEECCCCCHHHHhhccCCc--e
Confidence 45667777776 66777899998865 34433320 11345 899999999999988875432 2
Q ss_pred EEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEE
Q 026858 94 VLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVV 172 (232)
Q Consensus 94 ~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l 172 (232)
...| |- ....++.|+..|... ...+.+... + ......||+|+.--+ -........+..+...+++|+.+
T Consensus 63 ~~~d-s~~~~~~~~~n~~~~~~~-~~~~~~~~~-~------~~~~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i 132 (375)
T 4dcm_A 63 SIGD-SYISELATRENLRLNGID-ESSVKFLDS-T------ADYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRI 132 (375)
T ss_dssp EEES-CHHHHHHHHHHHHHTTCC-GGGSEEEET-T------SCCCSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEE
T ss_pred EEEh-HHHHHHHHHHHHHHcCCC-ccceEeccc-c------cccccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 3345 33 356778888888632 112333222 1 122457999997322 22334555666677777899999
Q ss_pred EEEEeecC
Q 026858 173 LLGYQLRS 180 (232)
Q Consensus 173 ~i~~~~r~ 180 (232)
++....+.
T Consensus 133 ~~~g~~~~ 140 (375)
T 4dcm_A 133 IAGAKARD 140 (375)
T ss_dssp EEEEEGGG
T ss_pred EEEecccc
Confidence 88876553
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.049 Score=45.38 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=76.9
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
++||||.||.|.+++.+.+.|+..+.++|+++ ++...+ .|.+. .....|+.+.... .-...|+++.++
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~----~N~~~-----~~~~~DI~~i~~~--~~~~~D~l~ggp 69 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE----SNHSA-----KLIKGDISKISSD--EFPKCDGIIGGP 69 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHH----HHCCS-----EEEESCGGGCCGG--GSCCCSEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHH----HHCCC-----CcccCChhhCCHh--hCCcccEEEecC
Confidence 37999999999999998888987778999998 333333 34322 3344454443221 124689999876
Q ss_pred cCCC----------cccHHHHHHHHHHh---hCCCcEEEEEEeec------ChhHHHHHHHHHhc-CceEEEecCCCCCC
Q 026858 148 VVYI----------EESAAQLVRAMEAL---VADDGVVLLGYQLR------SPEAHKLFWEMCAE-VFLIEKVPHEDLHP 207 (232)
Q Consensus 148 ~~~~----------~~~~~~~l~~l~~~---l~pgG~l~i~~~~r------~~~~~~~~~~~~~~-~f~~~~~~~~~~~~ 207 (232)
+... .+....++..+.++ ++|. +++...-. .......+.+.+.+ +|.+....-. ..
T Consensus 70 PCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vln--a~ 145 (331)
T 3ubt_Y 70 PSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLN--AN 145 (331)
T ss_dssp CGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEE--GG
T ss_pred CCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccccccchhhhhhhhhccCCcEEEEEecc--cc
Confidence 6521 12233455544444 4774 44444322 22334555555554 7765433211 11
Q ss_pred CCC--CCceEEEEEEec
Q 026858 208 DYG--YEETDVYILRKK 222 (232)
Q Consensus 208 ~~~--~~~~~l~~~~~~ 222 (232)
+|. ..+.++|.+..+
T Consensus 146 ~yGvPQ~R~Rvfivg~r 162 (331)
T 3ubt_Y 146 DYGVAQDRKRVFYIGFR 162 (331)
T ss_dssp GTTCSBCCEEEEEEEEE
T ss_pred cCCCCcccceEEEEEEc
Confidence 233 334556665544
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.015 Score=48.28 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=66.3
Q ss_pred CcEEEeCccccHHHHHHHH----hC-CC--cEEEEcchh---------HHHHHHHHHHhcCCCC-CCceEEEEeecCCCc
Q 026858 69 RRAIELGAGCGAAGMAFYL----LG-LA--DIVLTDISP---------VMPALKHNLKRNKPVL-NKSLKTSVLYWNNQD 131 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~----~~-~~--~v~~~D~s~---------~~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~ 131 (232)
.+|||+|-|||+..+.... .+ .. +++.+|..+ .............+.. ..++.. .+-+++..
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L-~l~~GDa~ 176 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSL-KVLLGDAR 176 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEE-EEEESCHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEE-EEEechHH
Confidence 4899999999996543321 12 11 455555421 1122222222221111 122222 22233322
Q ss_pred c-cccCC-CCccEEEEcccCCC---cccH-HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecC
Q 026858 132 Q-INALK-PPFDLVIAADVVYI---EESA-AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPH 202 (232)
Q Consensus 132 ~-~~~~~-~~fD~Ii~~~~~~~---~~~~-~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~ 202 (232)
. ++... ..+|+|+. |.+.. ++.| +.+++.++++++|||++.- +. . ...+...+. .||.|++++.
T Consensus 177 ~~l~~l~~~~~Da~fl-DgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT-Yt-a----ag~VRR~L~~aGF~V~k~~G 247 (308)
T 3vyw_A 177 KRIKEVENFKADAVFH-DAFSPYKNPELWTLDFLSLIKERIDEKGYWVS-YS-S----SLSVRKSLLTLGFKVGSSRE 247 (308)
T ss_dssp HHGGGCCSCCEEEEEE-CCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE-SC-C----CHHHHHHHHHTTCEEEEEEC
T ss_pred HHHhhhcccceeEEEe-CCCCcccCcccCCHHHHHHHHHHhCCCcEEEE-Ee-C----cHHHHHHHHHCCCEEEecCC
Confidence 1 22233 36999997 54432 2322 5788999999999998763 21 1 123445444 6999999863
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.037 Score=46.30 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=58.4
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc---ccC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI---NAL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~---~~~ 136 (232)
..+++ +||=.|+|. |..++.+|+. |+ +|+++|.++. .+.+ +..+.. . .++....... ...
T Consensus 164 ~~~g~--~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~----~~lGa~-----~--~i~~~~~~~~~~~~~~ 229 (340)
T 3s2e_A 164 TRPGQ--WVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLA----RRLGAE-----V--AVNARDTDPAAWLQKE 229 (340)
T ss_dssp CCTTS--EEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHH----HHTTCS-----E--EEETTTSCHHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH----HHcCCC-----E--EEeCCCcCHHHHHHHh
Confidence 45778 899999987 8888888776 88 9999999873 2222 222211 1 1222222110 001
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+.+|+|+-+.. -...+....++++++|++++.
T Consensus 230 ~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 230 IGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEe
Confidence 236898885421 245677888999999998876
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.073 Score=45.08 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=58.5
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---c-cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---I-NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~-~~ 135 (232)
..+++ +||-+|||. |...+.+|+. |+.+|+++|.++. .+.+++ .+.. . .++...... . ..
T Consensus 188 ~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----~--vi~~~~~~~~~~~~~~ 254 (371)
T 1f8f_A 188 VTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT-----H--VINSKTQDPVAAIKEI 254 (371)
T ss_dssp CCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS-----E--EEETTTSCHHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC-----E--EecCCccCHHHHHHHh
Confidence 44778 999999987 8777777765 7757999998873 333221 1211 1 112222110 0 11
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+.+|+|+-+-. ....+....++|+++|++++..
T Consensus 255 ~~gg~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 255 TDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp TTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEeC
Confidence 1236999985422 1356778889999999998764
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.057 Score=44.60 Aligned_cols=75 Identities=17% Similarity=0.060 Sum_probs=47.1
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCc--EEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEE
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLAD--IVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVI 144 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~--v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii 144 (232)
+.+|+||.||.|.+++.+.+.|... +.++|+++. +......|.+. ......|+.+...... ..+.+|+++
T Consensus 16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~---a~~ty~~N~~~----~~~~~~DI~~i~~~~i~~~~~~Dll~ 88 (295)
T 2qrv_A 16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCED---SITVGMVRHQG----KIMYVGDVRSVTQKHIQEWGPFDLVI 88 (295)
T ss_dssp CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHH---HHHHHHHHTTT----CEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHH---HHHHHHHhCCC----CceeCCChHHccHHHhcccCCcCEEE
Confidence 3499999999999999998888744 589999983 22223333321 1334445544331110 124699999
Q ss_pred EcccC
Q 026858 145 AADVV 149 (232)
Q Consensus 145 ~~~~~ 149 (232)
.+.+.
T Consensus 89 ggpPC 93 (295)
T 2qrv_A 89 GGSPC 93 (295)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 87655
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.025 Score=47.60 Aligned_cols=94 Identities=14% Similarity=0.014 Sum_probs=56.9
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---c-cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---I-NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~-~~ 135 (232)
..++. +||=+|+|+ |.+++.+|+. |+.+|+++|.++. ++.+++ .+.. . .++...... . ..
T Consensus 164 ~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-----~--vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 164 IKLGD--TVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT-----D--IINYKNGDIVEQILKA 230 (352)
T ss_dssp CCTTC--CEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC-----E--EECGGGSCHHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc-----e--EEcCCCcCHHHHHHHH
Confidence 34778 899999987 7777777776 7768999999873 222222 2211 1 112111110 0 01
Q ss_pred CCC-CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 136 LKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 136 ~~~-~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
..+ .+|+|+-+ ... ...+....++|+++|+++..
T Consensus 231 t~g~g~D~v~d~--~g~----~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 231 TDGKGVDKVVIA--GGD----VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TTTCCEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEEC
T ss_pred cCCCCCCEEEEC--CCC----hHHHHHHHHHHhcCCEEEEe
Confidence 122 59999853 222 23567788899999998875
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.26 Score=42.05 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=59.6
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c---cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I---NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~---~~ 135 (232)
..++. +||-+|||. |.+++.+|+. |+.+|+++|.++. ++.+ +..+ . . ..+...... . ..
T Consensus 183 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----~~lG----a--~--~i~~~~~~~~~~~~~~ 248 (398)
T 2dph_A 183 VKPGS--HVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLL----SDAG----F--E--TIDLRNSAPLRDQIDQ 248 (398)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH----HTTT----C--E--EEETTSSSCHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHcC----C--c--EEcCCCcchHHHHHHH
Confidence 34778 999999987 8888777765 7768999998873 2222 2222 1 1 233332211 0 00
Q ss_pred -CCC-CccEEEEcccCCCc--------ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 -LKP-PFDLVIAADVVYIE--------ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 -~~~-~fD~Ii~~~~~~~~--------~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+ .+|+|+-+-.-... ......+....++++++|++++..
T Consensus 249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 249 ILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred HhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 122 69999864321110 012346778889999999987653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.66 Score=38.84 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=57.6
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC---Cc---cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN---QD---QI 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~---~~---~~ 133 (232)
..++. +||-+|+|. |..++.+|+. |+.+|+++|.++. ++.++ ..+.. .. ++... .. ..
T Consensus 169 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~-----~v--i~~~~~~~~~~~~~i 235 (356)
T 1pl8_A 169 VTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK----EIGAD-----LV--LQISKESPQEIARKV 235 (356)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTCS-----EE--EECSSCCHHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC-----EE--EcCcccccchHHHHH
Confidence 34778 999999986 7777777765 7768999998873 22222 22211 11 12220 00 00
Q ss_pred -ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 134 -NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 134 -~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
....+.+|+|+-+-. ....+....++|+++|++++..
T Consensus 236 ~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 236 EGQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp HHHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred HHHhCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEe
Confidence 001146999995421 1345677888999999998764
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.11 Score=44.06 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=55.7
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +||-+|+|. |...+.+|+. |+ +|+++|.++. .+.+++ .+.. .. ++...........+.
T Consensus 192 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~----lGa~-----~v--i~~~~~~~~~~~~~g 257 (369)
T 1uuf_A 192 AGPGK--KVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD-----EV--VNSRNADEMAAHLKS 257 (369)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS-----EE--EETTCHHHHHTTTTC
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc-----EE--eccccHHHHHHhhcC
Confidence 34778 999999986 7777777765 77 7999998873 333322 1211 11 122211111112257
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+-. ... .+....++++++|+++...
T Consensus 258 ~Dvvid~~g--~~~----~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 258 FDFILNTVA--APH----NLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EEEEEECCS--SCC----CHHHHHTTEEEEEEEEECC
T ss_pred CCEEEECCC--CHH----HHHHHHHHhccCCEEEEec
Confidence 999985432 222 3455678889999988753
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.25 Score=41.29 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=56.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +||=+|+|. |..++.+|+. |+ +|+++|.++. .+.++ ..+.. ..+ .+... ....
T Consensus 174 ~~~g~--~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~----~lGa~----~v~-----~~~~~---~~~~ 234 (348)
T 3two_A 174 VTKGT--KVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDAL----SMGVK----HFY-----TDPKQ---CKEE 234 (348)
T ss_dssp CCTTC--EEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHH----HTTCS----EEE-----SSGGG---CCSC
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH----hcCCC----eec-----CCHHH---HhcC
Confidence 45778 999999987 7777777765 88 9999998873 33332 22211 111 11111 1237
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+- .... .+....++++++|++++..
T Consensus 235 ~D~vid~~--g~~~----~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 235 LDFIISTI--PTHY----DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp EEEEEECC--CSCC----CHHHHHTTEEEEEEEEECC
T ss_pred CCEEEECC--CcHH----HHHHHHHHHhcCCEEEEEC
Confidence 99998532 2222 3556678899999998864
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.4 Score=40.85 Aligned_cols=100 Identities=21% Similarity=0.203 Sum_probs=60.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc----ccc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ----INA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~----~~~ 135 (232)
..++. +||=+|||. |++++.+|+. |+.+|+++|.++. ++.++ ..+ . . ..+...... ...
T Consensus 183 ~~~g~--~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~----~lG----a--~--~i~~~~~~~~~~~v~~ 248 (398)
T 1kol_A 183 VGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQG----F--E--IADLSLDTPLHEQIAA 248 (398)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTT----C--E--EEETTSSSCHHHHHHH
T ss_pred CCCCC--EEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH----HcC----C--c--EEccCCcchHHHHHHH
Confidence 34778 999999987 8888888775 7767999998873 22222 222 1 1 223332211 000
Q ss_pred -CC-CCccEEEEcccCC---------CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 -LK-PPFDLVIAADVVY---------IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 -~~-~~fD~Ii~~~~~~---------~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. ..+|+|+-+-.-. +.......+....++++++|++++..
T Consensus 249 ~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 249 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 11 3699999643211 01122346778889999999988753
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.086 Score=44.68 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=36.8
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeec
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYW 127 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~ 127 (232)
.|||||.|+|.++..++.. .+.+++++++++. +...+... . ..++.....|.
T Consensus 61 ~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~--~----~~~l~ii~~D~ 114 (353)
T 1i4w_A 61 KVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF--E----GSPLQILKRDP 114 (353)
T ss_dssp EEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT--T----TSSCEEECSCT
T ss_pred EEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc--c----CCCEEEEECCc
Confidence 8999999999999999875 4459999999985 33443322 1 12346666554
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.21 Score=42.26 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=58.3
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---c-c-
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---I-N- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~-~- 134 (232)
..++. +||=+|+|. |.+++.+|+. |+.+|+++|.++. .+.++. .+.. . ..+...... . .
T Consensus 180 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~-----~--vi~~~~~~~~~~i~~~ 246 (370)
T 4ej6_A 180 IKAGS--TVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT-----A--TVDPSAGDVVEAIAGP 246 (370)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS-----E--EECTTSSCHHHHHHST
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC-----E--EECCCCcCHHHHHHhh
Confidence 44778 999999976 7777777765 7768999998873 222221 2211 1 112211110 0 0
Q ss_pred --cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 --ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+.+|+|+-+- . ....+....++++++|++++..
T Consensus 247 ~~~~~gg~Dvvid~~--G----~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 247 VGLVPGGVDVVIECA--G----VAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TSSSTTCEEEEEECS--C----CHHHHHHHHHHEEEEEEEEECS
T ss_pred hhccCCCCCEEEECC--C----CHHHHHHHHHHhccCCEEEEEe
Confidence 1124799999542 1 1346778889999999998864
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.46 Score=40.19 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=58.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~----- 133 (232)
..++. +||=+|+|. |++++.+|+. |+.+|+++|.++. ++.+ +..+.. . ..+... ....
T Consensus 191 ~~~g~--~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a----~~lGa~-----~--vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 191 VEPGS--NVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETA----KKFGVN-----E--FVNPKDHDKPIQEVIV 257 (378)
T ss_dssp CCTTC--CEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH----HTTTCC-----E--EECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----HHcCCc-----E--EEccccCchhHHHHHH
Confidence 44778 899999986 7777777765 8768999998873 3322 222211 1 122221 0110
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
....+.+|+|+-+-. -...+....++++++ |++++..
T Consensus 258 ~~~~gg~D~vid~~g------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 258 DLTDGGVDYSFECIG------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HhcCCCCCEEEECCC------CHHHHHHHHHHhhccCCEEEEEc
Confidence 111247999995421 145677888999996 9988753
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=0.6 Score=39.01 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=56.7
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Ccc---ccc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQ---INA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~---~~~ 135 (232)
..++. +||-+|+|. |...+.+|+. |+ +|+++|.++. .+.++ ..+.. . .++..+ ... ...
T Consensus 166 ~~~g~--~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~----~lGa~-----~--~~~~~~~~~~~~~i~~ 231 (352)
T 1e3j_A 166 VQLGT--TVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAK----NCGAD-----V--TLVVDPAKEEESSIIE 231 (352)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH----HTTCS-----E--EEECCTTTSCHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH----HhCCC-----E--EEcCcccccHHHHHHH
Confidence 34778 999999876 7777777765 87 6999998873 22222 22211 1 122221 110 000
Q ss_pred -C----CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 -L----KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 -~----~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. ...+|+|+-+-. ....+....++++++|+++...
T Consensus 232 ~~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 232 RIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECS
T ss_pred HhccccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 246999996422 1345677888999999998764
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.35 Score=40.61 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=58.4
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----c
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-----~ 134 (232)
..++. +||=+|+|. |..++.+|+. |+..|+++|.++. .+.+++ . .... +.+. .+-....+. .
T Consensus 177 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~-l---~~~~---~~~~-~~~~~~~~~~~~v~~ 246 (363)
T 3m6i_A 177 VRLGD--PVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKE-I---CPEV---VTHK-VERLSAEESAKKIVE 246 (363)
T ss_dssp CCTTC--CEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH-H---CTTC---EEEE-CCSCCHHHHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---chhc---cccc-ccccchHHHHHHHHH
Confidence 44778 899999977 7777777766 8855999998874 333332 1 1111 1111 110000100 0
Q ss_pred cC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 AL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. ...+|+|+-+- . -+..+....++++++|++++..
T Consensus 247 ~t~g~g~Dvvid~~--g----~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 247 SFGGIEPAVALECT--G----VESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HTSSCCCSEEEECS--C----CHHHHHHHHHHSCTTCEEEECC
T ss_pred HhCCCCCCEEEECC--C----ChHHHHHHHHHhcCCCEEEEEc
Confidence 01 23699999542 1 1346777889999999998864
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.91 E-value=0.097 Score=44.12 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=54.7
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC-cccccCCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ-DQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~ 138 (232)
..++. +||-+|+|. |...+.+|+. |+ +|+++|.++. .+.+++ .+.. .. ++.... .......+
T Consensus 177 ~~~g~--~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~v--~~~~~~~~~~~~~~~ 242 (360)
T 1piw_A 177 CGPGK--KVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD-----HY--IATLEEGDWGEKYFD 242 (360)
T ss_dssp CSTTC--EEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS-----EE--EEGGGTSCHHHHSCS
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH----cCCC-----EE--EcCcCchHHHHHhhc
Confidence 44778 999999976 7777777765 88 8999998763 333332 1211 11 222221 11111124
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+|+|+-+-...... .+....++++++|+++..
T Consensus 243 ~~D~vid~~g~~~~~----~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 243 TFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp CEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEEC
T ss_pred CCCEEEECCCCCcHH----HHHHHHHHhcCCCEEEEe
Confidence 799998643320011 234456788999998764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.33 Score=40.44 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=56.2
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---cC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---AL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~~ 136 (232)
..+++ +||-+|+|. |.....+++. |+ +|+++|.++. ++.++ ..+.. . .++..+..... ..
T Consensus 162 ~~~g~--~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~----~lGa~-----~--~~d~~~~~~~~~~~~~ 227 (339)
T 1rjw_A 162 AKPGE--WVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAK----ELGAD-----L--VVNPLKEDAAKFMKEK 227 (339)
T ss_dssp CCTTC--EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH----HTTCS-----E--EECTTTSCHHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HCCCC-----E--EecCCCccHHHHHHHH
Confidence 34677 999999975 7766666655 87 9999998873 32222 22211 1 12332221000 00
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.+.+|+|+-+.. ....++...++++++|+++..
T Consensus 228 ~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 228 VGGVHAAVVTAV------SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred hCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 146999986432 134677788899999998875
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.37 Score=41.51 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=37.6
Q ss_pred cCCCCCcEEEeCccccHHHHHHH-Hh-C-CCcEEEEcchh-HHHHHHHHHHh
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFY-LL-G-LADIVLTDISP-VMPALKHNLKR 111 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la-~~-~-~~~v~~~D~s~-~~~~~~~n~~~ 111 (232)
.++. .|+|+||+.|..++.++ +. + ..+|++++.++ ....+++|+..
T Consensus 225 ~~~~--~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSE--KMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSC--EEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCC--EEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4667 99999999999998887 44 3 35999999999 47778888876
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.68 Score=38.91 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=56.3
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----c
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-----~ 134 (232)
..++. +||=+|+|. |..++.+|+. |+ +|+++|.++. ++.++ ..+.. . .++ ....+. .
T Consensus 187 ~~~g~--~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~----~lGa~-----~--vi~-~~~~~~~~~v~~ 251 (363)
T 3uog_A 187 LRAGD--RVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAF----ALGAD-----H--GIN-RLEEDWVERVYA 251 (363)
T ss_dssp CCTTC--EEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH----HHTCS-----E--EEE-TTTSCHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHH----HcCCC-----E--EEc-CCcccHHHHHHH
Confidence 44778 999999887 7777777765 88 9999998873 33322 12211 1 122 111110 0
Q ss_pred cCC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
... ..+|+|+-+-. .. .+....++++++|++++..
T Consensus 252 ~~~g~g~D~vid~~g---~~----~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 252 LTGDRGADHILEIAG---GA----GLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp HHTTCCEEEEEEETT---SS----CHHHHHHHEEEEEEEEEEC
T ss_pred HhCCCCceEEEECCC---hH----HHHHHHHHhhcCCEEEEEe
Confidence 112 36999996543 12 3566778899999998864
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.95 Score=36.35 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=56.1
Q ss_pred ccccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc--
Q 026858 61 LLDFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-- 134 (232)
Q Consensus 61 ~~~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-- 134 (232)
++.+.++ .+|=-|++.|+ .+..+++.|+ +|+.+|.++. +......+...+ .++.....|+.+.....
T Consensus 4 ~f~L~gK--valVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g----~~~~~~~~Dv~~~~~v~~~ 76 (255)
T 4g81_D 4 LFDLTGK--TALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKG----YDAHGVAFDVTDELAIEAA 76 (255)
T ss_dssp TTCCTTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTT----CCEEECCCCTTCHHHHHHH
T ss_pred CcCCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHH
Confidence 4467889 88988888776 4466677798 9999999873 555555444433 34567777877765321
Q ss_pred -----cCCCCccEEEEcccCC
Q 026858 135 -----ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 -----~~~~~fD~Ii~~~~~~ 150 (232)
..-++.|++|.+..+.
T Consensus 77 ~~~~~~~~G~iDiLVNNAG~~ 97 (255)
T 4g81_D 77 FSKLDAEGIHVDILINNAGIQ 97 (255)
T ss_dssp HHHHHHTTCCCCEEEECCCCC
T ss_pred HHHHHHHCCCCcEEEECCCCC
Confidence 1246799999876553
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.19 Score=41.89 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=34.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKH 107 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~ 107 (232)
..++. .|||-.||+|.+++.+.+.|. +++++|+++. ...+..
T Consensus 250 ~~~~~--~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~ 292 (323)
T 1boo_A 250 TEPDD--LVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAF 292 (323)
T ss_dssp CCTTC--EEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHG
T ss_pred CCCCC--EEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHH
Confidence 34777 999999999999999998887 9999999994 333333
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.53 Score=39.45 Aligned_cols=109 Identities=12% Similarity=0.158 Sum_probs=67.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCC------------------CCCCceEEEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKP------------------VLNKSLKTSV 124 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~------------------~~~~~i~~~~ 124 (232)
+.. .|+.||||.......+... +. +++=+|..+++..-++.+..... ....+.....
T Consensus 97 ~~~--qVV~LGaGlDTr~~RL~~~~~~~-~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~ 173 (334)
T 1rjd_A 97 EKV--QVVNLGCGSDLRMLPLLQMFPHL-AYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 173 (334)
T ss_dssp SSE--EEEEETCTTCCTHHHHHHHCTTE-EEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEE
T ss_pred CCc--EEEEeCCCCccHHHHhcCcCCCC-EEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEe
Confidence 445 9999999999888777654 33 56666665555544444433210 0135577888
Q ss_pred eecCCCcc----cc--cCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 125 LYWNNQDQ----IN--ALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 125 ~d~~~~~~----~~--~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.|..+..- +. +......++++-.+++ ..+....+++.+.+.. |+|.+++.+.
T Consensus 174 ~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~ 233 (334)
T 1rjd_A 174 CDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDP 233 (334)
T ss_dssp CCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred cCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence 88776321 11 1123466777655553 5677888889888877 6777765554
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.77 Score=38.01 Aligned_cols=109 Identities=10% Similarity=0.081 Sum_probs=66.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc--c--ccCCC-CccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--I--NALKP-PFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--~--~~~~~-~fD~I 143 (232)
.|++||||.=.....+... +. +++-+|...++...++-+.........+..+...|..+... + .+.+. ..-++
T Consensus 105 QvV~LGaGlDTra~Rl~~~~~~-~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~~ 183 (310)
T 2uyo_A 105 QFVILASGLDSRAYRLDWPTGT-TVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAW 183 (310)
T ss_dssp EEEEETCTTCCHHHHSCCCTTC-EEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEE
T ss_pred eEEEeCCCCCchhhhccCCCCc-EEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEEE
Confidence 8999999986554444421 33 78888865556555555544332234556777777766211 0 11121 23445
Q ss_pred EEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
++-.+++ ..+....+++.+...+.||+.+++.....
T Consensus 184 i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 184 LAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 5544443 44577888999999888999888876443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.59 Score=35.43 Aligned_cols=93 Identities=18% Similarity=0.068 Sum_probs=54.5
Q ss_pred ccCCCCCcEEEeCc--cccHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c
Q 026858 63 DFHSTRRRAIELGA--GCGAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc--GtG~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~ 134 (232)
..+++ +||-.|+ |.|.....+++ .|+ +|+++|.++. ...+ +..+. . . ..+..+.... .
T Consensus 36 ~~~g~--~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~----~~~g~----~-~--~~d~~~~~~~~~~~~ 101 (198)
T 1pqw_A 36 LSPGE--RVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREML----SRLGV----E-Y--VGDSRSVDFADEILE 101 (198)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH----HTTCC----S-E--EEETTCSTHHHHHHH
T ss_pred CCCCC--EEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH----HHcCC----C-E--EeeCCcHHHHHHHHH
Confidence 34677 9999995 33665555444 488 8999998873 2222 21121 1 1 1243332210 0
Q ss_pred cC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 AL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. .+.+|+|+.+.. ...+....++++++|++++..
T Consensus 102 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 102 LTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp HTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred HhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence 01 236999996432 246778889999999988764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=1.4 Score=36.99 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=58.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~----- 133 (232)
..++. +||=+|+|. |...+.+|+. |+.+|+++|.++. .+.++ ..+.. . .++... ..+.
T Consensus 189 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~-----~--vi~~~~~~~~~~~~i~ 255 (373)
T 1p0f_A 189 VTPGS--TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI----ELGAT-----E--CLNPKDYDKPIYEVIC 255 (373)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH----HTTCS-----E--EECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH----HcCCc-----E--EEecccccchHHHHHH
Confidence 44778 999999886 7777777765 7768999998873 33322 12211 1 112221 0100
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
....+.+|+|+-+-. . ...+....++++++ |++++..
T Consensus 256 ~~t~gg~Dvvid~~g--~----~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 256 EKTNGGVDYAVECAG--R----IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHTTSCBSEEEECSC--C----HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHhCCCCCEEEECCC--C----HHHHHHHHHHHhcCCCEEEEEc
Confidence 011237999995421 1 34677888999999 9988754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.27 Score=40.93 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=56.6
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc---c--
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI---N-- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~---~-- 134 (232)
..+++ +||=.|+|. |.+++.+|+. |+..++++|.++. ++.+ +..+.. . ..+....... .
T Consensus 158 ~~~g~--~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a----~~lGa~-----~--~i~~~~~~~~~~~~~~ 224 (346)
T 4a2c_A 158 GCENK--NVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALA----KSFGAM-----Q--TFNSSEMSAPQMQSVL 224 (346)
T ss_dssp CCTTS--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH----HHTTCS-----E--EEETTTSCHHHHHHHH
T ss_pred cCCCC--EEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHH----HHcCCe-----E--EEeCCCCCHHHHHHhh
Confidence 44778 999999987 6666666665 7767889998873 2222 222211 1 1222221110 0
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.....+|+|+-.- .....++...++++++|++.+..
T Consensus 225 ~~~~g~d~v~d~~------G~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 225 RELRFNQLILETA------GVPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp GGGCSSEEEEECS------CSHHHHHHHHHHCCTTCEEEECC
T ss_pred cccCCcccccccc------cccchhhhhhheecCCeEEEEEe
Confidence 0123578887532 12456777888999999998864
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.28 Score=40.96 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=57.3
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc--ccc-cC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD--QIN-AL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~ 136 (232)
..++. +||=+|+|. |..++.+|+. +..+|+++|.++. .+.+ +..+.. .. .+..... ... ..
T Consensus 169 ~~~g~--~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~----~~lGa~-----~~--i~~~~~~~~~v~~~t 235 (345)
T 3jv7_A 169 LGPGS--TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA----REVGAD-----AA--VKSGAGAADAIRELT 235 (345)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH----HHTTCS-----EE--EECSTTHHHHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----HHcCCC-----EE--EcCCCcHHHHHHHHh
Confidence 34677 999999987 7777777765 4459999999873 2222 222211 11 1111111 000 01
Q ss_pred C-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 K-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. ..+|+|+-+- . -+..+....++|+++|++++..
T Consensus 236 ~g~g~d~v~d~~--G----~~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 236 GGQGATAVFDFV--G----AQSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp GGGCEEEEEESS--C----CHHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCeEEEECC--C----CHHHHHHHHHHHhcCCEEEEEC
Confidence 1 2699998532 1 1346788889999999998863
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.99 Score=37.94 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCCCCcEEEeC-ccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc--cc-ccCC
Q 026858 65 HSTRRRAIELG-AGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD--QI-NALK 137 (232)
Q Consensus 65 ~~~~~~VLElG-cGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~~ 137 (232)
++. +||=+| +|. |..++.+|+. +..+|+++|.++. .+.++ ..+.. . .++..... .. ....
T Consensus 171 ~g~--~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~----~lGad-----~--vi~~~~~~~~~v~~~~~ 237 (363)
T 4dvj_A 171 AAP--AILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK----SLGAH-----H--VIDHSKPLAAEVAALGL 237 (363)
T ss_dssp SEE--EEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH----HTTCS-----E--EECTTSCHHHHHHTTCS
T ss_pred CCC--EEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH----HcCCC-----E--EEeCCCCHHHHHHHhcC
Confidence 567 899998 666 8888888875 3349999999873 33322 22211 1 11211110 00 1112
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+.+|+|+-+- .-...+..+.++++++|++++.
T Consensus 238 ~g~Dvvid~~------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 238 GAPAFVFSTT------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp CCEEEEEECS------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred CCceEEEECC------CchhhHHHHHHHhcCCCEEEEE
Confidence 4699998532 2345678888999999999876
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.65 E-value=0.75 Score=38.75 Aligned_cols=95 Identities=17% Similarity=0.149 Sum_probs=57.6
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~----- 133 (232)
..+++ +||-+|+|. |...+.+|+. |+.+|+++|.++. ++.++ ..+.. . .++..+ ....
T Consensus 190 ~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~-----~--vi~~~~~~~~~~~~~~ 256 (374)
T 1cdo_A 190 VEPGS--TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGAT-----D--FVNPNDHSEPISQVLS 256 (374)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCC-----E--EECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HhCCc-----e--EEeccccchhHHHHHH
Confidence 34677 999999876 7777777765 7657999998873 33332 12211 1 122221 0100
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
....+.+|+|+-+-. ....+....++++++ |++++..
T Consensus 257 ~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 257 KMTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HHhCCCCCEEEECCC------CHHHHHHHHHHhhcCCcEEEEEc
Confidence 001237999995421 134677888999999 9988753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.21 Score=42.79 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=29.2
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
..++. +||=+|+|. |..++.+|+. |+.+|+++|.++.
T Consensus 211 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~ 249 (404)
T 3ip1_A 211 IRPGD--NVVILGGGPIGLAAVAILKHAGASKVILSEPSEV 249 (404)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 34777 899999976 7777777765 7768999998873
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.62 Score=38.84 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=56.1
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---ccc-CC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INA-LK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~-~~ 137 (232)
+++ +||-+|+|. |...+.+|+. |+.+|+++|.++. ++.++ ..+.. . .++...... ... ..
T Consensus 167 ~g~--~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~----~~Ga~-----~--~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 167 SGK--SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK----KVGAD-----Y--VINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTC--CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH----HHTCS-----E--EECTTTSCHHHHHHHHTT
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH----HhCCC-----E--EECCCCcCHHHHHHHHcC
Confidence 778 999999975 7777777665 7668999998873 22222 11211 1 122222110 000 11
Q ss_pred -CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 -PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 -~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|+|+-+-. ....+....++++++|+++...
T Consensus 234 g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 234 GNGVDVFLEFSG------APKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp TSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 25999996432 1346777888999999988764
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=1.7 Score=36.42 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=57.6
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Ccc----c-
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQ----I- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~----~- 133 (232)
..++. +||=+|+|. |.+.+.+|+. |+.+|+++|.++. .+.+++ .+.. . .++..+ ..+ .
T Consensus 188 ~~~g~--~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~-----~--vi~~~~~~~~~~~~v~ 254 (373)
T 2fzw_A 188 LEPGS--VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT-----E--CINPQDFSKPIQEVLI 254 (373)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS-----E--EECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc-----e--EeccccccccHHHHHH
Confidence 34777 999999876 7777777765 7767999998873 333322 1211 1 112221 010 0
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
....+.+|+|+-+-. ....+....++++++ |++++..
T Consensus 255 ~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 255 EMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred HHhCCCCCEEEECCC------cHHHHHHHHHhhccCCcEEEEEe
Confidence 011237999985421 134677888999999 9988753
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=91.40 E-value=0.17 Score=44.74 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=29.7
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchh
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~ 100 (232)
.++++||.||.|.+++.+.+.|...+.++|+++
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~ 120 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNK 120 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCH
Confidence 469999999999999999888886789999998
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=91.30 E-value=1.1 Score=36.51 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=64.5
Q ss_pred ccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC---CCc
Q 026858 76 AGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV---YIE 152 (232)
Q Consensus 76 cGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~---~~~ 152 (232)
++.|-.+-.+.+....++..+|..-.+. ...-.....+.+-.....+|++.+.. .+++|+|++.-.. ++.
T Consensus 150 ~~~~~~~~~~~k~~g~~vl~v~~~~~~p---~k~v~wi~Pi~GAt~~~~lDfg~p~~----~~k~DvV~SDMApn~sGh~ 222 (320)
T 2hwk_A 150 HPQSDFSSFVSKLKGRTVLVVGEKLSVP---GKMVDWLSDRPEATFRARLDLGIPGD----VPKYDIIFVNVRTPYKYHH 222 (320)
T ss_dssp CCCCCCHHHHHTSSCSEEEEEESCCCCT---TSEEEEEESSTTCSEECCGGGCSCTT----SCCEEEEEEECCCCCCSCH
T ss_pred cCCCCHHHHHhhCCCcEEEEEecccccC---CceeEeeccCCCceeecccccCCccc----cCcCCEEEEcCCCCCCCcc
Confidence 4455566666666333777775332000 00000000011111222555555442 3679999984433 121
Q ss_pred ----ccHHH----HHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCC
Q 026858 153 ----ESAAQ----LVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHE 203 (232)
Q Consensus 153 ----~~~~~----~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~ 203 (232)
.+... ++.....+|+|||.+++-...-.....+.+...+.+.|.....-+.
T Consensus 223 yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vKP 281 (320)
T 2hwk_A 223 YQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKP 281 (320)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECC
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeeeCC
Confidence 22222 3444556789999999876544433578888999999976665443
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.20 E-value=0.4 Score=39.92 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=31.1
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~ 100 (232)
.++. .|||-.||+|.+++.+.+.|. +++++|+++
T Consensus 241 ~~~~--~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~ 274 (319)
T 1eg2_A 241 HPGS--TVLDFFAGSGVTARVAIQEGR-NSICTDAAP 274 (319)
T ss_dssp CTTC--EEEETTCTTCHHHHHHHHHTC-EEEEEESST
T ss_pred CCCC--EEEecCCCCCHHHHHHHHcCC-cEEEEECCc
Confidence 3677 999999999999999999887 999999998
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.34 Score=40.69 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=53.3
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||=+|+|. |..++.+|+. |+ +|+++|.++. ...+.+ ..+.. .+ .+..+........+.+|
T Consensus 180 ~g~--~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~---~v----i~~~~~~~~~~~~~g~D 246 (357)
T 2cf5_A 180 PGL--RGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGAD---DY----VIGSDQAKMSELADSLD 246 (357)
T ss_dssp TTC--EEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCCS---CE----EETTCHHHHHHSTTTEE
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCCc---ee----eccccHHHHHHhcCCCC
Confidence 677 899999876 7777777765 88 8999998862 222221 22211 11 12211111111234699
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-+-. ... .+....++++++|+++...
T Consensus 247 ~vid~~g--~~~----~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 247 YVIDTVP--VHH----ALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp EEEECCC--SCC----CSHHHHTTEEEEEEEEECS
T ss_pred EEEECCC--ChH----HHHHHHHHhccCCEEEEeC
Confidence 9985432 222 2344567889999988753
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.57 Score=39.55 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=57.4
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~----- 133 (232)
..++. +||=+|+|. |..++.+|+. |+.+|+++|.++. ++.++ ..+.. . .++... ..+.
T Consensus 193 ~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~-----~--vi~~~~~~~~~~~~v~ 259 (376)
T 1e3i_A 193 VTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGAT-----D--CLNPRELDKPVQDVIT 259 (376)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS-----E--EECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc-----E--EEccccccchHHHHHH
Confidence 34677 999999886 7777777765 7767999998873 33322 12211 1 122221 0100
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
....+.+|+|+-+-. . ...+....++++++ |++++..
T Consensus 260 ~~~~~g~Dvvid~~G--~----~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 260 ELTAGGVDYSLDCAG--T----AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHTSCBSEEEESSC--C----HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHhCCCccEEEECCC--C----HHHHHHHHHHhhcCCCEEEEEC
Confidence 001237999985421 1 34677888999999 9988753
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.98 E-value=1.1 Score=37.79 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=57.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~----- 133 (232)
..+++ +||=+|+|. |...+.+|+. |+.+|+++|.++. ++.++ ..+.. . .++... ..+.
T Consensus 189 ~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~----~lGa~-----~--vi~~~~~~~~~~~~~~ 255 (374)
T 2jhf_A 189 VTQGS--TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK----EVGAT-----E--CVNPQDYKKPIQEVLT 255 (374)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS-----E--EECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HhCCc-----e--EecccccchhHHHHHH
Confidence 34677 999999876 7777777765 7657999998873 33332 12211 1 122221 0100
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
....+.+|+|+-+-. . ...+....++++++ |++++..
T Consensus 256 ~~~~~g~D~vid~~g--~----~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 256 EMSNGGVDFSFEVIG--R----LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHTTSCBSEEEECSC--C----HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHhCCCCcEEEECCC--C----HHHHHHHHHHhhcCCcEEEEec
Confidence 011237999985421 1 34677788899999 9988753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.97 Score=37.18 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=55.0
Q ss_pred ccCCCCCcEEEeC-ccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELG-AGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElG-cGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +||=+| +|. |..++.+|+. |+ ++++++.++..+.+ +..+.. . .++.............
T Consensus 150 ~~~g~--~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~----~~lGa~-----~--~i~~~~~~~~~~~~~g 215 (321)
T 3tqh_A 150 VKQGD--VVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFL----KALGAE-----Q--CINYHEEDFLLAISTP 215 (321)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHH----HHHTCS-----E--EEETTTSCHHHHCCSC
T ss_pred CCCCC--EEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHH----HHcCCC-----E--EEeCCCcchhhhhccC
Confidence 45778 999997 666 8888877766 88 89988754432222 222211 1 1232222201111246
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+-+-. -+ .+....++++++|+++...
T Consensus 216 ~D~v~d~~g------~~-~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 216 VDAVIDLVG------GD-VGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp EEEEEESSC------HH-HHHHHGGGEEEEEEEEECC
T ss_pred CCEEEECCC------cH-HHHHHHHhccCCCEEEEeC
Confidence 999985321 12 2367788999999998763
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.86 Score=37.65 Aligned_cols=93 Identities=12% Similarity=0.048 Sum_probs=55.0
Q ss_pred ccCCCCCcEEEeCc--cccHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----
Q 026858 63 DFHSTRRRAIELGA--GCGAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGc--GtG~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----- 133 (232)
..+++ +||-.|| |.|.....+++ .|+ +|+++|.++. +..+ +..+.. ...|..+....
