Citrus Sinensis ID: 026877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATGKFAPCSSVDIERI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHcccccccEEEEEEEEccccEEEEEEcccccccHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccEEEEEccccccccEEEEEccccccEEEEcHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHccccEEEEcccccEEHHHHHHHHHccccccEEEEEEEcccccEEEEEEccccEEcHHHHHHHHcccccccccccHHHHHHHHcccccccccHEEEccccccEEEEEEHHHHcccEEEEcccccccEEEEcHHHHHHHHHHHccccEEEEEcccccccccccccHHHHcccccEEccccccccccccccccccEEcccccEEEEcEEccccccccccc
Coil and Loop (DISEMBL)
MAYSKDQLLARLKDLQIEfsqyehpavMTVEAQAKYVgniggglsknlflkdkkHRFYIVSALADTKVDMKVLSQRlglgkgglrmapeeTMLEILKvplgsvtpfalvNESARDVALLLDKGFkaqercffhplsndmsislNTNDLDKFLKsigrdpayvdleanpavgkdqppdlaafvpsgstvlpdlpdpasavqsaggshvnannnckaatgkfapcssvdieri
Flexible Loop (DISEMBL)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSaladtkvdmKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFhplsndmsisLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNnckaatgkfapcssvdieri
Low Complexity Region (SEG)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATGKFAPCSSVDIERI
Disordered region (IsUnstruct)
********LARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL*******************************************************************
Disordered Region (DISOPRED)
******Q*LARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAV*KDQPPDLAAFVPSGSTVLPDLPDP****************NCKAATGKFAPCSSVDIERI
Disordered Region (DISEMBL)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDP**********HVNANNNCKAATGKFAPCSSVDIERI
Disordered Region (DISPRO)
*AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQ****SHVNANNNCKAATGKFAPCS*V*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATGKFAPCSSVDIERI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q6NRL0	168	Prolyl-tRNA synthetase as	N/A	no	0.692	0.952	0.414	2e-26
A1A4Q2	171	Prolyl-tRNA synthetase as	yes	no	0.675	0.912	0.393	1e-25
A6NEY8	169	Putative prolyl-tRNA synt	yes	no	0.666	0.911	0.392	6e-25
Q9D820	169	Prolyl-tRNA synthetase as	yes	no	0.683	0.934	0.376	3e-24
Q9L4Q7	164	Prolyl-tRNA editing prote	yes	no	0.649	0.914	0.335	3e-16
Q6PFS2	184	Prolyl-tRNA synthetase as	yes	no	0.679	0.853	0.363	3e-15
Q8I5R7	746	Proline--tRNA ligase OS=P	yes	no	0.683	0.211	0.312	2e-14
O60155	716	Putative proline--tRNA li	yes	no	0.528	0.170	0.261	0.0007

>sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Xenopus laevis GN=prorsd1p PE=2 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 95/164 (57%), Gaps = 4/164 (2%)

Query: 5   KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSAL 63
           + +LLA L +L I     EHP V TVE    +V ++GG  SKNLFLKDKK +  ++VS L
Sbjct: 6   RQELLAYLHELDIRPVCAEHPEVFTVEEMMPHVQHLGGAHSKNLFLKDKKKKGLWLVSVL 65

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            D +V++  L+++L LG G LR A E +MLE LKV  G  TP AL  +   DV  +LD  
Sbjct: 66  HDRQVNLNDLAKKLNLGSGNLRFADEASMLEKLKVGQGCATPLALFCDRG-DVQFVLDAQ 124

Query: 124 F--KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
           F     ER +FHP++N  ++ +   +   FLK  G DP  +  +
Sbjct: 125 FLEGGYERVYFHPMTNAATLGMTPQEFVTFLKKTGHDPIIIHFD 168

Xenopus laevis (taxid: 8355)

>sp|A1A4Q2|PRXD1_BOVIN Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Bos taurus GN=PRORSD1 PE=2 SV=1

 Score =  116 bits (290), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 4/160 (2%)

Query: 11  RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
           RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct: 13  RLAALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query: 70  MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQ 127
           +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct: 73  LNDLAKQLGVGSGNLRFADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
           E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ + N
Sbjct: 132 EKVYFHPMTNAATMGLSPEDFLTFVKNTGHDPIILNFDKN 171

Bos taurus (taxid: 9913)

>sp|A6NEY8|PRXD1_HUMAN Putative prolyl-tRNA synthetase associated domain-containing protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3

 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 11  RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
           RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct: 13  RLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQIN 72

Query: 70  MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQ 127
           +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct: 73  LNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGH 131

Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
           E+ +FHP++N  ++ L+  D   F+K  G DP  ++ +
Sbjct: 132 EKVYFHPMTNAATMGLSPEDFLTFVKMTGHDPIILNFD 169

Homo sapiens (taxid: 9606)

>sp|Q9D820|PRXD1_MOUSE Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Mus musculus GN=Prorsd1 PE=2 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 4/162 (2%)

Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALAD 65
           +L  RL  L I     EHP V T+E    ++ ++ G  SKNLFLKDKK + +++V+ L D
Sbjct: 9   ELEQRLGALAIRTEVVEHPEVFTIEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHD 68

Query: 66  TKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF- 124
            ++++  L ++LG+G G LR A E  MLE LKV  G  TP +L  +   DV  +LD  F 
Sbjct: 69  RQINLNDLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFL 127

Query: 125 -KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
               E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ +
Sbjct: 128 EGGHEKVYFHPMTNAATMGLSPEDFLIFVKATGHDPIILNFD 169

Mus musculus (taxid: 10090)

>sp|Q9L4Q7|PROX_CLOSD Prolyl-tRNA editing protein ProX OS=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) GN=proX PE=1 SV=1

 Score = 85.1 bits (209), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 5/155 (3%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKY-VGNIGGGLSKNLFLKDKKHR-FYIVS 61
           +K  ++A+L +L+I ++  EH  V T+E   K  + N+   + KNLFL+D K R  Y+V 
Sbjct: 5   AKQAVIAKLDELKINYTLIEHDPVYTIEEMEKIDIENVDY-IVKNLFLRDAKGRQHYLVV 63

Query: 62  ALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLD 121
           A  D K+D+K L  ++G  K  L  A E+ + + LK+  G+V+PF ++N+   +V ++ D
Sbjct: 64  ADKDQKIDLKTLQDKIGSTK--LSFASEDRLQKYLKLTKGAVSPFGVLNDETAEVEVVFD 121

Query: 122 KGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIG 156
           K    +     HP  N  ++ L+  DL+K +K+ G
Sbjct: 122 KNLVGRSCVAVHPNDNSATVVLSYEDLEKIVKANG 156

Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has weak activity on correctly charged tRNA(Ala), tRNA(Gly) as well as tRNA(Cys), tRNA(Met), tRNA(Pro), tRNA(Ser) and tRNA(Leu).

Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) (taxid: 499177)

>sp|Q6PFS2|PRXD1_DANRE Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Danio rerio GN=Prorsd1 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 8/165 (4%)

Query: 5   KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALA 64
           + +L   LK L IE +  EHP V TVE    +V ++ G ++KNLFLKDKK R ++V    
Sbjct: 24  RKELEEFLKRLNIETTCIEHPEVFTVEEMMPHVSHLSGVVTKNLFLKDKKRRVFLVCVRH 83

Query: 65  DTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK-- 122
           D  + +  LS+R  LG   LR+A E  +LE L+V  G VTP AL  ++ R V  +LD+  
Sbjct: 84  DRPLALGELSRR--LGAPNLRLAEERLLLEKLRVRQGCVTPLALFLDTERSVTAVLDREL 141

Query: 123 --GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             G      C  HP++N  ++ +   DL +FL+     P  +  +
Sbjct: 142 THGGHTHIHC--HPMTNSATMGITPADLLRFLEETQHTPVILSFD 184

Danio rerio (taxid: 7955)

>sp|Q8I5R7|SYP_PLAF7 Proline--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) GN=proRS PE=1 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 2/160 (1%)

Query: 8   LLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTK 67
           L   LK+L I F + +H    T++   +        + KNLFLKDKK  ++++  L +  
Sbjct: 22  LFKELKELNINFKEVKHGLAATIKDLLEMNLENSTNILKNLFLKDKKKNYFLICTLNNKT 81

Query: 68  VDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQ 127
           VD+K LS  L      LR   E  +  IL +  G ++P A+ N+    V L  D+  K  
Sbjct: 82  VDLKNLSNILK--TNNLRFVDENNLNNILNIQPGCLSPLAIKNDKENIVKLYFDEEIKNM 139

Query: 128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
           +    HPL N  S+ + T D+ KF +S    P YV ++ +
Sbjct: 140 QEVIIHPLHNYSSLYIKTQDVIKFCESFNHAPEYVQIKED 179

Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro) (By similarity). Functions in trans to edit the amino acid moiety from incorrectly charged Ala-tRNA(Pro). Has no activity on correctly charged Pro-tRNA(Pro) or Ala-tRNA(Ala).

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O60155|YHY6_SCHPO Putative proline--tRNA ligase C19C7.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C7.06 PE=3 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)

Query: 43  GLSKNLFLKDKKHRF-----YIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILK 97
            L+K + LK K  +       I++AL  T     + ++ +G  +   RMA  + + E+  
Sbjct: 46  ALTKTIVLKPKTAKSQTVVPIILAALETTSTPSGIAAKAVGSKEA--RMAAADLVEEVFG 103

Query: 98  VPLGSVTPFALVNESARDVALLLDKGFKAQERCF-FHPLSNDMSISLNTNDLDKFLKSIG 156
           +P   V  F++  E+A  V ++LD           FHP S+  ++ ++   +  +LKS+G
Sbjct: 104 IPPTDVGIFSVNKENASKVHVVLDAALIQHNGLLAFHPSSSAKTVFVSPAAVQTYLKSVG 163

Query: 157 RDPAYVDLEA 166
            +P  VD  A
Sbjct: 164 VNPIIVDFSA 173

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
224084860	287	predicted protein [Populus trichocarpa]	0.956	0.770	0.773	3e-95
356515866	322	PREDICTED: uncharacterized protein LOC10	0.974	0.698	0.730	2e-90
255635195	230	unknown [Glycine max]	0.974	0.978	0.725	8e-90
255545452	321	conserved hypothetical protein [Ricinus	0.948	0.682	0.739	3e-88
356552652	320	PREDICTED: prolyl-tRNA synthetase associ	0.909	0.656	0.738	1e-87
449449737	323	PREDICTED: prolyl-tRNA synthetase associ	0.978	0.699	0.682	3e-86
449524730	323	PREDICTED: proline--tRNA ligase-like [Cu	0.978	0.699	0.682	3e-86
359492751	320	PREDICTED: prolyl-tRNA synthetase associ	0.943	0.681	0.712	1e-85
217075807	329	unknown [Medicago truncatula]	0.857	0.601	0.79	3e-82
357461571	378	hypothetical protein MTR_3g072620 [Medic	0.857	0.523	0.79	5e-82

>gi|224084860|ref|XP_002307426.1| predicted protein [Populus trichocarpa] gi|222856875|gb|EEE94422.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 171/221 (77%), Positives = 191/221 (86%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M ++K QLLARLK+LQI FSQYEHP V+TVEAQAKYVG+ GGGLSKNLFLKDKK RFYIV
Sbjct: 1   MGFTKQQLLARLKELQINFSQYEHPTVLTVEAQAKYVGDKGGGLSKNLFLKDKKSRFYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALADTKVDMKVLSQRLGLGKGG+RMAPEE + EIL+VPLG VTPFALVNESAR V+LLL
Sbjct: 61  SALADTKVDMKVLSQRLGLGKGGIRMAPEEALGEILQVPLGCVTPFALVNESARHVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           DKGF++QE CFFHPLSNDMSI+LN  DLDKFLKSIGRDP+Y+DLEANP VGKDQPPDLA+
Sbjct: 121 DKGFQSQEHCFFHPLSNDMSIALNACDLDKFLKSIGRDPSYIDLEANPTVGKDQPPDLAS 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATGKFA 221
           FVPSGST+ PD PD A+ +Q    + +  N    AATGK A
Sbjct: 181 FVPSGSTIQPDQPDKAAPLQDPTENSLPVNKKSVAATGKAA 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515866|ref|XP_003526618.1| PREDICTED: uncharacterized protein LOC100817904 [Glycine max]

 Score =  337 bits (865), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 165/226 (73%), Positives = 189/226 (83%), Gaps = 1/226 (0%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M +SK+QLLARLK+LQ+ FSQYEHP V+TV+AQA+YVG++GGGLSKNLFLKDKK R YIV
Sbjct: 1   MGFSKEQLLARLKELQVPFSQYEHPVVLTVDAQAQYVGHLGGGLSKNLFLKDKKSRLYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALA TKVD+KVLSQRLGLGKGGLRMAPEE + E+L+VPLG VTPFALVNESARDV+LLL
Sbjct: 61  SALAGTKVDLKVLSQRLGLGKGGLRMAPEEALGEVLQVPLGCVTPFALVNESARDVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK+Q+ CFFHPLSNDMSISLN  DLDKFLKSIGR+P+YVDLE NP VGKDQPPDLAA
Sbjct: 121 DQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKSIGRNPSYVDLETNPTVGKDQPPDLAA 180

Query: 181 FVPSGSTVLPDLPDPASAVQ-SAGGSHVNANNNCKAATGKFAPCSS 225
            VPSGS VLPD P   S+ Q     +HV+ +N     + K    SS
Sbjct: 181 LVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGANTVSAKVVKPSS 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635195|gb|ACU17953.1| unknown [Glycine max]

 Score =  335 bits (859), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 189/226 (83%), Gaps = 1/226 (0%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M +SK+QLLARLK+LQ+ FSQYEHP V+TV+AQA+YVG++GGGLSKNLFLKDKK R YIV
Sbjct: 1   MGFSKEQLLARLKELQVPFSQYEHPVVLTVDAQAQYVGHLGGGLSKNLFLKDKKSRLYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALA TKV++KVLSQRLGLGKGGLRMAPEE + E+L+VPLG VTPFALVNESARDV+LLL
Sbjct: 61  SALAGTKVELKVLSQRLGLGKGGLRMAPEEALGEVLQVPLGCVTPFALVNESARDVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK+Q+ CFFHPLSNDMSISLN  DLDKFLKSIGR+P+YVDLE NP VGKDQPPDLAA
Sbjct: 121 DQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKSIGRNPSYVDLETNPTVGKDQPPDLAA 180