T Consensus 143 ~~~g~--~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~----~~~g~~-------~~~d~~~~~~~~~~~~ 208 (333)
T 1v3u_A 143 VKGGE--TVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL----KQIGFD-------AAFNYKTVNSLEEALK 208 (333)
T ss_dssp CCSSC--EEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH----HHTTCS-------EEEETTSCSCHHHHHH
T ss_pred CCCCC--EEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH----HhcCCc-------EEEecCCHHHHHHHHH
Confidence 34677 9999998 34665555554 488 9999998763 3222 111211 12244331111
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
....+.+|+++.+.. ...+....++++++|++++..
T Consensus 209 ~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 209 KASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp HHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred HHhCCCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence 011246999986543 134677788899999988754
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.57 Score=39.48 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +||=+|+|. |...+.+|+. |+ +|+++|.++. ...+.+ ..+.. . ..+..+........+.+|
T Consensus 187 ~g~--~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~-----~--v~~~~~~~~~~~~~~~~D 253 (366)
T 1yqd_A 187 PGK--HIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALK---NFGAD-----S--FLVSRDQEQMQAAAGTLD 253 (366)
T ss_dssp TTC--EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHH---TSCCS-----E--EEETTCHHHHHHTTTCEE
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---hcCCc-----e--EEeccCHHHHHHhhCCCC
Confidence 677 899999876 6666666655 87 8999998762 222221 11211 1 122222111111234699
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+-+-. ... .++...++++++|+++...
T Consensus 254 ~vid~~g--~~~----~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 254 GIIDTVS--AVH----PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp EEEECCS--SCC----CSHHHHHHEEEEEEEEECC
T ss_pred EEEECCC--cHH----HHHHHHHHHhcCCEEEEEc
Confidence 9986432 111 2345567889999988753
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.46 Score=39.63 Aligned_cols=94 Identities=16% Similarity=0.136 Sum_probs=56.1
Q ss_pred ccCCCCCcEEEeCc--cccHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGA--GCGAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc--GtG~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
..+++ +||-+|+ |.|.....+++ .|+ +|+++|.++. .+.++ ..+.. ...|..+.....
T Consensus 167 ~~~g~--~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~----~~g~~-------~~~d~~~~~~~~~~~~ 232 (347)
T 2hcy_A 167 LMAGH--WVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFR----SIGGE-------VFIDFTKEKDIVGAVL 232 (347)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHH----HTTCC-------EEEETTTCSCHHHHHH
T ss_pred CCCCC--EEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHH----HcCCc-------eEEecCccHhHHHHHH
Confidence 34778 9999998 34666666655 487 9999998763 32222 11211 122443222110
Q ss_pred -cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 -ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 -~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+.+|+|+.+.. ....++.+.+.|+++|+++...
T Consensus 233 ~~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 233 KATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEECC
T ss_pred HHhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEEe
Confidence 01126999986532 1346777888899999988754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=1.5 Score=36.21 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=56.6
Q ss_pred ccCCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c
Q 026858 63 DFHSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~ 134 (232)
..+++ +||=.|+ | .|.....+++. |+ +|+++|.++. .+.+. +..+.. ...+....... .
T Consensus 147 ~~~g~--~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~---~~~g~~-------~~~~~~~~~~~~~~~~ 213 (336)
T 4b7c_A 147 PKNGE--TVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV---EELGFD-------GAIDYKNEDLAAGLKR 213 (336)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH---HTTCCS-------EEEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH---HHcCCC-------EEEECCCHHHHHHHHH
Confidence 44778 9999998 3 37777666654 88 9999998873 22221 222211 11233222210 0
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+.+|+|+-+.. ...+....++++++|++++..
T Consensus 214 ~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 214 ECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp HCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred hcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEe
Confidence 11246999986432 136778888999999998764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.10 E-value=0.72 Score=38.30 Aligned_cols=42 Identities=10% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCccEEEEcccCCCc--------------ccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 137 KPPFDLVIAADVVYIE--------------ESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~--------------~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
.++||+|++.++.... ..+...+..+.++|+|||.+++....
T Consensus 31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 4579999986665332 14778888999999999999997543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.81 E-value=0.72 Score=38.62 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=54.8
Q ss_pred CCCcEEEeCccc-cHHH-HHHH-Hh-CCCcEEEEcchhH----HHHHHHHHHhcCCCCCCceEEEEeecCCCcc--cccC
Q 026858 67 TRRRAIELGAGC-GAAG-MAFY-LL-GLADIVLTDISPV----MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--INAL 136 (232)
Q Consensus 67 ~~~~VLElGcGt-G~~s-~~la-~~-~~~~v~~~D~s~~----~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--~~~~ 136 (232)
. +||=+|+|. |..+ +.+| +. |+.+|+++|.++. .+.+ +..+. ... +...... ....
T Consensus 174 ~--~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~----~~lGa------~~v--~~~~~~~~~i~~~ 239 (357)
T 2b5w_A 174 S--SAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII----EELDA------TYV--DSRQTPVEDVPDV 239 (357)
T ss_dssp C--EEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH----HHTTC------EEE--ETTTSCGGGHHHH
T ss_pred C--EEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH----HHcCC------ccc--CCCccCHHHHHHh
Confidence 7 999999976 8877 8888 65 7744999998763 2222 22221 111 3222111 0001
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+.+|+|+-+- .. ...+....++++++|+++...
T Consensus 240 ~gg~Dvvid~~--g~----~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 240 YEQMDFIYEAT--GF----PKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp SCCEEEEEECS--CC----HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCEEEECC--CC----hHHHHHHHHHHhcCCEEEEEe
Confidence 23799998532 11 345777888999999988764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=89.75 E-value=0.58 Score=38.97 Aligned_cols=92 Identities=14% Similarity=0.038 Sum_probs=54.9
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHH-h--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-Cccc-ccC-
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYL-L--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQI-NAL- 136 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~-~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~-~~~- 136 (232)
++. +||-+|+|. |...+.+|+ . |+ +|+++|.++. .+.+++ .+.. .. ++... .... ...
T Consensus 170 ~g~--~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~v--i~~~~~~~~~~~~~~ 235 (344)
T 2h6e_A 170 AEP--VVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE----LGAD-----YV--SEMKDAESLINKLTD 235 (344)
T ss_dssp SSC--EEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH----HTCS-----EE--ECHHHHHHHHHHHHT
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH----hCCC-----EE--eccccchHHHHHhhc
Confidence 778 999999976 777777665 4 77 8999998873 333222 1211 11 11111 0000 001
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+|+|+-+-. . ...+....++++++|+++...
T Consensus 236 g~g~D~vid~~g--~----~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 236 GLGASIAIDLVG--T----EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp TCCEEEEEESSC--C----HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCccEEEECCC--C----hHHHHHHHHHhhcCCEEEEeC
Confidence 126999996432 1 346777889999999988753
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=1.3 Score=36.60 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=54.8
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
..+++ +||=+|+ |. |.....+++. |+ +|+++|.++. +..+ +..+.. . ..+........
T Consensus 146 ~~~g~--~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~----~~~ga~-----~--~~~~~~~~~~~~~~~ 211 (334)
T 3qwb_A 146 VKKGD--YVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIA----KEYGAE-----Y--LINASKEDILRQVLK 211 (334)
T ss_dssp CCTTC--EEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH----HHTTCS-----E--EEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH----HHcCCc-----E--EEeCCCchHHHHHHH
Confidence 44778 9999994 43 7777766665 88 9999998763 2222 222211 1 12222221100
Q ss_pred cC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 135 AL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 135 ~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.. ...+|+|+-+-.- ..+....++++++|+++..
T Consensus 212 ~~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 212 FTNGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp HTTTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEE
Confidence 01 2369999964321 3566778899999998885
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.87 Score=36.69 Aligned_cols=131 Identities=15% Similarity=0.051 Sum_probs=76.5
Q ss_pred CcEEEeCccccHHHHHHHHh--------CCCcEEEEcchhH-------------------------HHHHHHHH--HhcC
Q 026858 69 RRAIELGAGCGAAGMAFYLL--------GLADIVLTDISPV-------------------------MPALKHNL--KRNK 113 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~--------~~~~v~~~D~s~~-------------------------~~~~~~n~--~~~~ 113 (232)
..|+|+|+-.|..++.++.. ..+++++.|.-+- .....+.+ ..+.
T Consensus 71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~ 150 (257)
T 3tos_A 71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS 150 (257)
T ss_dssp SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence 37999999999988776542 1359999993110 00111111 1111
Q ss_pred ---CCCCCceEEEEeecCCCccc--c-cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHH
Q 026858 114 ---PVLNKSLKTSVLYWNNQDQI--N-ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR--SPEAHK 185 (232)
Q Consensus 114 ---~~~~~~i~~~~~d~~~~~~~--~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~ 185 (232)
.....++.+...+....... . ...++||+|..-.-.| ......++.+...|+|||.+++-+... -+...+
T Consensus 151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y--~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~ 228 (257)
T 3tos_A 151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY--EPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENI 228 (257)
T ss_dssp STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH--HHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHH
T ss_pred hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc--chHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHH
Confidence 12246688887766433211 1 1234699999854332 344567888889999999999876532 234445
Q ss_pred HHHHHHhc-CceEEEec
Q 026858 186 LFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 186 ~~~~~~~~-~f~~~~~~ 201 (232)
.+.+.+.+ +..+..++
T Consensus 229 A~~ef~~~~~~~i~~~p 245 (257)
T 3tos_A 229 AMRKVLGLDHAPLRLLP 245 (257)
T ss_dssp HHHHHTCTTSSCCEECT
T ss_pred HHHHHHhhCCCeEEEcc
Confidence 55555543 66666665
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.22 E-value=0.87 Score=36.46 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=29.3
Q ss_pred CCccEEEEcccCCCc--------------ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIE--------------ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~--------------~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
++||+|++.++.... ......+..+.++|+|+|.+++..
T Consensus 22 ~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 22 KSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp TCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 579999986655322 145677788899999999998874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=89.10 E-value=0.8 Score=38.48 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=56.3
Q ss_pred ccCCCCCcEEEeC-ccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cc-
Q 026858 63 DFHSTRRRAIELG-AGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---IN- 134 (232)
Q Consensus 63 ~~~~~~~~VLElG-cGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~- 134 (232)
..+++ +||=.| +|. |.....+++. |+ +|+++|.++. +..++ ..+.. . ..+...... ..
T Consensus 161 ~~~g~--~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~----~~Ga~-----~--~~~~~~~~~~~~~~~ 226 (362)
T 2c0c_A 161 LSEGK--KVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLK----SLGCD-----R--PINYKTEPVGTVLKQ 226 (362)
T ss_dssp CCTTC--EEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS-----E--EEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH----HcCCc-----E--EEecCChhHHHHHHH
Confidence 34677 999999 454 8877777765 88 8999998863 22222 12211 1 122222110 00
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+.+|+|+-+-. . ..+..+.++++++|++++..
T Consensus 227 ~~~~g~D~vid~~g--~-----~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 227 EYPEGVDVVYESVG--G-----AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp HCTTCEEEEEECSC--T-----HHHHHHHHHEEEEEEEEECC
T ss_pred hcCCCCCEEEECCC--H-----HHHHHHHHHHhcCCEEEEEe
Confidence 11246999996532 1 46778889999999988764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.98 E-value=0.29 Score=40.76 Aligned_cols=93 Identities=9% Similarity=-0.057 Sum_probs=54.2
Q ss_pred ccCCCCCcEEEeCccc--cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c
Q 026858 63 DFHSTRRRAIELGAGC--GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt--G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~ 134 (232)
..+++ +||=+|+|. |.....+++. |+ +|+++|.++. ++.+++ .+.. . .++....... .
T Consensus 142 ~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lga~-----~--~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 142 LQRND--VLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR----LGAA-----Y--VIDTSTAPLYETVME 207 (340)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS-----E--EEETTTSCHHHHHHH
T ss_pred cCCCC--EEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----CCCc-----E--EEeCCcccHHHHHHH
Confidence 45778 999999974 6677666654 88 9999998873 333332 1211 1 1222222110 0
Q ss_pred cC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 AL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. ...+|+|+-+-. ...+ ....++|+++|++++..
T Consensus 208 ~~~~~g~Dvvid~~g------~~~~-~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 208 LTNGIGADAAIDSIG------GPDG-NELAFSLRPNGHFLTIG 243 (340)
T ss_dssp HTTTSCEEEEEESSC------HHHH-HHHHHTEEEEEEEEECC
T ss_pred HhCCCCCcEEEECCC------ChhH-HHHHHHhcCCCEEEEEe
Confidence 11 136999986422 1222 33448999999998863
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=88.91 E-value=0.63 Score=39.82 Aligned_cols=41 Identities=24% Similarity=0.341 Sum_probs=29.6
Q ss_pred CCcEEEeCccccHHHHHHHHh--------CCCcEEEEcchhHHHHHHHH
Q 026858 68 RRRAIELGAGCGAAGMAFYLL--------GLADIVLTDISPVMPALKHN 108 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~--------~~~~v~~~D~s~~~~~~~~n 108 (232)
+.+|+|+|+|.|.+..-+.+. ..-+|+.+|.|+.+...+++
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~ 129 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT 129 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHH
Confidence 347999999999987555431 12289999999976655543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=2.5 Score=34.93 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=55.2
Q ss_pred cCCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c-
Q 026858 64 FHSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N- 134 (232)
Q Consensus 64 ~~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~- 134 (232)
.+++ +||-.|+ | .|.....+++. |+ +|+++|.++. ++.+++ ..+.. ...|..+.... .
T Consensus 154 ~~g~--~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~~-------~~~d~~~~~~~~~~~~~ 220 (345)
T 2j3h_A 154 KEGE--TVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGFD-------DAFNYKEESDLTAALKR 220 (345)
T ss_dssp CTTC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCCS-------EEEETTSCSCSHHHHHH
T ss_pred CCCC--EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCc-------eEEecCCHHHHHHHHHH
Confidence 4677 9999997 3 47766666654 87 8999998862 222221 11211 11233322111 0
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+.+|+|+-+.. . ..+....++++++|++++..
T Consensus 221 ~~~~~~d~vi~~~g------~-~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 221 CFPNGIDIYFENVG------G-KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HCTTCEEEEEESSC------H-HHHHHHHTTEEEEEEEEECC
T ss_pred HhCCCCcEEEECCC------H-HHHHHHHHHHhcCCEEEEEc
Confidence 01246999986532 1 36777888999999988753
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=88.82 E-value=0.5 Score=41.00 Aligned_cols=39 Identities=31% Similarity=0.540 Sum_probs=28.1
Q ss_pred CcEEEeCccccHHHHHHHHh----C--CCcEEEEcchhHHHHHHH
Q 026858 69 RRAIELGAGCGAAGMAFYLL----G--LADIVLTDISPVMPALKH 107 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~----~--~~~v~~~D~s~~~~~~~~ 107 (232)
.+|+|+|+|+|.+..-+.+. + ..+++.+++|+.+...++
T Consensus 139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~ 183 (432)
T 4f3n_A 139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQR 183 (432)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHH
T ss_pred CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHH
Confidence 49999999999988555432 2 237999999996544433
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=88.70 E-value=1.1 Score=37.19 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=54.8
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc-c-c-cc
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD-Q-I-NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~-~-~-~~ 135 (232)
..+++ +||=.|+ |. |.....+++. |+ +|++++.++. .+.+++ .+.. ... +..... . . ..
T Consensus 157 ~~~g~--~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~-----~v~--~~~~~~~~~v~~~ 222 (342)
T 4eye_A 157 LRAGE--TVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS----VGAD-----IVL--PLEEGWAKAVREA 222 (342)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS-----EEE--ESSTTHHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc-----EEe--cCchhHHHHHHHH
Confidence 44778 9999998 43 7777777665 88 9999998763 333322 1211 111 222110 0 0 01
Q ss_pred CCC-CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 LKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 ~~~-~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+ .+|+|+-+-.- ..+....++++++|++++..
T Consensus 223 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 223 TGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp TTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred hCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 122 69999964321 24667788999999988763
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=88.65 E-value=0.76 Score=38.30 Aligned_cols=91 Identities=19% Similarity=0.126 Sum_probs=54.3
Q ss_pred CCCCCcEEEe-Cccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc--cc-ccCC
Q 026858 65 HSTRRRAIEL-GAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD--QI-NALK 137 (232)
Q Consensus 65 ~~~~~~VLEl-GcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~--~~-~~~~ 137 (232)
++. +||=+ |+|. |..+..+++. |+ +|+++|.++. ++.+++ .+.. . .++..... .. ....
T Consensus 150 ~g~--~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~--vi~~~~~~~~~~~~~~~ 215 (346)
T 3fbg_A 150 EGK--TLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK----MGAD-----I--VLNHKESLLNQFKTQGI 215 (346)
T ss_dssp TTC--EEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH----HTCS-----E--EECTTSCHHHHHHHHTC
T ss_pred CCC--EEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCc-----E--EEECCccHHHHHHHhCC
Confidence 677 89998 5665 7777777765 88 9999999763 333322 1211 1 11111110 00 1112
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+.+|+|+-+. .-...+..+.++|+++|+++..
T Consensus 216 ~g~Dvv~d~~------g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 216 ELVDYVFCTF------NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CCEEEEEESS------CHHHHHHHHHHHEEEEEEEEES
T ss_pred CCccEEEECC------CchHHHHHHHHHhccCCEEEEE
Confidence 3699998642 2345677888999999998764
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.65 E-value=0.13 Score=43.82 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=55.0
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecC---CCc---cc-c
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWN---NQD---QI-N 134 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~---~~~---~~-~ 134 (232)
++. +||=+|+|. |..++.+|+. |+.+|+++|.++. ++.++ ..+.. .. ++.. ... .. .
T Consensus 195 ~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~----~lGa~-----~v--i~~~~~~~~~~~~~v~~ 261 (380)
T 1vj0_A 195 AGK--TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGAD-----LT--LNRRETSVEERRKAIMD 261 (380)
T ss_dssp BTC--EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCS-----EE--EETTTSCHHHHHHHHHH
T ss_pred CCC--EEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH----HcCCc-----EE--EeccccCcchHHHHHHH
Confidence 677 999999876 7777777765 7349999998873 22222 22211 11 1222 100 00 0
Q ss_pred cCCC-CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKP-PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~-~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+ .+|+|+-+-. . ...+....++++++|+++...
T Consensus 262 ~~~g~g~Dvvid~~g--~----~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 262 ITHGRGADFILEATG--D----SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp HTTTSCEEEEEECSS--C----TTHHHHHHHHEEEEEEEEECC
T ss_pred HhCCCCCcEEEECCC--C----HHHHHHHHHHHhcCCEEEEEe
Confidence 1122 6999995432 1 135667788999999988764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=88.63 E-value=1.3 Score=40.66 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=36.3
Q ss_pred CCCccEEEEcccCC---CcccH-HHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHH-HhcCceEEEec
Q 026858 137 KPPFDLVIAADVVY---IEESA-AQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEM-CAEVFLIEKVP 201 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~---~~~~~-~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~-~~~~f~~~~~~ 201 (232)
...+|.++. |.+- +++.+ ..++..+.++++|||++.-.. -. ....+. .+.+|.+...+
T Consensus 169 ~~~~da~fl-D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~--~~----~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 169 NNQVDAWFL-DGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT--AA----GFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp TTCEEEEEE-CSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC--CC----HHHHHHHHHTTCEEEEEE
T ss_pred CCceeEEEE-CCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc--Cc----HHHHHHHHhCCeEEEecc
Confidence 357999997 3332 22222 567899999999999866322 11 223333 34689888765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=1.7 Score=35.72 Aligned_cols=93 Identities=15% Similarity=0.023 Sum_probs=55.5
Q ss_pred ccCCCCCcEEEeC-ccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c
Q 026858 63 DFHSTRRRAIELG-AGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElG-cGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~ 134 (232)
..+++ +||=.| +|. |.....+++. |+ +|+++|.++. ++.+++ .+.. . .++....... .
T Consensus 138 ~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~-----~--~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 138 VKPGE--IILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKA----LGAW-----E--TIDYSHEDVAKRVLE 203 (325)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS-----E--EEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC-----E--EEeCCCccHHHHHHH
Confidence 34778 999999 444 7777776665 88 9999998873 333221 1211 1 1222222110 0
Q ss_pred cCC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
... ..+|+|+-+-.- ..+....++++++|++++..
T Consensus 204 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 204 LTDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp HTTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred HhCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence 111 369999864321 35667788999999998864
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=88.50 E-value=3.5 Score=32.62 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=52.4
Q ss_pred cccCCCCCcEEEeCccc--c--H-HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-
Q 026858 62 LDFHSTRRRAIELGAGC--G--A-AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN- 134 (232)
Q Consensus 62 ~~~~~~~~~VLElGcGt--G--~-~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~- 134 (232)
..+.++ ++|=-|+++ | . ++..+++.|+ +|+.+|.++ ..+...+.+.... ..++.+...|+.+.+...
T Consensus 2 ~~l~gK--~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 2 LNLENK--TYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLN---QPEAHLYQIDVQSDEEVIN 75 (256)
T ss_dssp CCCTTC--EEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGT---CSSCEEEECCTTCHHHHHH
T ss_pred cCCCCC--EEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC---CCcEEEEEccCCCHHHHHH
Confidence 356788 899888532 4 3 4566777798 999999987 3555554443322 224577788887765321
Q ss_pred ------cCCCCccEEEEcccC
Q 026858 135 ------ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ------~~~~~fD~Ii~~~~~ 149 (232)
..-++.|+++.+..+
T Consensus 76 ~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 76 GFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp HHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHhCCCCEEEecccc
Confidence 123679999976543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=88.29 E-value=1.1 Score=36.89 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=53.4
Q ss_pred cEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+||=.|+ |. |..++.+|+. |+ +|+++|.++. .+.+++ .+.. ..+..-+..... ....+.+|+|+-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~----~vi~~~~~~~~~--~~~~~~~d~v~d 217 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS----LGAN----RILSRDEFAESR--PLEKQLWAGAID 217 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH----HTCS----EEEEGGGSSCCC--SSCCCCEEEEEE
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC----EEEecCCHHHHH--hhcCCCccEEEE
Confidence 5999997 44 8888888766 88 9999998773 333332 1211 111111111100 111246998875
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+ .. ...+....++++++|+++...
T Consensus 218 ~--~g-----~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 218 T--VG-----DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp S--SC-----HHHHHHHHHTEEEEEEEEECC
T ss_pred C--CC-----cHHHHHHHHHHhcCCEEEEEe
Confidence 3 22 137788889999999998863
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=88.07 E-value=0.43 Score=39.08 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=29.7
Q ss_pred CCCccEEEEcccCCCcc--------------------cHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEE--------------------SAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~--------------------~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+++||+|+++++..... .+..+++.+.++|+|||.+++..
T Consensus 38 ~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 38 EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 35899999987764221 13456778899999999998864
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.04 E-value=3 Score=33.16 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=54.7
Q ss_pred CCcccccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc
Q 026858 58 YSHLLDFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI 133 (232)
Q Consensus 58 ~~~~~~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~ 133 (232)
+..+....++ ++|=-|++.|+ ++..+++.|+ +|+++|.++. +......+... ...++.+...|+.+....
T Consensus 12 ~~~~~~l~~k--~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dv~~~~~v 85 (266)
T 4egf_A 12 YAGVLRLDGK--RALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQ---FGTDVHTVAIDLAEPDAP 85 (266)
T ss_dssp BCGGGCCTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTSTTHH
T ss_pred cccccCCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHH
Confidence 3445566788 89988887654 3355566688 8999998863 44444333321 123468888888876542
Q ss_pred cc-------CCCCccEEEEcccCC
Q 026858 134 NA-------LKPPFDLVIAADVVY 150 (232)
Q Consensus 134 ~~-------~~~~fD~Ii~~~~~~ 150 (232)
.. ..++.|++|.+..+.
T Consensus 86 ~~~~~~~~~~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 86 AELARRAAEAFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHHHHHHHHHHTSCSEEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcC
Confidence 11 124789999876553
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=1.9 Score=35.75 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----cCC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----ALK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----~~~ 137 (232)
++. +||-+|+|. |...+.+|+. |+.+|+++|.++. ++.++. + .. . .++........ ...
T Consensus 164 ~g~--~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~--------l-a~-~--v~~~~~~~~~~~~~~~~~ 229 (343)
T 2dq4_A 164 SGK--SVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP--------Y-AD-R--LVNPLEEDLLEVVRRVTG 229 (343)
T ss_dssp TTS--CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT--------T-CS-E--EECTTTSCHHHHHHHHHS
T ss_pred CCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--------h-HH-h--ccCcCccCHHHHHHHhcC
Confidence 778 999999965 7777777765 7658999998762 111111 1 10 1 12222211000 012
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|+|+-+-. . ...++...++++++|+++...
T Consensus 230 ~g~D~vid~~g--~----~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 230 SGVEVLLEFSG--N----EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp SCEEEEEECSC--C----HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCC--C----HHHHHHHHHHHhcCCEEEEEe
Confidence 36999986432 1 346777888999999988763
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.91 E-value=5.3 Score=28.10 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=49.0
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEE
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~ 145 (232)
+|+=+|||. |. ++..++..|. +|+++|.++. +.... ... +.+...|..+....... ...+|.|+.
T Consensus 8 ~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~----~~~------~~~~~gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 8 EYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLE----DEG------FDAVIADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHH----HTT------CEEEECCTTCHHHHHHSCCTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH----HCC------CcEEECCCCCHHHHHhCCcccCCEEEE
Confidence 799999865 33 3334444587 9999999873 22222 111 24555665554332221 246899987
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+.. .......+....+.+. ...++...
T Consensus 77 ~~~---~~~~n~~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 77 TGS---DDEFNLKILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp CCS---CHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred ecC---CHHHHHHHHHHHHHhC-CceEEEEE
Confidence 543 1222333334444455 55555443
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=87.90 E-value=5.7 Score=31.27 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=52.9
Q ss_pred ccCCCCCcEEEeCc-cccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGA-GCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGc-GtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
...++ ++|=.|+ |.|+ ++..+++.|+ +|+++|.++. +......+... ...++.+...|+.+......
T Consensus 19 ~l~~k--~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 19 LLKGK--VVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADL---GLGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp TTTTC--EEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTT---CSSCEEEEECCTTCHHHHHHHH
T ss_pred CCCCC--EEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhc---CCCceEEEEeCCCCHHHHHHHH
Confidence 45677 8999987 5655 4455666788 8999998863 44444443322 12457888888877653211
Q ss_pred -----CCCCccEEEEcccCC
Q 026858 136 -----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~~ 150 (232)
..++.|++|.+..+.
T Consensus 93 ~~~~~~~g~id~li~~Ag~~ 112 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNAGLG 112 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHhCCCcEEEECCCcC
Confidence 124789999876653
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.58 E-value=1 Score=37.81 Aligned_cols=74 Identities=9% Similarity=0.000 Sum_probs=48.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---cC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---AL 136 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~~ 136 (232)
..++. .++|..||.|.-+..++.. +.++|+++|.++. +..+ +.+ ...++.+...++.+....- +.
T Consensus 55 i~pgg--iyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A-~rL------~~~Rv~lv~~nF~~l~~~L~~~g~ 125 (347)
T 3tka_A 55 IRPDG--IYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVA-KTI------DDPRFSIIHGPFSALGEYVAERDL 125 (347)
T ss_dssp CCTTC--EEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH-TTC------CCTTEEEEESCGGGHHHHHHHTTC
T ss_pred CCCCC--EEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHH-Hhh------cCCcEEEEeCCHHHHHHHHHhcCC
Confidence 44777 9999999999999888765 3459999999993 4433 211 1245677766655543211 11
Q ss_pred CCCccEEEE
Q 026858 137 KPPFDLVIA 145 (232)
Q Consensus 137 ~~~fD~Ii~ 145 (232)
.+++|.|+.
T Consensus 126 ~~~vDgILf 134 (347)
T 3tka_A 126 IGKIDGILL 134 (347)
T ss_dssp TTCEEEEEE
T ss_pred CCcccEEEE
Confidence 235777776
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.51 E-value=1.2 Score=37.24 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=54.6
Q ss_pred ccCCCCCcEEEeC-ccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c
Q 026858 63 DFHSTRRRAIELG-AGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElG-cGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~ 134 (232)
..+++ +||=.| +|. |.....+++. |+ +|+++|.++. +..+++ .+.. . .++....... .
T Consensus 165 ~~~g~--~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~-----~--~~~~~~~~~~~~~~~ 230 (353)
T 4dup_A 165 LTEGE--SVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER----LGAK-----R--GINYRSEDFAAVIKA 230 (353)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS-----E--EEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCC-----E--EEeCCchHHHHHHHH
Confidence 44778 999995 343 7777666665 88 8999998873 332222 2211 1 1222222110 0
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+.+|+|+-+..- ..+....+.++++|++++..
T Consensus 231 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 231 ETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp HHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred HhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEE
Confidence 012469999964321 24666788999999988753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=87.48 E-value=2.1 Score=35.41 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=52.7
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHH-hCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cccCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYL-LGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INALK 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~-~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~ 137 (232)
..++. +||=+|+|+ |.....+++ .+..+|+++|.++. .....+..+.. .. ++..+... .....
T Consensus 161 ~~~g~--~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~---r~~~~~~~Ga~----~~---i~~~~~~~~~~v~~~t 228 (348)
T 4eez_A 161 VKPGD--WQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQD---KLNLAKKIGAD----VT---INSGDVNPVDEIKKIT 228 (348)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHH---HHHHHHHTTCS----EE---EEC-CCCHHHHHHHHT
T ss_pred CCCCC--EEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHH---HhhhhhhcCCe----EE---EeCCCCCHHHHhhhhc
Confidence 44778 899999987 445555544 44449999999873 11222222211 11 12222111 01111
Q ss_pred --CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 138 --PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 138 --~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
..+|.++... .-...+....++++++|++++.
T Consensus 229 ~g~g~d~~~~~~------~~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 229 GGLGVQSAIVCA------VARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp TSSCEEEEEECC------SCHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCCceEEEEec------cCcchhheeheeecCCceEEEE
Confidence 2466666432 1245677788899999998875
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=87.30 E-value=1.2 Score=37.01 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=55.1
Q ss_pred ccCCCCCcEEEeCccc--cHHHHHHH-Hh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cc
Q 026858 63 DFHSTRRRAIELGAGC--GAAGMAFY-LL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---IN 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt--G~~s~~la-~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~ 134 (232)
..+++ +||-.|+|. |.....++ .. |+ +|+++|.++. .+.+++ .+.. . ..+..+... ..
T Consensus 168 ~~~g~--~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~----~g~~-----~--~~~~~~~~~~~~~~ 233 (347)
T 1jvb_A 168 LDPTK--TLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKR----AGAD-----Y--VINASMQDPLAEIR 233 (347)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHH----HTCS-----E--EEETTTSCHHHHHH
T ss_pred CCCCC--EEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHH----hCCC-----E--EecCCCccHHHHHH
Confidence 34777 999999984 55555554 45 77 8999998873 333221 1211 1 123322211 11
Q ss_pred c-CC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 A-LK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~-~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. .. +.+|+|+-+.. ....+....++++++|++++..
T Consensus 234 ~~~~~~~~d~vi~~~g------~~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 234 RITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp HHTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECC
T ss_pred HHhcCCCceEEEECCC------CHHHHHHHHHHHhcCCEEEEEC
Confidence 1 11 47999986432 1345677778899999988754
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.02 E-value=3.1 Score=33.16 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=62.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcch------------h-HHHHHHHHHHhcCCCCCCceEEEEee
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDIS------------P-VMPALKHNLKRNKPVLNKSLKTSVLY 126 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s------------~-~~~~~~~n~~~~~~~~~~~i~~~~~d 126 (232)
...++ +||=-|++.|+ ++..+++.|+ +|+++|.+ . .+.......... ..++.+...|
T Consensus 7 ~l~gk--~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D 79 (287)
T 3pxx_A 7 RVQDK--VVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT----GRKAYTAEVD 79 (287)
T ss_dssp TTTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT----TSCEEEEECC
T ss_pred ccCCC--EEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhc----CCceEEEEcc
Confidence 45678 89988887664 3355566688 89999875 2 233333333322 2356788888
Q ss_pred cCCCccccc-------CCCCccEEEEcccCCC------cccHHH-----------HHHHHHHhhCCCcEEEEEE
Q 026858 127 WNNQDQINA-------LKPPFDLVIAADVVYI------EESAAQ-----------LVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 127 ~~~~~~~~~-------~~~~fD~Ii~~~~~~~------~~~~~~-----------~l~~l~~~l~pgG~l~i~~ 176 (232)
+.+...... ..++.|++|.+..+.. .+.+.. +++.+...++.+|.++...
T Consensus 80 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 80 VRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 877653211 1247899998765532 122222 2233444456778877763
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.70 E-value=6.2 Score=31.33 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=47.9
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ +||=.|++.|+ ++..+++.|+ +|++++.++. +......+.... ....+.+...|+.+......
T Consensus 29 ~l~~k--~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~ 103 (279)
T 1xg5_A 29 RWRDR--LALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFS 103 (279)
T ss_dssp GGTTC--EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHH
T ss_pred ccCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcC--CCceEEEEEecCCCHHHHHHHHH
Confidence 34667 88888875543 2234445588 8999998763 444333333322 12346677778776543211
Q ss_pred ----CCCCccEEEEcccC
Q 026858 136 ----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~ 149 (232)
..+.+|+||.+...
T Consensus 104 ~~~~~~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 104 AIRSQHSGVDICINNAGL 121 (279)
T ss_dssp HHHHHHCCCSEEEECCCC
T ss_pred HHHHhCCCCCEEEECCCC
Confidence 12468999986654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=5.7 Score=32.01 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=48.8
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH--HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV--MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~--~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+.+|.+.. ........... ..++.+...|+.+......
T Consensus 44 ~l~gk--~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~ 116 (291)
T 3ijr_A 44 KLKGK--NVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKE----GVKCVLLPGDLSDEQHCKDIV 116 (291)
T ss_dssp TTTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTT----TCCEEEEESCTTSHHHHHHHH
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHH
Confidence 45677 89999887664 3345556688 8999998752 22232222222 2456778888877543211
Q ss_pred -----CCCCccEEEEcccC
Q 026858 136 -----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~ 149 (232)
..+..|++|.+...
T Consensus 117 ~~~~~~~g~iD~lvnnAg~ 135 (291)
T 3ijr_A 117 QETVRQLGSLNILVNNVAQ 135 (291)
T ss_dssp HHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 12478999976544
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=86.01 E-value=4.1 Score=32.43 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=52.0
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--CC
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--LK 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--~~ 137 (232)
...++ .+|==|++.|+ .+..+++.|+ +|+.+|.+.. +.....+.... .+......|+.+...... ..
T Consensus 6 ~L~GK--valVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~-~~~~~~~~~~g----~~~~~~~~Dv~d~~~v~~~~~~ 77 (247)
T 4hp8_A 6 SLEGR--KALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP-DETLDIIAKDG----GNASALLIDFADPLAAKDSFTD 77 (247)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC-HHHHHHHHHTT----CCEEEEECCTTSTTTTTTSSTT
T ss_pred CCCCC--EEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH-HHHHHHHHHhC----CcEEEEEccCCCHHHHHHHHHh
Confidence 56888 88888888876 4466677798 9999998752 12222233322 345777888877653221 23
Q ss_pred CCccEEEEcccCC
Q 026858 138 PPFDLVIAADVVY 150 (232)
Q Consensus 138 ~~fD~Ii~~~~~~ 150 (232)
++.|++|-+..+.
T Consensus 78 g~iDiLVNNAGi~ 90 (247)
T 4hp8_A 78 AGFDILVNNAGII 90 (247)
T ss_dssp TCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 5799999766553
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.98 E-value=2.2 Score=35.03 Aligned_cols=93 Identities=11% Similarity=0.033 Sum_probs=54.6
Q ss_pred ccCCCCCcEEEeCc--cccHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c
Q 026858 63 DFHSTRRRAIELGA--GCGAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc--GtG~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~ 134 (232)
..+++ +||-.|+ |.|.....+++ .|+ +|+++|.++. ...++. .+.. . ..+..+.... .
T Consensus 138 ~~~g~--~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~----~g~~-----~--~~~~~~~~~~~~~~~ 203 (327)
T 1qor_A 138 IKPDE--QFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW-----Q--VINYREEDLVERLKE 203 (327)
T ss_dssp CCTTC--EEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS-----E--EEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC-----E--EEECCCccHHHHHHH
Confidence 34677 9999994 33666655554 488 9999998863 333222 1211 1 1233322210 0
Q ss_pred cC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 AL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. ...+|+|+-+.. ...++.+.++++++|++++..
T Consensus 204 ~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 204 ITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp HTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred HhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence 01 236999996543 235677788999999988753
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=85.96 E-value=2.3 Score=40.91 Aligned_cols=33 Identities=18% Similarity=0.431 Sum_probs=29.3
Q ss_pred CCcEEEeCccccHHHHHHHHhCC-CcEEEEcchh
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGL-ADIVLTDISP 100 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~-~~v~~~D~s~ 100 (232)
+++++||.||.|.+++.+.+.|. ..+.++|+++
T Consensus 540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~ 573 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWD 573 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSH
T ss_pred CCeEEEeccCccHHHHHHHHCCCCceEEEEECCH
Confidence 45999999999999999988886 5688999999
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=85.79 E-value=7.9 Score=28.56 Aligned_cols=93 Identities=13% Similarity=-0.016 Sum_probs=48.6
Q ss_pred cEEEeCccc-cH-HHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC--CCCccEE
Q 026858 70 RAIELGAGC-GA-AGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL--KPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~--~~~fD~I 143 (232)
+|+=+|||. |. ++..+... |. +|+++|.++. +.. ....+ +.....|..+....... -..+|+|
T Consensus 41 ~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~----~~~~g------~~~~~gd~~~~~~l~~~~~~~~ad~v 109 (183)
T 3c85_A 41 QVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQ----HRSEG------RNVISGDATDPDFWERILDTGHVKLV 109 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHH----HHHTT------CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred cEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHH----HHHCC------CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence 799898876 54 33445556 77 8999999873 222 22222 12333444332221111 2468999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+.+-. ...... .+-...+.+.|++.++...
T Consensus 110 i~~~~--~~~~~~-~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 110 LLAMP--HHQGNQ-TALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp EECCS--SHHHHH-HHHHHHHHTTCCSEEEEEE
T ss_pred EEeCC--ChHHHH-HHHHHHHHHCCCCEEEEEE
Confidence 97432 112222 2223444556677776654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=85.79 E-value=6.5 Score=32.18 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=52.4
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ +||=.|++.|+ ++..++..|+ +|++++.++. +......+.... ....+.+...|+.+......
T Consensus 5 ~l~~k--~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~~~~v~~~~~ 79 (319)
T 3ioy_A 5 DFAGR--TAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEG--SGPEVMGVQLDVASREGFKMAAD 79 (319)
T ss_dssp CCTTC--EEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCCeEEEEECCCCCHHHHHHHHH
Confidence 34667 89999987765 3345556688 8999998873 444444443332 11256788888877653211
Q ss_pred ----CCCCccEEEEcccCC
Q 026858 136 ----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~~ 150 (232)
..+..|++|.+..+.
T Consensus 80 ~~~~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 80 EVEARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHHHHTCCEEEEEECCCCC
T ss_pred HHHHhCCCCCEEEECCCcC
Confidence 125789999876653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.77 E-value=2.2 Score=35.54 Aligned_cols=93 Identities=18% Similarity=0.135 Sum_probs=54.6
Q ss_pred ccCCCCCcEEEeCc--cccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGA--GCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc--GtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
..+++ +||-.|+ |.|.....+++. |+ +|+++|.++. ...+ +..+.. ..++..+.....
T Consensus 168 ~~~g~--~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~----~~~ga~-------~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 168 VKAGE--SVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV----LQNGAH-------EVFNHREVNYIDKIKK 233 (351)
T ss_dssp CCTTC--EEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH----HHTTCS-------EEEETTSTTHHHHHHH
T ss_pred CCCcC--EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHH----HHcCCC-------EEEeCCCchHHHHHHH
Confidence 34677 9999997 336666666554 87 8999998873 2222 122211 112333221100
Q ss_pred c-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 A-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. ....+|+|+-+.. ...+....++++++|++++..
T Consensus 234 ~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence 0 1236999986532 135667788999999988753
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.58 E-value=5.2 Score=31.91 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=63.3
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh--HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP--VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~--~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+.+|... ........+... ..++.+...|..+......
T Consensus 28 ~l~gk--~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~ 100 (271)
T 3v2g_A 28 SLAGK--TAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQA----GGRAVAIRADNRDAEAIEQAI 100 (271)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHH
Confidence 34677 89999987765 3455566688 898886653 233333333332 2346777888877543211
Q ss_pred -----CCCCccEEEEcccCCCcc--------cH-----------HHHHHHHHHhhCCCcEEEEEE
Q 026858 136 -----LKPPFDLVIAADVVYIEE--------SA-----------AQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~~~~~--------~~-----------~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..++.|++|.+..+.... ++ -.+++.+.+.++.+|.++...