Query: 181 FVPSGSTVLPDLPDPASAVQ-SAGGSHVNANNNCKAATGKFAPCSS 225
            VPSGS VLPD P   S+ Q     +HV+ +N     + K    SS
Sbjct: 181 LVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGANTVSAKVVKPSS 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545452|ref|XP_002513786.1| conserved hypothetical protein [Ricinus communis] gi|223546872|gb|EEF48369.1| conserved hypothetical protein [Ricinus communis]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 162/219 (73%), Positives = 183/219 (83%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M Y KDQLLARLK+LQI+F QYEHP V+TVE QAKYVG+ GGGLSKNLFLKDKK RFYIV
Sbjct: 1   MGYGKDQLLARLKELQIDFVQYEHPTVLTVEEQAKYVGDKGGGLSKNLFLKDKKSRFYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SAL DTKVDMKVLSQRLGLGKGG+RMAPEE + EIL+VPLG VTPFA++NESAR V+LLL
Sbjct: 61  SALEDTKVDMKVLSQRLGLGKGGIRMAPEEALAEILQVPLGCVTPFAVMNESARHVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           DKGF AQE CFFHPLSN+MSISL+  DLDKFLKSIGR+P+YVDLEANP VGKDQPPDLA 
Sbjct: 121 DKGFIAQEYCFFHPLSNNMSISLHARDLDKFLKSIGREPSYVDLEANPPVGKDQPPDLAI 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATGK 219
           FVPS ST+L D P   + +Q    + ++A+    AA  K
Sbjct: 181 FVPSDSTILSDPPQKEAPLQGHNKNPISADKKSIAAAVK 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552652|ref|XP_003544677.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Glycine max]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/210 (73%), Positives = 180/210 (85%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M +SK+QLLARLK+L I FSQYEHPA++TVE   KYVG++GGG+SKNLFLKDKK RFY+V
Sbjct: 1   MGFSKEQLLARLKELLINFSQYEHPAILTVEEGEKYVGHLGGGVSKNLFLKDKKQRFYLV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SAL DTKVD+KVLSQRLGLGKGGLRM P E + EIL+V LG VTPFA+VNESARDV+LLL
Sbjct: 61  SALKDTKVDIKVLSQRLGLGKGGLRMVPSEALGEILQVSLGCVTPFAVVNESARDVSLLL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK QE CFFHPLSNDM+IS+N+NDLDKFLKSIGRDP+YVD EANP VGKDQPPDLAA
Sbjct: 121 DQGFKTQEFCFFHPLSNDMTISINSNDLDKFLKSIGRDPSYVDFEANPPVGKDQPPDLAA 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNAN 210
            VPSG+  LPD P+   + Q   G+HV+ +
Sbjct: 181 LVPSGTINLPDQPEKQPSSQPTEGNHVSVD 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449737|ref|XP_004142621.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Cucumis sativus]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 191/227 (84%), Gaps = 1/227 (0%)

Query: 3   YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSA 62
           Y+++ LL+ L+DLQ++FS+YEHPAV+TVEAQAKYVGN+GGGLSKNLFLKDKK+R+YIVSA
Sbjct: 6   YTREHLLSLLQDLQVDFSRYEHPAVLTVEAQAKYVGNLGGGLSKNLFLKDKKNRYYIVSA 65

Query: 63  LADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK 122
           LADTKVD+KVLS RLGLGKGGLRMAPEE + E LKV LG VTPFAL+N++ARDVALLLD+
Sbjct: 66  LADTKVDLKVLSVRLGLGKGGLRMAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQ 125

Query: 123 GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFV 182
           GFK QE CFFHPLSN+ SIS+NT++LDKFL+SIGRDP+YVDLEANP+VGKDQPPDLA  V
Sbjct: 126 GFKGQEFCFFHPLSNETSISINTSNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLV 185

Query: 183 PSGSTVLPDLPDPASAVQSAGGSHVNANNNCKA-ATGKFAPCSSVDI 228
           PS S+++PD P+  S+   +  +H   +   KA A     P ++V +
Sbjct: 186 PSVSSLVPDTPEKVSSHPDSNENHGVTDKKSKAVAANTVKPSTTVKV 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524730|ref|XP_004169374.1| PREDICTED: proline--tRNA ligase-like [Cucumis sativus]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 191/227 (84%), Gaps = 1/227 (0%)

Query: 3   YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSA 62
           Y+++ LL+ L+DLQ++FS+YEHPAV+TVEAQAKYVGN+GGGLSKNLFLKDKK+R+YIVSA
Sbjct: 6   YTREHLLSLLQDLQVDFSRYEHPAVLTVEAQAKYVGNLGGGLSKNLFLKDKKNRYYIVSA 65

Query: 63  LADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK 122
           LADTKVD+KVLS RLGLGKGGLRMAPEE + E LKV LG VTPFAL+N++ARDVALLLD+
Sbjct: 66  LADTKVDLKVLSVRLGLGKGGLRMAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQ 125

Query: 123 GFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFV 182
           GFK QE CFFHPLSN+ SIS+NT++LDKFL+SIGRDP+YVDLEANP+VGKDQPPDLA  V
Sbjct: 126 GFKGQEFCFFHPLSNETSISINTSNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLV 185

Query: 183 PSGSTVLPDLPDPASAVQSAGGSHVNANNNCKA-ATGKFAPCSSVDI 228
           PS S+++PD P+  S+   +  +H   +   KA A     P ++V +
Sbjct: 186 PSVSSLVPDTPEKVSSRPDSNENHGVTDKKSKAVAANTVKPSTTVKV 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492751|ref|XP_002284446.2| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Vitis vinifera] gi|302141840|emb|CBI19043.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/219 (71%), Positives = 180/219 (82%), Gaps = 1/219 (0%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M +SKDQLLARL++LQI+F++YEHPAV+TVEAQ KYVG++GGGLSKNLFLKDKKHRFYIV
Sbjct: 1   MGHSKDQLLARLQELQIDFTKYEHPAVLTVEAQEKYVGHLGGGLSKNLFLKDKKHRFYIV 60

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SAL DTKVD+KVLSQRLGLGKGGLRMAPEE + EIL+V LG VTPFALVNESAR V+L L
Sbjct: 61  SALKDTKVDLKVLSQRLGLGKGGLRMAPEEALGEILQVSLGCVTPFALVNESARHVSLFL 120

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK ++ CFFHPLSNDMSI++   DLDKFLKSIG+DP+YVDLEANP VGKDQPPDLA 
Sbjct: 121 DQGFKTKDFCFFHPLSNDMSIAIKACDLDKFLKSIGKDPSYVDLEANPTVGKDQPPDLAG 180

Query: 181 FVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATGK 219
            VPS + VL D P+  S        H + +N    A  K
Sbjct: 181 LVPSDAIVLQDPPE-KSVSSGPTEKHASVDNKSSVAAAK 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075807|gb|ACJ86263.1| unknown [Medicago truncatula]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 178/200 (89%), Gaps = 2/200 (1%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M  SK+QLL +L++LQIEFS+YEHP V+TVEAQAKYVG+  GGLSKNLFLKDKK+RFYIV
Sbjct: 1   MGLSKEQLLHQLQELQIEFSKYEHPVVLTVEAQAKYVGS--GGLSKNLFLKDKKNRFYIV 58