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 101 RETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred HHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 124789999876553211 11 223445556667788887763
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.52 E-value=2.7 Score=34.49 Aligned_cols=90 Identities=11% Similarity=0.031 Sum_probs=50.2
Q ss_pred cEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEE
Q 026858 70 RAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii 144 (232)
+||=+|+ |. |...+.+++. |+ ++++++.++. ++.+++ .+.. ..+..-+.. ...... ..+.+|+|+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~----~~i~~~~~~-~~~~~~~~~~~~d~vi 221 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAK----EVLAREDVM-AERIRPLDKQRWAAAV 221 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCS----EEEECC----------CCSCCEEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCc----EEEecCCcH-HHHHHHhcCCcccEEE
Confidence 7999997 44 7777777765 87 8999998763 333322 2211 011111110 000011 123699998
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
-+-. . . .+....++++++|++++..
T Consensus 222 d~~g--~-~----~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 222 DPVG--G-R----TLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp ECST--T-T----THHHHHHTEEEEEEEEECS
T ss_pred ECCc--H-H----HHHHHHHhhccCCEEEEEe
Confidence 5432 1 1 3566778899999988763
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=85.44 E-value=6.5 Score=27.79 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=51.0
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccC-CCCccEEEE
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINAL-KPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~fD~Ii~ 145 (232)
+|+=+|||. |. ++..+...|. .|+++|.++. +...+ ..+ +.....|..+...+... -..+|.|++
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~----~~g------~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELR----ERG------VRAVLGNAANEEIMQLAHLECAKWLIL 77 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHH----HTT------CEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHH----HcC------CCEEECCCCCHHHHHhcCcccCCEEEE
Confidence 799999876 44 3344445587 9999999983 22222 221 24455555444322211 236899987
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.-. . ......+-...+.+.|+..++...
T Consensus 78 ~~~--~-~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 78 TIP--N-GYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp CCS--C-HHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred ECC--C-hHHHHHHHHHHHHHCCCCeEEEEE
Confidence 532 1 112222344556677887766544
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.39 E-value=3.3 Score=34.22 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=55.7
Q ss_pred ccCCCCCcEEEeCc--cccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cc-
Q 026858 63 DFHSTRRRAIELGA--GCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---IN- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc--GtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~- 134 (232)
..+++ +||-.|+ |.|.....+++. |+ +|+++|.++. ++.++. .+.. . ..+..+... ..
T Consensus 164 ~~~g~--~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~ga~-----~--~~d~~~~~~~~~~~~ 229 (343)
T 2eih_A 164 VRPGD--DVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKA----LGAD-----E--TVNYTHPDWPKEVRR 229 (343)
T ss_dssp CCTTC--EEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS-----E--EEETTSTTHHHHHHH
T ss_pred CCCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC-----E--EEcCCcccHHHHHHH
Confidence 34677 9999998 347777666654 88 9999998773 333321 1211 1 123332211 00
Q ss_pred cC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 AL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. ...+|+|+-+.. .. .+..+.++++++|+++...
T Consensus 230 ~~~~~~~d~vi~~~g---~~----~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 230 LTGGKGADKVVDHTG---AL----YFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp HTTTTCEEEEEESSC---SS----SHHHHHHHEEEEEEEEESS
T ss_pred HhCCCCceEEEECCC---HH----HHHHHHHhhccCCEEEEEe
Confidence 11 136999996543 12 4566778899999988753
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=85.34 E-value=3 Score=34.65 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=55.0
Q ss_pred cCC--CCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---c-
Q 026858 64 FHS--TRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---I- 133 (232)
Q Consensus 64 ~~~--~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~- 133 (232)
.++ + +||=.|+ | .|.....+++. |+.+|+++|.++. ...+++ ..+.. ...+..+... .
T Consensus 157 ~~g~~~--~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~---~~g~~-------~~~d~~~~~~~~~~~ 224 (357)
T 2zb4_A 157 TAGSNK--TMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTS---ELGFD-------AAINYKKDNVAEQLR 224 (357)
T ss_dssp CTTSCC--EEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---TSCCS-------EEEETTTSCHHHHHH
T ss_pred CCCCcc--EEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH---HcCCc-------eEEecCchHHHHHHH
Confidence 466 7 9999998 3 36666555554 7658999998762 222221 11211 1223333211 0
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
....+.+|+++-+.. ...+....++++++|++++..
T Consensus 225 ~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 225 ESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred HhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence 011226999986543 256778888999999988753
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=85.08 E-value=0.6 Score=38.08 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=52.7
Q ss_pred CCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCC-CcccccCCCC
Q 026858 65 HSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNN-QDQINALKPP 139 (232)
Q Consensus 65 ~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~~~ 139 (232)
+++ +||-+|+ | .|.....+++. |+ +|+++|.++. .+.+++ .+.. . ..+... ....... +.
T Consensus 125 ~g~--~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~-----~--~~~~~~~~~~~~~~-~~ 189 (302)
T 1iz0_A 125 PGE--KVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE-----E--AATYAEVPERAKAW-GG 189 (302)
T ss_dssp TTC--EEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS-----E--EEEGGGHHHHHHHT-TS
T ss_pred CCC--EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC-----E--EEECCcchhHHHHh-cC
Confidence 677 9999998 4 37777777655 87 9999998763 333221 1211 1 122221 1100111 46
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|+|+- -. . ..+....++++++|+++...
T Consensus 190 ~d~vid-~g--~-----~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 190 LDLVLE-VR--G-----KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp EEEEEE-CS--C-----TTHHHHHTTEEEEEEEEEC-
T ss_pred ceEEEE-CC--H-----HHHHHHHHhhccCCEEEEEe
Confidence 999986 32 1 24567788899999988753
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=84.96 E-value=3.9 Score=33.20 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=52.0
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ +||=.|++.|+ ++..+++.|+ +|+++|.++. +......+.... .++.+...|+.+......
T Consensus 28 ~l~gk--~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~ 100 (301)
T 3tjr_A 28 GFDGR--AAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG----FDAHGVVCDVRHLDEMVRLAD 100 (301)
T ss_dssp CSTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CceEEEEccCCCHHHHHHHHH
Confidence 45778 89999887664 3345556688 8999998873 444444443322 346788888877553211
Q ss_pred ----CCCCccEEEEcccCC
Q 026858 136 ----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~~ 150 (232)
..+..|++|.+..+.
T Consensus 101 ~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 101 EAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHSSCSEEEECCCCC
T ss_pred HHHHhCCCCCEEEECCCcC
Confidence 124789999876653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=84.87 E-value=1.2 Score=36.93 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=31.4
Q ss_pred CCCccEEEEcccCCCc-----------ccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 137 KPPFDLVIAADVVYIE-----------ESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~-----------~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
.+++|+|++.++.... ......+..+.++|+|+|.+++....+
T Consensus 56 ~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 56 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 3579999986665321 135677788899999999999876544
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=84.42 E-value=1.4 Score=34.99 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=48.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh----HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP----VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~----~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~ 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+.++.+. .+......+... ..++.+...|+.+......
T Consensus 8 ~l~~k--~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~ 80 (262)
T 3ksu_A 8 DLKNK--VIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQ----GAKVALYQSDLSNEEEVAK 80 (262)
T ss_dssp CCTTC--EEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTT----TCEEEEEECCCCSHHHHHH
T ss_pred CCCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHH
Confidence 55778 89988887664 3344455588 898886532 233333333322 2456788888877553211
Q ss_pred -------CCCCccEEEEcccCC
Q 026858 136 -------LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 -------~~~~fD~Ii~~~~~~ 150 (232)
..++.|++|.+..+.
T Consensus 81 ~~~~~~~~~g~iD~lvnnAg~~ 102 (262)
T 3ksu_A 81 LFDFAEKEFGKVDIAINTVGKV 102 (262)
T ss_dssp HHHHHHHHHCSEEEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 125789999876553
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=84.27 E-value=5.2 Score=31.98 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=52.3
Q ss_pred cccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 62 LDFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 62 ~~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
....++ ++|=.|++.|+ ++..+++.|+ +|+++|.++ ..+.....+.... .++.+...|+.+......
T Consensus 28 ~~l~gk--~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 28 FDLSGK--RALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVG----GKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp GCCTTC--EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHH
T ss_pred cCCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCHHHHHHHH
Confidence 456778 89988887655 3355566688 899999876 3444444443322 245777888877653211
Q ss_pred -----CCCCccEEEEcccCC
Q 026858 136 -----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~~ 150 (232)
..++.|++|.+..+.
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGIV 120 (276)
T ss_dssp HHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 124799999876553
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=2.2 Score=34.97 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=29.1
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+.... +||=+|||. |. ++..|++.|.++++.+|.+.
T Consensus 33 kL~~~--~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 33 KIRTF--AVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GGGGC--EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCC--eEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 44567 999999996 66 55778888999999999775
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=8.2 Score=30.30 Aligned_cols=82 Identities=6% Similarity=-0.023 Sum_probs=49.7
Q ss_pred ccCCCCCcEEEeCcc--ccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-
Q 026858 63 DFHSTRRRAIELGAG--CGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcG--tG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~- 135 (232)
...++ ++|=.|++ .|+ ++..+++.|+ +|++++.++. ............ ..++.+...|+.+......
T Consensus 4 ~l~~k--~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~ 77 (266)
T 3oig_A 4 SLEGR--NIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLD---RNDSIILPCDVTNDAEIETC 77 (266)
T ss_dssp CCTTC--EEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSS---SCCCEEEECCCSSSHHHHHH
T ss_pred ccCCC--EEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcC---CCCceEEeCCCCCHHHHHHH
Confidence 34667 89989876 444 4456666788 8999987763 223322222221 1246888888887653211
Q ss_pred ------CCCCccEEEEcccCC
Q 026858 136 ------LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ------~~~~fD~Ii~~~~~~ 150 (232)
..+..|+++.+..+.
T Consensus 78 ~~~~~~~~g~id~li~~Ag~~ 98 (266)
T 3oig_A 78 FASIKEQVGVIHGIAHCIAFA 98 (266)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHhCCeeEEEEccccc
Confidence 124789999766543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.02 E-value=7.6 Score=30.43 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=51.6
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----- 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----- 134 (232)
..++ ++|=.|++.|+ ++..+++.|+ +|+++|.++ .+......+.... .++.+...|+.+.....
T Consensus 5 ~~~k--~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~ 77 (252)
T 3h7a_A 5 PRNA--TVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG----GRIVARSLDARNEDEVTAFLNA 77 (252)
T ss_dssp CCSC--EEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC----CeEEEEECcCCCHHHHHHHHHH
Confidence 3567 88888887765 3355566688 899999886 3455544444332 35678888887765321
Q ss_pred --cCCCCccEEEEcccCC
Q 026858 135 --ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~~ 150 (232)
.. ++.|++|.+..+.
T Consensus 78 ~~~~-g~id~lv~nAg~~ 94 (252)
T 3h7a_A 78 ADAH-APLEVTIFNVGAN 94 (252)
T ss_dssp HHHH-SCEEEEEECCCCC
T ss_pred HHhh-CCceEEEECCCcC
Confidence 12 5789999876653
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.93 E-value=7.9 Score=30.94 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=49.9
Q ss_pred CCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC-cccc-----
Q 026858 65 HSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ-DQIN----- 134 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-~~~~----- 134 (232)
.++ +||=.|++.|+ ++..+++.|+ +|++++.++. .......+.... ..++.+...|+.+. ....
T Consensus 11 ~~k--~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl~~~~~~v~~~~~~ 84 (311)
T 3o26_A 11 KRR--CAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSN---HENVVFHQLDVTDPIATMSSLADF 84 (311)
T ss_dssp -CC--EEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT---CCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CCc--EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC---CCceEEEEccCCCcHHHHHHHHHH
Confidence 556 88888876654 3344555688 9999998873 444444333322 23578888898876 3211
Q ss_pred --cCCCCccEEEEcccCC
Q 026858 135 --ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~~ 150 (232)
...++.|++|.+..+.
T Consensus 85 ~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 85 IKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHSSCCEEEECCCCC
T ss_pred HHHhCCCCCEEEECCccc
Confidence 1125799999877654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=83.88 E-value=1.1 Score=37.20 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=53.1
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
..+++ +||=+|+ |. |.....+++. |+ +|+++ .++. ++.++ ..+ . .. .+ .......
T Consensus 148 ~~~g~--~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~----~lG--a----~~--i~-~~~~~~~~~~~ 210 (343)
T 3gaz_A 148 VQDGQ--TVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVR----DLG--A----TP--ID-ASREPEDYAAE 210 (343)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHH----HHT--S----EE--EE-TTSCHHHHHHH
T ss_pred CCCCC--EEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHH----HcC--C----CE--ec-cCCCHHHHHHH
Confidence 44778 9999994 44 7777777765 88 89999 5552 22222 122 1 11 23 2211100
Q ss_pred c-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 135 A-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 135 ~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
. ....+|+|+-+-. ...+....++|+++|+++..
T Consensus 211 ~~~~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 211 HTAGQGFDLVYDTLG-------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp HHTTSCEEEEEESSC-------THHHHHHHHHEEEEEEEEES
T ss_pred HhcCCCceEEEECCC-------cHHHHHHHHHHhcCCeEEEE
Confidence 0 1236999986432 14677788899999998875
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.86 E-value=4.6 Score=32.45 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=49.9
Q ss_pred CcccccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc
Q 026858 59 SHLLDFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 59 ~~~~~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~ 134 (232)
.++....++ .+|=.|++.|+ ++..+++.|+ +|+++|.+.. +......+.. ...++.+...|+.+.....
T Consensus 21 ~~m~~~~~k--~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dv~d~~~v~ 93 (283)
T 3v8b_A 21 QSMMNQPSP--VALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVG----AGGQAIALEADVSDELQMR 93 (283)
T ss_dssp ------CCC--EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTT----TTCCEEEEECCTTCHHHHH
T ss_pred hhhcCCCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHH
Confidence 344556777 89988887665 3345566688 9999998873 4444443322 2245678888887754321
Q ss_pred c-------CCCCccEEEEcccC
Q 026858 135 A-------LKPPFDLVIAADVV 149 (232)
Q Consensus 135 ~-------~~~~fD~Ii~~~~~ 149 (232)
. ..++.|++|.+..+
T Consensus 94 ~~~~~~~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 94 NAVRDLVLKFGHLDIVVANAGI 115 (283)
T ss_dssp HHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhCCCCEEEECCCC
Confidence 1 12479999986654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=83.81 E-value=8.5 Score=30.19 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=51.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+++|.++. .......+.... .++.+...|+.+......
T Consensus 9 ~l~~k--~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~ 81 (256)
T 3gaf_A 9 HLNDA--VAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG----GKAIGLECNVTDEQHREAVIK 81 (256)
T ss_dssp CCTTC--EEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEECCCCCHHHHHHHHH
Confidence 45677 88888887665 3355566698 8999998863 444444443322 346778888877543211
Q ss_pred ----CCCCccEEEEcccCC
Q 026858 136 ----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~~ 150 (232)
..++.|+++.+....
T Consensus 82 ~~~~~~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 82 AALDQFGKITVLVNNAGGG 100 (256)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 124789999876553
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=83.53 E-value=10 Score=32.77 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCC------------CCceEEEEeecCC
Q 026858 65 HSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVL------------NKSLKTSVLYWNN 129 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~------------~~~i~~~~~d~~~ 129 (232)
.+. ..-=||.|. |+ ++..+++.|. +|++.|.++. ++..... ...... ..++.+.. +
T Consensus 10 ~~~--~~~ViGlGyvGlp~A~~La~~G~-~V~~~D~~~~kv~~L~~g--~~pi~epgl~~ll~~~~~~g~l~~tt-d--- 80 (431)
T 3ojo_A 10 HGS--KLTVVGLGYIGLPTSIMFAKHGV-DVLGVDINQQTIDKLQNG--QISIEEPGLQEVYEEVLSSGKLKVST-T--- 80 (431)
T ss_dssp --C--EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT--CCSSCCTTHHHHHHHHHHTTCEEEES-S---
T ss_pred cCC--ccEEEeeCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHCC--CCCcCCCCHHHHHHhhcccCceEEeC-c---
Confidence 455 556677776 66 5577777888 9999999983 3333221 000000 11122211 1
Q ss_pred CcccccCCCCccEEEEcccCCC------cc---cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHH
Q 026858 130 QDQINALKPPFDLVIAADVVYI------EE---SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEM 190 (232)
Q Consensus 130 ~~~~~~~~~~fD~Ii~~~~~~~------~~---~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~ 190 (232)
....|+|+.+=+.-. .. .+....+.+.+.+++|. +++....-.+.+.+.+.+.
T Consensus 81 -------~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~-iVV~~STV~pgtt~~v~~~ 142 (431)
T 3ojo_A 81 -------PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGN-TIIVESTIAPKTMDDFVKP 142 (431)
T ss_dssp -------CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTE-EEEECSCCCTTHHHHTHHH
T ss_pred -------hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCC-EEEEecCCChhHHHHHHHH
Confidence 124688887543321 11 25556667777777765 5555555556666555443
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=83.47 E-value=5.8 Score=32.49 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=57.7
Q ss_pred ccCCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
.+... +|.=||+|. |. ++..+++.|. .|++. .++ .++..+++- .+......... ......... . ....
T Consensus 16 ~~~~~--kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g-~~~~~~~~~~~-~~~~~~~~~--~-~~~~ 86 (318)
T 3hwr_A 16 YFQGM--KVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATG-LRLETQSFDEQ-VKVSASSDP--S-AVQG 86 (318)
T ss_dssp ----C--EEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHC-EEEECSSCEEE-ECCEEESCG--G-GGTT
T ss_pred hccCC--cEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCC-eEEEcCCCcEE-EeeeeeCCH--H-HcCC
Confidence 34555 899999987 44 6667777787 89988 665 233333211 11000000000 011111111 1 1246
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
+|+|+.+-..+ ....+++.+...++++..++.....-.
T Consensus 87 ~D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~~nGi~ 124 (318)
T 3hwr_A 87 ADLVLFCVKST---DTQSAALAMKPALAKSALVLSLQNGVE 124 (318)
T ss_dssp CSEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEECSSSS
T ss_pred CCEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 89999865443 567888888888888877766655444
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=83.35 E-value=7.1 Score=30.73 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=49.7
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ +||=.|++.|+ ++..+++.|+ +|+++|.++. .......+... ...+.+...|+.+......
T Consensus 26 ~l~~k--~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~ 98 (262)
T 3rkr_A 26 SLSGQ--VAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAA----GGEAESHACDLSHSDAIAAFAT 98 (262)
T ss_dssp TTTTC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHH
T ss_pred ccCCC--EEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHh----CCceeEEEecCCCHHHHHHHHH
Confidence 45667 88988876554 2344455588 8999998873 44444444332 2346777888776553211
Q ss_pred ----CCCCccEEEEcccC
Q 026858 136 ----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~ 149 (232)
..++.|++|.+...
T Consensus 99 ~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 99 GVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 12468999987655
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=82.95 E-value=5.5 Score=31.59 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=63.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh--HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP--VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~--~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+.++... ........+... ..++.+...|+.+......
T Consensus 15 ~l~~k--~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~ 87 (270)
T 3is3_A 15 RLDGK--VALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKAL----GSDAIAIKADIRQVPEIVKLF 87 (270)
T ss_dssp CCTTC--EEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHH
T ss_pred CcCCC--EEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHH
Confidence 34677 89988887665 3355566688 888887643 233444433332 2346778888877553211
Q ss_pred -----CCCCccEEEEcccCCCc--------ccHH-----------HHHHHHHHhhCCCcEEEEEEe
Q 026858 136 -----LKPPFDLVIAADVVYIE--------ESAA-----------QLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~~~~--------~~~~-----------~~l~~l~~~l~pgG~l~i~~~ 177 (232)
..++.|++|.+..+... +++. .+++.+.+.++.+|++++...
T Consensus 88 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 88 DQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp HHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 12478999976555321 1122 234455666677888887643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=7 Score=35.60 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=36.0
Q ss_pred CCccEEEEcccCC---Cccc-HHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 138 PPFDLVIAADVVY---IEES-AAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 138 ~~fD~Ii~~~~~~---~~~~-~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
..||.++. |.+. +++. -..++..+.++++|||++..... . ..+...+. .+|.+...+
T Consensus 178 ~~~d~~~~-D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~-~-----~~vr~~L~~aGf~v~~~~ 239 (676)
T 3ps9_A 178 QKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS-A-----GFVRRGLQDAGFTMQKRK 239 (676)
T ss_dssp TCEEEEEE-CCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC-C-----HHHHHHHHHHTCEEEEEE
T ss_pred CcccEEEE-CCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC-c-----HHHHHHHHhCCeEEEecc
Confidence 57999997 4332 2222 25678999999999998764321 1 23344343 588887765
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=1.7 Score=35.81 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=51.5
Q ss_pred cEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+||=+|+ |. |...+.+++. |+ ++++++.++. .+.+++ .+.. ..+..-+...........+.+|+|+-
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~----~v~~~~~~~~~~~~~~~~~~~d~vid 223 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGAS----EVISREDVYDGTLKALSKQQWQGAVD 223 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCS----EEEEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc----EEEECCCchHHHHHHhhcCCccEEEE
Confidence 7999997 44 7777777665 88 8999998762 333322 1211 11111111100000011236999885
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+-. . ..+....++++++|++++..
T Consensus 224 ~~g-----~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 224 PVG-----G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp SCC-----T--HHHHHHHTTEEEEEEEEECC
T ss_pred CCc-----H--HHHHHHHHhhcCCCEEEEEe
Confidence 422 1 25677788899999988753
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.73 E-value=8.5 Score=30.33 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=51.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+++|.++. .......+.... ..++.+...|+.+......
T Consensus 7 ~l~~k--~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dv~~~~~v~~~~~ 80 (262)
T 3pk0_A 7 DLQGR--SVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLG---SGKVIGVQTDVSDRAQCDALAG 80 (262)
T ss_dssp CCTTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTS---SSCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCC--EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhC---CCcEEEEEcCCCCHHHHHHHHH
Confidence 55778 88888876654 3345556688 9999998873 444444443322 2356788888877553211
Q ss_pred ----CCCCccEEEEcccCC
Q 026858 136 ----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~~ 150 (232)
..++.|++|.+..+.
T Consensus 81 ~~~~~~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 81 RAVEEFGGIDVVCANAGVF 99 (262)
T ss_dssp HHHHHHSCCSEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 124789999876553
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=82.49 E-value=4.3 Score=32.45 Aligned_cols=80 Identities=11% Similarity=0.185 Sum_probs=50.6
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+++|.++ ........+.... .++.+...|+.+......
T Consensus 30 ~l~gk--~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~~~~~~~ 102 (275)
T 4imr_A 30 GLRGR--TALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG----GTAQELAGDLSEAGAGTDLIE 102 (275)
T ss_dssp CCTTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT----CCEEEEECCTTSTTHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC----CeEEEEEecCCCHHHHHHHHH
Confidence 45677 88888877654 3345556688 999999886 3444444333322 346778888877653211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
..++.|++|.+...
T Consensus 103 ~~~~~g~iD~lvnnAg~ 119 (275)
T 4imr_A 103 RAEAIAPVDILVINASA 119 (275)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11579999987665
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=82.05 E-value=8 Score=30.74 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=49.1
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ ++|=-|++.|+ ++..+++.|+ +|+++|.++. .......+.... .++.....|+.+......
T Consensus 25 ~l~~k--~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~ 97 (270)
T 3ftp_A 25 TLDKQ--VAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAG----LEGRGAVLNVNDATAVDALVE 97 (270)
T ss_dssp TTTTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHT----CCCEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEEeCCCHHHHHHHHH
Confidence 34667 88888876654 3345556688 9999998873 444444443332 234667778776543211
Q ss_pred ----CCCCccEEEEcccC
Q 026858 136 ----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~ 149 (232)
..++.|++|.+..+
T Consensus 98 ~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 98 STLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 12478999987654
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=81.73 E-value=3.2 Score=35.76 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=54.2
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC--------
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ-------- 130 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-------- 130 (232)
..+++ +||=.|+ |. |...+.+++. |+ ++++++.++. ++.+ +..+... .+.....++...
T Consensus 218 ~~~g~--~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~----~~lGa~~--~i~~~~~~~~~~~~~~~~~~ 288 (447)
T 4a0s_A 218 MKQGD--IVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAV----RALGCDL--VINRAELGITDDIADDPRRV 288 (447)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH----HHTTCCC--EEEHHHHTCCTTGGGCHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH----HhcCCCE--EEeccccccccccccccccc
Confidence 34778 9999997 44 7777777765 77 8888887763 2222 2222111 011111111000
Q ss_pred --------ccc-ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 131 --------DQI-NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 131 --------~~~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
... ......+|+|+-+.. ...+....++++++|++++.
T Consensus 289 ~~~~~~~~~~v~~~~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 289 VETGRKLAKLVVEKAGREPDIVFEHTG-------RVTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHHHHSSCCSEEEECSC-------HHHHHHHHHHSCTTCEEEES
T ss_pred chhhhHHHHHHHHHhCCCceEEEECCC-------chHHHHHHHHHhcCCEEEEE
Confidence 000 001236999996432 13567778899999998885
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=81.73 E-value=6.4 Score=31.75 Aligned_cols=82 Identities=12% Similarity=0.081 Sum_probs=49.4
Q ss_pred ccccCCCCCcEEEeCccc--cH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc
Q 026858 61 LLDFHSTRRRAIELGAGC--GA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 61 ~~~~~~~~~~VLElGcGt--G~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~ 134 (232)
+....++ ++|=.|++. |+ ++..+++.|+ +|+++|.++. ............ .+.+...|+.+.....
T Consensus 25 ~~~l~~k--~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~ 96 (296)
T 3k31_A 25 GMLMEGK--KGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG-----VKLTVPCDVSDAESVD 96 (296)
T ss_dssp CCTTTTC--EEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT-----CCEEEECCTTCHHHHH
T ss_pred hhccCCC--EEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC-----CeEEEEcCCCCHHHHH
Confidence 3355778 899999853 43 4456666788 8999998863 222222222221 1367777877754321
Q ss_pred c-------CCCCccEEEEcccCC
Q 026858 135 A-------LKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ~-------~~~~fD~Ii~~~~~~ 150 (232)
. ..++.|++|.+..+.
T Consensus 97 ~~~~~~~~~~g~iD~lVnnAG~~ 119 (296)
T 3k31_A 97 NMFKVLAEEWGSLDFVVHAVAFS 119 (296)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCcC
Confidence 1 125789999876554
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.45 E-value=7.9 Score=30.81 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=50.4
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+++|-++........+... ..++.+...|+.+......
T Consensus 28 ~l~gk--~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 100 (273)
T 3uf0_A 28 SLAGR--TAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADG----GGSAEAVVADLADLEGAANVAEE 100 (273)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTT----TCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHH
Confidence 45677 89988887664 3455566688 899999655444433333322 2446777888776543211
Q ss_pred --CCCCccEEEEcccCC
Q 026858 136 --LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 --~~~~fD~Ii~~~~~~ 150 (232)
..++.|++|.+..+.
T Consensus 101 ~~~~g~iD~lv~nAg~~ 117 (273)
T 3uf0_A 101 LAATRRVDVLVNNAGII 117 (273)
T ss_dssp HHHHSCCCEEEECCCCC
T ss_pred HHhcCCCcEEEECCCCC
Confidence 124789999876554
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=81.41 E-value=4.1 Score=32.12 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=48.8
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+++|.++. +....... ..++.+...|+.+.....
T Consensus 5 ~l~gk--~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~ 74 (255)
T 4eso_A 5 NYQGK--KAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGA 74 (255)
T ss_dssp TTTTC--EEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHH
Confidence 34667 89988887665 3355566688 9999998863 33333322 124577788877654321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
...++.|+++.+..+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~ 93 (255)
T 4eso_A 75 AAGQTLGAIDLLHINAGVS 93 (255)
T ss_dssp HHHHHHSSEEEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 1124789999766553
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=81.27 E-value=18 Score=30.18 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=26.1
Q ss_pred CCCCCcEEEeCccc-cH-HHHHHHHhCCCcEEEEcch
Q 026858 65 HSTRRRAIELGAGC-GA-AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s 99 (232)
..+ +||=+|||. |. ++..+++.|.++++.+|.+
T Consensus 117 ~~~--~VlvvG~GglGs~va~~La~aGvg~i~lvD~D 151 (353)
T 3h5n_A 117 KNA--KVVILGCGGIGNHVSVILATSGIGEIILIDND 151 (353)
T ss_dssp HTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred hCC--eEEEECCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence 356 899999986 55 5567777899999999975
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=81.16 E-value=15 Score=28.90 Aligned_cols=83 Identities=11% Similarity=0.197 Sum_probs=49.7
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---c
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~ 135 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+++|.++. .......+.... ....+.....|+.+..... .
T Consensus 7 ~l~~k--~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~ 81 (267)
T 3t4x_A 7 QLKGK--TALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQY--PDAILQPVVADLGTEQGCQDVIE 81 (267)
T ss_dssp CCTTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHC--TTCEEEEEECCTTSHHHHHHHHH
T ss_pred ccCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhC--CCceEEEEecCCCCHHHHHHHHH
Confidence 34667 88888876654 3345556688 9999998863 444444443332 1234566677776644211 1
Q ss_pred CCCCccEEEEcccCC
Q 026858 136 LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~ 150 (232)
.-++.|++|.+....
T Consensus 82 ~~g~id~lv~nAg~~ 96 (267)
T 3t4x_A 82 KYPKVDILINNLGIF 96 (267)
T ss_dssp HCCCCSEEEECCCCC
T ss_pred hcCCCCEEEECCCCC
Confidence 235789999876553
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=80.94 E-value=5.5 Score=32.67 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=55.0
Q ss_pred ccCCCCCcEEEeCc--cccHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGA--GCGAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc--GtG~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
..+++ +||-.|+ |.|.....+++ .|+ +|+++|.++. ++.++. .+.. . ..+........
T Consensus 143 ~~~g~--~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~----~g~~-----~--~~d~~~~~~~~~i~~ 208 (333)
T 1wly_A 143 VKPGD--YVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK----LGCH-----H--TINYSTQDFAEVVRE 208 (333)
T ss_dssp CCTTC--EEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCS-----E--EEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCC-----E--EEECCCHHHHHHHHH
Confidence 34677 9999995 34766665554 487 9999999873 333322 1211 1 12333221100
Q ss_pred c-CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 A-LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. ....+|+|+-+..- ..++...++++++|+++...
T Consensus 209 ~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 209 ITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp HHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred HhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence 0 12369999965331 34667788999999988754
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=80.91 E-value=6.1 Score=34.13 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=54.6
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc-------
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD------- 131 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~------- 131 (232)
..++. +||=+|+ |. |.+++.+|+. |+ ++++++.++. ++.+++ .+.. . ..+.....
T Consensus 226 ~~~g~--~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~----lGa~-----~--vi~~~~~d~~~~~~~ 291 (456)
T 3krt_A 226 MKQGD--NVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRA----MGAE-----A--IIDRNAEGYRFWKDE 291 (456)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----HTCC-----E--EEETTTTTCCSEEET
T ss_pred CCCCC--EEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHh----hCCc-----E--EEecCcCcccccccc
Confidence 34777 9999998 54 7777777765 77 8888887763 333321 1211 1 11111110
Q ss_pred -------------cc-ccCC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 132 -------------QI-NALK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 132 -------------~~-~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.. .... ..+|+|+-+-. ...+....++++++|+++++
T Consensus 292 ~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 292 NTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp TEECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEES
T ss_pred cccchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEE
Confidence 00 0011 36999985421 14677788899999998875
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=80.84 E-value=12 Score=30.02 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=50.1
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcch------------h-HHHHHHHHHHhcCCCCCCceEEEEee
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDIS------------P-VMPALKHNLKRNKPVLNKSLKTSVLY 126 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s------------~-~~~~~~~n~~~~~~~~~~~i~~~~~d 126 (232)
...++ ++|=.|++.|+ ++..+++.|+ +|+++|.+ + .+......+... ..++.+...|
T Consensus 25 ~l~gk--~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D 97 (299)
T 3t7c_A 25 KVEGK--VAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL----GRRIIASQVD 97 (299)
T ss_dssp TTTTC--EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECC
T ss_pred ccCCC--EEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhc----CCceEEEECC
Confidence 45677 89989987765 3455566688 99999875 2 233333333322 2456788888
Q ss_pred cCCCccccc-------CCCCccEEEEcccC
Q 026858 127 WNNQDQINA-------LKPPFDLVIAADVV 149 (232)
Q Consensus 127 ~~~~~~~~~-------~~~~fD~Ii~~~~~ 149 (232)
+.+...... ..++.|++|.+..+
T Consensus 98 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 127 (299)
T 3t7c_A 98 VRDFDAMQAAVDDGVTQLGRLDIVLANAAL 127 (299)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 877653211 12578999976654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.62 E-value=13 Score=29.16 Aligned_cols=88 Identities=18% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-----
Q 026858 65 HSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA----- 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~----- 135 (232)
.++ ++|=.|++.|+ ++..+++.|+ +|+++|.++. .......+.... ....+.+...|+.+......
T Consensus 6 ~~k--~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (267)
T 2gdz_A 6 NGK--VALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKV 80 (267)
T ss_dssp TTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCC--EEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhc--CCCceEEEecCCCCHHHHHHHHHHH
Confidence 456 78888875543 3344455588 8999998762 333333222211 12346777788776543211
Q ss_pred --CCCCccEEEEcccCCCcccHHH
Q 026858 136 --LKPPFDLVIAADVVYIEESAAQ 157 (232)
Q Consensus 136 --~~~~fD~Ii~~~~~~~~~~~~~ 157 (232)
..++.|++|.+......+.+..
T Consensus 81 ~~~~g~id~lv~~Ag~~~~~~~~~ 104 (267)
T 2gdz_A 81 VDHFGRLDILVNNAGVNNEKNWEK 104 (267)
T ss_dssp HHHHSCCCEEEECCCCCCSSSHHH
T ss_pred HHHcCCCCEEEECCCCCChhhHHH
Confidence 1246899998776654454443
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=80.60 E-value=3.4 Score=34.44 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=49.9
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEee-cC-CCcccccCC
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLY-WN-NQDQINALK 137 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d-~~-~~~~~~~~~ 137 (232)
..++. +||=+|+ |. |..++.+|+. |+..+..++.++........++..+.. ..+..-+ +. .........
T Consensus 165 ~~~g~--~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~----~vi~~~~~~~~~~~~~~~~~ 238 (357)
T 1zsy_A 165 LQPGD--SVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE----HVITEEELRRPEMKNFFKDM 238 (357)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS----EEEEHHHHHSGGGGGTTSSS
T ss_pred cCCCC--EEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc----EEEecCcchHHHHHHHHhCC
Confidence 34778 9999997 44 8888888775 884445555543211111112222211 1111100 00 000000011
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+.+|+|+-+ .. -..+ ....++++++|++++.
T Consensus 239 ~~~Dvvid~--~g----~~~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 239 PQPRLALNC--VG----GKSS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp CCCSEEEES--SC----HHHH-HHHHTTSCTTCEEEEC
T ss_pred CCceEEEEC--CC----cHHH-HHHHHhhCCCCEEEEE
Confidence 248999853 22 1222 3467899999998876
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=80.55 E-value=12 Score=32.09 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=23.0
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchh
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISP 100 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~ 100 (232)
+|.=||+|. |. ++..+++.|. +|+++|.++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 566788887 55 5566677787 899999987
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=80.49 E-value=3.3 Score=32.94 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=49.8
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-H-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-V-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
...++ +||=.|++.|+ ++..+++.|+ +|++++.+. . ........... ..++.+...|..+......
T Consensus 26 ~l~~k--~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~ 98 (271)
T 4iin_A 26 QFTGK--NVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEK----GYKAAVIKFDAASESDFIEAI 98 (271)
T ss_dssp CCSCC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHH
T ss_pred ccCCC--EEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhc----CCceEEEECCCCCHHHHHHHH
Confidence 55778 89988887664 3345556688 899998743 2 33333333332 2346778888776543211
Q ss_pred -----CCCCccEEEEcccCC
Q 026858 136 -----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~~ 150 (232)
..+..|++|.+....
T Consensus 99 ~~~~~~~g~id~li~nAg~~ 118 (271)
T 4iin_A 99 QTIVQSDGGLSYLVNNAGVV 118 (271)
T ss_dssp HHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 124789999876653
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.47 E-value=4.3 Score=32.82 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=50.2
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
.+.++ .+|=-|++.|+ .+..+++.|+ +|+.+|.++. ++.....+ ..+......|+.+.....
T Consensus 26 rL~gK--valVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~ 95 (273)
T 4fgs_A 26 RLNAK--IAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI-------GGGAVGIQADSANLAELDRLYE 95 (273)
T ss_dssp TTTTC--EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHH
T ss_pred hhCCC--EEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-------CCCeEEEEecCCCHHHHHHHHH
Confidence 35788 88888988876 4466677798 9999999873 44333322 123466777877765321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
..-++.|++|.+...
T Consensus 96 ~~~~~~G~iDiLVNNAG~ 113 (273)
T 4fgs_A 96 KVKAEAGRIDVLFVNAGG 113 (273)
T ss_dssp HHHHHHSCEEEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 123678999976654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=80.38 E-value=13 Score=32.25 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=58.6
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCC------------CCceEEEEeecCCCcccc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVL------------NKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~------------~~~i~~~~~d~~~~~~~~ 134 (232)
+|.=||+|. |. ++..+++.|. +|++.|.++. +..... ..+.... ...+.+. ... .
T Consensus 4 kI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~--g~~~i~e~gl~~~l~~~~~~~~l~~t-----~d~--~ 73 (450)
T 3gg2_A 4 DIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNS--GTIPIYEPGLEKMIARNVKAGRLRFG-----TEI--E 73 (450)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH--TCSCCCSTTHHHHHHHHHHTTSEEEE-----SCH--H
T ss_pred EEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHc--CCCcccCCCHHHHHHhhcccCcEEEE-----CCH--H
Confidence 677788876 54 4566667787 9999999983 333322 1110000 1112211 110 0
Q ss_pred cCCCCccEEEEcccCCC-------cccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHH
Q 026858 135 ALKPPFDLVIAADVVYI-------EESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMC 191 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~-------~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~ 191 (232)
..-...|+|+.+-+... ...+..+++.+.+.+++|..+ +....-.+.+.+.+.+.+
T Consensus 74 ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iV-V~~STv~pgt~~~l~~~l 136 (450)
T 3gg2_A 74 QAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILI-VTKSTVPVGSYRLIRKAI 136 (450)
T ss_dssp HHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEE-EECSCCCTTHHHHHHHHH
T ss_pred HHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEE-EEeeeCCCcchHHHHHHH
Confidence 00134699987543321 125777888888888876544 443344444444444433
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=80.35 E-value=6.3 Score=32.74 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=53.7
Q ss_pred ccCCCCCcEEEeCc-c-ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----c
Q 026858 63 DFHSTRRRAIELGA-G-CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc-G-tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~ 134 (232)
..+++ +||-.|+ | .|.....+++. |+ +|+++|.++. ++.+ +. .+.. ...+....... .
T Consensus 160 ~~~g~--~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~---~g~~-------~~~~~~~~~~~~~~~~ 225 (354)
T 2j8z_A 160 VQAGD--YVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMA-EK---LGAA-------AGFNYKKEDFSEATLK 225 (354)
T ss_dssp CCTTC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HH---HTCS-------EEEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HH---cCCc-------EEEecCChHHHHHHHH
Confidence 34677 9999984 3 36666555554 87 8999998873 3333 21 1211 11233222110 0
Q ss_pred cC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 AL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. ...+|+|+-+..- ..+....++|+++|++++..
T Consensus 226 ~~~~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 226 FTKGAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp HTTTSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEECC
T ss_pred HhcCCCceEEEECCCc-------hHHHHHHHhccCCCEEEEEe
Confidence 01 1369999865421 14566778899999988764
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=80.22 E-value=9.4 Score=29.77 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=48.1
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
...++ ++|=-|++.|+ ++..+++.|+ +|+++|.++. .......... .......|+.+......
T Consensus 6 ~l~gk--~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~~~~~ 75 (248)
T 3op4_A 6 NLEGK--VALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGD-------NGKGMALNVTNPESIEAVLK 75 (248)
T ss_dssp CCTTC--EEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGG-------GEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcc-------cceEEEEeCCCHHHHHHHHH
Confidence 45677 88888887654 3355566688 8999998873 3333332221 24666777776543211
Q ss_pred ----CCCCccEEEEcccCC
Q 026858 136 ----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~~ 150 (232)
..++.|+++.+..+.
T Consensus 76 ~~~~~~g~iD~lv~nAg~~ 94 (248)
T 3op4_A 76 AITDEFGGVDILVNNAGIT 94 (248)
T ss_dssp HHHHHHCCCSEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 124789999876553
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.17 E-value=8 Score=30.72 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=47.7
Q ss_pred cEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-------CCC
Q 026858 70 RAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-------LKP 138 (232)
Q Consensus 70 ~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-------~~~ 138 (232)
++|=.|++.|+ ++..+++.|+ +|+++|.++. +......+.... .++.+...|+.+...... ..+
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAG----GTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 78888877654 3345556688 8999998863 444444443322 345777788877543211 124
Q ss_pred CccEEEEcccCC
Q 026858 139 PFDLVIAADVVY 150 (232)
Q Consensus 139 ~fD~Ii~~~~~~ 150 (232)
+.|++|.+..+.
T Consensus 81 ~iD~lVnnAG~~ 92 (264)
T 3tfo_A 81 RIDVLVNNAGVM 92 (264)
T ss_dssp CCCEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 789999876553
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=80.16 E-value=9.5 Score=32.26 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=61.5
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccC
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVV 149 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~ 149 (232)
+||.++-+-|.+++.++. +. +++.+.-+.. .....+.|+... .. ...+ ......||+|+.--+-
T Consensus 48 ~~l~~n~~~g~~~~~~~~-~~-~~~~~~~~~~---~~~~l~~~~~~~----~~-~~~~------~~~~~~~d~v~~~~Pk 111 (381)
T 3dmg_A 48 RALDLNPGVGWGSLPLEG-RM-AVERLETSRA---AFRCLTASGLQA----RL-ALPW------EAAAGAYDLVVLALPA 111 (381)
T ss_dssp EEEESSCTTSTTTGGGBT-TB-EEEEEECBHH---HHHHHHHTTCCC----EE-CCGG------GSCTTCEEEEEEECCG
T ss_pred cEEEecCCCCccccccCC-CC-ceEEEeCcHH---HHHHHHHcCCCc----cc-cCCc------cCCcCCCCEEEEECCc
Confidence 899999999987766642 23 6666644441 112245555221 11 1111 1124579999974332
Q ss_pred C-CcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 150 Y-IEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 150 ~-~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
. .....+..+..+.+.|+|||.++++...+. ..+.+.+.+.
T Consensus 112 ~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~--g~~~~~~~~~ 153 (381)
T 3dmg_A 112 GRGTAYVQASLVAAARALRMGGRLYLAGDKNK--GFERYFKEAR 153 (381)
T ss_dssp GGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGG--THHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhCCCCCEEEEEEccHH--HHHHHHHHHH
Confidence 1 112457788888899999999999886554 2444555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 232 | |||
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.84 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.78 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.72 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.72 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.7 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.69 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.62 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.62 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.61 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.6 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.59 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.59 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.57 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.56 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.56 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.56 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.56 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.56 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.55 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.55 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.55 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.54 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.54 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.54 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.54 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.53 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.52 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.5 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.49 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.46 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.46 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.46 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.43 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.43 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.42 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.42 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.41 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.41 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.41 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.38 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.36 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.35 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.34 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.33 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.33 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.33 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.32 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.31 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.31 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.29 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.28 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.27 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.26 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.24 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.22 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.22 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.21 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.19 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.17 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.16 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.15 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.14 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.13 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.11 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.95 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.88 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.85 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.82 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.82 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.81 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.8 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.78 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.66 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.6 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.55 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.52 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.45 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.44 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.27 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.25 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.18 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.16 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.1 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.07 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.01 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.98 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.96 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.95 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.93 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.92 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.9 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.84 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.84 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.82 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.68 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.35 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.93 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.87 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.85 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.82 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.78 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.75 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.67 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.55 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.49 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.45 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.28 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.18 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.09 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.07 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.76 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.65 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.61 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.58 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.96 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.96 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.8 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.55 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.52 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.42 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.34 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.19 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.14 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.02 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.4 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.17 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.06 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 92.97 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.84 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 92.24 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.18 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 92.17 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.0 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.73 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.46 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.24 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.03 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 90.98 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.56 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.37 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.15 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.09 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.8 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.52 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.35 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.27 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.15 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.07 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.43 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.94 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.82 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 87.36 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 87.09 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.87 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 86.67 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 86.3 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 85.65 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.18 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.7 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 84.5 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 84.23 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.87 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.45 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 82.28 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 82.23 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 81.6 | |
| d1ffva2 | 79 | Carbone monoxide (CO) dehydrogenase iron-sulfur pr | 81.52 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 81.35 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 81.14 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 80.99 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 80.93 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 80.48 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 80.28 |
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=1.2e-19 Score=141.37 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=119.4
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.++..+.|+.+++.+.+|.++.++- +.++..|.+++. ..+++ +|||+|||+|.+++.++.
T Consensus 13 ~~~~~~~g~~~~~~t~~gvF~~~~~-d~~t~lLi~~l~-----------------~~~~~--~VLDiGcG~G~~~~~la~ 72 (194)
T d1dusa_ 13 IVEDILRGKKLKFKTDSGVFSYGKV-DKGTKILVENVV-----------------VDKDD--DILDLGCGYGVIGIALAD 72 (194)
T ss_dssp EEEEEETTEEEEEEEETTSTTTTSC-CHHHHHHHHHCC-----------------CCTTC--EEEEETCTTSHHHHHHGG
T ss_pred EEEEEECCeeEEEEcCCCccCCCCc-CHHHHHHHHhCC-----------------cCCCC--eEEEEeecCChhHHHHHh
Confidence 8999999999999999998877664 446666666553 33567 999999999999999998
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCccc-HHHHHHHHHHh
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEES-AAQLVRAMEAL 165 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-~~~~l~~l~~~ 165 (232)
.+. +++++|+|+ ++..+++|+..++.. ..++.+...|+.... .++.||+|+++++++.... .+.+++.+.++
T Consensus 73 ~~~-~v~~iD~s~~~i~~a~~n~~~~~l~-~~~i~~~~~d~~~~~----~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~ 146 (194)
T d1dusa_ 73 EVK-STTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKEL 146 (194)
T ss_dssp GSS-EEEEEESCHHHHHHHHHHHHHTTCT-TSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHH
T ss_pred hcc-ccceeeeccccchhHHHHHHHhCCc-cceEEEEEcchhhhh----ccCCceEEEEcccEEecchhhhhHHHHHHHh
Confidence 776 999999998 577888888877632 234677777764422 2468999999988876544 57899999999
Q ss_pred hCCCcEEEEEEeecChhHHHHHHHHHhc
Q 026858 166 VADDGVVLLGYQLRSPEAHKLFWEMCAE 193 (232)
Q Consensus 166 l~pgG~l~i~~~~r~~~~~~~~~~~~~~ 193 (232)
|+|||.+++...... ....+...+.+
T Consensus 147 LkpgG~l~i~~~~~~--~~~~~~~~l~~ 172 (194)
T d1dusa_ 147 LKDNGEIWVVIQTKQ--GAKSLAKYMKD 172 (194)
T ss_dssp EEEEEEEEEEEESTH--HHHHHHHHHHH
T ss_pred cCcCcEEEEEEeCcC--CHHHHHHHHHH
Confidence 999999988764432 23344444444
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.78 E-value=1.3e-18 Score=140.78 Aligned_cols=155 Identities=25% Similarity=0.257 Sum_probs=115.2
Q ss_pred CeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEE
Q 026858 15 DALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIV 94 (232)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~ 94 (232)
...+.|.-+|| +..|+-.+|++..+.+++.+... +++ +|||+|||+|.+++.+++.|+ +|+
T Consensus 86 ~~~~~i~i~pg-~aFGTG~H~TT~l~l~~l~~~~~---------------~g~--~VLDiGcGsG~l~i~aa~~g~-~V~ 146 (254)
T d2nxca1 86 GAEIPLVIEPG-MAFGTGHHETTRLALKALARHLR---------------PGD--KVLDLGTGSGVLAIAAEKLGG-KAL 146 (254)
T ss_dssp SSSEEEECCCC------CCSHHHHHHHHHHHHHCC---------------TTC--EEEEETCTTSHHHHHHHHTTC-EEE
T ss_pred CcceEEEEccc-cccCccccchhhHHHHHHHhhcC---------------ccC--EEEEcccchhHHHHHHHhcCC-EEE
Confidence 44678888898 77777777999999999988755 788 999999999999999999897 899
Q ss_pred EEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 95 LTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 95 ~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
++|+|+ ++..+++|++.|+.. +.+...++... ...++||+|+++- ....+..+++.+.++|+|||+++
T Consensus 147 gvDis~~av~~A~~na~~n~~~----~~~~~~d~~~~----~~~~~fD~V~ani---~~~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 147 GVDIDPMVLPQAEANAKRNGVR----PRFLEGSLEAA----LPFGPFDLLVANL---YAELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp EEESCGGGHHHHHHHHHHTTCC----CEEEESCHHHH----GGGCCEEEEEEEC---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEECChHHHHHHHHHHHHcCCc----eeEEecccccc----ccccccchhhhcc---ccccHHHHHHHHHHhcCCCcEEE
Confidence 999999 688999999988743 24555443321 1246899999863 23467788999999999999999
Q ss_pred EEEeecChhHHHHHHHHHh-cCceEEEec
Q 026858 174 LGYQLRSPEAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 174 i~~~~r~~~~~~~~~~~~~-~~f~~~~~~ 201 (232)
++..... ....+.+.+. .+|.+.+..
T Consensus 216 lSgil~~--~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 216 LTGILKD--RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEEEGG--GHHHHHHHHHHTTCEEEEEE
T ss_pred EEecchh--hHHHHHHHHHHCCCEEEEEE
Confidence 9765443 2345565555 488876553
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=3.7e-17 Score=130.46 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=88.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..+++.+. +|+++|+|+ ++..++++...+.. .++.+...|....+ ..+++||
T Consensus 14 ~~~~~--rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~---~~~~~~~~d~~~~~---~~~~~fD 84 (234)
T d1xxla_ 14 CRAEH--RVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGV---ENVRFQQGTAESLP---FPDDSFD 84 (234)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTC---CSEEEEECBTTBCC---SCTTCEE
T ss_pred CCCCC--EEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccc---cccccccccccccc---ccccccc
Confidence 56888 999999999999999999886 999999998 46666666665542 34677777765432 3457899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|++..++++..+...+++++.++|+|||+++++....
T Consensus 85 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 85 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred eeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 99999999988899999999999999999999976543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2.2e-17 Score=132.75 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=102.2
Q ss_pred eechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHH
Q 026858 33 VWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLK 110 (232)
Q Consensus 33 ~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~ 110 (232)
.+|.+....+.+.+... ..+++ +|||||||+|..+..+++. ++ +++++|+|+. +..++++..
T Consensus 14 ~~p~~~~~~~~l~~~~~-------------l~pg~--~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~ 77 (245)
T d1nkva_ 14 HNPFTEEKYATLGRVLR-------------MKPGT--RILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAE 77 (245)
T ss_dssp SSSCCHHHHHHHHHHTC-------------CCTTC--EEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcC-------------CCCCC--EEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhHHHHHHH
Confidence 36777777777877777 77889 9999999999999988876 66 9999999984 667777766
Q ss_pred hcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 111 RNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 111 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
..+ +.+++.+...|+.... .+++||+|++..++++..+...+++++.++|+|||++++...
T Consensus 78 ~~g--l~~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 78 ELG--VSERVHFIHNDAAGYV----ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp HTT--CTTTEEEEESCCTTCC----CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Hhh--ccccchhhhhHHhhcc----ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 665 4567888888876542 356899999999999999999999999999999999999764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.70 E-value=8.4e-17 Score=127.72 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=88.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|..+..+++.++ +|+++|+|+ ++..++.+....+ ..++.+...++.+.+ ..+++||
T Consensus 13 l~~~~--rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~---~~~i~~~~~d~~~l~---~~~~~fD 83 (231)
T d1vl5a_ 13 LKGNE--EVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNG---HQQVEYVQGDAEQMP---FTDERFH 83 (231)
T ss_dssp CCSCC--EEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCC-CCC---SCTTCEE
T ss_pred CCCcC--EEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccc---ccccccccccccccc---ccccccc
Confidence 44667 999999999999999999887 999999998 4666666666554 235778887765533 3457899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|++..++++..+...+++++.++|+|||++++.+...
T Consensus 84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred cccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99999999999999999999999999999999976543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=1e-16 Score=126.43 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=80.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..+++.++ +|+|+|+|+ ++..++.+...... .+.+...|..+. +...++||+|
T Consensus 37 ~~~--~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~----~~~~~~~d~~~l---~~~~~~fD~I 106 (226)
T d1ve3a1 37 KRG--KVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES----NVEFIVGDARKL---SFEDKTFDYV 106 (226)
T ss_dssp SCC--EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC----CCEEEECCTTSC---CSCTTCEEEE
T ss_pred CCC--EEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc----cccccccccccc---cccCcCceEE
Confidence 556 999999999999999999887 999999998 45566655544332 235555554442 2345789999
Q ss_pred EEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++..++++. .++..+++.+.++|+|||++++...
T Consensus 107 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 107 IFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 999999764 4788899999999999999988764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.68 E-value=2.1e-16 Score=129.57 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=88.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|.++..+++. ++ +|+++|+|+. +..++.+....+ +..++.+...++.+.+ ..+++|
T Consensus 65 l~~~~--~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~g--l~~~v~~~~~d~~~l~---~~~~sf 136 (282)
T d2o57a1 65 LQRQA--KGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIP---CEDNSY 136 (282)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTSCS---SCTTCE
T ss_pred CCCCC--EEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhccccccc--cccccccccccccccc---cccccc
Confidence 44778 9999999999999999876 77 9999999995 556666555544 4567888888876543 345789
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
|+|++..++++..+...+++.+.++|+|||++++....
T Consensus 137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEee
Confidence 99999999988889999999999999999999997643
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.4e-15 Score=119.58 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=110.6
Q ss_pred HHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC--
Q 026858 37 SLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK-- 113 (232)
Q Consensus 37 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~-- 113 (232)
...|.+++.+... ..++. +|||+|||+|..+..+|+.|+ +|+++|+|+ ++..+++......
T Consensus 30 ~~~l~~~~~~~l~-------------~~~~~--rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~ 93 (229)
T d2bzga1 30 HQLLKKHLDTFLK-------------GKSGL--RVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSE 93 (229)
T ss_dssp CHHHHHHHHHHHT-------------TCCSC--EEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHhcC-------------CCCCC--EEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccc
Confidence 4556677766544 34667 999999999999999999999 999999999 4544444322110
Q ss_pred ------------CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 114 ------------PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 114 ------------~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
......+.+...|+..... ...+.||+|+...+++ ..+..+..++.+.++|+|||++++.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 94 EPITEIPGTKVFKSSSGNISLYCCSIFDLPR--TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp EECTTSTTCEEEEETTSSEEEEESCGGGGGG--SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred cchhcccccceeeecCCcEEEEEcchhhccc--cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence 0012235555555433221 2346799999988886 45788999999999999999988876543
Q ss_pred Ch---------hHHHHHHHHHhcCceEEEecCC-CCCCCCCC---C--ceEEEEEEec
Q 026858 180 SP---------EAHKLFWEMCAEVFLIEKVPHE-DLHPDYGY---E--ETDVYILRKK 222 (232)
Q Consensus 180 ~~---------~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~---~--~~~l~~~~~~ 222 (232)
.+ -....+.+++...|.++.+... ...+.+.. . ...+|.+.+|
T Consensus 172 ~~~~~~gpp~~~~~~el~~lf~~~~~i~~le~~~~~~~~~~~~gl~~l~e~~y~l~~k 229 (229)
T d2bzga1 172 DPTKHPGPPFYVPHAEIERLFGKICNIRCLEKVDAFEERHKSWGIDCLFEKLYLLTEK 229 (229)
T ss_dssp CTTTCCCSSCCCCHHHHHHHHTTTEEEEEEEEEECCCGGGGGGTCSCCEEEEEEEEEC
T ss_pred CCCCCCCCCCCCCHHHHHHHhcCCCEEEEEEEecccCcchhhcCcchHhheeEEEeeC
Confidence 21 2355677777778887766432 22222211 1 2347777765
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.2e-15 Score=119.11 Aligned_cols=131 Identities=11% Similarity=0.142 Sum_probs=94.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++. +|||||||+|..+..++..+..+|+++|+|+ ++..++++...... ..+.+...|+.+.. ...++||+
T Consensus 59 ~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~---~~~~f~~~d~~~~~---~~~~~fD~ 130 (222)
T d2ex4a1 59 TGTS--CALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK---RVRNYFCCGLQDFT---PEPDSYDV 130 (222)
T ss_dssp CCCS--EEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG---GEEEEEECCGGGCC---CCSSCEEE
T ss_pred CCCC--EEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc---cccccccccccccc---cccccccc
Confidence 3456 8999999999999887765555899999998 46666665544331 23566776654432 23568999
Q ss_pred EEEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeecCh------------hHHHHHHHHHhc-CceEEEecC
Q 026858 143 VIAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLRSP------------EAHKLFWEMCAE-VFLIEKVPH 202 (232)
Q Consensus 143 Ii~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~~------------~~~~~~~~~~~~-~f~~~~~~~ 202 (232)
|++..++++..+ +..+++.++++|+|||.+++....... .....+.+++.+ ||++.....
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 999999986543 568999999999999999997543321 135667777764 898766654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=2.2e-15 Score=120.86 Aligned_cols=102 Identities=17% Similarity=0.229 Sum_probs=80.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+.+ +|||||||||..+..+++.++ +|+|+|+|+ ++..++++...++. ++.+...|+.+.. ..+.||+|
T Consensus 41 ~~~--~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~----~i~~~~~d~~~l~----~~~~fD~I 109 (251)
T d1wzna1 41 EVR--RVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL----KIEFLQGDVLEIA----FKNEFDAV 109 (251)
T ss_dssp CCC--EEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC----CCEEEESCGGGCC----CCSCEEEE
T ss_pred CCC--EEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc----cchheehhhhhcc----cccccchH
Confidence 456 899999999999999999998 999999998 56677777665542 3577777765543 24589999
Q ss_pred EEcc-cCC--CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAAD-VVY--IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~-~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++.. +++ +..+...+++.++++|+|||++++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 9864 443 335678999999999999999998653
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.60 E-value=1.3e-15 Score=121.52 Aligned_cols=100 Identities=18% Similarity=0.273 Sum_probs=75.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|..+..++..++ +|+|+|+|+. +..++.+ ... .+...+..+ .+..+++||+|
T Consensus 42 ~~~--~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~----~~~-----~~~~~~~~~---l~~~~~~fD~i 106 (246)
T d2avna1 42 NPC--RVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREK----GVK-----NVVEAKAED---LPFPSGAFEAV 106 (246)
T ss_dssp SCC--EEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHH----TCS-----CEEECCTTS---CCSCTTCEEEE
T ss_pred CCC--EEEEECCCCchhcccccccce-EEEEeecccccccccccc----ccc-----ccccccccc---cccccccccce
Confidence 556 999999999999999999988 9999999994 4444432 211 122333322 33445789999
Q ss_pred EEc-ccCCCcccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 144 IAA-DVVYIEESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 144 i~~-~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
++. .++++..+...+++.+.++|+|||.+++..+..
T Consensus 107 i~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 107 LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp EECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred eeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 985 567778889999999999999999999987543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.59 E-value=6.8e-15 Score=116.44 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh----CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL----GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~----~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
++. +|||||||+|..+..+++. ++ +|+|+|.|+ ++..++++..... ....+.+...+.... ....
T Consensus 39 ~~~--~vLDlGCGtG~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~--~~~~~~~~~~d~~~~-----~~~~ 108 (225)
T d1im8a_ 39 ADS--NVYDLGCSRGAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHV-----EIKN 108 (225)
T ss_dssp TTC--EEEEESCTTCHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSC--CSSCEEEECSCTTTC-----CCCS
T ss_pred CCC--EEEEeccchhhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhc--ccchhhhccchhhcc-----cccc
Confidence 667 9999999999999999874 45 999999998 5666666665443 223344444333221 2357
Q ss_pred ccEEEEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEeec
Q 026858 140 FDLVIAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQLR 179 (232)
Q Consensus 140 fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~~r 179 (232)
+|+|+++.++++ .++...+++.++++|+|||.+++.+..+
T Consensus 109 ~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 109 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred ceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 899999888864 3688999999999999999999987654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=5.6e-15 Score=114.74 Aligned_cols=103 Identities=19% Similarity=0.324 Sum_probs=82.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.++ +|||||||+|..+..+++.++ +|+++|+|+ +++.++.+....+. ..+.+...|+.... .+++||+|
T Consensus 30 ~~g--rvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~~d~~~~~----~~~~fD~I 99 (198)
T d2i6ga1 30 APG--RTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL---DNLQTDLVDLNTLT----FDGEYDFI 99 (198)
T ss_dssp CSC--EEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---TTEEEEECCTTTCC----CCCCEEEE
T ss_pred CCC--cEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc---cchhhhheeccccc----ccccccEE
Confidence 446 899999999999999999998 999999998 46666666655442 23667766665544 25689999
Q ss_pred EEcccCCC--cccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 144 IAADVVYI--EESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~--~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++..++++ ...+..+++.+.++|+|||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999874 35678999999999999999998754
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.57 E-value=1.4e-14 Score=116.65 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=81.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||||||+|..+..+++.+..+|+|+|+|+. +..++....... ...++.+...|...... ...++||+|
T Consensus 24 ~~~--~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~--~~~~v~f~~~D~~~~~~--~~~~~fD~V 97 (252)
T d1ri5a_ 24 RGD--SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHM--DLGKEFDVI 97 (252)
T ss_dssp TTC--EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCC--CCSSCEEEE
T ss_pred CcC--EEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcC--CCcceEEEEcchhhhcc--cccccceEE
Confidence 667 99999999999888888888768999999994 556555444333 33456777777644331 123579999
Q ss_pred EEcccCCCc----ccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 144 IAADVVYIE----ESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 144 i~~~~~~~~----~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
++..++++. ..+..+++++.++|+|||++++..+.
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 999888643 46778999999999999999987754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.56 E-value=1.3e-14 Score=111.58 Aligned_cols=136 Identities=10% Similarity=-0.015 Sum_probs=91.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCC---------CCCceEEEEeecCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPV---------LNKSLKTSVLYWNNQDQ 132 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~---------~~~~i~~~~~d~~~~~~ 132 (232)
..+++ +|||+|||+|..+..+|+.|+ +|+++|+|+. +..+++........ ....+.+...++.....
T Consensus 18 ~~~~~--rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 94 (201)
T d1pjza_ 18 VVPGA--RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA 94 (201)
T ss_dssp CCTTC--EEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred CCCCC--EEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence 44777 999999999999999999999 9999999994 55555544222100 01223444444433221
Q ss_pred cccCCCCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEeecCh---------hHHHHHHHHHhcCceEEEec
Q 026858 133 INALKPPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQLRSP---------EAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~~r~~---------~~~~~~~~~~~~~f~~~~~~ 201 (232)
.....||+|++..++++. .....+++.+.++|||||.+++....... ...+.+.+.+...|++..+.
T Consensus 95 --~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~~~ 172 (201)
T d1pjza_ 95 --RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVG 172 (201)
T ss_dssp --HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEE
T ss_pred --ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEEEE
Confidence 112469999998888644 45789999999999999998886543321 12344555666678876665
Q ss_pred CC
Q 026858 202 HE 203 (232)
Q Consensus 202 ~~ 203 (232)
..
T Consensus 173 ~~ 174 (201)
T d1pjza_ 173 GQ 174 (201)
T ss_dssp ES
T ss_pred Ee
Confidence 44
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.56 E-value=5.1e-15 Score=117.30 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=80.5
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..++ +|||||||+|..+..++..+. +|+++|+|+. +..++.+. ...+.+...++.+.. .+++||+
T Consensus 19 ~~~~--~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~----~~~~fD~ 84 (225)
T d2p7ia1 19 FRPG--NLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQ----LPRRYDN 84 (225)
T ss_dssp CCSS--CEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCC----CSSCEEE
T ss_pred CCCC--cEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc-------ccccccccccccccc----ccccccc
Confidence 4567 899999999999999998887 8999999994 44443321 123567666654433 2568999
Q ss_pred EEEcccCCCcccHHHHHHHHH-HhhCCCcEEEEEEeec
Q 026858 143 VIAADVVYIEESAAQLVRAME-ALVADDGVVLLGYQLR 179 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~-~~l~pgG~l~i~~~~r 179 (232)
|++..++++..+...++..+. ++|+|||.+++..++.
T Consensus 85 I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 85 IVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred ccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence 999999999999999999998 7899999999987643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.7e-15 Score=118.35 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=98.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCC-------------------------
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNK------------------------- 118 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~------------------------- 118 (232)
++. +|||||||+|..++.++..++.+|+++|+|+ ++..+++++.........
T Consensus 51 ~g~--~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGD--TLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEE--EEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCC--EEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 556 9999999999988888777766899999999 566777766544322100
Q ss_pred -ceE-EEEeecCCCc-ccccCCCCccEEEEcccCCCc----ccHHHHHHHHHHhhCCCcEEEEEEeecC-----------
Q 026858 119 -SLK-TSVLYWNNQD-QINALKPPFDLVIAADVVYIE----ESAAQLVRAMEALVADDGVVLLGYQLRS----------- 180 (232)
Q Consensus 119 -~i~-~~~~d~~~~~-~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~pgG~l~i~~~~r~----------- 180 (232)
.+. ....+..... ......++||+|++..++++. ++...+++++.++|||||.+++......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 011 1111111111 112234679999999988644 4677899999999999999999754322
Q ss_pred --hhHHHHHHHHHhc-CceEEEecCCCC--CCCCCCCceEEEEEEecC
Q 026858 181 --PEAHKLFWEMCAE-VFLIEKVPHEDL--HPDYGYEETDVYILRKKK 223 (232)
Q Consensus 181 --~~~~~~~~~~~~~-~f~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 223 (232)
+...+.+.+.+++ ||++.++..... ........-.++++.||+
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 1235667777764 998877743222 221122233455555554
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.56 E-value=1.4e-14 Score=111.57 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=88.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||+|||+|.+++.+|+.+. +|+++|.++ ++..+++|++.++ +..++.+...|..... .....||
T Consensus 31 ~~~g~--~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~~gda~~~~---~~~~~~D 102 (186)
T d1l3ia_ 31 PGKND--VAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHG--LGDNVTLMEGDAPEAL---CKIPDID 102 (186)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEESCHHHHH---TTSCCEE
T ss_pred CCCCC--EEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcC--CCcceEEEECchhhcc---cccCCcC
Confidence 45778 999999999999999998765 999999998 6888899998876 5556777777643322 2245799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
.|++.... .....+++.+.+.|+|||++++...... ....+.+.+.
T Consensus 103 ~v~~~~~~---~~~~~~~~~~~~~LkpgG~lvi~~~~~e--~~~~~~~~l~ 148 (186)
T d1l3ia_ 103 IAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAILLE--TKFEAMECLR 148 (186)
T ss_dssp EEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECBHH--HHHHHHHHHH
T ss_pred EEEEeCcc---ccchHHHHHHHHHhCcCCEEEEEeeccc--cHHHHHHHHH
Confidence 99987654 3567889999999999999988764332 2333444444
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.56 E-value=7.1e-14 Score=112.56 Aligned_cols=129 Identities=13% Similarity=0.157 Sum_probs=95.0
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
..+ +|||||||+|..+..+++. +..+++++|.++++..++++....+ +..++.+...|+... ...+||+|
T Consensus 80 ~~~--~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~--~~~rv~~~~~D~~~~-----~~~~~D~v 150 (253)
T d1tw3a2 80 NVR--HVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEG--LSDRVDVVEGDFFEP-----LPRKADAI 150 (253)
T ss_dssp TCS--EEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTT--CTTTEEEEECCTTSC-----CSSCEEEE
T ss_pred cCC--EEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhh--cccchhhccccchhh-----cccchhhe
Confidence 446 8999999999999999877 2338999999777777777766654 456788888876432 23579999
Q ss_pred EEcccCCCcc--cHHHHHHHHHHhhCCCcEEEEEEeecCh-----------------------hHHHHHHHHHhc-CceE
Q 026858 144 IAADVVYIEE--SAAQLVRAMEALVADDGVVLLGYQLRSP-----------------------EAHKLFWEMCAE-VFLI 197 (232)
Q Consensus 144 i~~~~~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~~r~~-----------------------~~~~~~~~~~~~-~f~~ 197 (232)
++..++++.. ....++++++++|+|||++++.+..... .+.+.+.+++++ ||.+
T Consensus 151 ~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~ 230 (253)
T d1tw3a2 151 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 230 (253)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred eeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeE
Confidence 9999998654 3457899999999999999997643211 023455566664 8987
Q ss_pred EEecC
Q 026858 198 EKVPH 202 (232)
Q Consensus 198 ~~~~~ 202 (232)
.++..
T Consensus 231 ~~v~~ 235 (253)
T d1tw3a2 231 EEVRQ 235 (253)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.55 E-value=6.6e-15 Score=117.98 Aligned_cols=100 Identities=13% Similarity=0.213 Sum_probs=76.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||||||+|..+..+++.+. +++|+|.|+ ++..++++....+. ++.+...|+.... ..++||+|
T Consensus 37 ~~~--~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~----~v~~~~~d~~~~~----~~~~fD~i 105 (246)
T d1y8ca_ 37 VFD--DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL----KPRLACQDISNLN----INRKFDLI 105 (246)
T ss_dssp CTT--EEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC----CCEEECCCGGGCC----CSCCEEEE
T ss_pred CCC--eEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc----cceeeccchhhhc----cccccccc
Confidence 446 899999999999999999998 999999999 45666665554432 3577776665433 24689999
Q ss_pred EEc-ccCC---CcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAA-DVVY---IEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~-~~~~---~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++. .+++ +..++..+++.++++|+|||.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 106 TCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 985 3433 4567888999999999999998874
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.55 E-value=4.5e-14 Score=115.46 Aligned_cols=103 Identities=13% Similarity=0.170 Sum_probs=80.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||+|.++..+++. |+ +|+++|+|+. +..+++.+...+ +...+.+...|.. ..+++|
T Consensus 50 l~~g~--~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~--l~~~~~~~~~d~~------~~~~~f 118 (280)
T d2fk8a1 50 LKPGM--TLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWE------DFAEPV 118 (280)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGG------GCCCCC
T ss_pred CCCCC--EEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhc--cccchhhhhhhhh------hhccch
Confidence 66888 9999999999999988876 87 9999999995 555555555544 4444555444332 235689
Q ss_pred cEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|.|++..++.+. ...+.+++.+.++|||||++++..
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 999999999755 567999999999999999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.55 E-value=2.8e-13 Score=106.01 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=88.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..|+. +|||||||+|..+..++.. +.++|+++|+++ ++..++++.+.. .++.+...+.............+
T Consensus 54 lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 54 LRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccceE
Confidence 55888 9999999999999999876 545899999999 566666655443 23566666655544322222345
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh-------hHHHHHHHHHhcCceEEEec
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP-------EAHKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~-------~~~~~~~~~~~~~f~~~~~~ 201 (232)
|+|+. .+++..+...++.++.++|+|||+++++...+.. .......+.++.+|++.+..
T Consensus 127 d~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i 192 (209)
T d1nt2a_ 127 DLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHG 192 (209)
T ss_dssp EEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 55443 3556678889999999999999999998654321 11233334455789876543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=9.3e-14 Score=114.04 Aligned_cols=116 Identities=13% Similarity=0.136 Sum_probs=88.2
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCC
Q 026858 38 LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPV 115 (232)
Q Consensus 38 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~ 115 (232)
....+++.+.+. ..++. +|||||||.|.+++.+|.. |+ +++++++|+. ...++..+...+
T Consensus 47 ~~k~~~~~~~l~-------------l~~G~--~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~-- 108 (291)
T d1kpia_ 47 YAKRKLALDKLN-------------LEPGM--TLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVD-- 108 (291)
T ss_dssp HHHHHHHHHTTC-------------CCTTC--EEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHhcC-------------CCCCC--EEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhc--
Confidence 445677777666 67889 9999999999999988754 88 9999999985 445555444444
Q ss_pred CCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc---------cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 116 LNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE---------SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 116 ~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+..++.+...|.. ..+++||.|++..++.+.. ..+.+++.+.++|+|||++++...
T Consensus 109 l~~~v~~~~~d~~------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 109 SPRRKEVRIQGWE------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp CSSCEEEEECCGG------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred cchhhhhhhhccc------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 4455666655432 2357899999999886543 478999999999999999998654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.54 E-value=7.9e-14 Score=112.45 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=88.8
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.+.. +|||+|||+|.++..++..++.+|+++|.++. +..++++.. + ...+.+...+.... ....++||+
T Consensus 92 ~~~~--~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~-~----~~~~~~~~~d~~~~---~~~~~~fD~ 161 (254)
T d1xtpa_ 92 HGTS--RALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA-G----MPVGKFILASMETA---TLPPNTYDL 161 (254)
T ss_dssp CCCS--EEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTT-T----SSEEEEEESCGGGC---CCCSSCEEE
T ss_pred CCCC--eEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccc-c----cccceeEEcccccc---ccCCCccce
Confidence 3556 99999999999998877665558999999994 444444322 1 12345655554332 234568999
Q ss_pred EEEcccCCCccc--HHHHHHHHHHhhCCCcEEEEEEeecCh-------------hHHHHHHHHHhc-CceEEEec
Q 026858 143 VIAADVVYIEES--AAQLVRAMEALVADDGVVLLGYQLRSP-------------EAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 143 Ii~~~~~~~~~~--~~~~l~~l~~~l~pgG~l~i~~~~r~~-------------~~~~~~~~~~~~-~f~~~~~~ 201 (232)
|++..++++..+ ...+++.++++|+|||.+++.+..... .....+.+++++ ||++.+..
T Consensus 162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 999999987644 568899999999999999996532210 124567777764 89875544
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=7e-14 Score=114.46 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=91.8
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC
Q 026858 36 CSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK 113 (232)
Q Consensus 36 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~ 113 (232)
+.....+++.+.+. ..++. +|||||||.|.+++.+|+. |+ +|+++++|+. +..+++.+...+
T Consensus 46 AQ~~k~~~~~~~l~-------------l~~G~--~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g 109 (285)
T d1kpga_ 46 AQIAKIDLALGKLG-------------LQPGM--TLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSE 109 (285)
T ss_dssp HHHHHHHHHHTTTT-------------CCTTC--EEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcC-------------CCCCC--EEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhh
Confidence 34446677877776 67889 9999999999999988765 88 9999999996 445555544443
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCc--ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIE--ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+..++.+...|+.. .+++||.|++...+.+. .....+++.+.++|+|||++++.+.
T Consensus 110 --~~~~v~~~~~d~~~------~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 110 --NLRSKRVLLAGWEQ------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp --CCSCEEEEESCGGG------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred --hhhhhHHHHhhhhc------ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 55677777776532 24689999999988655 5678999999999999999998543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.54 E-value=1.8e-14 Score=117.87 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=81.0
Q ss_pred CcEEEeCccccHHHHHHHHh---CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEE
Q 026858 69 RRAIELGAGCGAAGMAFYLL---GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVI 144 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~---~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii 144 (232)
.+|||||||+|..+..++.. +. +|+++|+|+ ++..++++..... .++.+...|..... ..++||+|+
T Consensus 29 ~~ILDiGcG~G~~~~~la~~~~~~~-~v~giD~s~~~l~~a~~~~~~~~----~~~~f~~~d~~~~~----~~~~fD~v~ 99 (281)
T d2gh1a1 29 VHIVDYGCGYGYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLP----YDSEFLEGDATEIE----LNDKYDIAI 99 (281)
T ss_dssp CEEEEETCTTTHHHHHHTTTSCTTC-EEEEEECCHHHHHHHHHHHHSSS----SEEEEEESCTTTCC----CSSCEEEEE
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCC-EEEEEecchhHhhhhhccccccc----cccccccccccccc----ccCCceEEE
Confidence 39999999999999999875 34 899999998 4667766665543 24677777665433 245799999
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+..++++..+...+++.+.++|||||.+++..+
T Consensus 100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 100 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 999999989999999999999999999998764
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2.3e-14 Score=119.16 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=84.3
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++++ +|||||||+|.+++.+|+.|+.+|+++|.++.+..+++++..|+ +..++.+...+..+.. ...++||+
T Consensus 31 ~~~~~--~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~--~~~~v~~~~~~~~~~~---~~~~~~D~ 103 (316)
T d1oria_ 31 LFKDK--VVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANK--LDHVVTIIKGKVEEVE---LPVEKVDI 103 (316)
T ss_dssp HHTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTT--CTTTEEEEESCTTTCC---CSSSCEEE
T ss_pred cCCcC--EEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhC--CccccceEeccHHHcc---cccceeEE
Confidence 45788 99999999999999999999879999999987667777777776 5567888887765543 23468999
Q ss_pred EEEcccC---CCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIAADVV---YIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~~~~~---~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
|++.... .+...++.++..+.++|+|||.++-
T Consensus 104 ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 104 IISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp EEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 9975443 3556789999999999999999763
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=3.3e-14 Score=118.82 Aligned_cols=104 Identities=15% Similarity=0.237 Sum_probs=83.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++++ +|||||||+|.+++.+|+.|+.+|+++|.++++..++++...++ ...++.+...+..... ....+||+
T Consensus 36 ~~~~~--~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~--~~~~i~~i~~~~~~l~---~~~~~~D~ 108 (328)
T d1g6q1_ 36 LFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNG--FSDKITLLRGKLEDVH---LPFPKVDI 108 (328)
T ss_dssp HHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTT--CTTTEEEEESCTTTSC---CSSSCEEE
T ss_pred cCCcC--EEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhC--ccccceEEEeehhhcc---CcccceeE
Confidence 45788 99999999999999999999889999999997777777777666 4566788887765543 23468999
Q ss_pred EEEcccC---CCcccHHHHHHHHHHhhCCCcEEE
Q 026858 143 VIAADVV---YIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 143 Ii~~~~~---~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
|++.... .+....+.++....++|||||+++
T Consensus 109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 9985443 466788999999999999999975
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=6.1e-13 Score=105.55 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=102.4
Q ss_pred ccceeechHH-HHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHH
Q 026858 29 VGTSVWPCSL-VLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPAL 105 (232)
Q Consensus 29 ~g~~~W~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~ 105 (232)
...|.|+--. -|+..+..-.. .+...++. +|||||||+|..+..+|.. +.+.|+++|+|+ +++.+
T Consensus 47 ~e~r~w~p~rsklaA~i~~gl~----------~l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a 114 (230)
T d1g8sa_ 47 EEYRIWNPNKSKLAAAIIKGLK----------VMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMREL 114 (230)
T ss_dssp EEEEECCTTTCHHHHHHHTTCC----------CCCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHH
T ss_pred ceeeeECCCccHHHHHHHhhHH----------hCCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHH
Confidence 3467787544 35555554332 11155788 9999999999999999987 345899999999 45555
Q ss_pred HHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecCh----
Q 026858 106 KHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSP---- 181 (232)
Q Consensus 106 ~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~---- 181 (232)
...+... ..+.....+...... ..+..+|++++...+++..+...++.++.+.|||||.++++...+..
T Consensus 115 ~~~a~~~-----~ni~~i~~d~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~ 187 (230)
T d1g8sa_ 115 LDACAER-----ENIIPILGDANKPQE--YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK 187 (230)
T ss_dssp HHHTTTC-----TTEEEEECCTTCGGG--GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS
T ss_pred HHHHhhh-----cccceEEEeeccCcc--cccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCC
Confidence 4433322 234555555554443 22346788777777888889999999999999999999998654431
Q ss_pred ---hHHHHHHHHHh-cCceEEEec
Q 026858 182 ---EAHKLFWEMCA-EVFLIEKVP 201 (232)
Q Consensus 182 ---~~~~~~~~~~~-~~f~~~~~~ 201 (232)
...+...+.++ .+|++.+..
T Consensus 188 ~~~~~~~e~~~~L~~aGF~ive~i 211 (230)
T d1g8sa_ 188 DPKEIFKEQKEILEAGGFKIVDEV 211 (230)
T ss_dssp CHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEe
Confidence 12333444554 489876553
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.2e-13 Score=114.58 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=81.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
.++++ +|||||||+|.+++.+|+.|+.+|+++|.++.+..++++...++ ...++.+...+..+.. ....+||+
T Consensus 33 ~~~~~--~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~--~~~~i~~~~~~~~~l~---~~~~~~D~ 105 (311)
T d2fyta1 33 IFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNK--LEDTITLIKGKIEEVH---LPVEKVDV 105 (311)
T ss_dssp GTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTT--CTTTEEEEESCTTTSC---CSCSCEEE
T ss_pred cCCcC--EEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhC--CCccceEEEeeHHHhc---CccccceE
Confidence 56788 99999999999999999999889999999996555555555555 4456788777665543 23468999
Q ss_pred EEEcccCC---CcccHHHHHHHHHHhhCCCcEEEE
Q 026858 143 VIAADVVY---IEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 143 Ii~~~~~~---~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
|++....+ ....++.++....++|+|||+++-
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 99854333 345677888888999999999874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=4.2e-14 Score=116.19 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=77.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCC-CCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVL-NKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~-~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..+++ +|||+|||+|..+..+++.|+ +|+++|+|+ ++..++++........ .........+|..........++|
T Consensus 54 ~~~~~--~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 130 (292)
T d1xvaa_ 54 QHGCH--RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGF 130 (292)
T ss_dssp HTTCC--EEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCE
T ss_pred hcCCC--EEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCc
Confidence 33557 999999999999999999998 999999999 5666666655443211 112234444443322111124579
Q ss_pred cEEEEcc-cCCC-------cccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 141 DLVIAAD-VVYI-------EESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 141 D~Ii~~~-~~~~-------~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
|.|++.. ++.+ ..+...+++++.++|+|||.+++...
T Consensus 131 d~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 131 DAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 9999754 4432 23578899999999999999988654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.3e-13 Score=112.36 Aligned_cols=106 Identities=13% Similarity=0.274 Sum_probs=74.2
Q ss_pred cEEEeCccccHHHHHHHHh------C-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc--------c
Q 026858 70 RAIELGAGCGAAGMAFYLL------G-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--------I 133 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~------~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--------~ 133 (232)
+|||||||+|.++..++.. + ..+++++|+|+. +..+.++..... .. ..+. ++|..... .
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-~~-~~~~---~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-NL-ENVK---FAWHKETSSEYQSRMLE 117 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-SC-TTEE---EEEECSCHHHHHHHHTT
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-cc-cccc---ccchhhhhhhhcchhcc
Confidence 7999999999988776543 1 126899999984 445555443321 11 2222 23322211 1
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
....++||+|++..++++..++..++++++++|+|||.+++......