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALA+TKVD+KVLSQRLGLGKGGLRMAPEE + E+L+VPLG VTPFA+VNESARDV+LLL
Sbjct: 59  SALAETKVDLKVLSQRLGLGKGGLRMAPEEALGELLQVPLGCVTPFAVVNESARDVSLLL 118

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK QE CFFHPLSNDMSISLN   LDKFLKSIGRDP+YVDLEANPAVGKDQPPDLAA
Sbjct: 119 DQGFKTQEHCFFHPLSNDMSISLNVRGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAA 178

Query: 181 FVPSGSTVLPDLPDPASAVQ 200
            VPS S +LPD P   S+ +
Sbjct: 179 LVPSSSIILPDQPGKQSSTE 198

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461571|ref|XP_003601067.1| hypothetical protein MTR_3g072620 [Medicago truncatula] gi|355490115|gb|AES71318.1| hypothetical protein MTR_3g072620 [Medicago truncatula]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 158/200 (79%), Positives = 178/200 (89%), Gaps = 2/200 (1%)

Query: 1   MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
           M  SK+QLL +L++LQIEFS+YEHP V+TVEAQAKYVG+  GGLSKNLFLKDKK+RFYIV
Sbjct: 50  MGLSKEQLLHQLQELQIEFSKYEHPVVLTVEAQAKYVGS--GGLSKNLFLKDKKNRFYIV 107

Query: 61  SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
           SALA+TKVD+KVLSQRLGLGKGGLRMAPEE + E+L+VPLG VTPFA+VNESARDV+LLL
Sbjct: 108 SALAETKVDLKVLSQRLGLGKGGLRMAPEEALGELLQVPLGCVTPFAVVNESARDVSLLL 167

Query: 121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
           D+GFK QE CFFHPLSNDMSISLN   LDKFLKSIGRDP+YVDLEANPAVGKDQPPDLAA
Sbjct: 168 DQGFKTQEHCFFHPLSNDMSISLNVRGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAA 227

Query: 181 FVPSGSTVLPDLPDPASAVQ 200
            VPS S +LPD P   S+ +
Sbjct: 228 LVPSSSIILPDQPGKQSSTE 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2826697	308	AT1G44835 "AT1G44835" [Arabido	0.865	0.649	0.72	7.3e-75
UNIPROTKB|F1NDD4	189	LOC421212 "Uncharacterized pro	0.692	0.846	0.445	7.9e-30
UNIPROTKB|F1SQK5	171	LOC100514282 "Uncharacterized	0.675	0.912	0.393	1.8e-25
UNIPROTKB|A1A4Q2	171	PRORSD1 "Prolyl-tRNA synthetas	0.675	0.912	0.393	2.2e-25
UNIPROTKB|E2R3A2	172	E2R3A2 "Uncharacterized protei	0.675	0.906	0.387	9.7e-25
UNIPROTKB|F6Y5M8	171	LOC100856725 "Uncharacterized	0.675	0.912	0.387	9.7e-25
UNIPROTKB|A6NEY8	169	PRORSD1P "Putative prolyl-tRNA	0.666	0.911	0.392	1.2e-24
RGD|1308179	169	Prorsd1 "prolyl-tRNA synthetas	0.666	0.911	0.398	1.6e-24
MGI|MGI:1915189	169	Prorsd1 "prolyl-tRNA synthetas	0.683	0.934	0.376	3.3e-24
ZFIN|ZDB-GENE-040426-1402	184	zgc:64201 "zgc:64201" [Danio r	0.649	0.815	0.373	4.4e-20

TAIR|locus:2826697 AT1G44835 "AT1G44835" [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
 Identities = 144/200 (72%), Positives = 171/200 (85%)

Query:     1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIV 60
             M ++KDQLL RL++L+I++S+YEHP V+TVE QAKYV +  G LSKNLFLKDKKHR+YIV
Sbjct:     1 MGFTKDQLLDRLQELEIDYSKYEHPPVLTVEEQAKYVSSSKGALSKNLFLKDKKHRYYIV 60

Query:    61 SALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLL 120
             SA+ DTKVDMKVLSQRLGLGKGG+RMAPEE + E+L+V LG VTPFA+VNESARDV+LLL
Sbjct:    61 SAMVDTKVDMKVLSQRLGLGKGGIRMAPEEALGELLQVSLGCVTPFAVVNESARDVSLLL 120

Query:   121 DKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAA 180
             D+ FK Q RC FHPLSND+S+SLNT  LDKFLKSIGRDP YVDLEANP VGKDQ PDLA 
Sbjct:   121 DQKFKNQTRCIFHPLSNDVSVSLNTLGLDKFLKSIGRDPVYVDLEANPVVGKDQAPDLAV 180

Query:   181 FVPSGSTVLPDLPDPASAVQ 200
              VPS S ++P++P+  S+ Q
Sbjct:   181 CVPSNSVIVPEIPNQTSSTQ 200

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1NDD4 LOC421212 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 73/164 (44%), Positives = 102/164 (62%)

Query:     5 KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSAL 63
             ++ L  RL+DL I  +  EHP V TVE    +V ++ GG SKNLFLKDKK + F++V+ L
Sbjct:    23 REALEQRLRDLGIAATTTEHPEVFTVEEMMAHVQHLKGGHSKNLFLKDKKRKEFWLVTVL 82

Query:    64 ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
              D +VD+  L+++LG+G G LR A E  MLE L+V  G  TP AL  +   DV L+LD G
Sbjct:    83 HDRQVDLNHLAKKLGVGSGNLRFADENAMLEKLQVGQGCATPLALFCDHG-DVRLVLDAG 141

Query:   124 FK--AQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             F     E+ +FHP++N  ++ L+  D  KF+KS G DP  V  +
Sbjct:   142 FLEGGHEKVYFHPMTNGATMGLSPEDFLKFVKSTGHDPIVVHFD 185

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F1SQK5 LOC100514282 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 63/160 (39%), Positives = 94/160 (58%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLSALAIRTEIVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADETAMLEKLKVVQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ + N
Sbjct:   132 EKVYFHPMTNTATMGLSPEDFLTFVKNTGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A1A4Q2 PRORSD1 "Prolyl-tRNA synthetase associated domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 63/160 (39%), Positives = 94/160 (58%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLAALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ + N
Sbjct:   132 EKVYFHPMTNAATMGLSPEDFLTFVKNTGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|E2R3A2 E2R3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/160 (38%), Positives = 92/160 (57%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLGALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  ML+ LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADETAMLDKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K  G DP  +  + N
Sbjct:   132 EKVYFHPMTNSATMGLSPEDFLTFVKKTGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F6Y5M8 LOC100856725 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 62/160 (38%), Positives = 92/160 (57%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLGALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKGYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  ML+ LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNDLAKQLGVGSGNLRFADETAMLDKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEAN 167
             E+ +FHP++N  ++ L+  D   F+K  G DP  +  + N
Sbjct:   132 EKVYFHPMTNSATMGLSPEDFLTFVKKTGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A6NEY8 PRORSD1P "Putative prolyl-tRNA synthetase associated domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 62/158 (39%), Positives = 92/158 (58%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + +++V+ L D +++
Sbjct:    13 RLGALAIHTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L+++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNELAKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             E+ +FHP++N  ++ L+  D   F+K  G DP  ++ +
Sbjct:   132 EKVYFHPMTNAATMGLSPEDFLTFVKMTGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