T Consensus 118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 22356899999999999999999999999999999999998876554
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=1.6e-12 Score=102.83 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=100.6
Q ss_pred ccceeechHHH-HHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHH
Q 026858 29 VGTSVWPCSLV-LAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPA 104 (232)
Q Consensus 29 ~g~~~W~~~~~-L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~ 104 (232)
...|.|+--.= |+..+..-.. .+...+|. +|||+|||+|..+..+|.. | .++|+++|+++ +++.
T Consensus 46 ~e~R~w~p~rSKlaa~i~~~l~----------~l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~ 113 (227)
T d1g8aa_ 46 EEYRIWNPNRSKLGAAIMNGLK----------NFPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE 113 (227)
T ss_dssp EEEEECCTTTCHHHHHHHTTCC----------CCCCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred eeEEEECCCccHHHHHHHcccc----------ccccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHH
Confidence 45677863221 5555544332 11256888 9999999999999999986 3 45999999999 4566
Q ss_pred HHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC----
Q 026858 105 LKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS---- 180 (232)
Q Consensus 105 ~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~---- 180 (232)
+..+++.. ..+.....+.............+|+|+. + +..+.....++.++.+.|+|||+++++...+.
T Consensus 114 a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~ 186 (227)
T d1g8aa_ 114 LVPIVEER-----RNIVPILGDATKPEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT 186 (227)
T ss_dssp HHHHHSSC-----TTEEEEECCTTCGGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT
T ss_pred HHHHHHhc-----CCceEEEEECCCcccccccccceEEEEE-E-ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCC
Confidence 65554332 2245556665554443333456888875 3 44556778899999999999999999865442
Q ss_pred --hhH-HHHHHHHHhcCceEEEec
Q 026858 181 --PEA-HKLFWEMCAEVFLIEKVP 201 (232)
Q Consensus 181 --~~~-~~~~~~~~~~~f~~~~~~ 201 (232)
+.. .....+++.++|++.+..
T Consensus 187 ~~~~~v~~~v~~l~~~gf~iie~i 210 (227)
T d1g8aa_ 187 KEPEQVFREVERELSEYFEVIERL 210 (227)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEE
Confidence 111 222334455689876553
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.6e-13 Score=109.87 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=88.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCC--------------------------
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLN-------------------------- 117 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~-------------------------- 117 (232)
.+. +|||||||+|..++..+.....+|+++|+|+ +++.+++.+........
T Consensus 54 ~g~--~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 54 SGR--TLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CCS--EEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCc--EEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 566 9999999999887666655455999999999 45555554432211110
Q ss_pred -CceEEEEeecCCCccc---ccCCCCccEEEEcccCCCc----ccHHHHHHHHHHhhCCCcEEEEEEeecC---------
Q 026858 118 -KSLKTSVLYWNNQDQI---NALKPPFDLVIAADVVYIE----ESAAQLVRAMEALVADDGVVLLGYQLRS--------- 180 (232)
Q Consensus 118 -~~i~~~~~d~~~~~~~---~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~pgG~l~i~~~~r~--------- 180 (232)
........|+...... ....++||+|++..++++. .+...+++++.++|||||.+++....+.
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~ 211 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR 211 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcc
Confidence 0011222333333321 1224579999999988643 3678899999999999999999754222
Q ss_pred ----hhHHHHHHHHHhc-CceEEEec
Q 026858 181 ----PEAHKLFWEMCAE-VFLIEKVP 201 (232)
Q Consensus 181 ----~~~~~~~~~~~~~-~f~~~~~~ 201 (232)
+-..+.+.+.+.+ ||++....
T Consensus 212 ~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 212 LTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 2345677777765 89877654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1e-12 Score=106.67 Aligned_cols=136 Identities=15% Similarity=0.228 Sum_probs=96.8
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhc
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRN 112 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~ 112 (232)
|.+..|+++...... ..+. +|||+|||+|.+++.++.. +..+++++|+|+ ++..+++|++.+
T Consensus 92 peTE~lv~~~l~~~~--------------~~~~--~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~ 155 (274)
T d2b3ta1 92 PDTECLVEQALARLP--------------EQPC--RILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL 155 (274)
T ss_dssp TTHHHHHHHHHHHSC--------------SSCC--EEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHhhhhc--------------cccc--ceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh
Confidence 456777777766543 1234 8999999999999998876 444999999998 688999999888
Q ss_pred CCCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-------------------------cHHHHHHHHHHhhC
Q 026858 113 KPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-------------------------SAAQLVRAMEALVA 167 (232)
Q Consensus 113 ~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~ 167 (232)
+ + .++.+...||-... ...+||+|+++++..... ....++....++|+
T Consensus 156 ~--~-~~v~~~~~d~~~~~----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~ 228 (274)
T d2b3ta1 156 A--I-KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV 228 (274)
T ss_dssp T--C-CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred C--c-ccceeeeccccccc----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC
Confidence 6 3 24788888875443 235899999988765332 24567788888999
Q ss_pred CCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 168 DDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 168 pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
|||.+++-..... .+...+.+. .+|.
T Consensus 229 ~~G~l~lEig~~q---~~~v~~~l~~~gf~ 255 (274)
T d2b3ta1 229 SGGFLLLEHGWQQ---GEAVRQAFILAGYH 255 (274)
T ss_dssp EEEEEEEECCSSC---HHHHHHHHHHTTCT
T ss_pred CCCEEEEEECchH---HHHHHHHHHHCCCC
Confidence 9999998643333 233444444 3664
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.42 E-value=1.2e-13 Score=102.86 Aligned_cols=106 Identities=22% Similarity=0.320 Sum_probs=83.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..++ +|||+|||||.+|+.++..|+.+|+++|.++ ++..+++|++.++ ...++.+...|+.... ....++||+
T Consensus 13 ~~g~--~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l--~~~~~~fDi 86 (152)
T d2esra1 13 FNGG--RVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAI--DCLTGRFDL 86 (152)
T ss_dssp CCSC--EEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHH--HHBCSCEEE
T ss_pred CCCC--eEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcc--cccchhhhcccccccc--cccccccce
Confidence 4678 9999999999999999989988999999998 5788889988876 4456777777654432 223568999
Q ss_pred EEEcccCCCcccHHHHHHHHHH--hhCCCcEEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEA--LVADDGVVLLGY 176 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~--~l~pgG~l~i~~ 176 (232)
|++ ++.|........+..+.. .|+++|.+++-.
T Consensus 87 If~-DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 87 VFL-DPPYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp EEE-CCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred eEe-chhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 998 556666677778887765 589999988754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.42 E-value=2.5e-13 Score=113.24 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=99.0
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK 113 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~ 113 (232)
......-.++..... +++ +|||+|||+|..++.+++.|+.+|+++|+|+ ++..+++|+..|+
T Consensus 130 lDqr~~r~~~~~~~~---------------~g~--~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ng 192 (324)
T d2as0a2 130 LDQRENRLALEKWVQ---------------PGD--RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNG 192 (324)
T ss_dssp STTHHHHHHHGGGCC---------------TTC--EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHhhcC---------------CCC--eeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcC
Confidence 345555666666544 678 9999999999999999999887999999999 5889999999997
Q ss_pred CCCCCceEEEEeecCCCcc-cccCCCCccEEEEcccCCCcc---------cHHHHHHHHHHhhCCCcEEEEEEeecChhH
Q 026858 114 PVLNKSLKTSVLYWNNQDQ-INALKPPFDLVIAADVVYIEE---------SAAQLVRAMEALVADDGVVLLGYQLRSPEA 183 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~ 183 (232)
+..++.+...|...... ......+||+|++.++.+... ....++..+.++|+|||.++++...+.- .
T Consensus 193 --l~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~-~ 269 (324)
T d2as0a2 193 --VEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHV-D 269 (324)
T ss_dssp --CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTS-C
T ss_pred --CCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccC-C
Confidence 44566777766433211 112345899999877655322 3455777778889999999998766653 3
Q ss_pred HHHHHHHH
Q 026858 184 HKLFWEMC 191 (232)
Q Consensus 184 ~~~~~~~~ 191 (232)
.+.|.+.+
T Consensus 270 ~~~f~~~v 277 (324)
T d2as0a2 270 LQMFKDMI 277 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45666543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.41 E-value=4e-12 Score=102.34 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=80.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++. +..+++++|+++++..+++++.... ...++.+...|.... .+..||+|++..+
T Consensus 84 ~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~--~~~ri~~~~~d~~~~-----~p~~~D~v~~~~v 156 (256)
T d1qzza2 84 HVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAG--LADRVTVAEGDFFKP-----LPVTADVVLLSFV 156 (256)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTT--CTTTEEEEECCTTSC-----CSCCEEEEEEESC
T ss_pred EEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcC--Ccceeeeeeeecccc-----ccccchhhhcccc
Confidence 8999999999999999887 2338999999777777777776654 456678887765432 2346999999999
Q ss_pred CCCcc--cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIEE--SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+++.. ....+++++++.|+|||++++.+.
T Consensus 157 Lh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 157 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 98554 456789999999999999999764
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=5.2e-13 Score=103.90 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=73.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||||||+|..+..++ +++++|.|+. +..+++ + .+.+...+..+.. ..+++||+|
T Consensus 36 ~~~--~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~---~-------~~~~~~~d~~~l~---~~~~~fD~I 95 (208)
T d1vlma_ 36 PEG--RGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARK---R-------GVFVLKGTAENLP---LKDESFDFA 95 (208)
T ss_dssp CSS--CEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHH---T-------TCEEEECBTTBCC---SCTTCEEEE
T ss_pred CCC--eEEEECCCCcccccccc-----eEEEEeCChhhcccccc---c-------ccccccccccccc---ccccccccc
Confidence 445 89999999998776552 5789999994 333322 1 1366666654332 345689999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
++..++++..++..+++++.++|+|||.+++......
T Consensus 96 ~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 96 LMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp EEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred ccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence 9999999999999999999999999999999875443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.41 E-value=7.1e-13 Score=106.23 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=87.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|.++..+|+. +.++|+++|.++ .++.+++|+.... ...++.+...|+.+.. .+..
T Consensus 83 i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~~~----~~~~ 154 (250)
T d1yb2a1 83 LRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADFI----SDQM 154 (250)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTCC----CSCC
T ss_pred CCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeeccc----ccce
Confidence 56888 9999999999999999876 345999999998 5778888887654 3356788887765543 2457
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCce
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFL 196 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~ 196 (232)
||.|++. . .+...++..+.++|||||++++..+.- .-.....+.++ .+|.
T Consensus 155 fD~V~ld-~----p~p~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 155 YDAVIAD-I----PDPWNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMH 205 (250)
T ss_dssp EEEEEEC-C----SCGGGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEE
T ss_pred eeeeeec-C----CchHHHHHHHHHhcCCCceEEEEeCCc--ChHHHHHHHHHHCCCc
Confidence 9999973 2 334467899999999999998765432 22344555555 4674
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.38 E-value=1.9e-12 Score=107.34 Aligned_cols=133 Identities=10% Similarity=0.077 Sum_probs=95.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
+++ +|||++||+|..++.++..|+.+|+++|+|+ ++..++.|...|+.. ..++.+...|.-.... ......+||+
T Consensus 144 ~g~--~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~-~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 144 AGK--TVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD-MANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp BTC--EEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC-CTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCC--ceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc-CcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 678 9999999999999999988888999999998 688999999998743 2456777776533211 1112357999
Q ss_pred EEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-----cCceEEEec
Q 026858 143 VIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-----EVFLIEKVP 201 (232)
Q Consensus 143 Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-----~~f~~~~~~ 201 (232)
|++.++.+.. .+...++..+.++|+|||.++++...+.- ..+.|...+. .+..+..+.
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~-~~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM-TVSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS-CHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccC-CHHHHHHHHHHHHHHcCCeEEEec
Confidence 9997775422 14567888899999999999998766553 2445554432 245555443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.7e-13 Score=108.80 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=72.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
+++ +|||||||+|..+..+++.+..+++++|+|+. +..++++..... ..+.....++.... .....++||.|
T Consensus 53 ~g~--~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~fD~i 125 (229)
T d1zx0a1 53 KGG--RVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT----HKVIPLKGLWEDVA-PTLPDGHFDGI 125 (229)
T ss_dssp TCE--EEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS----SEEEEEESCHHHHG-GGSCTTCEEEE
T ss_pred CCC--eEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc----cccccccccccccc-cccccccccce
Confidence 567 99999999999999998875458999999994 555555544332 22344444332211 11234689998
Q ss_pred EE-----cccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IA-----ADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~-----~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+. ...+++..+.+.+++++.++|||||++++.
T Consensus 126 ~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 126 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred eecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 84 333345567888999999999999999874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=2.2e-12 Score=104.04 Aligned_cols=122 Identities=13% Similarity=0.152 Sum_probs=85.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..|+. +|||+|||+|.+++.+|+. ..++|+++|.++ .++.+++|++........++.+...|..... ..++.
T Consensus 94 i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~---~~~~~ 168 (264)
T d1i9ga_ 94 IFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE---LPDGS 168 (264)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC---CCTTC
T ss_pred CCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc---ccCCC
Confidence 45888 9999999999999999987 345999999998 5777888876543223455677766654332 23568
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-c-Cce
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-E-VFL 196 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~-~f~ 196 (232)
||.|++. . .+...++..+.++|||||++++..+.-. -.+...+.++ . +|.
T Consensus 169 fDaV~ld-l----p~P~~~l~~~~~~LkpGG~lv~~~P~i~--Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 169 VDRAVLD-M----LAPWEVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWT 220 (264)
T ss_dssp EEEEEEE-S----SCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBC
T ss_pred cceEEEe-c----CCHHHHHHHHHhccCCCCEEEEEeCccC--hHHHHHHHHHHcCCee
Confidence 9999973 2 3445678899999999999987664432 2344455443 3 563
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=5.9e-12 Score=101.81 Aligned_cols=123 Identities=11% Similarity=0.016 Sum_probs=86.4
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||+|||+|.++..+|+. ..++|+++|.++ ++..+++|+...+ +...+.+...|.... .....
T Consensus 101 i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g--~~~~v~~~~~d~~~~----~~~~~ 172 (266)
T d1o54a_ 101 VKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEG----FDEKD 172 (266)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGC----CSCCS
T ss_pred CCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc--cccCcEEEecccccc----ccccc
Confidence 46888 9999999999999999876 234999999998 5778888887765 334455544443221 12346
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
||.|+. +..+...+++++.++|||||++++..+.- ...+...+.++ .+|...++
T Consensus 173 ~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--~Qv~~~~~~l~~~gF~~i~~ 227 (266)
T d1o54a_ 173 VDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIEV 227 (266)
T ss_dssp EEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEEE
T ss_pred eeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc--cHHHHHHHHHHHCCceeEEE
Confidence 898886 23455678999999999999999876432 33455566665 47854443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.33 E-value=8.2e-12 Score=96.39 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=54.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
...|+ +|||+|||||.+++.++..|+.+|+++|+++ ++..+++|.. .+.+...|+.. .+++||
T Consensus 46 dl~Gk--~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~--------~~~~~~~D~~~------l~~~fD 109 (197)
T d1ne2a_ 46 NIGGR--SVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------GVNFMVADVSE------ISGKYD 109 (197)
T ss_dssp SSBTS--EEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------TSEEEECCGGG------CCCCEE
T ss_pred CCCCC--EEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc--------cccEEEEehhh------cCCcce
Confidence 55788 9999999999999999999887899999998 3555555532 23566665532 346899
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
+|++++++.
T Consensus 110 ~Vi~NPPfg 118 (197)
T d1ne2a_ 110 TWIMNPPFG 118 (197)
T ss_dssp EEEECCCC-
T ss_pred EEEeCcccc
Confidence 999987763
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=5e-12 Score=99.05 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=71.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +|||||||+|..+..+|+. + ..+|+++|+++ ++..++.++..... .++.+...|..... ...++
T Consensus 73 l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~---~n~~~~~~d~~~~~---~~~~~ 144 (213)
T d1dl5a1 73 LDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYGV---PEFSP 144 (213)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCC---GGGCC
T ss_pred ccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc---cccccccCchHHcc---ccccc
Confidence 55788 9999999999999999876 3 34899999998 46677777766542 23455444432222 23467
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
||+|++...+.+.. ..+.+.|+|||++++..
T Consensus 145 fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 145 YDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp EEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred hhhhhhhccHHHhH------HHHHHhcCCCcEEEEEE
Confidence 99999988776432 35678899999998743
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.33 E-value=6.2e-12 Score=97.81 Aligned_cols=104 Identities=11% Similarity=0.054 Sum_probs=78.7
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.|||||||+|..++.+|+. +-..++|+|+++ ++..+..++...+ + .++.+...|...... ...++++|.|++..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~--l-~Nv~~~~~Da~~l~~-~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE--A-QNVKLLNIDADTLTD-VFEPGEVKRVYLNF 107 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC--C-SSEEEECCCGGGHHH-HCCTTSCCEEEEES
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh--c-cCchhcccchhhhhc-ccCchhhhcccccc
Confidence 8999999999999999887 334999999998 5667777666655 2 347777777543321 12356899999887
Q ss_pred cCCCcccH--------HHHHHHHHHhhCCCcEEEEEEe
Q 026858 148 VVYIEESA--------AQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 148 ~~~~~~~~--------~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+..++... +.+++.++++|||||.|++.+.
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD 145 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 145 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence 77655542 5899999999999999999763
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=1.4e-11 Score=99.27 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=89.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
++. +|||+|||+|.+++.+|+.+..+|+++|+|+ ++..+++|++.|+ +.+++.+...|..... ..+.||.|
T Consensus 107 ~g~--~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~--l~~~v~~~~~D~~~~~----~~~~~D~I 178 (260)
T d2frna1 107 PDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNK--VEDRMSAYNMDNRDFP----GENIADRI 178 (260)
T ss_dssp TTC--EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEECSCTTTCC----CCSCEEEE
T ss_pred Ccc--EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhC--CCceEEEEEcchHHhc----cCCCCCEE
Confidence 677 9999999999999999988766999999999 6889999999997 5567888887765443 24579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC----hhHHHHHHHHHh-cCceEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRS----PEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~----~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+++.+.+.. .++..+.+++++||.+.+-..... ....+.+.+... .++.++..
T Consensus 179 i~~~p~~~~----~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 179 LMGYVVRTH----EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp EECCCSSGG----GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCchH----HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 987665543 355667788999999865432211 122344555444 36766544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=5.6e-12 Score=104.60 Aligned_cols=156 Identities=14% Similarity=0.164 Sum_probs=103.7
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.+.-.|-.+.|.-..+ ..||.-. .....-.++. ...++ +|||++||+|..++.+|+
T Consensus 108 ~~~v~E~G~~f~v~l~~~-~~tG~fl--Dqr~~r~~~~-----------------~~~g~--rVLDl~~gtG~~s~~~a~ 165 (318)
T d1wxxa2 108 RVQVQEGRVRYLVDLRAG-QKTGAYL--DQRENRLYME-----------------RFRGE--RALDVFSYAGGFALHLAL 165 (318)
T ss_dssp EEEEEETTEEEEEECSTT-SCCCCCG--GGHHHHHHGG-----------------GCCEE--EEEEETCTTTHHHHHHHH
T ss_pred eEEEEECCEEEEEechhc-cccccch--hhhhhHHHHH-----------------HhCCC--eeeccCCCCcHHHHHHHh
Confidence 567777787777765544 5555421 1111112221 22567 999999999999999887
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccEEEEcccCCCc--c-------cHH
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDLVIAADVVYIE--E-------SAA 156 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~--~-------~~~ 156 (232)
.+. +|+++|+|+ ++..+++|++.|+. ..+.+...|..+... .....++||+|++.++.+.. . ...
T Consensus 166 g~~-~V~~vD~s~~al~~a~~n~~~ngl---~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~ 241 (318)
T d1wxxa2 166 GFR-EVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYK 241 (318)
T ss_dssp HEE-EEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHH
T ss_pred cCC-cEEeecchHHHHHHHHHHHHHcCC---CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHH
Confidence 555 999999998 68899999999873 246666665433211 12234589999997766532 2 244
Q ss_pred HHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHH
Q 026858 157 QLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEM 190 (232)
Q Consensus 157 ~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~ 190 (232)
.++..+.++|+|||.++++..... ...+.|.+.
T Consensus 242 ~l~~~a~~lLkpGG~Lv~~scs~~-~~~~~f~~~ 274 (318)
T d1wxxa2 242 EVNLRAIKLLKEGGILATASCSHH-MTEPLFYAM 274 (318)
T ss_dssp HHHHHHHHTEEEEEEEEEEECCTT-SCHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEEEeCCcc-cCHHHHHHH
Confidence 577788889999999998775544 224445443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.31 E-value=1.7e-11 Score=100.71 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=101.0
Q ss_pred eEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHH
Q 026858 8 VIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYL 87 (232)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~ 87 (232)
.+.++.+|-.+.|.-..+ ..||.. ......=+|+...... ...++ +|||++||||.+++.+++
T Consensus 90 ~~~v~e~gl~f~v~~~~~-~~tG~f--~dqr~nr~~~~~~~~~------------~~~~~--rVLdlf~~tG~~sl~aa~ 152 (309)
T d2igta1 90 TWPLSLLGVEFLGRFTAF-RHVGVF--PEQIVHWEWLKNAVET------------ADRPL--KVLNLFGYTGVASLVAAA 152 (309)
T ss_dssp EEEEEETTEEEEEECCSS-SCCSCC--GGGHHHHHHHHHHHHH------------SSSCC--EEEEETCTTCHHHHHHHH
T ss_pred eEEEEEeEEEEEEeccCC-Cccccc--cchhHHHHHHHHHHhh------------ccCCC--eEEEecCCCcHHHHHHHh
Confidence 566777887777776555 556542 2333333333332210 12456 999999999999999999
Q ss_pred hCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-ccCCCCccEEEEcccCCCc----------ccH
Q 026858 88 LGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-NALKPPFDLVIAADVVYIE----------ESA 155 (232)
Q Consensus 88 ~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~~fD~Ii~~~~~~~~----------~~~ 155 (232)
.|+ +|+++|.|+ ++..+++|...|+.. ..++.+...|+...... .....+||+||+.++.+.. ...
T Consensus 153 ~GA-~V~~VD~s~~al~~a~~N~~ln~~~-~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~ 230 (309)
T d2igta1 153 AGA-EVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHL 230 (309)
T ss_dssp TTC-EEEEECSCHHHHHHHHHHHHHHTCT-TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHH
T ss_pred CCC-eEEEEeChHHHHHHHHHhhhhhccc-CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHH
Confidence 898 899999998 688999999988732 23467777665332211 1123579999997775521 235
Q ss_pred HHHHHHHHHhhCCCcEEEEEE
Q 026858 156 AQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 156 ~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..++..+.++|+|||.++++.
T Consensus 231 ~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 231 PLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHHHHHTBCTTCCEEEEE
T ss_pred HHHHHHHHHhcCCCCCEEEEe
Confidence 667778889999998766554
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=2.9e-12 Score=97.08 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=69.9
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~ 142 (232)
.+. +|||+|||+|.+++.++..|+ +++++|.|+ ++..+++|++.++. ..++.. .+...... ......+||+
T Consensus 41 ~g~--~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~--~~~v~~--~~~d~~~~~~~~~~~~fD~ 113 (171)
T d1ws6a1 41 RRG--RFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVA--LPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TCC--EEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEEC--SCHHHHHHHHHHTTCCEEE
T ss_pred CCC--eEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhcc--ccceee--eehhcccccccccCCccce
Confidence 667 999999999999999999898 899999999 58888999988763 233322 22211111 1123457999
Q ss_pred EEEcccCCCcccHHHHHHHH-HHhhCCCcEEEEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAM-EALVADDGVVLLGYQ 177 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l-~~~l~pgG~l~i~~~ 177 (232)
|++.++ |.....+.+...+ ..+++|||.+++-..
T Consensus 114 If~DPP-Y~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 114 AFMAPP-YAMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp EEECCC-TTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred eEEccc-cccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 998655 4333323332222 246899998877543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.6e-11 Score=99.35 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=69.3
Q ss_pred cEEEeCccccHHHHHHHHhC-CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLLG-LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|||||||+|..+..++... ..+++++|+|+. +..++++ . .++.+...|..+. +..+++||+|++..
T Consensus 87 ~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~----~----~~~~~~~~d~~~l---~~~~~sfD~v~~~~ 155 (268)
T d1p91a_ 87 AVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----Y----PQVTFCVASSHRL---PFSDTSMDAIIRIY 155 (268)
T ss_dssp EEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH----C----TTSEEEECCTTSC---SBCTTCEEEEEEES
T ss_pred EEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc----c----ccccceeeehhhc---cCCCCCEEEEeecC
Confidence 99999999999999888773 238999999994 4443332 1 2346766665443 33467899999877
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEeecC
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQLRS 180 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~ 180 (232)
.+.+ ++++.++|||||.+++..+...
T Consensus 156 ~~~~-------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 156 APCK-------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp CCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred CHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence 6653 5678999999999999987665
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=2.3e-11 Score=94.33 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=68.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
...|+ +|||+|||||.+++.++..|+.+|+++|+++ ++..+++|+..+.. ...+...|... ..++||
T Consensus 44 dl~g~--~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~----~~~~~~~d~~~------~~~~fD 111 (201)
T d1wy7a1 44 DIEGK--VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG----KFKVFIGDVSE------FNSRVD 111 (201)
T ss_dssp SSTTC--EEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT----SEEEEESCGGG------CCCCCS
T ss_pred CCCCC--EEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC----CceEEECchhh------hCCcCc
Confidence 45778 9999999999999998888877999999998 57788888776542 34555554322 346899
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+|++++++..... ..-...+.+.+.+++.++...
T Consensus 112 ~Vi~nPP~~~~~~-~~d~~~l~~~~~~~~~v~~ih 145 (201)
T d1wy7a1 112 IVIMNPPFGSQRK-HADRPFLLKAFEISDVVYSIH 145 (201)
T ss_dssp EEEECCCCSSSST-TTTHHHHHHHHHHCSEEEEEE
T ss_pred EEEEcCccccccc-cccHHHHHHHHhhcccchhcc
Confidence 9999877643211 111122334445556555443
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=2.5e-11 Score=98.13 Aligned_cols=123 Identities=12% Similarity=0.154 Sum_probs=87.5
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK 113 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~ 113 (232)
|.+..|.+++..... ..... +|+|+|||+|..++.+++.+..+|+++|+|+ ++..+++|++.++
T Consensus 93 peTE~lv~~~~~~~~-------------~~~~~--~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~ 157 (271)
T d1nv8a_ 93 PETEELVELALELIR-------------KYGIK--TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHG 157 (271)
T ss_dssp TTHHHHHHHHHHHHH-------------HHTCC--EEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhhhc-------------ccccc--EEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcC
Confidence 456777777776544 33445 8999999999999888877655999999999 6889999999887
Q ss_pred CCCCCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc--------------------cHHHHHHHHHHhhCCCcEEE
Q 026858 114 PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE--------------------SAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------------~~~~~l~~l~~~l~pgG~l~ 173 (232)
+..++.+...+|..... ...++||+|+++++.-... .+...-+-+.++|+|||.++
T Consensus 158 --~~~~~~i~~~~~~~~~~--~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~ 233 (271)
T d1nv8a_ 158 --VSDRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVL 233 (271)
T ss_dssp --CTTSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEE
T ss_pred --CCceeEEeecccccccc--cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEE
Confidence 44567777777754432 2346899999987753211 01222233567899999887
Q ss_pred EEE
Q 026858 174 LGY 176 (232)
Q Consensus 174 i~~ 176 (232)
+-.
T Consensus 234 ~Ei 236 (271)
T d1nv8a_ 234 MEI 236 (271)
T ss_dssp EEC
T ss_pred EEE
Confidence 754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.9e-11 Score=96.44 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=72.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-C-CCcEEEEcchh-HHHHHHHHHHhcCCC--CCCceEEEEeecCCCcccccCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-G-LADIVLTDISP-VMPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQINALK 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~-~~~v~~~D~s~-~~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~ 137 (232)
..++. +|||||||+|..+..+|+. + ..+|+++|.++ ++..+++|+...... ....+.+...|..... ...
T Consensus 74 l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~---~~~ 148 (224)
T d1i1na_ 74 LHEGA--KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY---AEE 148 (224)
T ss_dssp SCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC---GGG
T ss_pred cCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc---chh
Confidence 34778 9999999999999888876 3 44999999998 466777777654321 1234555555543322 134
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+.||+|++...+.... ..+.+.|+|||++++..
T Consensus 149 ~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 149 APYDAIHVGAAAPVVP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp CCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEE
Confidence 5799999987766432 35788999999999854
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.22 E-value=1e-10 Score=90.78 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=78.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
.|||||||+|...+.+|+. +-..++|+|+++ ++..+...+...+. .++.+...|...... .....++|.|++..
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l---~Ni~~~~~da~~l~~-~~~~~~~~~i~i~f 109 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV---PNIKLLWVDGSDLTD-YFEDGEIDRLYLNF 109 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---SSEEEEECCSSCGGG-TSCTTCCSEEEEES
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc---ccceeeecCHHHHhh-hccCCceehhcccc
Confidence 7999999999999999887 334899999998 46666666655542 346778777654332 12346799999877
Q ss_pred cCCCccc--------HHHHHHHHHHhhCCCcEEEEEEee
Q 026858 148 VVYIEES--------AAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 148 ~~~~~~~--------~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
+--++.. .+.+++.+.++|+|||.+++.+..
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~ 148 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 148 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECC
Confidence 6655443 268999999999999999987643
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.22 E-value=3.3e-11 Score=94.84 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=69.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|..+..+|+.+. +|+++|.++. ...++++.... .++.+...|...... ..++||
T Consensus 68 l~~g~--~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~-----~nv~~~~~d~~~g~~---~~~pfD 136 (224)
T d1vbfa_ 68 LHKGQ--KVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYE---EEKPYD 136 (224)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCG---GGCCEE
T ss_pred hcccc--eEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc-----cccccccCchhhcch---hhhhHH
Confidence 55788 999999999999999999876 9999999985 44444443321 346666665433321 246799
Q ss_pred EEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
.|++...+... ...+.+.|+|||++++.
T Consensus 137 ~Iiv~~a~~~i------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTL------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp EEEESSBBSSC------CHHHHHTEEEEEEEEEE
T ss_pred HHHhhcchhhh------hHHHHHhcCCCCEEEEE
Confidence 99997766432 23567889999999875
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.2e-11 Score=93.12 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=79.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
..+. +|||++||||.+|+.++..|+.+|+++|.+. ++..+++|+..... .+..+...|+... .......||+
T Consensus 42 ~~~~--~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~---~~~~ii~~d~~~~--l~~~~~~fDl 114 (183)
T d2fpoa1 42 IVDA--QCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA---GNARVVNSNAMSF--LAQKGTPHNI 114 (183)
T ss_dssp HTTC--EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCHHHH--HSSCCCCEEE
T ss_pred cchh--hhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc---cceeeeeeccccc--ccccccccCE
Confidence 3567 9999999999999999999998999999998 68888899887642 2344444443221 1123457999
Q ss_pred EEEcccCCCcccHHHHHHHHHH--hhCCCcEEEEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEA--LVADDGVVLLGYQ 177 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~--~l~pgG~l~i~~~ 177 (232)
|++.+ .|.....+.++..+.+ .|+++|.+++-..
T Consensus 115 If~DP-PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 115 VFVDP-PFRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp EEECC-SSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred EEEcC-ccccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 99854 5666778888888876 5899998887543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.19 E-value=1.3e-11 Score=94.36 Aligned_cols=108 Identities=18% Similarity=0.258 Sum_probs=81.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCCCcc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKPPFD 141 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~fD 141 (232)
..++ +|||++||||.+|+.++..|+.+|+++|.++ ++..+++|++..+ ...++.+...|+..... ......+||
T Consensus 40 ~~~~--~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~--~~~~~~i~~~D~~~~l~~~~~~~~~fD 115 (182)
T d2fhpa1 40 FDGG--MALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK--EPEKFEVRKMDANRALEQFYEEKLQFD 115 (182)
T ss_dssp CSSC--EEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred cCCC--EEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccchhhhhhhcccCCCcc
Confidence 4678 9999999999999999999998999999998 5888888988765 33456777766543221 111234799
Q ss_pred EEEEcccCCCcccHHHHHHHHHH--hhCCCcEEEEEE
Q 026858 142 LVIAADVVYIEESAAQLVRAMEA--LVADDGVVLLGY 176 (232)
Q Consensus 142 ~Ii~~~~~~~~~~~~~~l~~l~~--~l~pgG~l~i~~ 176 (232)
+|++. +.|........+..+.+ +|+++|.+++-.
T Consensus 116 lIflD-PPY~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 116 LVLLD-PPYAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp EEEEC-CCGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred eEEec-hhhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 99974 45666777888888765 589999877643
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.3e-11 Score=101.23 Aligned_cols=110 Identities=5% Similarity=0.003 Sum_probs=76.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC------CCCCCceEEEEeecCCCcccc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK------PVLNKSLKTSVLYWNNQDQIN 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~------~~~~~~i~~~~~d~~~~~~~~ 134 (232)
..++. +|||||||+|.+++.+|+. ++.+++|+|+++. +..+..+..... .....++.+...|+.+... .
T Consensus 149 l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~-~ 225 (328)
T d1nw3a_ 149 MTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEW-R 225 (328)
T ss_dssp CCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHH-H
T ss_pred CCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccc-c
Confidence 44677 9999999999999988875 7768999999984 444444332211 1123457888887755431 1
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
......|+|+++. +.+..+....+.++.+.|||||+++...
T Consensus 226 ~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 226 ERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 0001257888755 4455778889999999999999998754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=8.7e-11 Score=97.26 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=83.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcC--------CCCCCceEEEEeecCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNK--------PVLNKSLKTSVLYWNNQD 131 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~--------~~~~~~i~~~~~d~~~~~ 131 (232)
..++. +|||+|||+|.+++.+|+. ..++|+++|+++ ++..+++|++... .....++.+...|+....
T Consensus 96 i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~ 173 (324)
T d2b25a1 96 INPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT 173 (324)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC
T ss_pred CCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcc
Confidence 45888 9999999999999999986 345999999998 5677777776421 223456777777765432
Q ss_pred ccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh--c-CceEEEe
Q 026858 132 QINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA--E-VFLIEKV 200 (232)
Q Consensus 132 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~--~-~f~~~~~ 200 (232)
. ......||.|++ +... ...++.++.++|||||++++..+.- .-.....+.++ + +|...++
T Consensus 174 ~-~~~~~~fD~V~L-D~p~----P~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~~l~~~~~~f~~i~~ 237 (324)
T d2b25a1 174 E-DIKSLTFDAVAL-DMLN----PHVTLPVFYPHLKHGGVCAVYVVNI--TQVIELLDGIRTCELALSCEKI 237 (324)
T ss_dssp --------EEEEEE-CSSS----TTTTHHHHGGGEEEEEEEEEEESSH--HHHHHHHHHHHHHTCCEEEEEE
T ss_pred c-ccCCCCcceEee-cCcC----HHHHHHHHHHhccCCCEEEEEeCCH--HHHHHHHHHHHHcCCCceeeEE
Confidence 1 112357999987 4332 2347889999999999988765322 22334444443 2 5654443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.4e-10 Score=89.83 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=63.0
Q ss_pred CCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cccCCCCcc
Q 026858 68 RRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INALKPPFD 141 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~~fD 141 (232)
..+|||||||+|.+++.+++. +. +++++|+++ ++..+++|++.|. +..++.+...++..... .....++||
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~~~~-~~~~~Di~~~al~~A~~N~~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATLNGW-YFLATEVDDMCFNYAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred cceEEEeCCCchHHHHHHHHhCCCc-cccceecCHHHHHHHHHHHHHhC--CCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 348999999999999888866 55 999999998 6889999999987 66777777766554321 112245799
Q ss_pred EEEEcccCCC
Q 026858 142 LVIAADVVYI 151 (232)
Q Consensus 142 ~Ii~~~~~~~ 151 (232)
+|+|+++++.
T Consensus 139 ~ivsNPPY~~ 148 (250)
T d2h00a1 139 FCMCNPPFFA 148 (250)
T ss_dssp EEEECCCCC-
T ss_pred EEEecCcccc
Confidence 9999999874
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=8e-11 Score=100.10 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=71.6
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC------CCCCCceEEE-EeecCCCccc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK------PVLNKSLKTS-VLYWNNQDQI 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~------~~~~~~i~~~-~~d~~~~~~~ 133 (232)
..++. +|||||||+|.+++.+|.. ++.+++|+|+++. +..++.+..... ........+. ..+....+..
T Consensus 214 Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~ 291 (406)
T d1u2za_ 214 LKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV 291 (406)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH
T ss_pred CCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccc
Confidence 55778 9999999999999988866 7668999999984 455555443211 0011111111 1111111111
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...-..+|+|+++. +.+..++...+.++.+.|||||+++...
T Consensus 292 d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 292 AELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 11113478888754 4456788999999999999999998754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.13 E-value=1.1e-10 Score=89.09 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=78.6
Q ss_pred CCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLV 143 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~I 143 (232)
.+. +||||.||||.+|+.++..|+.+++++|.+. ++..+++|++..+.. .........++...........+||+|
T Consensus 43 ~~~--~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~-~~~~~~~~~d~~~~l~~~~~~~~fDlI 119 (183)
T d2ifta1 43 HQS--ECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS-SEQAEVINQSSLDFLKQPQNQPHFDVV 119 (183)
T ss_dssp TTC--EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-TTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred ccc--eEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc-ccccccccccccccccccccCCcccEE
Confidence 567 9999999999999999999999999999998 678888888765421 122344443322211111123469999
Q ss_pred EEcccCCCcccHHHHHHHHHH--hhCCCcEEEEEEe
Q 026858 144 IAADVVYIEESAAQLVRAMEA--LVADDGVVLLGYQ 177 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~--~l~pgG~l~i~~~ 177 (232)
++ |+.|.......++..+.. +|+++|.+++-..
T Consensus 120 Fl-DPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 120 FL-DPPFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp EE-CCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred Ee-chhHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 87 556766778888888876 6899998887554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.11 E-value=2.1e-10 Score=89.65 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=74.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
..++. +|||||||||..+..+|+. +. +|+++|.++. ...+++|+...+. .++.+...|...... ..++|
T Consensus 76 l~~g~--~VLeIGsGsGY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~---~nv~~~~gd~~~g~~---~~~pf 146 (215)
T d1jg1a_ 76 LKPGM--NILEVGTGSGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGV---KNVHVILGDGSKGFP---PKAPY 146 (215)
T ss_dssp CCTTC--CEEEECCTTSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCCG---GGCCE
T ss_pred cCccc--eEEEecCCCChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCC---ceeEEEECccccCCc---ccCcc
Confidence 55778 9999999999999988876 64 8999999984 6677777776652 346777776654432 34689
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|.|++...+.... ..+.+.|+|||++++..
T Consensus 147 D~Iiv~~a~~~ip------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 147 DVIIVTAGAPKIP------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred eeEEeecccccCC------HHHHHhcCCCCEEEEEE
Confidence 9999987765322 23567899999998753
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.95 E-value=8.8e-10 Score=86.52 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=69.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh----C---CCcEEEEcchhH-HHHHHHHHHhcCCC--CCCceEEEEeecCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL----G---LADIVLTDISPV-MPALKHNLKRNKPV--LNKSLKTSVLYWNNQDQ 132 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~----~---~~~v~~~D~s~~-~~~~~~n~~~~~~~--~~~~i~~~~~d~~~~~~ 132 (232)
..++. +|||||||||..+..+++. | ..+|+++|.++. +..+++|+...... -..++.+...|......
T Consensus 78 l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 78 LKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP 155 (223)
T ss_dssp CCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred cCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence 44778 9999999999999888765 2 137999999984 55666665432100 01245667666544332
Q ss_pred cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 133 INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 133 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..++||.|++...+.... ..+.+.|+|||++++..
T Consensus 156 ---~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 156 ---PNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPV 190 (223)
T ss_dssp ---GGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred ---cccceeeEEEEeechhch------HHHHHhcCCCcEEEEEE
Confidence 245799999987765322 34678999999998754
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.88 E-value=2.8e-08 Score=78.76 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=71.7
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++. +.-+++..|..++++ ... ...++.+...|+-+.. ...|++++..+
T Consensus 84 ~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~--~~~ri~~~~gd~~~~~------p~~D~~~l~~v 148 (244)
T d1fp1d2 84 TLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAP--PLSGIEHVGGDMFASV------PQGDAMILKAV 148 (244)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCC--CCTTEEEEECCTTTCC------CCEEEEEEESS
T ss_pred EEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccC--CCCCeEEecCCccccc------ccceEEEEehh
Confidence 8999999999999888876 333899999877421 111 3466888888764322 24699999999
Q ss_pred CCCcc--cHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIEE--SAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~~--~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|++. ....+++++++.|+|||++++.+.
T Consensus 149 Lh~~~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 149 CHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 98654 466889999999999999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=2.6e-08 Score=78.43 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=91.5
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
... +|+|||+|.|.+|+.+|.. +..+++.+|.+. -+...+......+ + ..+.+...............++||+
T Consensus 70 ~~~--~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~--L-~n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 70 QVN--TICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ--L-ENTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp GCC--EEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT--C-SSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCC--eEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC--C-CCcEEEeehhhhccccccccccceE
Confidence 345 8999999999999999975 445999999886 2444433333322 1 1234433332211111112457999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEecCCCCCCCCCCCceEEEEEEe
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKVPHEDLHPDYGYEETDVYILRK 221 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (232)
|++-. ...+..+++.+..+++++|.+++.--.......+...+.+. .++.+..+....++.. ....+++++++
T Consensus 145 v~sRA----va~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~--~~~r~lv~i~K 218 (239)
T d1xdza_ 145 VTARA----VARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIE--ESDRNIMVIRK 218 (239)
T ss_dssp EEEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTT--CCEEEEEEEEE
T ss_pred EEEhh----hhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCC--CCCEEEEEEEE
Confidence 99863 35788899999999999998876543332222233333333 3677766655444333 56678888887
Q ss_pred cCc
Q 026858 222 KKK 224 (232)
Q Consensus 222 ~~~ 224 (232)
.+.