RGD|1308179 Prorsd1 "prolyl-tRNA synthetase associated domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 63/158 (39%), Positives = 91/158 (57%)

Query:    11 RLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFY-IVSALADTKVD 69
             RL  L I     EHP V TVE    ++ ++ G  SKNLFLKDKK + Y +V+ L D +++
Sbjct:    13 RLGALAIRTEVVEHPEVFTVEEMMPHIQHLKGAHSKNLFLKDKKKKSYWLVTVLHDRQIN 72

Query:    70 MKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQ 127
             +  L ++LG+G G LR A E  MLE LKV  G  TP AL  +   DV  +LD  F     
Sbjct:    73 LNHLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGH 131

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
             E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ +
Sbjct:   132 EKVYFHPMTNAATMGLSPEDFLVFVKATGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

MGI|MGI:1915189 Prorsd1 "prolyl-tRNA synthetase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 61/162 (37%), Positives = 94/162 (58%)

Query:     7 QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHR-FYIVSALAD 65
             +L  RL  L I     EHP V T+E    ++ ++ G  SKNLFLKDKK + +++V+ L D
Sbjct:     9 ELEQRLGALAIRTEVVEHPEVFTIEEMMPHIQHLKGAHSKNLFLKDKKKKNYWLVTVLHD 68

Query:    66 TKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK 125
              ++++  L ++LG+G G LR A E  MLE LKV  G  TP +L  +   DV  +LD  F 
Sbjct:    69 RQINLNDLGKQLGVGSGNLRFADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFL 127

Query:   126 --AQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
                 E+ +FHP++N  ++ L+  D   F+K+ G DP  ++ +
Sbjct:   128 EGGHEKVYFHPMTNAATMGLSPEDFLIFVKATGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1402 zgc:64201 "zgc:64201" [Danio rerio (taxid:7955)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 59/158 (37%), Positives = 86/158 (54%)

Query:    12 LKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMK 71
             LK L IE +  EHP V TVE    +V ++ G ++KNLFLKDKK R ++V    D  + + 
Sbjct:    31 LKRLNIETTCIEHPEVFTVEEMMPHVSHLSGVVTKNLFLKDKKRRVFLVCVRHDRPLALG 90

Query:    72 VLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDK----GFKAQ 127
              LS+RLG     LR+A E  +LE L+V  G VTP AL  ++ R V  +LD+    G    
Sbjct:    91 ELSRRLGAPN--LRLAEERLLLEKLRVRQGCVTPLALFLDTERSVTAVLDRELTHGGHTH 148

Query:   128 ERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE 165
               C  HP++N  ++ +   DL +FL+     P  +  +
Sbjct:   149 IHC--HPMTNSATMGITPADLLRFLEETQHTPVILSFD 184

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
cd04335	156	cd04335, PrdX_deacylase, This CD includes bacteria	2e-71
COG3760	164	COG3760, COG3760, Uncharacterized conserved protei	6e-41
pfam04073	122	pfam04073, YbaK, YbaK / prolyl-tRNA synthetases as	3e-31
cd04332	136	cd04332, YbaK_like, YbaK-like	9e-27
COG2606	155	COG2606, EbsC, Uncharacterized conserved protein [	8e-07
cd04336	153	cd04336, YeaK, YeaK is an uncharacterized Echerich	2e-04

>gnl|CDD|239827 cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

 Score =  214 bits (548), Expect = 2e-71
 Identities = 76/158 (48%), Positives = 103/158 (65%), Gaps = 2/158 (1%)

Query: 5   KDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALA 64
           +D+LLA L +L I +   EHP V TVE   + +G + G  +KNLFLKDKK R Y+V+AL 
Sbjct: 1   EDELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFLKDKKGRLYLVTALH 60

Query: 65  DTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF 124
           D KVD+K LS++LG     L  A EE + E L V  GSVTPFAL+N+   DV ++LDK  
Sbjct: 61  DKKVDLKALSKQLGAS--RLSFASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDL 118

Query: 125 KAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV 162
             +ER  FHPL+N  ++ ++T DL KFL++ G +P  V
Sbjct: 119 LEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV 156

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins. Length = 156

>gnl|CDD|226283 COG3760, COG3760, Uncharacterized conserved protein [Function unknown]

 Score =  137 bits (346), Expect = 6e-41
 Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 2/160 (1%)

Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
           +L A L +L I+ +  EHP V TVE        I GG +KNLFLKDKK +F++V+   D 
Sbjct: 7   ELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVTVDEDA 66

Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA 126
            VD+K + + +G  +  L     E ++E L V  GSVT F L+N++   V ++LD+    
Sbjct: 67  VVDLKSIHETIGAAR--LSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMD 124

Query: 127 QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEA 166
            +   FHPLSN  + S+ + DL +FL++ G +P  +D+ A
Sbjct: 125 DDLINFHPLSNTATTSIASADLIRFLEATGHEPRILDVSA 164

Length = 164

>gnl|CDD|217873 pfam04073, YbaK, YbaK / prolyl-tRNA synthetases associated domain

 Score =  111 bits (279), Expect = 3e-31
 Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 6/128 (4%)

Query: 24  HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG 83
           HP V TVE  A+ +G   G ++K L LKDKK R+ +V    D ++D+K L++ LG  +  
Sbjct: 1   HPPVRTVEEAAEALGVPPGRIAKTLVLKDKKGRYVLVVLPGDRELDLKKLAKALGAKR-- 58

Query: 84  LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISL 143
           LR+A EE + E+  V  G+V+PF L    A  V +L+D+              N  ++ L
Sbjct: 59  LRLASEEELAELTGVEPGAVSPFGL----ANGVPVLIDESLLDYPDVVVGAGENGATLEL 114

Query: 144 NTNDLDKF 151
           +  DL K 
Sbjct: 115 SNADLRKL 122

This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligo-nucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA. Length = 122

>gnl|CDD|239824 cd04332, YbaK_like, YbaK-like

 Score =   99 bits (250), Expect = 9e-27
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 18  EFSQYEH-PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQR 76
           E+ +YEH P   T+E  A+ +G   G ++K L LKD K    +V    D ++D+K L++ 
Sbjct: 1   EYLEYEHTPGAKTIEEAAEALGVPPGQIAKTLVLKDDKGGLVLVVVPGDHELDLKKLAKA 60

Query: 77  LGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLS 136
           LG  K  LR+A EE + E+     G V PF L     + V +++D+     E  +     
Sbjct: 61  LGAKK--LRLASEEELEELTGCEPGGVGPFGL----KKGVPVVVDESLLELEDVYVGAGE 114

Query: 137 NDMSISLNTNDLDKFLK 153
               + L+  DL + L 
Sbjct: 115 RGADLHLSPADLLRLLG 131

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX). Length = 136

>gnl|CDD|225326 COG2606, EbsC, Uncharacterized conserved protein [Function unknown]

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 9/147 (6%)

Query: 10  ARLKDLQIEFSQYE---HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
             L   +I F  +     P+ +T    A+ +G     ++K L L   K    +     D 
Sbjct: 6   RLLDKAKIAFEVHVYELDPSALTGAEAAEALGVDPAQVAKTLVLAVDKGGPALAVVPGDQ 65

Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA 126
           ++D+K L++ LG  K    MA  E +  +    +G V+PF       + +   +D+    
Sbjct: 66  RLDLKKLAKALGAKK--AEMADPEEVQRLTGYVVGGVSPFGQ----KKRLPTYIDESALR 119