T Consensus 219 ~~~ 221 (239)
T d1xdza_ 219 IKN 221 (239)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=1.2e-07 Score=79.04 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=100.9
Q ss_pred chHHHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcC
Q 026858 35 PCSLVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNK 113 (232)
Q Consensus 35 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~ 113 (232)
.....|.+++.+... ..++. +|||+-||+|.+++.+|+... +|+++|.++ ++..+++|++.|+
T Consensus 195 ~~~e~l~~~v~~~~~-------------~~~~~--~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai~~A~~na~~n~ 258 (358)
T d1uwva2 195 GVNQKMVARALEWLD-------------VQPED--RVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALVEKGQQNARLNG 258 (358)
T ss_dssp HHHHHHHHHHHHHHT-------------CCTTC--EEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHhhc-------------cCCCc--eEEEecccccccchhcccccc-EEEeccCcHHHHHHHHHhHHhcc
Confidence 345667777776655 44567 999999999999999998765 999999998 5888999999887
Q ss_pred CCCCCceEEEEeecCCCcc-cccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh
Q 026858 114 PVLNKSLKTSVLYWNNQDQ-INALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA 192 (232)
Q Consensus 114 ~~~~~~i~~~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~ 192 (232)
.. ++.+...+...... .......||+||+.++=.. ....+..+.+. +|.-.+|+++.... .......+.+
T Consensus 259 i~---n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVSCnp~T--laRDl~~l~~ 329 (358)
T d1uwva2 259 LQ---NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVSCNPAT--LARDSEALLK 329 (358)
T ss_dssp CC---SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEESCHHH--HHHHHHHHHH
T ss_pred cc---cceeeecchhhhhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEeCCHHH--HHHHHHHHHH
Confidence 43 46777766554332 1222457999998555433 23467777664 67778888874332 1334445567
Q ss_pred cCceEEEecCCC
Q 026858 193 EVFLIEKVPHED 204 (232)
Q Consensus 193 ~~f~~~~~~~~~ 204 (232)
.+|+++.+.-..
T Consensus 330 ~gy~l~~i~~~D 341 (358)
T d1uwva2 330 AGYTIARLAMLD 341 (358)
T ss_dssp TTCEEEEEEEEC
T ss_pred CCCeEeEEEEEe
Confidence 799998886544
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=5.4e-09 Score=81.65 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=77.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cccCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INALKP 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~~ 138 (232)
..+ +|||||||+|..++.+|.. ..++++.+|.++. ...++.+....+ +..++.+...+...... .....+
T Consensus 59 ~~k--~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag--~~~~i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 59 QAK--KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TCC--EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCHHHHHHHHHHTTCTT
T ss_pred CCC--eEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC--ccceEEEEEeehhhcchhhhhhcccC
Confidence 446 9999999999999999875 2349999999984 667777777766 45667777665433211 112346
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.||+|+... ..+.....++.+.++|+|||.+++-.
T Consensus 135 ~fD~ifiD~---dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 135 TFDVAVVDA---DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp CEEEEEECS---CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CccEEEEeC---CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 799999842 44567778899999999999999853
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.81 E-value=4.5e-08 Score=80.75 Aligned_cols=146 Identities=10% Similarity=-0.035 Sum_probs=91.3
Q ss_pred cEEEeCccccHHHHHHHHh------CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 70 RAIELGAGCGAAGMAFYLL------GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~------~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+|||.+||+|.+.+.+... ...+++|+|+++ +...++.+....... ......+..... ...+||+
T Consensus 120 ~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~----~~~~~~d~~~~~----~~~~fD~ 191 (328)
T d2f8la1 120 SILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK----MTLLHQDGLANL----LVDPVDV 191 (328)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC----CEEEESCTTSCC----CCCCEEE
T ss_pred EEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh----hhhhcccccccc----ccccccc
Confidence 8999999999988777542 122799999998 455666666555422 233333322221 2457999
Q ss_pred EEEcccCCCcc------------------cHHHHHHHHHHhhCCCcEEEEEEeecC--hhHHHHHHHHHhcCceEEEecC
Q 026858 143 VIAADVVYIEE------------------SAAQLVRAMEALVADDGVVLLGYQLRS--PEAHKLFWEMCAEVFLIEKVPH 202 (232)
Q Consensus 143 Ii~~~~~~~~~------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~--~~~~~~~~~~~~~~f~~~~~~~ 202 (232)
|++++++.... ....++..+.+.|+|||++.++.+..- ......+.+.+.+.+.++.+-.
T Consensus 192 vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~ 271 (328)
T d2f8la1 192 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIK 271 (328)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEE
T ss_pred cccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEE
Confidence 99988863211 133468889999999999888775431 1335566776666666665543
Q ss_pred CCCCCCCC--CCceEEEEEEecCc
Q 026858 203 EDLHPDYG--YEETDVYILRKKKK 224 (232)
Q Consensus 203 ~~~~~~~~--~~~~~l~~~~~~~~ 224 (232)
-. ...|. .....++.++++..
T Consensus 272 lp-~~~F~~~~~~t~ilvl~K~~~ 294 (328)
T d2f8la1 272 LP-ETLFKSEQARKSILILEKADV 294 (328)
T ss_dssp CC-GGGSCC-CCCEEEEEEEECCT
T ss_pred CC-ccccCCCCCCeEEEEEECCCC
Confidence 22 12233 23456777777643
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.1e-08 Score=77.41 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=91.4
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
+++ +|+|+|+|.|.+|+.+|.. +-.+++++|.+. -+...+......+ + .++....-+..... ...+||+
T Consensus 65 ~~~--~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~--L-~nv~v~~~R~E~~~----~~~~fD~ 135 (207)
T d1jsxa_ 65 QGE--RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK--L-ENIEPVQSRVEEFP----SEPPFDG 135 (207)
T ss_dssp CSS--EEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT--C-SSEEEEECCTTTSC----CCSCEEE
T ss_pred cCC--ceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC--C-cceeeeccchhhhc----cccccce
Confidence 446 8999999999999999976 334999999986 3555554444433 2 23566655554332 2357999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEecCCCCCCCCCCCceEEEEEEec
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGYEETDVYILRKK 222 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (232)
|++-.+ ..+..+++.+..+++++|.+++.- ..... + -.+.+..+|++..+....++. .+.+.+++.+++.
T Consensus 136 V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~K-G~~~~--e-El~~~~~~~~~~~~~~~~~p~--~~~~R~iv~ikk~ 205 (207)
T d1jsxa_ 136 VISRAF----ASLNDMVSWCHHLPGEQGRFYALK-GQMPE--D-EIALLPEEYQVESVVKLQVPA--LDGERHLVVIKAN 205 (207)
T ss_dssp EECSCS----SSHHHHHHHHTTSEEEEEEEEEEE-SSCCH--H-HHHTSCTTEEEEEEEEEECC----CCEEEEEEEEEC
T ss_pred ehhhhh----cCHHHHHHHHHHhcCCCcEEEEEC-CCCHH--H-HHHhhhcCCEEEEEEEecCCC--CCCcEEEEEEEec
Confidence 987533 567889999999999999987664 33322 2 234445677766554433332 2456677778776
Q ss_pred C
Q 026858 223 K 223 (232)
Q Consensus 223 ~ 223 (232)
+
T Consensus 206 k 206 (207)
T d1jsxa_ 206 K 206 (207)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=6.4e-09 Score=80.98 Aligned_cols=103 Identities=17% Similarity=0.131 Sum_probs=69.1
Q ss_pred cEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c--ccCCCCccEE
Q 026858 70 RAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I--NALKPPFDLV 143 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~--~~~~~~fD~I 143 (232)
+|||+|||+|..++.+|+. ..++++++|.++ ....++.++...+ +..++++...+...... + ....+.||+|
T Consensus 59 ~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g--l~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~i 136 (214)
T d2cl5a1 59 LVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG--LQDKVTILNGASQDLIPQLKKKYDVDTLDMV 136 (214)
T ss_dssp EEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCHHHHGGGHHHHSCCCCEEEE
T ss_pred EEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC--CCccceeeeccccccccchhhccccccccee
Confidence 9999999999999999875 234999999998 4667777777665 45667887766543211 1 1123579999
Q ss_pred EEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 144 IAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 144 i~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+... -+........+....++|+|||.+++-
T Consensus 137 fiD~-~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 137 FLDH-WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EECS-CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eecc-cccccccHHHHHHHhCccCCCcEEEEe
Confidence 9742 111111222355566789999987653
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.66 E-value=9.4e-08 Score=74.79 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=77.3
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c---ccCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I---NALK 137 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~---~~~~ 137 (232)
..+ +|||||+++|..++.+|+. ..++++.+|.++. ...++++....+ +..++.+...+...... + ....
T Consensus 59 ~~k--~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g--~~~~i~~~~g~a~~~L~~l~~~~~~~ 134 (227)
T d1susa1 59 NAK--NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPALPVLDEMIKDEKNH 134 (227)
T ss_dssp TCC--EEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHCGGGT
T ss_pred CCC--cEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--cccceeeeehHHHHHHHHHHhccccC
Confidence 446 9999999999999999865 2349999999984 667777777765 44567777766543221 1 1124
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
++||+|+... +.......++.+.++|+|||.+++-
T Consensus 135 ~~fD~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 135 GSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp TCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred CceeEEEecc---chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 6799999842 3456788899999999999999985
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.60 E-value=2.6e-08 Score=76.15 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=65.2
Q ss_pred CCCcEEEeCccccHHH----HHHHHh------CCCcEEEEcchhH-HHHHHHHHH--------------hc----CCC--
Q 026858 67 TRRRAIELGAGCGAAG----MAFYLL------GLADIVLTDISPV-MPALKHNLK--------------RN----KPV-- 115 (232)
Q Consensus 67 ~~~~VLElGcGtG~~s----~~la~~------~~~~v~~~D~s~~-~~~~~~n~~--------------~~----~~~-- 115 (232)
++++|+++|||||--. +.+... .. +++++|+++. +..++...- .. ...
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~-~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRW-KVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE-EEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCce-EEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 3459999999999843 323222 12 6999999984 444432110 00 000
Q ss_pred --------CCCceEEEEeecCCCcccccCCCCccEEEEcccCC--CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 116 --------LNKSLKTSVLYWNNQDQINALKPPFDLVIAADVVY--IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 116 --------~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+...+.+...+..... ....+.||+|+|.+++. ..+....+++.+++.|+|||.+++..
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQ--YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSS--CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeehHHHHHHHHHHhhhhccccc--cCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 0111233333222221 11236799999999884 45567899999999999999988764
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.55 E-value=2.4e-07 Score=73.26 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=71.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++. +..+++..|..++++ ... ...++.+...|+-... ..+|++++..+
T Consensus 83 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~--~~~rv~~~~gD~f~~~------p~aD~~~l~~v 147 (244)
T d1fp2a2 83 SIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVE-------NLS--GSNNLTYVGGDMFTSI------PNADAVLLKYI 147 (244)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCC--CBTTEEEEECCTTTCC------CCCSEEEEESC
T ss_pred EEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHH-------hCc--ccCceEEEecCcccCC------CCCcEEEEEee
Confidence 8999999999999888876 333999999977432 111 3467888888765432 35799999999
Q ss_pred CCCcc--cHHHHHHHHHHhhCCC---cEEEEEEe
Q 026858 149 VYIEE--SAAQLVRAMEALVADD---GVVLLGYQ 177 (232)
Q Consensus 149 ~~~~~--~~~~~l~~l~~~l~pg---G~l~i~~~ 177 (232)
+|++. ....+++++++.|+|| |++++.+.
T Consensus 148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 98554 4567899999999998 77888753
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.52 E-value=2.3e-06 Score=65.76 Aligned_cols=129 Identities=17% Similarity=0.081 Sum_probs=78.4
Q ss_pred HHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCC
Q 026858 39 VLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVL 116 (232)
Q Consensus 39 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~ 116 (232)
.++++|.+... ...+. +|||.|||+|.+...+... ....++++|+++... .+
T Consensus 6 ~i~~~m~~l~~-------------~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~-----------~~ 59 (223)
T d2ih2a1 6 EVVDFMVSLAE-------------APRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL-----------DL 59 (223)
T ss_dssp HHHHHHHHHCC-------------CCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC-----------CC
T ss_pred HHHHHHHHhcC-------------CCCcC--EEEECCCchHHHHHHHHHhccccceEEeeecCHHHH-----------hh
Confidence 46677777665 44667 9999999999987766543 334799999998210 01
Q ss_pred CCceEEEEeecCCCcccccCCCCccEEEEcccCCCcc-----------------------------cHHHHHHHHHHhhC
Q 026858 117 NKSLKTSVLYWNNQDQINALKPPFDLVIAADVVYIEE-----------------------------SAAQLVRAMEALVA 167 (232)
Q Consensus 117 ~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-----------------------------~~~~~l~~l~~~l~ 167 (232)
.........+..... ....||+|+++++..... ....++....+.|+
T Consensus 60 ~~~~~~~~~~~~~~~----~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk 135 (223)
T d2ih2a1 60 PPWAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK 135 (223)
T ss_dssp CTTEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE
T ss_pred cccceeeeeehhccc----cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcc
Confidence 111233333332222 235799999987753110 13455678888999
Q ss_pred CCcEEEEEEeecC--hhHHHHHHHHHhcCceE
Q 026858 168 DDGVVLLGYQLRS--PEAHKLFWEMCAEVFLI 197 (232)
Q Consensus 168 pgG~l~i~~~~r~--~~~~~~~~~~~~~~f~~ 197 (232)
+||++.++.+..- ....+.+.+.+.+.+.+
T Consensus 136 ~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i 167 (223)
T d2ih2a1 136 PGGVLVFVVPATWLVLEDFALLREFLAREGKT 167 (223)
T ss_dssp EEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEE
T ss_pred cCCceEEEEeeeeccCcchHHHHHHHHhcCCE
Confidence 9999988865331 12244555555544443
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.45 E-value=1e-06 Score=69.52 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=69.7
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
+|||||||+|..+..+++. +..++++.|..+++. .. ....++.+...|+.... ...|+++...+
T Consensus 84 ~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~--~~~~r~~~~~~d~~~~~------P~ad~~~l~~v 148 (243)
T d1kyza2 84 SLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE-------DA--PSYPGVEHVGGDMFVSI------PKADAVFMKWI 148 (243)
T ss_dssp EEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTT-------TC--CCCTTEEEEECCTTTCC------CCCSCEECSSS
T ss_pred EEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhh-------hc--ccCCceEEecccccccC------CCcceEEEEEE
Confidence 8999999999999999877 333999999987421 11 12356788888765432 23577777888
Q ss_pred CCCc--ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 149 VYIE--ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 149 ~~~~--~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
++.. +....+++++++.|+|||++++.+.
T Consensus 149 lh~~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 149 CHDWSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp STTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred eecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 8744 4677889999999999999999753
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=4.2e-07 Score=69.22 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=74.8
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccc--ccCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI--NALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~~ 138 (232)
..++. .+||++||+|..+..++.. +..+++++|.++ ++..+..+.... ..++.+...++.+.... ....+
T Consensus 21 ~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~~~~~~~~~~ 94 (192)
T d1m6ya2 21 PEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLLKTLGIE 94 (192)
T ss_dssp CCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHHHHTTCS
T ss_pred CCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHHHHHHHcCCC
Confidence 34677 9999999999988777765 334999999998 455555544432 34567777766543321 11235
Q ss_pred CccEEEEcccCC---------CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVY---------IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~---------~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
+||.|+....+. ........+....++|+|||++++..
T Consensus 95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 799998754441 22356778888889999999998866
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.27 E-value=3e-06 Score=67.93 Aligned_cols=123 Identities=14% Similarity=0.122 Sum_probs=77.3
Q ss_pred cEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCC-------CCCCceEEEEeecCCCcccccCCCCcc
Q 026858 70 RAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKP-------VLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~-------~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
+||-||+|.|.....+.+.+..+++++|+++. +..+++-...+.. ....++.+...|..... ...++||
T Consensus 75 ~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l---~~~~~yD 151 (276)
T d1mjfa_ 75 RVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI---KNNRGFD 151 (276)
T ss_dssp EEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH---HHCCCEE
T ss_pred eEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH---hccCCCC
Confidence 99999999999888877776669999999995 4444432221110 12345666665543221 1246799
Q ss_pred EEEEcccCCCccc-----HHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCce
Q 026858 142 LVIAADVVYIEES-----AAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 142 ~Ii~~~~~~~~~~-----~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~ 196 (232)
+|++ +....... -..+++.+++.|+|+|.+++-.... .+.......+.+++-|.
T Consensus 152 vIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~ 212 (276)
T d1mjfa_ 152 VIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFD 212 (276)
T ss_dssp EEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCS
T ss_pred EEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCC
Confidence 9996 33332221 2568999999999999988754332 23334445556665564
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.25 E-value=2.7e-06 Score=69.39 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=78.0
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHh-cC-CCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKR-NK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~-~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
+||.||.|.|.+...+.+. +..+++++|+++. ++.+++.... +. ..-..++.....|+..... ....+||+|++
T Consensus 80 ~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~--~~~~~yDvIi~ 157 (312)
T d1uira_ 80 RVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLE--RTEERYDVVII 157 (312)
T ss_dssp EEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHH--HCCCCEEEEEE
T ss_pred eEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhh--hcCCcccEEEE
Confidence 9999999999988887766 4559999999995 5555554422 11 1123456666665543221 23457999996
Q ss_pred cc--cCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeec---ChhHHHHHHHHHhcCce
Q 026858 146 AD--VVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLR---SPEAHKLFWEMCAEVFL 196 (232)
Q Consensus 146 ~~--~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r---~~~~~~~~~~~~~~~f~ 196 (232)
.. +..... --..+++.+++.|+|||.+++-.... .........+.++..|.
T Consensus 158 D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~ 218 (312)
T d1uira_ 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR 218 (312)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred eCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCc
Confidence 32 222111 12568899999999999988743222 21223444556666664
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.18 E-value=1.7e-05 Score=67.26 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=93.0
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh----C----------CCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL----G----------LADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWN 128 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~----~----------~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~ 128 (232)
.++. +|+|-.||+|.+.+.+.+. . ...+.++|+++. ...+..|....+... ........|.-
T Consensus 161 ~~~~--~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~-~~~~i~~~d~l 237 (425)
T d2okca1 161 QMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT-DRSPIVCEDSL 237 (425)
T ss_dssp CTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS-SCCSEEECCTT
T ss_pred cccc--eeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc-ccceeecCchh
Confidence 3456 9999999999988766543 1 125999999984 556666665544211 11122222222
Q ss_pred CCcccccCCCCccEEEEcccCCCcc-----------------cHHHHHHHHHHhhCCCcEEEEEEeec---ChhHHHHHH
Q 026858 129 NQDQINALKPPFDLVIAADVVYIEE-----------------SAAQLVRAMEALVADDGVVLLGYQLR---SPEAHKLFW 188 (232)
Q Consensus 129 ~~~~~~~~~~~fD~Ii~~~~~~~~~-----------------~~~~~l~~l~~~l~pgG~l~i~~~~r---~~~~~~~~~ 188 (232)
... ...+||+|++++++.... .-..++..+.+.|++||++.++.+.. .......+.
T Consensus 238 ~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR 313 (425)
T d2okca1 238 EKE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIR 313 (425)
T ss_dssp TSC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHH
T ss_pred hhh----cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHH
Confidence 111 235799999988883110 12458889999999999988887632 223355677
Q ss_pred HHHhcCceEEEecCCCCCCCCCC--CceEEEEEEecCc
Q 026858 189 EMCAEVFLIEKVPHEDLHPDYGY--EETDVYILRKKKK 224 (232)
Q Consensus 189 ~~~~~~f~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 224 (232)
+.+-+.+.++.+-.-.. ..|.. -...|+.+++.++
T Consensus 314 ~~Ll~~~~i~aIi~LP~-~~F~~t~v~t~Ilil~K~k~ 350 (425)
T d2okca1 314 KRLLQDFNLHTILRLPT-GIFYAQGVKANVLFFSKGQP 350 (425)
T ss_dssp HHHHHHEEEEEEEECCS-SSSSSTTCCEEEEEEEESSC
T ss_pred HHHHHhcchhHhhcCCc-ccccCCCCCeEEEEEECCCC
Confidence 77766666665543221 23332 2356777777654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.16 E-value=3.2e-06 Score=66.21 Aligned_cols=78 Identities=10% Similarity=0.043 Sum_probs=50.2
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..++..+. +++++|+++.+ ...+.+. .. ..++.+...|....+. ......
T Consensus 19 ~~~~d--~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~-~~----~~n~~i~~~D~l~~~~---~~~~~~ 87 (235)
T d1qama_ 19 LNEHD--NIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKL-VD----HDNFQVLNKDILQFKF---PKNQSY 87 (235)
T ss_dssp CCTTC--EEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHT-TT----CCSEEEECCCGGGCCC---CSSCCC
T ss_pred CCCCC--eEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHh-hc----ccchhhhhhhhhhccc---cccccc
Confidence 34677 999999999999999998876 99999999953 3333322 11 2346777766654331 112233
Q ss_pred EEEEcccCCCc
Q 026858 142 LVIAADVVYIE 152 (232)
Q Consensus 142 ~Ii~~~~~~~~ 152 (232)
.|++ +..|+.
T Consensus 88 ~vv~-NLPYnI 97 (235)
T d1qama_ 88 KIFG-NIPYNI 97 (235)
T ss_dssp EEEE-ECCGGG
T ss_pred eeee-eehhhh
Confidence 4554 555543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=6.6e-05 Score=56.02 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=77.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----ccC
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-----NAL 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-----~~~ 136 (232)
.++. +||||||++|..+..++.. ....++++|..++ .. ...+.+...+....... ...
T Consensus 21 k~~~--~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~----i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 21 KPGM--TVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP----IVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CTTC--EEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC----CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCC--eEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc----cCCceEeecccccchhhhhhhhhcc
Confidence 4677 9999999999999888765 4458999998762 11 12346666666553321 112
Q ss_pred CCCccEEEEcccCCCcc-----------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 137 KPPFDLVIAADVVYIEE-----------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~-----------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
..++|+|++........ .....+..+.++|++||.+++=.-. . .....+...+...|+-..+
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~-g-~~~~~l~~~l~~~F~~V~~ 158 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ-G-EGFDEYLREIRSLFTKVKV 158 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES-S-TTHHHHHHHHHHHEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec-C-ccHHHHHHHHHhhcCEEEE
Confidence 45799999854432111 2445566677788999999985532 3 2355677778877864333
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.07 E-value=8.4e-06 Score=63.55 Aligned_cols=102 Identities=11% Similarity=0.031 Sum_probs=63.2
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-----CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCC-C
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-----GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALK-P 138 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-----~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~ 138 (232)
..+ +|||||++.|..++.++.. ..++++++|+++.. .........++.+...|..+........ .
T Consensus 80 KPk--~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~-------~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~ 150 (232)
T d2bm8a1 80 RPR--TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR-------CQIPASDMENITLHQGDCSDLTTFEHLREM 150 (232)
T ss_dssp CCS--EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT-------CCCCGGGCTTEEEEECCSSCSGGGGGGSSS
T ss_pred CCC--EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhh-------hhhhhccccceeeeecccccHHHHHHHHhc
Confidence 345 8999999999877666532 23499999997620 0000112345788888766655443332 3
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
.+|+|+.-+. |.....-.-+ .+.++|++||.+++-+.
T Consensus 151 ~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 151 AHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp CSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred CCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 5898887443 4322222222 35689999999998764
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.01 E-value=5.7e-06 Score=69.07 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=73.1
Q ss_pred CCCCCcEEEeCccccHHHHHHHH-hCCCcEEEEcchh-HHHHHHHHHHhcCCCC------------CCceEEEEeecCCC
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYL-LGLADIVLTDISP-VMPALKHNLKRNKPVL------------NKSLKTSVLYWNNQ 130 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~-~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~------------~~~i~~~~~d~~~~ 130 (232)
.+. +|||..||||.-++..|. .++.+|++.|+|+ +++.+++|++.|+... ...+.....|+...
T Consensus 45 ~~~--~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~ 122 (375)
T d2dula1 45 NPK--IVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 122 (375)
T ss_dssp CCS--EEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCC--EEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh
Confidence 446 999999999999997765 4777999999998 6899999999986321 01122223322111
Q ss_pred cccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 131 DQINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 131 ~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
. ......||+|.. |++. ...+++....+.++.||.+.+..
T Consensus 123 ~--~~~~~~fDvIDi-DPfG---s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 123 M--AERHRYFHFIDL-DPFG---SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp H--HHSTTCEEEEEE-CCSS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred h--HhhcCcCCcccC-CCCC---CcHHHHHHHHHHhccCCEEEEEe
Confidence 1 012346999997 5543 33568888899999999999973
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=5.7e-05 Score=65.65 Aligned_cols=170 Identities=8% Similarity=-0.076 Sum_probs=97.2
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCcccccCCCCCcEEEeCccccHHHHHHHHh----C---------------CCcEEEEcc
Q 026858 38 LVLAKFVERWAPLPNTATNPYSHLLDFHSTRRRAIELGAGCGAAGMAFYLL----G---------------LADIVLTDI 98 (232)
Q Consensus 38 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~VLElGcGtG~~s~~la~~----~---------------~~~v~~~D~ 98 (232)
..++++|..... ..++. +|+|-.||+|.+.+.+.+. . ...+++.|+
T Consensus 150 ~~Iv~~mv~ll~-------------~~~~~--~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~ 214 (524)
T d2ar0a1 150 RPLIKTIIHLLK-------------PQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLEL 214 (524)
T ss_dssp HHHHHHHHHHHC-------------CCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEES
T ss_pred cchhHhhhhccc-------------Cccch--hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhcc
Confidence 345566666554 34556 9999999999987665542 1 125899999
Q ss_pred hh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-cCCCCccEEEEcccCCCcc--------------cHHHHHHHH
Q 026858 99 SP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-ALKPPFDLVIAADVVYIEE--------------SAAQLVRAM 162 (232)
Q Consensus 99 s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~~~--------------~~~~~l~~l 162 (232)
++ +...+..|+........ ..........+..... ....+||+|++++++.... .--.++..+
T Consensus 215 ~~~~~~la~~nl~l~~~~~~-i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~ 293 (524)
T d2ar0a1 215 VPGTRRLALMNCLLHDIEGN-LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHI 293 (524)
T ss_dssp CHHHHHHHHHHHHTTTCCCB-GGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccccc-ccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHH
Confidence 98 45566666655442110 0000001111111111 1235799999998884211 123478999
Q ss_pred HHhhCCCcEEEEEEeec---ChhHHHHHHHHHhcCceEEEecCCCCCCCCCC--CceEEEEEEecCc
Q 026858 163 EALVADDGVVLLGYQLR---SPEAHKLFWEMCAEVFLIEKVPHEDLHPDYGY--EETDVYILRKKKK 224 (232)
Q Consensus 163 ~~~l~pgG~l~i~~~~r---~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 224 (232)
.+.|++||++.++.+.. .......+.+.+-+.+.++.+-.-. ...|.. -...|+.+++.+.
T Consensus 294 l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~aII~LP-~~~F~~t~i~t~Il~l~K~k~ 359 (524)
T d2ar0a1 294 IETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTILRLP-TGIFYAQGVKTNVLFFTKGTV 359 (524)
T ss_dssp HHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEEEEEEEECC-SSCSSSCSCCEEEEEEEEBCS
T ss_pred HHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcCCceEEEECC-CCcCCCCCCCeEEEEEECCCC
Confidence 99999999988886532 1233455666666656666554322 123332 2356777777544
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=1.9e-05 Score=63.62 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=78.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCC-CCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKP-VLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||-||.|.|.+...+.+. +..+++++|+++. ++.+++-...+.. ....++.....|..... ....++||+|++.
T Consensus 92 ~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l--~~~~~~yDvIi~D 169 (295)
T d1inla_ 92 KVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYV--RKFKNEFDVIIID 169 (295)
T ss_dssp EEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHG--GGCSSCEEEEEEE
T ss_pred eEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHH--hcCCCCCCEEEEc
Confidence 9999999999988888776 4558999999994 5555554333211 12345666665543322 1234579999963
Q ss_pred ccCCC---c---ccHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceE
Q 026858 147 DVVYI---E---ESAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLI 197 (232)
Q Consensus 147 ~~~~~---~---~~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~ 197 (232)
+... + ---..+++.+++.|+|+|.+++-.... +........+.+..-|..
T Consensus 170 -~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~ 227 (295)
T d1inla_ 170 -STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPI 227 (295)
T ss_dssp -C----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSE
T ss_pred -CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcce
Confidence 2221 1 113678899999999999988754332 233344555556655643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.95 E-value=2.2e-05 Score=62.73 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=81.2
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||-||.|.|.+...+.+. +..+++++|+++. ++.+++-...+. .....++.....|..... .....+||+|++.
T Consensus 78 ~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l--~~~~~~yDvIi~D 155 (274)
T d1iy9a_ 78 HVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHI--AKSENQYDVIMVD 155 (274)
T ss_dssp EEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHH--HTCCSCEEEEEES
T ss_pred eEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHH--hhcCCCCCEEEEc
Confidence 9999999999999888875 5669999999995 555554433222 112355666665432222 1124579999973
Q ss_pred ccCC---Ccc--cHHHHHHHHHHhhCCCcEEEEEEee--cChhHHHHHHHHHhcCceEE
Q 026858 147 DVVY---IEE--SAAQLVRAMEALVADDGVVLLGYQL--RSPEAHKLFWEMCAEVFLIE 198 (232)
Q Consensus 147 ~~~~---~~~--~~~~~l~~l~~~l~pgG~l~i~~~~--r~~~~~~~~~~~~~~~f~~~ 198 (232)
... ... --..+++.+++.|+|+|.++.-... ..+.......+.+++-|...
T Consensus 156 -~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v 213 (274)
T d1iy9a_ 156 -STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPIT 213 (274)
T ss_dssp -CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred -CCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCce
Confidence 221 111 2467889999999999998875422 23344456666777766443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.6e-05 Score=62.29 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=54.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. .|||||+|+|.++..+++.+. +++++++++. +........... ...++.....|+...+ ...++
T Consensus 19 ~~~~d--~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~--~~~~~~~i~~D~l~~~-----~~~~~ 88 (278)
T d1zq9a1 19 LRPTD--VVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKTD-----LPFFD 88 (278)
T ss_dssp CCTTC--EEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTSC-----CCCCS
T ss_pred CCCCC--EEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhc--cccchhhhHHHHhhhh-----hhhhh
Confidence 34567 999999999999999999886 9999999995 444444433222 2345677777765543 13456
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.||++-+.+
T Consensus 89 ~vV~NLPY~ 97 (278)
T d1zq9a1 89 TCVANLPYQ 97 (278)
T ss_dssp EEEEECCGG
T ss_pred hhhcchHHH
Confidence 777765544
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=0.00011 Score=59.53 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=78.4
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
.++. +|||+.||+|.=+..++.. +.+.+++.|.++ -+..+..+..+.+.. .+.....| ..........|
T Consensus 115 ~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~---~i~~~~~d---~~~~~~~~~~f 186 (313)
T d1ixka_ 115 KPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL---NVILFHSS---SLHIGELNVEF 186 (313)
T ss_dssp CTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC---SEEEESSC---GGGGGGGCCCE
T ss_pred Cccc--eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh---cccccccc---ccccccccccc
Confidence 3677 9999999999987777654 334899999998 477777777766522 22222222 22222345679
Q ss_pred cEEEEcccCCCcc----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhHH-HHHHHHHhc-Cce
Q 026858 141 DLVIAADVVYIEE----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEAH-KLFWEMCAE-VFL 196 (232)
Q Consensus 141 D~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~-~~~~~~~~~-~f~ 196 (232)
|.|++-.+..... .-..++.+..++++|||+++.++-.-.+..- +.....++. +|+
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~ 266 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 266 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCE
Confidence 9999844332111 2345566777788999998887655554332 333333332 455
Q ss_pred EEEe
Q 026858 197 IEKV 200 (232)
Q Consensus 197 ~~~~ 200 (232)
...+
T Consensus 267 ~~~~ 270 (313)
T d1ixka_ 267 LLPL 270 (313)
T ss_dssp EECC
T ss_pred Eeec
Confidence 4433
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=2.5e-05 Score=62.68 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=78.5
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||=||.|.|.+...+.+. +..+++++|+++. ++.+++-...+. .....++.....|..... ....++||+|++
T Consensus 81 ~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l--~~~~~~yDvIi~- 157 (285)
T d2o07a1 81 KVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFM--KQNQDAFDVIIT- 157 (285)
T ss_dssp EEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHH--HTCSSCEEEEEE-
T ss_pred eEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHH--hcCCCCCCEEEE-
Confidence 8999999999998888876 5669999999994 555554332221 112356666666533221 112457999997
Q ss_pred ccCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceEEE
Q 026858 147 DVVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLIEK 199 (232)
Q Consensus 147 ~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~~~ 199 (232)
+...... .-..+++.+++.|+|||.+++-.... .........+.++..|....
T Consensus 158 D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~ 217 (285)
T d2o07a1 158 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVA 217 (285)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEE
T ss_pred cCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeee
Confidence 3332111 12346888999999999998865432 22334445555666565433
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.84 E-value=2e-06 Score=67.76 Aligned_cols=77 Identities=8% Similarity=-0.021 Sum_probs=49.0
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
..++. +|||||||+|.++..+++.+. +++++|+++.+ ...+. ... ...++.+...|+.+.+ .....++
T Consensus 27 ~~~~d--~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~----~~~-~~~n~~ii~~D~l~~~---~~~~~~~ 95 (245)
T d1yuba_ 27 LKETD--TVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSE----KLK-LNTRVTLIHQDILQFQ---FPNKQRY 95 (245)
T ss_dssp CCSSE--EEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSC----TTT-TCSEEEECCSCCTTTT---CCCSSEE
T ss_pred CCCCC--eEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhh----hhh-hccchhhhhhhhhccc---cccceee
Confidence 34667 999999999999999999876 99999999832 22211 111 1234566666655433 1223456
Q ss_pred EEEEcccCC
Q 026858 142 LVIAADVVY 150 (232)
Q Consensus 142 ~Ii~~~~~~ 150 (232)
.|+++-+.+
T Consensus 96 ~vv~NLPY~ 104 (245)
T d1yuba_ 96 KIVGNIPYH 104 (245)
T ss_dssp EEEEECCSS
T ss_pred eEeeeeehh
Confidence 666655544
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=8.4e-05 Score=59.50 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=77.7
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh-CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccE
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL-GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDL 142 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~ 142 (232)
++. +|||+.+|+|.=+..++.. ..+.+++.|.++ -+..+..++++.+... +.....+. ... .....+.||.
T Consensus 102 ~g~--~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~---~~~~~~~~-~~~-~~~~~~~fd~ 174 (284)
T d1sqga2 102 NGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA---TVKQGDGR-YPS-QWCGEQQFDR 174 (284)
T ss_dssp TTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC---EEEECCTT-CTH-HHHTTCCEEE
T ss_pred ccc--eeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc---eeeecccc-ccc-hhcccccccE
Confidence 667 9999999999988777765 335899999998 4788888887776321 22222111 111 1112357999
Q ss_pred EEEcccCCCcc----------------------cHHHHHHHHHHhhCCCcEEEEEEeecChhH-HHHHHHHHhc--CceE
Q 026858 143 VIAADVVYIEE----------------------SAAQLVRAMEALVADDGVVLLGYQLRSPEA-HKLFWEMCAE--VFLI 197 (232)
Q Consensus 143 Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~-~~~~~~~~~~--~f~~ 197 (232)
|++-.+..... .-..++....++++|||+++.++-.-++.. ++.....+++ +|+.
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL 254 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcEE
Confidence 99844432111 134456666777899999999876555433 3333334443 4544
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.82 E-value=3e-05 Score=62.87 Aligned_cols=125 Identities=13% Similarity=0.080 Sum_probs=75.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCC-CCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKP-VLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~-~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||-||.|.|.+...+.+. +..+++++|+++. +..+++-...+.. ...+++.....|..... .....+||+|++
T Consensus 109 ~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l--~~~~~~yDvII~- 185 (312)
T d2b2ca1 109 RVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFL--KNHKNEFDVIIT- 185 (312)
T ss_dssp EEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHH--HHCTTCEEEEEE-
T ss_pred eEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHH--HhCCCCCCEEEE-
Confidence 8999999999999888876 4569999999995 5555543332221 11345555554432211 123457999997
Q ss_pred ccCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCceE
Q 026858 147 DVVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVFLI 197 (232)
Q Consensus 147 ~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f~~ 197 (232)
+...... --..+++.+++.|+|||.++.-.... .........+.+++.|..
T Consensus 186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~ 243 (312)
T d2b2ca1 186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA 243 (312)
T ss_dssp CCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSE
T ss_pred cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccce
Confidence 3322111 23556889999999999998854222 223344555556655643
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00029 Score=56.51 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=54.8
Q ss_pred CCCCCcEEEeCccccHHHHHHHHh--CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCcc
Q 026858 65 HSTRRRAIELGAGCGAAGMAFYLL--GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~~s~~la~~--~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
++. +|||+.||+|.-+..+|.. +..+++++|+++. +..++.|+.+.+.. .+.+...|...........+.||
T Consensus 94 ~g~--~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~---~~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 94 PGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS---CCELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp TTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC---SEEEEECCGGGSCTTCGGGTTEE
T ss_pred ccc--eEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc---ceeeeehhhhhhcccccccceee
Confidence 667 9999999999977777654 4458999999984 77888888877632 35555555443322212235799
Q ss_pred EEEEccc
Q 026858 142 LVIAADV 148 (232)
Q Consensus 142 ~Ii~~~~ 148 (232)
.|++..+
T Consensus 169 ~VL~DaP 175 (293)
T d2b9ea1 169 YILLDPS 175 (293)
T ss_dssp EEEECCC
T ss_pred EEeecCc
Confidence 9998544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=8.4e-05 Score=59.65 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=77.4
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcC-CCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNK-PVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+||=||.|.|.+...+.+. +..+++++|+++. ++.+++-...+. .....++.....|...... ....++||+|++
T Consensus 83 ~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~-~~~~~~yDvIi~- 160 (290)
T d1xj5a_ 83 KVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLK-NAAEGSYDAVIV- 160 (290)
T ss_dssp EEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHH-TSCTTCEEEEEE-
T ss_pred ceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHh-hccccCccEEEE-
Confidence 9999999999999888776 5568999999995 555555332211 1123556666554322211 112357999997
Q ss_pred ccCCCcc-----cHHHHHHHHHHhhCCCcEEEEEEeec--ChhHHHHHHHHHhcCc
Q 026858 147 DVVYIEE-----SAAQLVRAMEALVADDGVVLLGYQLR--SPEAHKLFWEMCAEVF 195 (232)
Q Consensus 147 ~~~~~~~-----~~~~~l~~l~~~l~pgG~l~i~~~~r--~~~~~~~~~~~~~~~f 195 (232)
|+..... --..+++.+++.|+|||.+++-.... +........+.+.+-|
T Consensus 161 D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF 216 (290)
T d1xj5a_ 161 DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF 216 (290)
T ss_dssp CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence 3332111 13568899999999999999865433 2333344555555544
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00013 Score=57.34 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=42.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhHH-HHHHHHHHhcCCCCCCceEEEEeecCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPVM-PALKHNLKRNKPVLNKSLKTSVLYWNNQ 130 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~-~~~~~n~~~~~~~~~~~i~~~~~d~~~~ 130 (232)
..++. .|||||||+|.++..++..+. +++++|+++.+ ...+. .. ....++.....|....
T Consensus 19 ~~~~d--~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~----~~-~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 19 PQKGQ--AMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQT----HP-FLGPKLTIYQQDAMTF 79 (252)
T ss_dssp CCTTC--CEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHT----CT-TTGGGEEEECSCGGGC
T ss_pred CCCCC--EEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHH----Hh-hhccchhHHhhhhhhh
Confidence 34667 999999999999999998876 99999999943 33322 11 1123466676665543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.93 E-value=0.0015 Score=48.51 Aligned_cols=105 Identities=10% Similarity=-0.014 Sum_probs=69.5
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc--ccCCCC
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI--NALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~--~~~~~~ 139 (232)
..++. .++|..+|.|..+..+...+. +|+++|.++. +..+.. . ...++.+....+...... ....+.
T Consensus 16 ~~~g~--~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~---~----~~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 16 VRPGG--VYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKG---L----HLPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp CCTTC--EEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHH---T----CCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred CCCCC--EEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhh---c----cccceeEeehHHHHHHHHHHHcCCCc
Confidence 34777 999999999988877777665 9999999994 333222 1 123456666665554321 112356
Q ss_pred ccEEEEcccCCCc---------ccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIE---------ESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|.|+..-.+... ......+......+++||++.+...
T Consensus 86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 9999975433211 2345577888889999999998764
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.87 E-value=0.00093 Score=52.07 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=57.4
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchhHH-HHHHHHHHhcC---CC---CCCceEEEEeecCCCcccccCCCCcc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPVM-PALKHNLKRNK---PV---LNKSLKTSVLYWNNQDQINALKPPFD 141 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~-~~~~~n~~~~~---~~---~~~~i~~~~~d~~~~~~~~~~~~~fD 141 (232)
.+|||.-||.|.-++.+|..|+ +|++++.++.+ .....++.+.. .. ...++++...|..... ......||
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L--~~~~~~~D 166 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL--TDITPRPQ 166 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS--TTCSSCCS
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHH--hccCCCCC
Confidence 3899999999999999999998 99999999853 34444433221 11 1235666665532211 12245799
Q ss_pred EEEEcccCCCcc----cHHHHHHHHHHhhC
Q 026858 142 LVIAADVVYIEE----SAAQLVRAMEALVA 167 (232)
Q Consensus 142 ~Ii~~~~~~~~~----~~~~~l~~l~~~l~ 167 (232)
+|+. |+.|... ....-++.++.+..
T Consensus 167 vIYl-DPMFp~~~Ksa~~kk~m~~l~~l~~ 195 (250)
T d2oyra1 167 VVYL-DPMFPHKQKSALVKKEMRVFQSLVG 195 (250)
T ss_dssp EEEE-CCCCCCCCC-----HHHHHHHHHSC
T ss_pred EEEE-CCCCccccccccchhHHHHHHhhcc
Confidence 9997 5555322 23344444555443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.85 E-value=0.0017 Score=47.61 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=58.7
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 135 (232)
..++. +||=+|||. |+.++.+++. |+.+|+++|.++. .+.++ ..+.. .+ .+....... ..
T Consensus 25 ~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~----~lGa~-----~~--i~~~~~~~~~~v~~~ 91 (174)
T d1jqba2 25 IEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK----FYGAT-----DI--LNYKNGHIEDQVMKL 91 (174)
T ss_dssp CCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH----HHTCS-----EE--ECGGGSCHHHHHHHH
T ss_pred CCCCC--EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH----hhCcc-----cc--ccccchhHHHHHHHH
Confidence 45778 899999998 8888888876 7778999999883 22222 22211 11 122221110 11
Q ss_pred CC-CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 LK-PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 ~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.. ..+|+|+-+-. . +..++...++++|+|++++..
T Consensus 92 t~g~G~D~vid~~g--~----~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 92 TNGKGVDRVIMAGG--G----SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTTSCEEEEEECSS--C----TTHHHHHHHHEEEEEEEEECC
T ss_pred hhccCcceEEEccC--C----HHHHHHHHHHHhcCCEEEEEe
Confidence 12 35999885422 2 235666778999999999864
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0058 Score=44.28 Aligned_cols=120 Identities=16% Similarity=0.076 Sum_probs=68.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-----NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-----~~ 135 (232)
..++. +||=+|||+ |..+..+++. |+.+|+++|.++. ....+++.+.. .....+-.+.... ..
T Consensus 24 ~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~---rl~~a~~~Ga~-----~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 24 VTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT---RLSKAKEIGAD-----LVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH---HHHHHHHTTCS-----EEEECSSCCHHHHHHHHHHH
T ss_pred CCCCC--EEEEECCCccHHHHHHHHHHcCCceEEeccCCHH---HHHHHHHhCCc-----cccccccccccccccccccc
Confidence 34777 899999998 7777777665 8778999999983 22222222211 1111111111100 01
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEE
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEK 199 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~ 199 (232)
....+|+|+-+- .-+..++...+++++||++++......+. .-.+.....++.++.-
T Consensus 94 ~g~g~Dvvid~~------G~~~~~~~a~~~~~~gG~iv~~G~~~~~~-~~~~~~~~~k~l~i~G 150 (171)
T d1pl8a2 94 LGCKPEVTIECT------GAEASIQAGIYATRSGGTLVLVGLGSEMT-TVPLLHAAIREVDIKG 150 (171)
T ss_dssp HTSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCCCSCC-CCCHHHHHHTTCEEEE
T ss_pred CCCCceEEEecc------CCchhHHHHHHHhcCCCEEEEEecCCCCC-ccCHHHHHHCCcEEEE
Confidence 234689998642 22457888899999999999875433211 1123344444555543
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.78 E-value=0.0053 Score=47.42 Aligned_cols=123 Identities=7% Similarity=-0.064 Sum_probs=61.9
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhC-CCcEEEEcchhHHHHHHHHHHhcCCCCCCc-eEEEEeecCCCcccccCCCCc
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLG-LADIVLTDISPVMPALKHNLKRNKPVLNKS-LKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~-~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~f 140 (232)
..+.. +|+|||||+|..+..++... ...+.+.|+--.. ... ......+... +.+... . .......+..
T Consensus 64 ~~~~~--~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~---~e~-P~~~~~~~~ni~~~~~~---~-dv~~l~~~~~ 133 (257)
T d2p41a1 64 VTPEG--KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG---HEE-PIPMSTYGWNLVRLQSG---V-DVFFIPPERC 133 (257)
T ss_dssp SCCCE--EEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT---SCC-CCCCCSTTGGGEEEECS---C-CTTTSCCCCC
T ss_pred ccCCC--eEEEecCCCChHHHHHHhhcCCCceeEEEecCcc---ccC-Cccccccccccccchhh---h-hHHhcCCCcC
Confidence 45667 89999999999999998763 2267777763200 000 0000011111 111111 0 0011124579
Q ss_pred cEEEEcccCCCcc------cHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc
Q 026858 141 DLVIAADVVYIEE------SAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF 195 (232)
Q Consensus 141 D~Ii~~~~~~~~~------~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f 195 (232)
|+|+|.-...... -.-.+++.+.+.|+|||.+++=-...+.......++.++..|
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~f 194 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKH 194 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHh
Confidence 9999743221111 122456677788999998766322222222333344444444
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.75 E-value=0.0069 Score=43.68 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=59.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc------
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI------ 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~------ 133 (232)
..++. +||=+|||+ |+.+..+++. |+ +++++|.++. ++.+++ .+.. ..+ ..+-......
T Consensus 24 ~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~----~ga~----~~~-~~~~~~~~~~~~~~~~ 91 (170)
T d1e3ja2 24 VQLGT--TVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD----VTL-VVDPAKEEESSIIERI 91 (170)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS----EEE-ECCTTTSCHHHHHHHH
T ss_pred CCCCC--EEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHH----cCCc----EEE-eccccccccchhhhhh
Confidence 34777 899999997 7777777766 77 9999999883 222222 2211 111 1111111100
Q ss_pred -ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 134 -NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 134 -~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
......+|+|+-+. .-+..+....++++++|++++....
T Consensus 92 ~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 92 RSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp HHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred hcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEecC
Confidence 01124689998532 1245677788999999999987543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.67 E-value=0.0014 Score=47.64 Aligned_cols=96 Identities=11% Similarity=0.027 Sum_probs=58.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-cccCCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-INALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~ 138 (232)
..++. +||-+|+|+ |+.+..+++. |+ +++++|.++. ++.+++ .+.+ .+. +...... .....+
T Consensus 25 ~~~g~--~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~----lGa~-----~~i--~~~~~~~~~~~~~~ 90 (168)
T d1piwa2 25 CGPGK--KVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK----MGAD-----HYI--ATLEEGDWGEKYFD 90 (168)
T ss_dssp CSTTC--EEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH----HTCS-----EEE--EGGGTSCHHHHSCS
T ss_pred cCCCC--EEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhc----cCCc-----EEe--eccchHHHHHhhhc
Confidence 45788 999999996 8887777765 88 8999999874 433332 2211 111 2111111 122345
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+.......... +....++++++|++++..
T Consensus 91 ~~d~vi~~~~~~~~~~----~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 91 TFDLIVVCASSLTDID----FNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp CEEEEEECCSCSTTCC----TTTGGGGEEEEEEEEECC
T ss_pred ccceEEEEecCCccch----HHHHHHHhhccceEEEec
Confidence 7999986433222111 334577899999998864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.55 E-value=0.0027 Score=46.61 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=58.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-------
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ------- 132 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~------- 132 (232)
..++. +||=+|||+ |...+.+|+. |+.+|+++|.++. ++.++ +.+.. .. ++..+...
T Consensus 26 ~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~----~lGa~-----~v--i~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 26 SFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE----EIGAD-----LT--LNRRETSVEERRKAI 92 (182)
T ss_dssp CCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH----HTTCS-----EE--EETTTSCHHHHHHHH
T ss_pred CCCCC--EEEEECCCccchhheecccccccccccccccccccccccc----cccce-----EE--EeccccchHHHHHHH
Confidence 34788 999999997 8777777766 7768999999883 32222 22211 11 12222110
Q ss_pred cccC-CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 133 INAL-KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 133 ~~~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+.. ...+|+|+-+ ... +..++...+++++||++++..
T Consensus 93 ~~~~~~~g~Dvvid~--vG~----~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 93 MDITHGRGADFILEA--TGD----SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HHHTTTSCEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEECC
T ss_pred HHhhCCCCceEEeec--CCc----hhHHHHHHHHhcCCCEEEEEe
Confidence 0001 2359999853 222 235677789999999988763
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.49 E-value=0.056 Score=42.37 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=48.4
Q ss_pred CcEEEeCccccHHHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEccc
Q 026858 69 RRAIELGAGCGAAGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAADV 148 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~ 148 (232)
++||||.||.|.+++.+.+.|+..+.++|+++ .+.+..+.|.+. .....|+...... .....|+++++.+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~---~a~~~~~~N~~~-----~~~~~Di~~~~~~--~~~~~dll~~g~P 70 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDK---SIWKTYESNHSA-----KLIKGDISKISSD--EFPKCDGIIGGPP 70 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCH---HHHHHHHHHCCS-----EEEESCTTTSCGG--GSCCCSEEEECCC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCH---HHHHHHHHHCCC-----CCccCChhhCCHh--HcccccEEeeccc
Confidence 37999999999999888888986677999998 333333444322 3344555544321 1246899998776
Q ss_pred CC
Q 026858 149 VY 150 (232)
Q Consensus 149 ~~ 150 (232)
..
T Consensus 71 Cq 72 (324)
T d1dcta_ 71 CQ 72 (324)
T ss_dssp CT
T ss_pred cc
Confidence 63
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.45 E-value=0.0082 Score=43.65 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=59.6
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 135 (232)
..++. +||=+|||. |.++..+++. |+..++.+|.++. ++.+++ .+.. .+ ++....+.. ..
T Consensus 26 ~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga~-----~~--i~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 26 VTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT-----HV--INSKTQDPVAAIKEI 92 (174)
T ss_dssp CCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS-----EE--EETTTSCHHHHHHHH
T ss_pred CCCCC--EEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCCe-----EE--EeCCCcCHHHHHHHH
Confidence 44778 899999987 7777777655 8878888998873 222222 2211 11 222222111 11
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+.+|+|+-+- ..+..++...++++|+|++++..
T Consensus 93 t~gg~D~vid~~------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 93 TDGGVNFALEST------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp TTSCEEEEEECS------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCCCcEEEEcC------CcHHHHHHHHhcccCceEEEEEe
Confidence 235799998542 22457788899999999998864
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.28 E-value=0.016 Score=42.23 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=61.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc-c-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ-I----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~-~----- 133 (232)
..++. +||=+|||+ |+.++.+++. |+.+|+.+|.++. ++.++ +.+.. .. .+....+. .
T Consensus 26 v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~----~~Ga~-----~~--i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 26 VTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK----ALGAT-----DC--LNPRELDKPVQDVIT 92 (174)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCS-----EE--ECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH----HhCCC-----cc--cCCccchhhhhhhHh
Confidence 45778 999999999 9988888876 8878999999983 22222 22211 11 11111110 0
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEEe
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGYQ 177 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~~ 177 (232)
....+.+|+++-+- ..+..+....+.++++ |++++...
T Consensus 93 ~~~~~G~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 93 ELTAGGVDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HHHTSCBSEEEESS------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hhhcCCCcEEEEec------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 01134699998542 2355788888999996 99988753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0077 Score=43.46 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=57.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPP 139 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 139 (232)
..++. +||=+|||+ |++.+.+++. |+ +++.+|.++. .+.+++ .+.+ .+ .+...........+.
T Consensus 28 ~~~G~--~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~----lGad-----~~--i~~~~~~~~~~~~~~ 93 (168)
T d1uufa2 28 AGPGK--KVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA----LGAD-----EV--VNSRNADEMAAHLKS 93 (168)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH----HTCS-----EE--EETTCHHHHHTTTTC
T ss_pred CCCCC--EEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhc----cCCc-----EE--EECchhhHHHHhcCC
Confidence 45788 899999987 8788777775 87 7778887763 332222 2211 11 222222211222346
Q ss_pred ccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 140 FDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 140 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+|+++-.- ..... +....++++++|++++...
T Consensus 94 ~D~vid~~--g~~~~----~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 94 FDFILNTV--AAPHN----LDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EEEEEECC--SSCCC----HHHHHTTEEEEEEEEECCC
T ss_pred Cceeeeee--ecchh----HHHHHHHHhcCCEEEEecc
Confidence 99988542 22222 4456679999999998753
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.02 Score=45.65 Aligned_cols=125 Identities=13% Similarity=0.087 Sum_probs=64.7
Q ss_pred CCcEEEeCccccHHHHHHHHhCCC--cEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLA--DIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~--~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
|++|+||.||.|.+++.+...|.. -+.++|+++ .+......|.+.. .....|+.+...........|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~---~a~~~~~~n~~~~----~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNT---VANEVYKYNFPHT----QLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCH---HHHHHHHHHCTTS----CEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCH---HHHHHHHHHCCCC----CcccCchhhCCHhHcCCCCccEEEe
Confidence 458999999999988877776752 366889998 3333333343221 2222233222211111136899998
Q ss_pred cccCCCc----------ccHHHHHHHHHHhhCC---CcEEEEEEeecCh---hHHHHHHHHHhc-CceEEE
Q 026858 146 ADVVYIE----------ESAAQLVRAMEALVAD---DGVVLLGYQLRSP---EAHKLFWEMCAE-VFLIEK 199 (232)
Q Consensus 146 ~~~~~~~----------~~~~~~l~~l~~~l~p---gG~l~i~~~~r~~---~~~~~~~~~~~~-~f~~~~ 199 (232)
+.+.... +....++....++++. .-.+++....... ...+.+.+.+.+ +|.+..
T Consensus 75 gpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~ 145 (343)
T d1g55a_ 75 SPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQE 145 (343)
T ss_dssp CCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEE
T ss_pred ecccccccccccccccccccccccchhhhhHhhhcCCCceeeeeccCCcccchhhHHHHhhhhccccccce
Confidence 7776321 1233455555555431 1346666554432 234555555554 776644
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.07 E-value=0.023 Score=42.03 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=61.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccc----cc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~ 135 (232)
..++. +||-+|||+ |+.+..+++. ++.+|+++|.++. ++.++ ..+. .. ..+-...... ..
T Consensus 23 v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~----~~Ga------~~-~~~~~~~~~~~~i~~~ 89 (195)
T d1kola2 23 VGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK----AQGF------EI-ADLSLDTPLHEQIAAL 89 (195)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH----HTTC------EE-EETTSSSCHHHHHHHH
T ss_pred CCCCC--EEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh----hccc------cE-EEeCCCcCHHHHHHHH
Confidence 45788 999999998 7777777755 7779999999883 22222 2221 11 1111111100 00
Q ss_pred -CCCCccEEEEcccCC---------CcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 -LKPPFDLVIAADVVY---------IEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 -~~~~fD~Ii~~~~~~---------~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
....+|+++-+-... ........++...++++|+|++.+..
T Consensus 90 t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 90 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred hCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 123589988532211 11234568899999999999999863
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.06 E-value=0.0035 Score=45.20 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=54.8
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---cCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---ALK 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~ 137 (232)
..++. +||=+|||+ |+++..+++. |+ +++++|.++. ..+..+..+.. .+ .+.......+ ...
T Consensus 25 ~~~g~--~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~---~~~~a~~~Ga~-----~~--i~~~~~~~~~~~~~~~ 91 (166)
T d1llua2 25 ARPGQ--WVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDA---KLELARKLGAS-----LT--VNARQEDPVEAIQRDI 91 (166)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHH---HHHHHHHTTCS-----EE--EETTTSCHHHHHHHHH
T ss_pred CCCCC--EEEEeeccccHHHHHHHHHHcCC-ccceecchhh---HHHhhhccCcc-----cc--ccccchhHHHHHHHhh
Confidence 34777 899999998 8887777766 76 9999999873 22222222211 11 1222221111 011
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|.++.... -...+....++++++|++++..
T Consensus 92 ~g~~~~i~~~~------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 92 GGAHGVLVTAV------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp SSEEEEEECCS------CHHHHHHHHTTEEEEEEEEECC
T ss_pred cCCcccccccc------cchHHHHHHHHhcCCcEEEEEE
Confidence 23444443211 1346777889999999998864
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0064 Score=44.15 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----c
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----~ 135 (232)
..++. +||=.|+ |+ |..++.+|+. |+ ++++++.++. ..+.++..+.. . ..+..+....+ .
T Consensus 26 ~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~---~~~~~~~~Ga~-----~--vi~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 26 VKAGE--SVLVHGASGGVGLAACQIARAYGL-KILGTAGTEE---GQKIVLQNGAH-----E--VFNHREVNYIDKIKKY 92 (174)
T ss_dssp CCTTC--EEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHH---HHHHHHHTTCS-----E--EEETTSTTHHHHHHHH
T ss_pred CCCCC--EEEEEeccccccccccccccccCc-cccccccccc---ccccccccCcc-----c--ccccccccHHHHhhhh
Confidence 34778 9999996 43 7788888776 88 8998887762 12222223321 1 12322222111 1
Q ss_pred -CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 136 -LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 136 -~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
....+|+|+.+. -...++...++++|+|+++..
T Consensus 93 t~~~g~d~v~d~~-------g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 93 VGEKGIDIIIEML-------ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HCTTCEEEEEESC-------HHHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCceEEeecc-------cHHHHHHHHhccCCCCEEEEE
Confidence 134699999642 134677888999999999986
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.65 E-value=0.0072 Score=43.38 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=55.5
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc---cccCC
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INALK 137 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~ 137 (232)
..++. +||=.|||+ |...+.+++. |+ +++++|.++. .....+..+.. ...+..+.+. .....
T Consensus 25 ~~~g~--~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~---r~~~~k~~Ga~-------~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 25 AKPGE--WVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDE---KLELAKELGAD-------LVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp CCTTC--EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHH---HHHHHHHTTCS-------EEECTTTSCHHHHHHHHH
T ss_pred CCCCC--EEEEeecccchhhhhHHHhcCCC-eEeccCCCHH---HhhhhhhcCcc-------eecccccchhhhhccccc
Confidence 44778 899999998 7777777766 67 8999998873 22222333311 1122222211 01111
Q ss_pred CCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 138 PPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 138 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
..+|.++... . -...+....++++|+|++++..
T Consensus 92 ~~~~~~v~~~-~-----~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTA-V-----SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESS-C-----CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeec-C-----CHHHHHHHHHHhccCCceEecc
Confidence 2344444321 1 2456788899999999999863
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.057 Score=41.55 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=58.1
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
.+.++ .+|=-|++.|+ ++..+++.|+ +|+++|.++ .++.+.+.+.... ...++.+...|+.+.+...
T Consensus 7 ~lk~K--v~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~v~ 81 (257)
T d1xg5a_ 7 RWRDR--LALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFS 81 (257)
T ss_dssp GGTTC--EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEEEccCCCHHHHHHHHH
Confidence 57889 99999999876 4456667798 999999987 3666666555443 2345677788888765321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
...++.|++|.+....
T Consensus 82 ~~~~~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 82 AIRSQHSGVDICINNAGLA 100 (257)
T ss_dssp HHHHHHCCCSEEEECCCCC
T ss_pred HHHHhcCCCCEEEeccccc
Confidence 1236799999766553
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.58 E-value=0.0026 Score=46.10 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=56.1
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
..++. +||=+|| |. |.+++.+++. ++.+|+.+|.++. ++.+++ .+.. .. .+....+...
T Consensus 25 ~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~-----~~--i~~~~~~~~~~~~~ 91 (170)
T d1jvba2 25 LDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD-----YV--INASMQDPLAEIRR 91 (170)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS-----EE--EETTTSCHHHHHHH
T ss_pred CCCCC--EEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc-----ee--eccCCcCHHHHHHH
Confidence 45777 9999997 43 6666665554 7669999999873 222222 2211 11 1222211100
Q ss_pred -cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 -ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 -~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+.||+|+-+. .-+..++...++++|+|++++..
T Consensus 92 ~~~~~~~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 92 ITESKGVDAVIDLN------NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp HTTTSCEEEEEESC------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred Hhhcccchhhhccc------ccchHHHhhhhhcccCCEEEEec
Confidence 1134699998642 22445667788999999998863
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.96 E-value=0.16 Score=36.42 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=55.5
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCc---c-ccc
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQD---Q-INA 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~---~-~~~ 135 (232)
..++. +||=+|||. |+.++.+++. |+.+|+++|.++. ++.+++ .+.. ......-.+.. . ...
T Consensus 25 ~~~G~--~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~-----~~i~~~~~d~~~~~~~~~~ 93 (174)
T d1p0fa2 25 VTPGS--TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT-----ECLNPKDYDKPIYEVICEK 93 (174)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS-----EEECGGGCSSCHHHHHHHH
T ss_pred CCCCC--EEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc-----EEEcCCCchhHHHHHHHHh
Confidence 45788 999999998 7777777665 8779999999883 333322 2211 11111111100 0 001
Q ss_pred CCCCccEEEEcccCCCcccHHHHHHHHHHhh-CCCcEEEEEE
Q 026858 136 LKPPFDLVIAADVVYIEESAAQLVRAMEALV-ADDGVVLLGY 176 (232)
Q Consensus 136 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l-~pgG~l~i~~ 176 (232)
..+.+|+|+-.- .....+......+ +++|++++..
T Consensus 94 ~~~G~d~vid~~------g~~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 94 TNGGVDYAVECA------GRIETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp TTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred cCCCCcEEEEcC------CCchHHHHHHHHHHHhcCceEEEE
Confidence 124699998532 1234555556555 5568988764
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.96 E-value=0.079 Score=38.26 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=30.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
..++. +|+=+|||. |+.++.+++. |+.+|+++|.++.
T Consensus 27 ~~~g~--tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 27 VKPGS--TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCCC--EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence 44778 999999998 7777777665 7679999999884
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.80 E-value=0.012 Score=42.71 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=57.0
Q ss_pred CcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEE
Q 026858 69 RRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIA 145 (232)
Q Consensus 69 ~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~ 145 (232)
.+|+=||+|. |..+...|+. |+ .|+..|.++. ++........+ +..... +.......-...|+||.
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~-------~~~~~~---~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSR-------VELLYS---NSAEIETAVAEADLLIG 101 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGG-------SEEEEC---CHHHHHHHHHTCSEEEE
T ss_pred cEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhccc-------ceeehh---hhhhHHHhhccCcEEEE
Confidence 3999999998 7777666654 88 9999999983 44444332222 122211 11111112236899998
Q ss_pred cccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 146 ADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 146 ~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
.-.+-......-.-+++.+.||||..++
T Consensus 102 aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 102 AVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred eeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 6554433333334477888899988766
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.55 E-value=0.019 Score=41.45 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=57.3
Q ss_pred cCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcc---ccc-C
Q 026858 64 FHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ---INA-L 136 (232)
Q Consensus 64 ~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~---~~~-~ 136 (232)
.++. +||=+|+|+ |..++.+++. |+.+++++|.++. +..++ ..+.. .+ .+...... ... .
T Consensus 31 ~~g~--~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~----~~ga~-----~~--i~~~~~~~~~~~~~~~ 97 (172)
T d1h2ba2 31 YPGA--YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE----RLGAD-----HV--VDARRDPVKQVMELTR 97 (172)
T ss_dssp CTTC--EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH----HTTCS-----EE--EETTSCHHHHHHHHTT
T ss_pred CCCC--EEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh----hcccc-----ee--ecCcccHHHHHHHhhC
Confidence 4678 899999998 7777777654 7779999999873 22222 22211 11 12222110 011 1
Q ss_pred CCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
...+|+|+-+- .-...++...+.++++|+++++.
T Consensus 98 ~~g~d~vid~~------g~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 98 GRGVNVAMDFV------GSQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp TCCEEEEEESS------CCHHHHHHGGGGEEEEEEEEECC
T ss_pred CCCceEEEEec------CcchHHHHHHHHHhCCCEEEEEe
Confidence 23589888532 12345777888999999999865
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.03 Score=44.84 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhH
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPV 101 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~ 101 (232)
+|||||+|.|.++..+... +..++++++.++.
T Consensus 46 ~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~ 78 (322)
T d1i4wa_ 46 KVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS 78 (322)
T ss_dssp EEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH
T ss_pred eEEEECCCCCHHHHHHHhcCCCCEEEEEECCHH
Confidence 8999999999999888765 5568999999995
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.42 E-value=0.019 Score=41.51 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=53.4
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..+++ +||=.|+ |. |...+.+++. |+ ++++++.++. .+.++ ..+.+ .. .+..+.........
T Consensus 25 ~~~g~--~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~----~lGa~----~~---i~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 25 ARPGE--KVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL----ALGAE----EA---ATYAEVPERAKAWG 90 (171)
T ss_dssp CCTTC--EEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH----HTTCS----EE---EEGGGHHHHHHHTT
T ss_pred CCCCC--EEEEEeccccchhhhhhhhccccc-cccccccccccccccc----ccccc----ee---eehhhhhhhhhccc
Confidence 45788 9999885 54 6777777776 87 8999988763 22222 22211 11 12221111111134
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.+|+|+-. .. +. +....++++++|+++...
T Consensus 91 g~D~v~d~--~G--~~----~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 91 GLDLVLEV--RG--KE----VEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp SEEEEEEC--SC--TT----HHHHHTTEEEEEEEEEC-
T ss_pred cccccccc--cc--hh----HHHHHHHHhcCCcEEEEe
Confidence 69998853 22 22 455678999999988753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.34 E-value=0.063 Score=43.53 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=62.1
Q ss_pred CcEEEeCccccHHHHHHHHh------------------CCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCC
Q 026858 69 RRAIELGAGCGAAGMAFYLL------------------GLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNN 129 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~------------------~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~ 129 (232)
.+|.|+||.+|..++.+... .. +|...|... .-..+-+++..... .... -+...--+.
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~-qvf~nDLP~NDFNtLF~~L~~~~~-~~~~-~f~~gvpGS 129 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEY-QIFLNDLPGNDFNAIFRSLPIEND-VDGV-CFINGVPGS 129 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEE-EEEEEECTTSCHHHHHTTTTTSCS-CTTC-EEEEEEESC
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCCCcchHHHHHHhcccccc-CCCC-eEEEecCCc
Confidence 58999999999887433211 13 788888764 22222232221111 1111 122221111
Q ss_pred CcccccCCCCccEEEEcccCCCcc---------------------------------cHHHHHHHHHHhhCCCcEEEEEE
Q 026858 130 QDQINALKPPFDLVIAADVVYIEE---------------------------------SAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 130 ~~~~~~~~~~fD~Ii~~~~~~~~~---------------------------------~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.-..-..+++.|+++++..+||-+ ++..+++.=++-|.|||++++..
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 111112345788999887776532 56677777788889999999987
Q ss_pred eecC
Q 026858 177 QLRS 180 (232)
Q Consensus 177 ~~r~ 180 (232)
..|.
T Consensus 210 ~gr~ 213 (359)
T d1m6ex_ 210 LGRR 213 (359)
T ss_dssp EECS
T ss_pred eccC
Confidence 6664
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.19 E-value=0.022 Score=41.79 Aligned_cols=105 Identities=13% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCC----CceEEE-------EeecCCC
Q 026858 65 HSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLN----KSLKTS-------VLYWNNQ 130 (232)
Q Consensus 65 ~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~----~~i~~~-------~~d~~~~ 130 (232)
+.. +||=||+|. |..+...|.. |+ .|+..|.++. ++........ +.... ...... .-++...
T Consensus 28 ~pa--~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~-~i~~~~~~~~~~~~~~gyA~~~s~~~~~~ 103 (183)
T d1l7da1 28 PPA--RVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGK-FITVDDEAMKTAETAGGYAKEMGEEFRKK 103 (183)
T ss_dssp CCC--EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCE-ECCC-----------------------CC
T ss_pred CCc--EEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcc-eEEEeccccccccccccchhhcCHHHHHH
Confidence 445 899999998 7777666654 88 9999999983 3333331111 10000 000000 0000000
Q ss_pred c--ccccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEE
Q 026858 131 D--QINALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 131 ~--~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~ 173 (232)
. .....-...|+||..-.+-......-.-+.+.+.||||..++
T Consensus 104 ~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 104 QAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 0 000012358999986555443333334477888999988776
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.14 E-value=0.057 Score=42.69 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=46.0
Q ss_pred CCcEEEeCccccHHHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 68 RRRAIELGAGCGAAGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 68 ~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
.++||||.||.|.++..+.+.|+..+.++|+++ ++...+.|. +.. . ..|+.+... .....+|+++.+
T Consensus 11 ~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~----~~~---~---~~Di~~~~~--~~~~~~Dll~gg 78 (327)
T d2c7pa1 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF----GEK---P---EGDITQVNE--KTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH----SCC---C---BSCGGGSCG--GGSCCCSEEEEE
T ss_pred CCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC----CCC---C---cCchhcCch--hhcceeeeeecc
Confidence 349999999999999988888986677799998 344444443 211 0 123333221 112468999987
Q ss_pred ccC
Q 026858 147 DVV 149 (232)
Q Consensus 147 ~~~ 149 (232)
.+.
T Consensus 79 pPC 81 (327)
T d2c7pa1 79 FPC 81 (327)
T ss_dssp CCC
T ss_pred ccc
Confidence 765
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.02 E-value=0.06 Score=40.77 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=34.7
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKH 107 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~ 107 (232)
..++. .|||-.||+|.+++.+.+.+- +++++|+++. ...+.+
T Consensus 210 s~~gd--~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~ 252 (256)
T d1g60a_ 210 SNPND--LVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANF 252 (256)
T ss_dssp CCTTC--EEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred CCCCC--EEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHH
Confidence 34778 999999999999999888886 9999999984 444443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.40 E-value=0.44 Score=33.65 Aligned_cols=94 Identities=15% Similarity=0.039 Sum_probs=55.4
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC-ccc-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ-DQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-~~~----- 133 (232)
..++. +||=.|||. |..++.+++. |+..|+++|.++. .+.+++ .+.. ... +.... +..
T Consensus 26 ~~~G~--tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa~-----~~i--~~~~~~~~~~~~~~ 92 (176)
T d2fzwa2 26 LEPGS--VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT-----ECI--NPQDFSKPIQEVLI 92 (176)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS-----EEE--CGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCCc-----EEE--eCCchhhHHHHHHH
Confidence 45788 999999985 5566666654 8778999999873 332222 2211 111 11111 100
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
....+.+|+|+-+- .-..+++....++++||.+.+.
T Consensus 93 ~~~~~g~D~vid~~------G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 93 EMTDGGVDYSFECI------GNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHTTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred HHcCCCCcEeeecC------CCHHHHHHHHHhhcCCceeEEE
Confidence 11234699999642 1245777888899998776654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.17 E-value=0.12 Score=39.56 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=36.2
Q ss_pred cCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH-HHHHHHHHH
Q 026858 64 FHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV-MPALKHNLK 110 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~ 110 (232)
.++. .|||-.||+|..++.+...|- +++++|+++. ...+.+.+.
T Consensus 206 ~~gd--iVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 206 HPGS--TVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp CTTC--EEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHH
T ss_pred CCCC--EEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHH
Confidence 4778 999999999999999988886 9999999985 455555444
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.06 E-value=0.052 Score=39.17 Aligned_cols=93 Identities=18% Similarity=0.064 Sum_probs=54.0
Q ss_pred ccCCCCCcEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---c-
Q 026858 63 DFHSTRRRAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---A- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~- 135 (232)
..+++ +||=.|+ |. |..++.+|+. |+ ++++++.++. ....++..+.. . ..+..+..... .
T Consensus 23 ~~~g~--~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~---~~~~l~~~Ga~-----~--vi~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 23 LSPGE--RVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDA---KREMLSRLGVE-----Y--VGDSRSVDFADEILEL 89 (183)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHH---HHHHHHTTCCS-----E--EEETTCSTHHHHHHHH
T ss_pred CCCCC--EEEEECCCCCcccccchhhccccc-cceeeecccc---ccccccccccc-----c--cccCCccCHHHHHHHH
Confidence 44677 8998874 43 7777777766 87 7887776652 12222333321 1 12222222101 1
Q ss_pred -CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 136 -LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 136 -~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
....+|+|+.+- . ...++.+.++|+++|+++..
T Consensus 90 t~~~g~d~v~d~~--g-----~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 90 TDGYGVDVVLNSL--A-----GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTTCCEEEEEECC--C-----THHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCEEEEEecc--c-----chHHHHHHHHhcCCCEEEEE
Confidence 124699999643 2 23566778999999998886
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=92.97 E-value=0.31 Score=38.23 Aligned_cols=107 Identities=11% Similarity=0.105 Sum_probs=65.3
Q ss_pred cEEEeCccccHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcc--c--ccCCCCccEEE
Q 026858 70 RAIELGAGCGAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQ--I--NALKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~--~--~~~~~~fD~Ii 144 (232)
.|+.||||.=.-...+... +. +++=+|..+++..-++-+..+......+......|...... + .+.+..--.++
T Consensus 92 qvV~LGaGlDTr~~Rl~~~~~~-~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl~ 170 (297)
T d2uyoa1 92 QFVILASGLDSRAYRLDWPTGT-TVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTAW 170 (297)
T ss_dssp EEEEETCTTCCHHHHSCCCTTC-EEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEEE
T ss_pred eEEEeCcccCChhhhcCCCcCc-eEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEEE
Confidence 6778999986655544322 33 66666766666655555555543334556677777665321 1 11222222444
Q ss_pred Eccc-C-C-CcccHHHHHHHHHHhhCCCcEEEEEEe
Q 026858 145 AADV-V-Y-IEESAAQLVRAMEALVADDGVVLLGYQ 177 (232)
Q Consensus 145 ~~~~-~-~-~~~~~~~~l~~l~~~l~pgG~l~i~~~ 177 (232)
+... + | ..+....+++.+..+..||+.+++-+.
T Consensus 171 i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 171 LAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 4443 4 3 567899999999999999999888654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.84 E-value=0.079 Score=41.33 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=32.1
Q ss_pred ccCCCCCcEEEeCccccHHHHHHHHhCCCcEEEEcchhH
Q 026858 63 DFHSTRRRAIELGAGCGAAGMAFYLLGLADIVLTDISPV 101 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~~s~~la~~~~~~v~~~D~s~~ 101 (232)
..++. .|||-.||+|.++..+...|. +++++|+++.
T Consensus 248 s~~gd--iVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~ 283 (320)
T d1booa_ 248 TEPDD--LVVDIFGGSNTTGLVAERESR-KWISFEMKPE 283 (320)
T ss_dssp CCTTC--EEEETTCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred ccCCC--EEEecCCCCcHHHHHHHHcCC-cEEEEeCCHH
Confidence 34778 999999999999999888887 9999999984
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.24 E-value=0.54 Score=35.60 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=53.3
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++. +......+.... ..++.....|+.+.....
T Consensus 2 ~l~gK--~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~---g~~~~~~~~Dv~~~~~v~~~~~ 75 (251)
T d1vl8a_ 2 DLRGR--VALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDVSNYEEVKKLLE 75 (251)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHh---CCcEEEEEccCCCHHHHHHHHH
Confidence 45778 89999988776 4466677798 9999999863 444444332221 234567788887765321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
...++.|++|.+..+.
T Consensus 76 ~~~~~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 76 AVKEKFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 1235799999866553
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=92.18 E-value=0.35 Score=36.91 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=54.5
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ ++|=.|+..|+ ++..+++.|+ +|+.+|.++ .++.+.+.+.... ..+.+...|+.+.....
T Consensus 3 ~L~gK--~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~----~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 3 SLKGT--TALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKG----LNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp CCTTC--EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CCceEEEeecCCHHHHHHHHH
Confidence 34788 99999998765 4456667798 999999987 3555555554443 33567788887765321
Q ss_pred ----cCCCCccEEEEcccCC
Q 026858 135 ----ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ----~~~~~fD~Ii~~~~~~ 150 (232)
...+..|+++.+....
T Consensus 76 ~~~~~~~g~idilinnag~~ 95 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVV 95 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCC
T ss_pred HHHHHhCCCcEEEecccccc
Confidence 1235689998765553
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=92.17 E-value=0.32 Score=39.16 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=29.3
Q ss_pred CcEEEeCccccHHHHHHHHh--------CCCcEEEEcchhHHHHHHHHH
Q 026858 69 RRAIELGAGCGAAGMAFYLL--------GLADIVLTDISPVMPALKHNL 109 (232)
Q Consensus 69 ~~VLElGcGtG~~s~~la~~--------~~~~v~~~D~s~~~~~~~~n~ 109 (232)
.+|+|+|+|+|.++.-+.+. ...+++.++.|+.+...+++.
T Consensus 81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~ 129 (365)
T d1zkda1 81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTL 129 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHH
T ss_pred ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHH
Confidence 38999999999988655432 122689999999665555443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.00 E-value=0.59 Score=35.32 Aligned_cols=81 Identities=10% Similarity=0.034 Sum_probs=54.0
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++ .++.+...+...+ .++.....|+.+.+...
T Consensus 7 ~lenK--valITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g----~~~~~~~~Dvt~~~~v~~~~~ 79 (251)
T d2c07a1 7 CGENK--VALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG----YESSGYAGDVSKKEEISEVIN 79 (251)
T ss_dssp CCSSC--EEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHH
Confidence 45778 88888987764 3345556688 999999987 3555555554332 34678888888765321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
...++.|++|.+....
T Consensus 80 ~~~~~~g~iDilvnnag~~ 98 (251)
T d2c07a1 80 KILTEHKNVDILVNNAGIT 98 (251)
T ss_dssp HHHHHCSCCCEEEECCCCC
T ss_pred HHHHhcCCceeeeeccccc
Confidence 1236899999866553
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.73 E-value=0.16 Score=36.13 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=54.8
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|-=||+|. |. ++..+++.|. +|++.|.++. +.....+...................... ....-...|+|+.+
T Consensus 3 ~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~aD~iii~ 79 (184)
T d1bg6a2 3 TYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSD--IGLAVKDADVILIV 79 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESC--HHHHHTTCSEEEEC
T ss_pred EEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhh--hHhHhcCCCEEEEE
Confidence 677789987 44 5566777788 9999999873 33332221110000000011111100000 01112468999986
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEE
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLL 174 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i 174 (232)
-. ......+++.+...++++..+++
T Consensus 80 v~---~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 VP---AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp SC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred Ec---hhHHHHHHHHhhhccCCCCEEEE
Confidence 43 34678888999999998876553
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.46 E-value=0.82 Score=34.65 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=54.5
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----- 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----- 134 (232)
+.++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++. ++.....+.... ...++.....|+.+.+...
T Consensus 2 l~gK--~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~~~Dvt~~~~v~~~~~~ 76 (258)
T d1iy8a_ 2 FTDR--VVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETA--PDAEVLTTVADVSDEAQVEAYVTA 76 (258)
T ss_dssp CTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHC--TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhC--CCCeEEEEeccCCCHHHHHHHHHH
Confidence 3667 88888988776 5567777898 9999999873 555554444333 2345678888887765321
Q ss_pred --cCCCCccEEEEcccC
Q 026858 135 --ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~ 149 (232)
..-++.|++|.+..+
T Consensus 77 ~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 77 TTERFGRIDGFFNNAGI 93 (258)
T ss_dssp HHHHHSCCSEEEECCCC
T ss_pred HHHHhCCCCEEEECCcc
Confidence 123679999976544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.24 E-value=0.36 Score=34.67 Aligned_cols=120 Identities=9% Similarity=-0.004 Sum_probs=63.3
Q ss_pred ccCCCCCcEEEeCccc--cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGC--GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt--G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
..++. +||=-|++. |..++.+++. |+ +|+++..++. .+.++. .+... .+.... ++.. ....-..+
T Consensus 29 ~~~g~--~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~----lGa~~--vi~~~~-~~~~-~~~~~~~~ 97 (176)
T d1xa0a2 29 TPERG--PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKE--VLARED-VMAE-RIRPLDKQ 97 (176)
T ss_dssp CGGGC--CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSE--EEECC-----------CCSC
T ss_pred CCCCC--EEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh----cccce--eeecch-hHHH-HHHHhhcc
Confidence 34567 899988654 5577777765 87 8999887763 333322 22110 011111 1110 00011234
Q ss_pred CccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 139 PFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 139 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
.+|+|+-. +. ...+....++|+++|+++.+.....+.....+...+.++..+.-+
T Consensus 98 gvD~vid~--vg-----g~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv 152 (176)
T d1xa0a2 98 RWAAAVDP--VG-----GRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI 152 (176)
T ss_dssp CEEEEEEC--ST-----TTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred CcCEEEEc--CC-----chhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence 79988842 32 224677889999999999875443322222334444444555443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.03 E-value=1.2 Score=31.04 Aligned_cols=115 Identities=12% Similarity=0.120 Sum_probs=62.5
Q ss_pred cEEEeCccc-cH-HHHHHHHhCC-CcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGL-ADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~-~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|+=||||. |. ++..+.+.+. .+|++.|.++. ....+...+.. . ... .+ .. .......|+|+.+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~---~~~~a~~~~~~--~--~~~-~~---~~--~~~~~~~dlIila 69 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE---SISKAVDLGII--D--EGT-TS---IA--KVEDFSPDFVMLS 69 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH---HHHHHHHTTSC--S--EEE-SC---GG--GGGGTCCSEEEEC
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH---HHHHHHHhhcc--h--hhh-hh---hh--hhhcccccccccc
Confidence 577788876 33 4455555553 38999999983 22222222210 0 000 00 01 1112357999987
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCc-eEEEec
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVF-LIEKVP 201 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f-~~~~~~ 201 (232)
-+. ......+..+...++++..+.-+..... ...+.+.+.+...| -.+...