Query: 127 QERCFFHPLSNDMSISLNTNDLDKFLK 153
            +  +       + + L   DL + L 
Sbjct: 120 FDTIYVSAGKRGLLVELAPQDLAELLG 146

Length = 155

>gnl|CDD|239828 cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 9/145 (6%)

Query: 6   DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK--HRFYIVSAL 63
           ++L   L      F   +HP   T E  A   G   G  +K L  K K    RF +    
Sbjct: 2   ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVLP 61

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
           AD K+D+K ++  +G  K    +A  E   E+    +G+V PF+   +    + L+ D  
Sbjct: 62  ADKKLDLKAVAAAVGGKK--ADLASPEEAEELTGCVIGAVPPFSFDPK----LKLIADPS 115

Query: 124 FKAQ-ERCFFHPLSNDMSISLNTND 147
              + +   F+    D S+ L+T D
Sbjct: 116 LLDRGDEIAFNAGRLDASVVLDTAD 140

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans. Length = 153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
COG3760	164	Uncharacterized conserved protein [Function unknow	100.0
cd04335	156	PrdX_deacylase This CD includes bacterial (Agrobac	100.0
cd04336	153	YeaK YeaK is an uncharacterized Echerichia coli pr	99.98
TIGR00011	152	YbaK_EbsC ybaK/ebsC protein. This model represents	99.98
PRK10670	159	hypothetical protein; Provisional	99.97
cd00002	152	YbaK_deacylase This CD includes cysteinyl-tRNA(Pro	99.97
cd04333	148	ProX_deacylase This CD, composed mainly of bacteri	99.97
PF04073	123	tRNA_edit: Aminoacyl-tRNA editing domain; InterPro	99.96
COG2606	155	EbsC Uncharacterized conserved protein [Function u	99.94
cd04332	136	YbaK_like YbaK-like. The YbaK family of deacylase	99.94
cd04939	139	PA2301 PA2301 is an uncharacterized Pseudomonas ae	99.92
cd04334	160	ProRS-INS INS is an amino acid-editing domain inse	99.9
PRK09194	565	prolyl-tRNA synthetase; Provisional	99.71
TIGR00409	568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	99.29

>COG3760 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.1e-37  Score=245.89  Aligned_cols=164  Identities=38%  Similarity=0.634  Sum_probs=160.3

Q ss_pred             CCCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCC
Q 026877            1 MAYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLG   80 (231)
Q Consensus         1 m~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~k   80 (231)
                      |.++.+++.++|+++||+++.++|||+.|++|...+.+..+++.+||||+++||++|||+.+.++..+|++.+.+.+|.+
T Consensus         1 ~~kt~~el~~lL~eLgI~~~tveHppv~tveEs~~~~~eipgghtKnLfLkdkK~q~~lv~~~e~~~vDLk~ih~~IG~~   80 (164)
T COG3760           1 MMKTEAELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPGGHTKNLFLKDKKDQFFLVTVDEDAVVDLKSIHETIGAA   80 (164)
T ss_pred             CCCCHHHHHHHHHHhCCCcccccCCCceehHHHHHHHhhcCCCccceeEeecCCCCEEEEEecccceecHHHHHHHhcee
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (231)
Q Consensus        81 r~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~  160 (231)
                        +++|+++|.+.+++|+.+|+|++||+.||.+++|++|+|+.+++.+.|.|||.+|+.|.+|..+||.+||+++||+|.
T Consensus        81 --RlsFg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~  158 (164)
T COG3760          81 --RLSFGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPR  158 (164)
T ss_pred             --eeecCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCce
Confidence              599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEccC
Q 026877          161 YVDLEA  166 (231)
Q Consensus       161 ~vd~~~  166 (231)
                      ++|+++
T Consensus       159 il~~~~  164 (164)
T COG3760         159 ILDVSA  164 (164)
T ss_pred             eeeccC
Confidence            999975

>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

Probab=100.00  E-value=5.4e-35  Score=239.47  Aligned_cols=155  Identities=49%  Similarity=0.778  Sum_probs=148.0

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcce
Q 026877            6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLR   85 (231)
Q Consensus         6 ~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr   85 (231)
                      ++++++|+++||.|+.++||++.|+++++++++++.++++|||++++++++++++++|+|+++|++++++.+|.+  +++
T Consensus         2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~~~~~~~Ktlv~~~~~~~~vlv~~~gd~~vn~~kl~~~lg~~--~l~   79 (156)
T cd04335           2 DELLALLDELGIAYETVEHPPVFTVEEADEVLGELPGAHTKNLFLKDKKGRLYLVTALHDKKVDLKALSKQLGAS--RLS   79 (156)
T ss_pred             hHHHHHHHHCCCceEEEecCCcCCHHHHHHhhccCCCceEEEEEEEcCCCCEEEEEEcCCcccCHHHHHHHhCCC--Ccc
Confidence            679999999999999999999999999999999999999999999987668999999999999999999999986  599


Q ss_pred             eCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877           86 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (231)
Q Consensus        86 ~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v  162 (231)
                      ||++|++.++||+.+|+|+|||+.++..+++++|+|+++...+.+|||+|+++.++.|+++||.++++++|+.+.++
T Consensus        80 ~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~  156 (156)
T cd04335          80 FASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV  156 (156)
T ss_pred             cCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence            99999999999999999999999877677899999999999999999999999999999999999999999998774

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.

>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function

Probab=99.98  E-value=4.3e-31  Score=215.22  Aligned_cols=149  Identities=26%  Similarity=0.337  Sum_probs=139.6

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhCCCCCc
Q 026877            6 DQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGG   83 (231)
Q Consensus         6 ~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG~kr~~   83 (231)
                      ++++++|+++||+|+.++|++..|++++++.+|+.+++++|+++|+++++  +++++++|+++++|++++++.+|.+  +
T Consensus         2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll~~~~~~~~~~vlvv~~~~~~v~~~kl~~~~g~~--~   79 (153)
T cd04336           2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALLCKVKDGSRRFVLAVLPADKKLDLKAVAAAVGGK--K   79 (153)
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEEEEecCCCceEEEEEEeCccccCHHHHHHHhCCC--c
Confidence            57999999999999999999999999999999999999999999999765  7999999999999999999999975  5


Q ss_pred             ceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccC-CCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877           84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (231)
Q Consensus        84 lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~-~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v  162 (231)
                      ++||+++++.+++|+.+|+++|||+.+    ++++|+|+++.+ .+.||+|+|+++.++.|+++||.+++.     +.++
T Consensus        80 l~~a~~~~l~~~~g~~~G~v~P~gl~~----~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~-----~~~~  150 (153)
T cd04336          80 ADLASPEEAEELTGCVIGAVPPFSFDP----KLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR-----PLVL  150 (153)
T ss_pred             cccCCHHHHHHHhCCccccCCCCCCCC----CceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEe
Confidence            999999999999999999999999975    799999999999 889999999999999999999999997     4566


Q ss_pred             Ecc
Q 026877          163 DLE  165 (231)
Q Consensus       163 d~~  165 (231)
                      +|+
T Consensus       151 ~~~  153 (153)
T cd04336         151 QFT  153 (153)
T ss_pred             ccC
Confidence            653

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>TIGR00011 YbaK_EbsC ybaK/ebsC protein