T Consensus 70 ~p~---~~~~~vl~~l~~~~~~~~ii~d~~s~k~-~~~~~~~~~~~~~~i~~hPm~ 121 (171)
T d2g5ca2 70 SPV---RTFREIAKKLSYILSEDATVTDQGSVKG-KLVYDLENILGKRFVGGHPIA 121 (171)
T ss_dssp SCH---HHHHHHHHHHHHHSCTTCEEEECCSCCT-HHHHHHHHHHGGGEECEEEEC
T ss_pred CCc---hhhhhhhhhhhccccccccccccccccH-HHHHHHHHhhccccccccccc
Confidence 543 4567788889999988866655543333 33444445455555 355554
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=90.98 E-value=0.42 Score=36.43 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=64.2
Q ss_pred cEEEeCccccHHHHHHHHhCC-----------------------------------------CcEEEEcchh-HHHHH--
Q 026858 70 RAIELGAGCGAAGMAFYLLGL-----------------------------------------ADIVLTDISP-VMPAL-- 105 (232)
Q Consensus 70 ~VLElGcGtG~~s~~la~~~~-----------------------------------------~~v~~~D~s~-~~~~~-- 105 (232)
.++|--||+|.+.+.+|.... ..+.+.|+++ ++..+
T Consensus 53 ~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~~ 132 (249)
T d1o9ga_ 53 TLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARR 132 (249)
T ss_dssp EEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHHH
Confidence 799999999999887765310 1345666665 34443
Q ss_pred -HHHHHhcCCCCCCceEEEEeecCCCcccc--cCCCCccEEEEcccCCC----c-----ccHHHHHHHHHHhhCCCcEEE
Q 026858 106 -KHNLKRNKPVLNKSLKTSVLYWNNQDQIN--ALKPPFDLVIAADVVYI----E-----ESAAQLVRAMEALVADDGVVL 173 (232)
Q Consensus 106 -~~n~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~fD~Ii~~~~~~~----~-----~~~~~~l~~l~~~l~pgG~l~ 173 (232)
+.|+...+ +...+.+...|+-+..... ......++||++++... . +.+..+...+.+.+.....++
T Consensus 133 ~r~n~~~Ag--l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~ 210 (249)
T d1o9ga_ 133 LRERLTAEG--GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA 210 (249)
T ss_dssp HHHHHHHTT--SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHcC--CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEE
Confidence 34555444 4566788887765433211 12345799999877631 1 135666667777776555555
Q ss_pred EEE
Q 026858 174 LGY 176 (232)
Q Consensus 174 i~~ 176 (232)
++.
T Consensus 211 it~ 213 (249)
T d1o9ga_ 211 VTD 213 (249)
T ss_dssp EEE
T ss_pred EeC
Confidence 554
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.56 E-value=1.5 Score=32.93 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=58.0
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...|+ .+|=-|++.|+ ++..+++.|+ +|+.+|.++. ++.....+...+ .++.....|+.+.+...
T Consensus 4 ~l~Gk--v~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dvs~~~~v~~~~~ 76 (244)
T d1yb1a_ 4 SVTGE--IVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG----AKVHTFVVDCSNREDIYSSAK 76 (244)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEeeCCCHHHHHHHHH
Confidence 45778 88888998876 5566777798 9999999973 666666665433 34678888888875421
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
...+..|+++.+....
T Consensus 77 ~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 77 KVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHTCCCSEEEECCCCC
T ss_pred HHHHHcCCCceeEeecccc
Confidence 1346799999877664
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.37 E-value=0.9 Score=34.42 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=54.1
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
++.++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++ .++.+...+...+ .++.....|+.+.+...
T Consensus 2 rL~gK--~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T d1zema1 2 KFNGK--VCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG----VEARSYVCDVTSEEAVIGTVD 74 (260)
T ss_dssp TTTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCCHHHHHHHHH
Confidence 45788 89988987765 4466677798 999999987 3555555554332 34677888887765321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
...+..|++|.+...
T Consensus 75 ~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 75 SVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCCCeehhhhcc
Confidence 123679999976443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.59 Score=33.02 Aligned_cols=93 Identities=9% Similarity=-0.022 Sum_probs=55.6
Q ss_pred ccCCCCCcEEEeCccc--cHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---c
Q 026858 63 DFHSTRRRAIELGAGC--GAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---A 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt--G~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---~ 135 (232)
..+++ +||=.|+|. |...+.+|+. |+ +++++|.++. .+.+++ .+.. . ..+..+.+... .
T Consensus 26 l~~g~--~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~----lGa~-----~--vi~~~~~d~~~~v~~ 91 (179)
T d1qora2 26 IKPDE--QFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK----AGAW-----Q--VINYREEDLVERLKE 91 (179)
T ss_dssp CCTTC--EEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH----HTCS-----E--EEETTTSCHHHHHHH
T ss_pred CCCCC--EEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh----cCCe-----E--EEECCCCCHHHHHHH
Confidence 35778 999987765 5577777766 88 9999999983 333322 2211 1 12333322111 1
Q ss_pred --CCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 136 --LKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 136 --~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
....+|+|+-+- . . ..+.....+++++|++++..
T Consensus 92 ~t~g~g~d~v~d~~--g-~----~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 92 ITGGKKVRVVYDSV--G-R----DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HTTTCCEEEEEECS--C-G----GGHHHHHHTEEEEEEEEECC
T ss_pred HhCCCCeEEEEeCc--c-H----HHHHHHHHHHhcCCeeeecc
Confidence 123589887532 2 1 24567788999999987753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.46 Score=35.98 Aligned_cols=90 Identities=18% Similarity=0.099 Sum_probs=58.2
Q ss_pred CCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-----
Q 026858 65 HSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA----- 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~----- 135 (232)
.|+ .+|=-|++.|+ ++..+++.|+ +|+.+|.++. +......+.... ...++.+...|+.+......
T Consensus 2 ~GK--valITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 2 NGK--VALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQF--EPQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp TTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTS--CGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEeecCCHHHHHHHHHHH
Confidence 356 78888887765 4455667798 9999999873 444444433322 23457788888887653211
Q ss_pred --CCCCccEEEEcccCCCcccHHHHH
Q 026858 136 --LKPPFDLVIAADVVYIEESAAQLV 159 (232)
Q Consensus 136 --~~~~fD~Ii~~~~~~~~~~~~~~l 159 (232)
.-++.|++|.+.......+++..+
T Consensus 77 ~~~~G~iDilVnnAg~~~~~~~~~~~ 102 (254)
T d2gdza1 77 VDHFGRLDILVNNAGVNNEKNWEKTL 102 (254)
T ss_dssp HHHHSCCCEEEECCCCCCSSSHHHHH
T ss_pred HHHcCCcCeecccccccccccchhee
Confidence 236799999888777666555444
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.80 E-value=1.8 Score=32.60 Aligned_cols=80 Identities=9% Similarity=0.132 Sum_probs=53.4
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++ .++.....+.... .++.+...|+.+.....
T Consensus 5 ~L~GK--~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g----~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d2ae2a_ 5 NLEGC--TALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG----FKVEASVCDLSSRSERQELMN 77 (259)
T ss_dssp CCTTC--EEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT----CEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CCceEEEeeCCCHHHHHHHHH
Confidence 45788 99988988765 4466667798 999999987 3555555444332 34567778887654321
Q ss_pred ----cCCCCccEEEEcccC
Q 026858 135 ----ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ----~~~~~fD~Ii~~~~~ 149 (232)
...++.|++|.+...
T Consensus 78 ~~~~~~~~~idilvnnAG~ 96 (259)
T d2ae2a_ 78 TVANHFHGKLNILVNNAGI 96 (259)
T ss_dssp HHHHHTTTCCCEEEECCCC
T ss_pred HHHHHhCCCceEEEECCce
Confidence 123479999986554
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.52 E-value=1.9 Score=30.21 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=52.0
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHHH-hCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCC-ccc-----
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFYL-LGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQ-DQI----- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la~-~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~-~~~----- 133 (232)
..++. +||=+|+|. |.....+++ .++.+|+++|.++. .+.+++ .+.. . ..+..+. +..
T Consensus 26 vk~Gd--tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~-----~--~i~~~~~~~~~~~~~~ 92 (176)
T d2jhfa2 26 VTQGS--TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT-----E--CVNPQDYKKPIQEVLT 92 (176)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS-----E--EECGGGCSSCHHHHHH
T ss_pred CCCCC--EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe-----e--EEecCCchhHHHHHHH
Confidence 45788 999999986 434444444 47669999999883 333322 2211 1 1111111 110
Q ss_pred ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCC-cEEEEEE
Q 026858 134 NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADD-GVVLLGY 176 (232)
Q Consensus 134 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pg-G~l~i~~ 176 (232)
....+.+|+|+-+.. .+..++.....++++ |.+++..
T Consensus 93 ~~~~~G~D~vid~~G------~~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 93 EMSNGGVDFSFEVIG------RLDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp HHTTSCBSEEEECSC------CHHHHHHHHHHBCTTTCEEEECS
T ss_pred HHhcCCCCEEEecCC------chhHHHHHHHHHhcCCcceEEec
Confidence 012346999886422 234566666777775 5666553
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.35 E-value=1.4 Score=33.34 Aligned_cols=81 Identities=11% Similarity=0.039 Sum_probs=54.7
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
...++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++ .+......+.... .++.....|+.+.....
T Consensus 5 ~LkgK--~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~ 77 (259)
T d1xq1a_ 5 SLKAK--TVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKG----FQVTGSVCDASLRPEREKLMQ 77 (259)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC----CceEEEeccCCCHHHHHHHHH
Confidence 44788 99999988876 4456677798 999999987 3555555554433 34677788887654311
Q ss_pred ----cCCCCccEEEEcccCC
Q 026858 135 ----ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ----~~~~~fD~Ii~~~~~~ 150 (232)
...+..|+++.+....
T Consensus 78 ~~~~~~~g~idilvnnAG~~ 97 (259)
T d1xq1a_ 78 TVSSMFGGKLDILINNLGAI 97 (259)
T ss_dssp HHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHhCCCccccccccccc
Confidence 1236799999876553
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.27 E-value=0.28 Score=34.91 Aligned_cols=118 Identities=12% Similarity=0.040 Sum_probs=63.8
Q ss_pred CCCCCcEEEeCcc--ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCc
Q 026858 65 HSTRRRAIELGAG--CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPF 140 (232)
Q Consensus 65 ~~~~~~VLElGcG--tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f 140 (232)
++. +||=-|++ -|..++.+|+. |+ +|+++.-++. .+.++. .+.+ .....-++..........+.+
T Consensus 23 ~~~--~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~----lGad----~vi~~~~~~~~~~~~~~~~gv 91 (167)
T d1tt7a2 23 EKG--SVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGAS----EVISREDVYDGTLKALSKQQW 91 (167)
T ss_dssp GGC--CEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCS----EEEEHHHHCSSCCCSSCCCCE
T ss_pred CCC--EEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHh----hccc----ceEeccchhchhhhcccCCCc
Confidence 556 68877643 26677777776 88 8999988762 333322 2211 111111221111111123469
Q ss_pred cEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHhcCceEEEe
Q 026858 141 DLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCAEVFLIEKV 200 (232)
Q Consensus 141 D~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~~~f~~~~~ 200 (232)
|+|+-+ +. ...+....+.|+++|+++++...........+..++.++..+.-+
T Consensus 92 d~vid~--vg-----g~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~ 144 (167)
T d1tt7a2 92 QGAVDP--VG-----GKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGI 144 (167)
T ss_dssp EEEEES--CC-----THHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEEC
T ss_pred eEEEec--Cc-----HHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEE
Confidence 988743 22 346677889999999998865333222122334445555555544
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=1.5 Score=32.83 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=48.9
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN----- 134 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~----- 134 (232)
+.++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++. ++...+.+. .+......|+.+.+...
T Consensus 2 l~gK--~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~ 71 (243)
T d1q7ba_ 2 FEGK--IALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEK 71 (243)
T ss_dssp CTTC--EEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCC--EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhh
Confidence 3567 88888887765 4456667798 9999999873 444444332 23466677877654321
Q ss_pred --cCCCCccEEEEcccC
Q 026858 135 --ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 --~~~~~fD~Ii~~~~~ 149 (232)
..-++.|++|.+...
T Consensus 72 ~~~~~g~iDilVnnAg~ 88 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNAGI 88 (243)
T ss_dssp HHHHTCSCSEEEECCCC
T ss_pred hhcccCCcceehhhhhh
Confidence 123679999976544
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.07 E-value=1.9 Score=30.09 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=27.1
Q ss_pred ccCCCCCcEEEeCccc-cHHHHHHH-HhCCCcEEEEcchhH
Q 026858 63 DFHSTRRRAIELGAGC-GAAGMAFY-LLGLADIVLTDISPV 101 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt-G~~s~~la-~~~~~~v~~~D~s~~ 101 (232)
..++. +||=+|||. |.....++ ..++..|+++|.++.
T Consensus 26 ~k~g~--~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~ 64 (175)
T d1cdoa2 26 VEPGS--TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD 64 (175)
T ss_dssp CCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCCC--EEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence 45778 999999998 44444444 446668999999883
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=88.43 E-value=0.9 Score=31.62 Aligned_cols=87 Identities=8% Similarity=0.014 Sum_probs=50.3
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|.=||+|. |. ++..+.+.|. +|++.|.++. ..+.....+. . . .. . ...+ .-...|+|+.+-
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~---~~~~a~~~~~-~-~--~~--~--~~~~----~~~~~DiIilav 65 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQS---TCEKAVERQL-V-D--EA--G--QDLS----LLQTAKIIFLCT 65 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH---HHHHHHHTTS-C-S--EE--E--SCGG----GGTTCSEEEECS
T ss_pred EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCch---HHHHHHHhhc-c-c--ee--e--eecc----cccccccccccC
Confidence 566678875 33 4555566688 9999999872 1222222221 0 0 00 0 0001 124689999754
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
+ ....+.+++.+...++++..++-.
T Consensus 66 p---~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 66 P---IQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp C---HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred c---Hhhhhhhhhhhhhhcccccceeec
Confidence 3 356777888888888887766544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.94 E-value=1.6 Score=30.82 Aligned_cols=118 Identities=9% Similarity=0.027 Sum_probs=60.8
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAA 146 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~ 146 (232)
+|==||+|. |. ++..|++.|+ +|++.|.++. ++.... +......... ..............|.++..
T Consensus 4 nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~----~~~~~~~~~~-----a~~~~~~~~~~~~~~~ii~~ 73 (176)
T d2pgda2 4 DIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLA----NEAKGTKVLG-----AHSLEEMVSKLKKPRRIILL 73 (176)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHH----TTTTTSSCEE-----CSSHHHHHHHBCSSCEEEEC
T ss_pred cEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH----hccccccccc-----hhhhhhhhhhhcccceEEEe
Confidence 566677776 43 4555566688 9999999883 332222 1110000000 00001000112346777764
Q ss_pred ccCCCcccHHHHHHHHHHhhCCCcEEEEEEeecChhHHHHHHHHHh-cCceEEEe
Q 026858 147 DVVYIEESAAQLVRAMEALVADDGVVLLGYQLRSPEAHKLFWEMCA-EVFLIEKV 200 (232)
Q Consensus 147 ~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~r~~~~~~~~~~~~~-~~f~~~~~ 200 (232)
+.........+..+...+++|-+++-. ..-.+.....+.+.+. .+..+...
T Consensus 74 --~~~~~~v~~v~~~l~~~~~~g~iiid~-sT~~~~~~~~~~~~~~~~g~~~lda 125 (176)
T d2pgda2 74 --VKAGQAVDNFIEKLVPLLDIGDIIIDG-GNSEYRDTMRRCRDLKDKGILFVGS 125 (176)
T ss_dssp --SCTTHHHHHHHHHHHHHCCTTCEEEEC-SCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred --cCchHHHHHHHHHHHhccccCcEEEec-CcchhHHHHHHHHHHHhcCCceecc
Confidence 334456677778888888887654444 3444444445545444 46655543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.82 E-value=0.22 Score=35.79 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=56.3
Q ss_pred ccCCCCCcEEEeCccc--cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc-----c
Q 026858 63 DFHSTRRRAIELGAGC--GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI-----N 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt--G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~-----~ 134 (232)
..+++ +||=.|++. |...+.+++. |+ ++++++.++. ...-.+..+.. .. .+-.+.... .
T Consensus 27 v~~G~--~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~---~~~~~~~~Ga~-----~v--i~~~~~~~~~~~~~~ 93 (182)
T d1v3va2 27 VKGGE--TVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDE---KIAYLKQIGFD-----AA--FNYKTVNSLEEALKK 93 (182)
T ss_dssp CCSSC--EEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHH---HHHHHHHTTCS-----EE--EETTSCSCHHHHHHH
T ss_pred CCCCC--EEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHH---HHHHHHhhhhh-----hh--cccccccHHHHHHHH
Confidence 45788 999888865 4466777766 77 9999987762 12222222211 11 121221111 1
Q ss_pred cCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 135 ALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 135 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
.....+|+|+-+ +. .+.++...++++++|++++..
T Consensus 94 ~~~~Gvd~v~D~--vG-----~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 94 ASPDGYDCYFDN--VG-----GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HCTTCEEEEEES--SC-----HHHHHHHGGGEEEEEEEEECC
T ss_pred hhcCCCceeEEe--cC-----chhhhhhhhhccCCCeEEeec
Confidence 123469998853 22 346788899999999999864
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=87.36 E-value=0.56 Score=33.81 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=50.3
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCC
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKP 138 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 138 (232)
...++ +||=.|++.|. ++..+++.|+ +|+.++.++ ........+..+. .+.....|..+.......-+
T Consensus 20 ~l~gK--~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~ 91 (191)
T d1luaa1 20 SVKGK--KAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF-----KVNVTAAETADDASRAEAVK 91 (191)
T ss_dssp CCTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH-----TCCCEEEECCSHHHHHHHTT
T ss_pred CCCCC--EEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc-----chhhhhhhcccHHHHHHHhc
Confidence 56888 99999987654 4456667798 999999987 3555555444332 12345556555443333345
Q ss_pred CccEEEEcccC
Q 026858 139 PFDLVIAADVV 149 (232)
Q Consensus 139 ~fD~Ii~~~~~ 149 (232)
..|+++.+...
T Consensus 92 ~iDilin~Ag~ 102 (191)
T d1luaa1 92 GAHFVFTAGAI 102 (191)
T ss_dssp TCSEEEECCCT
T ss_pred CcCeeeecCcc
Confidence 78999976543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.09 E-value=0.48 Score=35.97 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=54.3
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
.+.++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++ .++.+...+...+ .++.+...|+.+.....
T Consensus 8 ~L~gK--~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g----~~~~~~~~Dvs~~~~~~~~~~ 80 (255)
T d1fmca_ 8 RLDGK--CAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG----GQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC----CcEEEEEccCCCHHHHHHHHH
Confidence 45788 89988887765 3455666798 999999987 3555555554432 34677888887765321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
..-++.|+++.+....
T Consensus 81 ~~~~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 81 FAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHSSCCEEEECCCCC
T ss_pred HHHHHcCCCCEeeeCCcCC
Confidence 1125799999866553
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.87 E-value=2.5 Score=31.84 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=52.0
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
.+.++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++. ++.....+.. ...+.+...|+.+.+...
T Consensus 3 rL~gK--valITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~-----~~~~~~~~~Dv~~~~~v~~~~~ 74 (268)
T d2bgka1 3 RLQDK--VAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS-----PDVISFVHCDVTKDEDVRNLVD 74 (268)
T ss_dssp TTTTC--EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-----TTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC-----CCceEEEEccCCCHHHHHHHHH
Confidence 45778 89999988876 3455667798 9999999873 4444443321 234677778887765321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
...++.|++|.+...
T Consensus 75 ~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 75 TTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCcceecccccc
Confidence 123579999976544
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=86.67 E-value=2.2 Score=32.20 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=65.8
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh--HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP--VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN--- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~--~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~--- 134 (232)
...++ .+|=-|++.|+ ++..+++.|+ +|+.+|.+. .++.....+.... .++.+...|+.+.+...
T Consensus 15 sL~gK--~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g----~~~~~~~~D~~~~~~v~~~~ 87 (272)
T d1g0oa_ 15 SLEGK--VALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNG----SDAACVKANVGVVEDIVRMF 87 (272)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT----CCEEEEECCTTCHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhC----CceeeEeCCCCCHHHHHHHH
Confidence 35778 99999998776 4556667798 899998774 3445555444443 34577788887755321
Q ss_pred ----cCCCCccEEEEcccCCCcc--------c-----------HHHHHHHHHHhhCCCcEEEEE
Q 026858 135 ----ALKPPFDLVIAADVVYIEE--------S-----------AAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 135 ----~~~~~fD~Ii~~~~~~~~~--------~-----------~~~~l~~l~~~l~pgG~l~i~ 175 (232)
...+..|+++.+....... . .-.+.+.+.+.|+.+|.+++.
T Consensus 88 ~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 88 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 1235789999765543221 1 222344455566667776665
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=86.30 E-value=1.6 Score=32.76 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=50.0
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
++.++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++. ++.....+ ..+..+...|+.+.....
T Consensus 3 rL~gK--~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~~~~~~~ 72 (253)
T d1hxha_ 3 RLQGK--VALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL-------GERSMFVRHDVSSEADWTLVMA 72 (253)
T ss_dssp TTTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH-------CTTEEEECCCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-------CCCeEEEEeecCCHHHHHHHHH
Confidence 45778 89988887765 4455666798 9999999873 44443322 223466677776654321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
...++.|++|.+....
T Consensus 73 ~~~~~~g~iDilVnnAG~~ 91 (253)
T d1hxha_ 73 AVQRRLGTLNVLVNNAGIL 91 (253)
T ss_dssp HHHHHHCSCCEEEECCCCC
T ss_pred HHHHHhCCCCeEEeccccc
Confidence 1236789999876654
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=85.65 E-value=2.3 Score=31.92 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=51.4
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
.+.++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++. +....+ . +..++.+...|+.+.+....
T Consensus 2 dL~gK--~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~---~----~~~~~~~~~~Dv~~~~~v~~~~~ 71 (254)
T d1hdca_ 2 DLSGK--TVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAR---E----LGDAARYQHLDVTIEEDWQRVVA 71 (254)
T ss_dssp CCCCS--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---T----TGGGEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---H----hCCceEEEEcccCCHHHHHHHHH
Confidence 34678 89999988875 4566677798 8999999872 322222 1 23456788888877653211
Q ss_pred ----CCCCccEEEEcccCC
Q 026858 136 ----LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~~ 150 (232)
..++.|++|.+....
T Consensus 72 ~~~~~~g~iDilVnnAg~~ 90 (254)
T d1hdca_ 72 YAREEFGSVDGLVNNAGIS 90 (254)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCccEEEecCccc
Confidence 135799999766553
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.18 E-value=3.1 Score=31.02 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=53.1
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
++.++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++. ++...+.+. ...++.+...|+.+.....
T Consensus 3 rL~gK--~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~ 74 (251)
T d1zk4a1 3 RLDGK--VAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG-----TPDQIQFFQHDSSDEDGWTKLFD 74 (251)
T ss_dssp TTTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC-----CTTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC-----CCCcEEEEEccCCCHHHHHHHHH
Confidence 45778 89988887765 4456677798 8999999873 444444332 1245678888887765321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
..-++.|++|.+....
T Consensus 75 ~~~~~~G~iDiLVnnAg~~ 93 (251)
T d1zk4a1 75 ATEKAFGPVSTLVNNAGIA 93 (251)
T ss_dssp HHHHHHSSCCEEEECCCCC
T ss_pred HHHHHhCCceEEEeccccc
Confidence 1236799999766553
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.70 E-value=0.29 Score=34.09 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=56.3
Q ss_pred cEEEeCccc-cH-HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCcccccCCCCccEEEEcc
Q 026858 70 RAIELGAGC-GA-AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINALKPPFDLVIAAD 147 (232)
Q Consensus 70 ~VLElGcGt-G~-~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~ 147 (232)
+|+=||+|. |. ++..+++.|. .|++++.++. ......... ................ ..+.+|+|+..-
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~D~iii~v 71 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQ---PYCSVNLVE--TDGSIFNESLTANDPD----FLATSDLLLVTL 71 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC---SEEEEEEEC--TTSCEEEEEEEESCHH----HHHTCSEEEECS
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHH---Hhhhhcccc--CCccccccccccchhh----hhcccceEEEee
Confidence 688899987 44 6666777788 9999998761 000000001 1111111111111111 124699999865
Q ss_pred cCCCcccHHHHHHHHHHhhCCCcEEEEEEee
Q 026858 148 VVYIEESAAQLVRAMEALVADDGVVLLGYQL 178 (232)
Q Consensus 148 ~~~~~~~~~~~l~~l~~~l~pgG~l~i~~~~ 178 (232)
..+ +.+.+++.+...++++..++.....
T Consensus 72 ka~---~~~~~~~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 72 KAW---QVSDAVKSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp CGG---GHHHHHHHHHTTSCTTSCEEEECSS
T ss_pred ccc---chHHHHHhhccccCcccEEeeccCc
Confidence 433 6788899999999998888776543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.50 E-value=2.5 Score=31.50 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=51.2
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
++.++ ++|=-|++.|+ ++..+++.|+ +|+++|.++. ++.....+ ..+..+...|+.+.....
T Consensus 3 ~L~gK--~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~ 72 (244)
T d1nffa_ 3 RLTGK--VALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAEL-------ADAARYVHLDVTQPAQWKAAVD 72 (244)
T ss_dssp TTTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT-------GGGEEEEECCTTCHHHHHHHHH
T ss_pred ccCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-------hCcceEEEeecCCHHHHHHHHH
Confidence 35678 88888988775 4456667798 9999999873 43333322 234577788887765321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
...+..|+++.+....
T Consensus 73 ~~~~~~g~idilinnAG~~ 91 (244)
T d1nffa_ 73 TAVTAFGGLHVLVNNAGIL 91 (244)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhCCCeEEEECCccc
Confidence 1235799999766554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=84.23 E-value=4.2 Score=30.02 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=50.2
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
++.++ .+|=.|++.|+ ++..++..|+ +|+.++.+.. ...+.... +..++.+...|+.+.+....
T Consensus 2 ~l~gK--~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~----~~~~~~~~~~Dls~~~~i~~~~~~ 72 (241)
T d2a4ka1 2 RLSGK--TILVTGAASGIGRAALDLFAREGA-SLVAVDREER--LLAEAVAA----LEAEAIAVVADVSDPKAVEAVFAE 72 (241)
T ss_dssp TTTTC--EEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHH--HHHHHHHT----CCSSEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHH--HHHHHHHH----cCCceEEEEecCCCHHHHHHHHHH
Confidence 34678 89999988766 4455566698 9999999872 11222221 23456778888877653211
Q ss_pred ---CCCCccEEEEcccC
Q 026858 136 ---LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~ 149 (232)
.-++.|++|.+...
T Consensus 73 i~~~~g~iDiLinnAg~ 89 (241)
T d2a4ka1 73 ALEEFGRLHGVAHFAGV 89 (241)
T ss_dssp HHHHHSCCCEEEEGGGG
T ss_pred HHHHhCCccEecccccc
Confidence 12679999986554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.87 E-value=0.73 Score=34.91 Aligned_cols=82 Identities=18% Similarity=0.127 Sum_probs=53.9
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
.+.++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++ .+......+... ...++.....|+.+.+...
T Consensus 6 ~l~gK--~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~ 79 (260)
T d1h5qa_ 6 SFVNK--TIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKE---FGVKTKAYQCDVSNTDIVTKTIQ 79 (260)
T ss_dssp CCTTE--EEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHH---HTCCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHH---hCCceEEEEccCCCHHHHHHHHH
Confidence 56788 99999987765 4466677798 999999986 344443333222 1234577888887765321
Q ss_pred ---cCCCCccEEEEcccCC
Q 026858 135 ---ALKPPFDLVIAADVVY 150 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~~ 150 (232)
..-++.|++|.+....
T Consensus 80 ~~~~~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 80 QIDADLGPISGLIANAGVS 98 (260)
T ss_dssp HHHHHSCSEEEEEECCCCC
T ss_pred HHHHHhCCCcEeccccccc
Confidence 1246799999766543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.45 E-value=2 Score=30.49 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=49.0
Q ss_pred cEEEeCcc--ccHHHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc-CCCCccEEE
Q 026858 70 RAIELGAG--CGAAGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA-LKPPFDLVI 144 (232)
Q Consensus 70 ~VLElGcG--tG~~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii 144 (232)
+||=.|+. .|..++.+|+. |+ +|+++.-++. .+.++ ..+.+ .+ .+-........ ....+|.|+
T Consensus 34 ~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~----~lGad-----~v--i~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 34 EIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLK----SLGAS-----RV--LPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHH----HHTEE-----EE--EEGGGSSSCCSSCCCCEEEEE
T ss_pred cEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHH----hhccc-----cc--cccccHHHHHHHHhhcCCeeE
Confidence 67755542 25566777766 88 8888887763 32222 22211 11 11111111111 224578876
Q ss_pred EcccCCCcccHHHHHHHHHHhhCCCcEEEEEE
Q 026858 145 AADVVYIEESAAQLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 145 ~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~~ 176 (232)
|++. ...+....+.++++|+++.+.
T Consensus 102 --D~Vg-----g~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 102 --DTVG-----DKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp --ESSC-----HHHHHHHHHTEEEEEEEEECC
T ss_pred --EEcc-----hHHHHHHHHHhccccceEeec
Confidence 4443 346788889999999999874
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=2.1 Score=32.38 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=60.3
Q ss_pred cE-EEeCccccH---HHHHHHHh-CCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCcccc-------cC
Q 026858 70 RA-IELGAGCGA---AGMAFYLL-GLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN-------AL 136 (232)
Q Consensus 70 ~V-LElGcGtG~---~s~~la~~-~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~-------~~ 136 (232)
+| |==|++.|+ ++..+++. |+ +|+.++.++. ++.+.+.++... .++.+...|+.+..... ..
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG----LSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcC----CcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 66 344555554 33455555 66 9999999873 555555555443 23577888887765321 12
Q ss_pred CCCccEEEEcccCCCcc--------cHH-----------HHHHHHHHhhCCCcEEEEEE
Q 026858 137 KPPFDLVIAADVVYIEE--------SAA-----------QLVRAMEALVADDGVVLLGY 176 (232)
Q Consensus 137 ~~~fD~Ii~~~~~~~~~--------~~~-----------~~l~~l~~~l~pgG~l~i~~ 176 (232)
-++.|++|.+..+.... ++. .+.+.+..+|+++|+++...
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 35799999877664221 111 23344455557788887764
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=82.23 E-value=1.5 Score=33.30 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=54.6
Q ss_pred cCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchhH-HHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 64 FHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISPV-MPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 64 ~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~~-~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
+.++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++. ++.+...+..... ...++.....|+.+......
T Consensus 2 L~gK--~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (274)
T d1xhla_ 2 FSGK--SVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGV-PAEKINAVVADVTEASGQDDIINT 77 (274)
T ss_dssp CTTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCC--EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-CCcceEEEEeeCCCHHHHHHHHHH
Confidence 3677 88888988775 4456667798 9999999873 6666665554431 12357888888877653211
Q ss_pred ---CCCCccEEEEccc
Q 026858 136 ---LKPPFDLVIAADV 148 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~ 148 (232)
.-++.|+++.+..
T Consensus 78 ~~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 78 TLAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCceEEEeecc
Confidence 2357899997654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=81.60 E-value=1.5 Score=33.33 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=55.8
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCcccc----
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQIN---- 134 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~---- 134 (232)
.+.++ ++|=-|++.|+ ++..+++.|+ +|+.+|.++ .++.+.+.+..... ...++.....|+.+.....
T Consensus 2 rL~gK--~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~ 77 (272)
T d1xkqa_ 2 RFSNK--TVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGV-SEKQVNSVVADVTTEDGQDQIIN 77 (272)
T ss_dssp TTTTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCC--EEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CCCceEEEEccCCCHHHHHHHHH
Confidence 45778 89999988775 4466677798 999999987 36666665544321 1245788888887765321
Q ss_pred ---cCCCCccEEEEcccC
Q 026858 135 ---ALKPPFDLVIAADVV 149 (232)
Q Consensus 135 ---~~~~~fD~Ii~~~~~ 149 (232)
...++.|++|.+...
T Consensus 78 ~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 78 STLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCceEEEeCCcc
Confidence 123579999976443
|
| >d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-Grasp (ubiquitin-like) superfamily: 2Fe-2S ferredoxin-like family: 2Fe-2S ferredoxin domains from multidomain proteins domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain species: Hydrogenophaga pseudoflava [TaxId: 47421]
Probab=81.52 E-value=2.2 Score=26.17 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=24.5
Q ss_pred ceEEEeecCeeEEEEEcCCCCCccceeechHHHHHHHHhhhCC
Q 026858 7 PVIELPIRDALLSIQQDNGSMHVGTSVWPCSLVLAKFVERWAP 49 (232)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~L~~~l~~~~~ 49 (232)
+.|++.++|++.++.-+++ ..|.+||+....
T Consensus 2 ~~i~~~vNG~~~~~~v~~~------------~~Ll~~LR~~~g 32 (79)
T d1ffva2 2 KIITVNVNGKAQEKAVEPR------------TLLIHFLREELN 32 (79)
T ss_dssp EEEEEEETTEEEEEEECTT------------CBHHHHHHHTSC
T ss_pred cEEEEEECCEEEEEeCCCC------------CCHHHHHhhhcC
Confidence 4689999999999976655 238899988766
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=81.35 E-value=3.3 Score=31.01 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh--HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc----
Q 026858 65 HSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP--VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA---- 135 (232)
Q Consensus 65 ~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~--~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~---- 135 (232)
.++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++ .++.....+.... ..++.+...|+.+.+....
T Consensus 3 ~gK--~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 3 KGK--VAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQH---GVKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp TTC--EEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHH---TSCEEEECCCTTSHHHHHHHHHH
T ss_pred CcC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHHHHHHH
Confidence 466 78877887765 4456677798 999999874 2444444433321 2346778888877653211
Q ss_pred ---CCCCccEEEEcccCC
Q 026858 136 ---LKPPFDLVIAADVVY 150 (232)
Q Consensus 136 ---~~~~fD~Ii~~~~~~ 150 (232)
.-++.|++|.+....
T Consensus 77 ~~~~~G~iDiLVnnAG~~ 94 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp HHHHHSCCSEEEECCCCC
T ss_pred HHHHhCCCcEEEeecccc
Confidence 136799999766553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.14 E-value=2.5 Score=29.99 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=52.3
Q ss_pred cEEEeCc-cc-cHHHHHHHHh-CCCcEEEEcchhHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc----ccCCCCccE
Q 026858 70 RAIELGA-GC-GAAGMAFYLL-GLADIVLTDISPVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI----NALKPPFDL 142 (232)
Q Consensus 70 ~VLElGc-Gt-G~~s~~la~~-~~~~v~~~D~s~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~----~~~~~~fD~ 142 (232)
+||=.|+ |. |..++.+|+. |+..+++++.++. ....-....+.+ ...+....... ......+|+
T Consensus 33 tVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e--~~~~l~~~~gad-------~vi~~~~~~~~~~~~~~~~~GvDv 103 (187)
T d1vj1a2 33 TMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQE--KCLFLTSELGFD-------AAVNYKTGNVAEQLREACPGGVDV 103 (187)
T ss_dssp EEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHH--HHHHHHHHSCCS-------EEEETTSSCHHHHHHHHCTTCEEE
T ss_pred EEEEECCCchhhHHHHHHHHHcCCcceecccchHH--HHhhhhhcccce-------EEeeccchhHHHHHHHHhccCceE
Confidence 7998884 44 8888988886 8766777666541 111111122211 12222222211 112346999
Q ss_pred EEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 143 VIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 143 Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
|+-+ +. ...+....++++++|+++.+
T Consensus 104 v~D~--vG-----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 104 YFDN--VG-----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEES--SC-----HHHHHHHHTTEEEEEEEEEC
T ss_pred EEec--CC-----chhHHHHhhhccccccEEEe
Confidence 9843 32 34677889999999999875
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.99 E-value=9.8 Score=29.01 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=27.4
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcch
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDIS 99 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s 99 (232)
++.++ ++|=-|++.|+ ++..+++.|+ +|+.+|.+
T Consensus 4 ~l~gK--valITGas~GIG~aiA~~la~~Ga-~Vvi~d~~ 40 (302)
T d1gz6a_ 4 RFDGR--VVLVTGAGGGLGRAYALAFAERGA-LVVVNDLG 40 (302)
T ss_dssp CCTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred CcCCC--EEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 56788 99999999886 4566677798 99999865
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=80.93 E-value=5.7 Score=27.94 Aligned_cols=101 Identities=10% Similarity=0.025 Sum_probs=50.4
Q ss_pred ccCCCCCcEEEeCccc---cHHHHHHHHh-CCCcEEEEcch-hHHHHHHHHHHhcCCCCCCceEEEEeecCCCccc----
Q 026858 63 DFHSTRRRAIELGAGC---GAAGMAFYLL-GLADIVLTDIS-PVMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQI---- 133 (232)
Q Consensus 63 ~~~~~~~~VLElGcGt---G~~s~~la~~-~~~~v~~~D~s-~~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~---- 133 (232)
..++. +||=+.+|+ |..++.+|+. |+ +++++--+ +..+.....++..+... .+.....++......
T Consensus 26 ~~~g~--~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~--vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 26 LTPGK--DWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ--VITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp CCTTT--CEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE--EEEHHHHHCGGGHHHHHHH
T ss_pred CCCCC--EEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE--EEeccccchhHHHHHHHHH
Confidence 44667 788774443 5566677765 88 77666322 22333333333333220 011111111111000
Q ss_pred -ccCCCCccEEEEcccCCCcccHHHHHHHHHHhhCCCcEEEEE
Q 026858 134 -NALKPPFDLVIAADVVYIEESAAQLVRAMEALVADDGVVLLG 175 (232)
Q Consensus 134 -~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~pgG~l~i~ 175 (232)
....+.+|+|+- ++. .+.+....++|+++|+++..
T Consensus 101 ~~~~g~~vdvv~D--~vg-----~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 101 IKQSGGEAKLALN--CVG-----GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHTCCEEEEEE--SSC-----HHHHHHHHHTSCTTCEEEEC
T ss_pred HhhccCCceEEEE--CCC-----cchhhhhhhhhcCCcEEEEE
Confidence 011245888883 332 33556778999999999875
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.48 E-value=1.6 Score=33.01 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=54.7
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCCCCCCceEEEEeecCCCccccc---
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKPVLNKSLKTSVLYWNNQDQINA--- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~~~~~~i~~~~~d~~~~~~~~~--- 135 (232)
.+.++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++ .++.+...+..... ...++.+...|+.+......
T Consensus 2 rl~gK--valVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~-~~~~~~~~~~Dvt~~~~v~~~~~ 77 (264)
T d1spxa_ 2 RFAEK--VAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGV-SEQNVNSVVADVTTDAGQDEILS 77 (264)
T ss_dssp TTTTC--EEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCC--EEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CcCceEEEEccCCCHHHHHHHHH
Confidence 35778 88888888766 4456677798 999999987 35666655544331 12357888888877653211
Q ss_pred ----CCCCccEEEEcccC
Q 026858 136 ----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 ----~~~~fD~Ii~~~~~ 149 (232)
.-++.|++|.+...
T Consensus 78 ~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 78 TTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHHHSCCCEEEECCC-
T ss_pred HHHHHhCCCCEeeccccc
Confidence 23679999976543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.28 E-value=2.4 Score=32.62 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=56.2
Q ss_pred ccCCCCCcEEEeCccccH---HHHHHHHhCCCcEEEEcchh-HHHHHHHHHHhcCC-CCCCceEEEEeecCCCccccc--
Q 026858 63 DFHSTRRRAIELGAGCGA---AGMAFYLLGLADIVLTDISP-VMPALKHNLKRNKP-VLNKSLKTSVLYWNNQDQINA-- 135 (232)
Q Consensus 63 ~~~~~~~~VLElGcGtG~---~s~~la~~~~~~v~~~D~s~-~~~~~~~n~~~~~~-~~~~~i~~~~~d~~~~~~~~~-- 135 (232)
...++ .+|=-|++.|+ ++..+++.|+ +|+.+|.++ .+......+..... ....++.....|+.+.+....
T Consensus 9 ~L~gK--valITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~ 85 (297)
T d1yxma1 9 LLQGQ--VAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLV 85 (297)
T ss_dssp TTTTC--EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCC--EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHH
Confidence 35778 89988988776 3455667798 999999987 35555555544332 234567888888887653211
Q ss_pred -----CCCCccEEEEcccC
Q 026858 136 -----LKPPFDLVIAADVV 149 (232)
Q Consensus 136 -----~~~~fD~Ii~~~~~ 149 (232)
..++.|++|.+...
T Consensus 86 ~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 86 KSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHhCCeEEEEeeccc
Confidence 23579999976554
|