Probab=99.98  E-value=3.1e-31  Score=216.38  Aligned_cols=148  Identities=19%  Similarity=0.242  Sum_probs=138.2

Q ss_pred             HHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCc
Q 026877            7 QLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG   83 (231)
Q Consensus         7 ~v~~~L~~~~I~~~~~~h~~~---~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~   83 (231)
                      .+.++|+++||+|++++|++.   .|++++++++|+++++++|+++|+.++++++++++|+|+++|++++++++|.+  +
T Consensus         2 ~~~~~L~~~~i~~~~~~~~~~~~~~t~~e~a~~~g~~~~~~~Ktlv~~~~~~~~~lv~~~gd~~ld~~kl~~~lg~~--~   79 (152)
T TIGR00011         2 NAIRLLDKAKIEYEVHEYEVDPDHLDGESAAEKLGVDPHRVFKTLVAEGDKKGPVVAVIPGDEELDLKKLAKASGGK--K   79 (152)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCcccHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--C
Confidence            578999999999999999875   48899999999999999999999987668999999999999999999999975  5


Q ss_pred             ceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEE
Q 026877           84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD  163 (231)
Q Consensus        84 lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd  163 (231)
                      ++||+++++.+++|+.+|+|+|||+..    ++++|+|+++.+.+.+|+|+|+++.++.|+++||.++++     +.|+|
T Consensus        80 ~~~a~~ee~~~~~g~~~G~v~P~g~~~----~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~-----~~~~~  150 (152)
T TIGR00011        80 AEMADPKDAEKVTGYIRGGISPIGQKK----KFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD-----GTFAD  150 (152)
T ss_pred             cccCCHHHHHHhcCCcccccCCCCcCC----CccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC-----CEEEe
Confidence            999999999999999999999999875    799999999999999999999999999999999999997     67887


Q ss_pred             cc
Q 026877          164 LE  165 (231)
Q Consensus       164 ~~  165 (231)
                      ++
T Consensus       151 i~  152 (152)
T TIGR00011       151 IA  152 (152)
T ss_pred             cC
Confidence            75

This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.

>PRK10670 hypothetical protein; Provisional

Probab=99.97  E-value=2.8e-31  Score=219.23  Aligned_cols=149  Identities=17%  Similarity=0.281  Sum_probs=137.4

Q ss_pred             HHHHHHHhCCCCeEE--EEcCCCCC--HHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhCCC
Q 026877            7 QLLARLKDLQIEFSQ--YEHPAVMT--VEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLG   80 (231)
Q Consensus         7 ~v~~~L~~~~I~~~~--~~h~~~~T--iee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG~k   80 (231)
                      .+.++|++++|+|+.  ++|++..|  .+++|+++|+++.+++|||+++.+++  ++++++++||+++|++++++.+|.+
T Consensus         3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~~~~~~~~~~vl~v~~gd~~ld~~kl~~~lg~~   82 (159)
T PRK10670          3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAK   82 (159)
T ss_pred             HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEEEecCCCceEEEEEEECCceeCHHHHHHHhCCC
Confidence            588999999999998  77987664  49999999999999999999987543  4999999999999999999999986


Q ss_pred             CCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (231)
Q Consensus        81 r~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~  160 (231)
                        +++||++|++.+++||.+|+|||||+.+    ++++|+|+++.+++.+|+++|.++.++.|+++||.++++     ..
T Consensus        83 --~~~~a~~eev~~~tG~~~G~v~P~Gl~~----~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~  151 (159)
T PRK10670         83 --KVEMADPMVAQRSTGYLVGGISPLGQKK----RLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AK  151 (159)
T ss_pred             --CcccCCHHHHHHhhCCccceECccCCCC----CCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CE
Confidence              5999999999999999999999999975    799999999999999999999999999999999999987     67


Q ss_pred             EEEccC
Q 026877          161 YVDLEA  166 (231)
Q Consensus       161 ~vd~~~  166 (231)
                      |+||+.
T Consensus       152 ~~di~~  157 (159)
T PRK10670        152 FADIAR  157 (159)
T ss_pred             EEEEEe
Confidence            999874

>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins

Probab=99.97  E-value=9.4e-30  Score=207.75  Aligned_cols=148  Identities=18%  Similarity=0.257  Sum_probs=136.4

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCC---CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCC
Q 026877            6 DQLLARLKDLQIEFSQYEHPAV---MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG   82 (231)
Q Consensus         6 ~~v~~~L~~~~I~~~~~~h~~~---~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~   82 (231)
                      +.++++|+++||.|+.++|+..   .|++++++.+|+++.+++|+++++.++++++++++|+|+++|++++++.+|.+  
T Consensus         2 ~~~~~~L~~~~i~~~~~~h~~~~~~~t~~e~~~~~~~~~~~~~K~li~~~d~~~~vlv~~~gd~~ld~~kl~~~lg~~--   79 (152)
T cd00002           2 TPAIRLLDKAKIPYELHEYEHDEDASDGLEAAEKLGLDPEQVFKTLVVEGDKKGLVVAVVPVDEELDLKKLAKALGAK--   79 (152)
T ss_pred             CHHHHHHHHcCCCeEEEeecCCCCcCCHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCCC--
Confidence            4689999999999999999743   59999999999999999999999997668999999999999999999999976  


Q ss_pred             cceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877           83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (231)
Q Consensus        83 ~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v  162 (231)
                      +++||+++++.+++|+.+|+|+|||+.+    ++++|+|.++.+.+.+|+|+|+++.++.|+++||.++++     ..|+
T Consensus        80 ~l~~a~~ee~~~~~g~~~G~v~P~~l~~----~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~-----~~~~  150 (152)
T cd00002          80 KVEMAPPKDAERLTGYIRGGISPLGQKK----RLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG-----AKFA  150 (152)
T ss_pred             CcccCCHHHHHHhcCCcccccCccCcCC----CccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC-----CEEe
Confidence            5999999999999999999999999974    799999999999999999999999999999999999987     4566


Q ss_pred             Ec
Q 026877          163 DL  164 (231)
Q Consensus       163 d~  164 (231)
                      |+
T Consensus       151 ~~  152 (152)
T cd00002         151 DI  152 (152)
T ss_pred             cC
Confidence            53

These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.

>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)

Probab=99.97  E-value=3.8e-29  Score=203.18  Aligned_cols=140  Identities=21%  Similarity=0.346  Sum_probs=133.5

Q ss_pred             HHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcc
Q 026877            6 DQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (231)
Q Consensus         6 ~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~l   84 (231)
                      +++.++|++++|.|+.++|+ +..|++++++++|.++++++|++++++++ +++++++|+++++|++++++.+|.   ++
T Consensus         2 ~~~~~~L~~~~i~~~~~~~~~~~~t~~e~a~~~~~~~~~~~K~l~~~~~~-~~~~v~~~~~~~ld~~kl~~~lg~---~l   77 (148)
T cd04333           2 ERVRAFLAARGLDLEVIELPESTRTAALAAEALGCEPGQIAKSLVFRVDD-EPVLVVTSGDARVDNKKFKALFGE---KL   77 (148)
T ss_pred             HHHHHHHHHCCCCCeEEECCCCcchHHHHHHHcCCChhHEEEEEEEEECC-cEEEEEEeCCcccCHHHHHHHhCC---Cc
Confidence            57999999999999999999 58999999999999999999999999965 699999999999999999999997   39


Q ss_pred             eeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHH
Q 026877           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK  153 (231)
Q Consensus        85 r~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~  153 (231)
                      +||+++++.+++||.+|+++|||+..    ++++|+|+++...+.+|+++|+++.++.|+++||.+++.
T Consensus        78 ~~a~~~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~  142 (148)
T cd04333          78 KMADAEEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG  142 (148)
T ss_pred             eeCCHHHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence            99999999999999999999999975    799999999999999999999999999999999999997

While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.

>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms

Probab=99.96  E-value=2.8e-28  Score=191.90  Aligned_cols=122  Identities=31%  Similarity=0.478  Sum_probs=113.1

Q ss_pred             cCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHhCCCcccc
Q 026877           24 HPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSV  103 (231)
Q Consensus        24 h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~lG~~~G~V  103 (231)
                      ||++.|++++++++|+++.+++||++|++++++|+++++++|+++|+++|++++|.+  +++||++|++.++||+.+|+|
T Consensus         1 h~~~~t~~~~a~~~~~~~~~~~Ktlv~~~~~~~~~lv~~~~d~~ld~~kl~~~~g~~--~l~~a~~e~~~~~~g~~~G~v   78 (123)
T PF04073_consen    1 HPPTRTIEDAAKALGVPPEQIVKTLVLKDKKGRPVLVVLPGDHRLDLKKLAKALGAR--RLRLASPEELEELTGYEPGGV   78 (123)
T ss_dssp             ETTTSSHHHHHHHHTCSGGGEEEEEEEEETTTEEEEEEEETTSEB-HHHHHHHHT-S--SEEE-HHHHHHHHHSSTTTS-
T ss_pred             CcCCCcHHHHHHHcCCCHHHEEEEEEEEECCCCEEEEEECCCCEecHHHHhcccccc--chhhccHHHhhhccCCCccee
Confidence            899999999999999999999999999997788999999999999999999999975  699999999999999999999


Q ss_pred             ccccc-CCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHH
Q 026877          104 TPFAL-VNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF  151 (231)
Q Consensus       104 sPfgl-~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kl  151 (231)
                      +|||+ .+    ++++|+|+++.+.+.+|+|+|+++.++.++.+||.+|
T Consensus        79 ~P~g~~~~----~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l  123 (123)
T PF04073_consen   79 SPFGLPPK----GVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL  123 (123)
T ss_dssp             -SSGGGST----TEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred             cccccccC----ccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence            99999 65    8999999999999999999999999999999999986

The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....

>COG2606 EbsC Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=3.2e-26  Score=188.39  Aligned_cols=141  Identities=21%  Similarity=0.295  Sum_probs=130.4

Q ss_pred             HHHHHHhCCCCeEEE--Ec-CCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcc
Q 026877            8 LLARLKDLQIEFSQY--EH-PAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (231)
Q Consensus         8 v~~~L~~~~I~~~~~--~h-~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~l   84 (231)
                      ..+.|+.++|.|+.+  ++ +...|..++++.+|+++++++|||+++.++++++++|+|+++++|+++|++.+|.+  ++
T Consensus         4 a~~~l~~~~~~~~~~~~~~~~~~~~~~~aae~~g~~~~~i~KTLvl~~~~~~~~~~V~p~~~~Ldlkkla~~~G~k--k~   81 (155)
T COG2606           4 AVRLLDKAKIAFEVHVYELDPSALTGAEAAEALGVDPAQVAKTLVLAVDKGGPALAVVPGDQRLDLKKLAKALGAK--KA   81 (155)
T ss_pred             HHHHHHHhcCCCceeEEEecCCcccHHHHHHHhCCCHHHeeEEEEEEcCCCCEEEEEEeCcCccCHHHHHHHhCCc--cc
Confidence            567888899988773  33 45667999999999999999999999998788999999999999999999999987  59


Q ss_pred             eeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHh
Q 026877           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS  154 (231)
Q Consensus        85 r~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~  154 (231)
                      .|++++++++.|||..|+|+|||+.+    .+++|+|++++++++||+++|.++..|.|+++||.+++.+
T Consensus        82 ~ma~~~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~~  147 (155)
T COG2606          82 EMADPEEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLGA  147 (155)
T ss_pred             ccCCHHHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhcc
Confidence            99999999999999999999999986    8999999999999999999999999999999999999974

>cd04332 YbaK_like YbaK-like

Probab=99.94  E-value=1.4e-25  Score=177.92  Aligned_cols=130  Identities=31%  Similarity=0.476  Sum_probs=122.8

Q ss_pred             CeEEEEcCCC-CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHh
Q 026877           18 EFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL   96 (231)
Q Consensus        18 ~~~~~~h~~~-~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~l   96 (231)
                      .|..+.|++. .|++++++.++.++++++|+++|++++++++++++|+|+++|+++|++.+|.+  +++||+++++.+++
T Consensus         1 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~K~l~l~~~~~~~v~v~~~~d~~~d~~~l~~~~g~~--~l~~a~~~~~~~~~   78 (136)
T cd04332           1 EYLEYEHTPGAKTIEEAAEALGVPPGQIAKTLVLKDDKGGLVLVVVPGDHELDLKKLAKALGAK--KLRLASEEELEELT   78 (136)
T ss_pred             CcEEEecCCCCCCHHHHHHHcCCCHHHeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHhCCC--CeeeCCHHHHHHHh
Confidence            4778889887 99999999999999999999999997657999999999999999999999985  59999999999999


Q ss_pred             CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHH
Q 026877           97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK  153 (231)
Q Consensus        97 G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~  153 (231)
                      |+.+|+|+|||+..    ++++|+|+++.+.+.+++|+|+++.++.|+.+||.++++
T Consensus        79 g~~~G~v~P~~~~~----~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~  131 (136)
T cd04332          79 GCEPGGVGPFGLKK----GVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG  131 (136)
T ss_pred             CCCcCccCccccCC----CCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence            99999999999985    799999999999999999999999999999999999887

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).

>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function

Probab=99.92  E-value=1e-24  Score=176.54  Aligned_cols=128  Identities=19%  Similarity=0.243  Sum_probs=114.0

Q ss_pred             EEEcCC-CCCHHHHHHHhCCCCCceeEEEEEEecC---CcEEEEEEcCCCccCHHH-HHHHhCCCCCcceeCCHHHHHHH
Q 026877           21 QYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKK---HRFYIVSALADTKVDMKV-LSQRLGLGKGGLRMAPEETMLEI   95 (231)
Q Consensus        21 ~~~h~~-~~Tiee~a~~~g~~~~~ivKtLvlk~kk---~~~vLVvv~gd~~vd~kk-L~k~lG~kr~~lr~Aseeel~~~   95 (231)
                      .|+|.+ .....++|+.+|+++++++|||+++.++   .+|+++++++|+++|+++ +++.+|.+  +++|+++++++++
T Consensus         4 ~y~~~~~~~~~~~~A~~lG~~~~~i~KTLv~~~~~~~~~~~~v~vv~gd~~ldlkk~~~~~~g~k--k~~ma~~~ev~~~   81 (139)
T cd04939           4 VFAIDPELADTAAFCARYGFGLEDSANCVVVAGKRGGEERYAACVVLATTRADVNGVVKRRLGAR--KASFAPMETAVEL   81 (139)
T ss_pred             EEecCCCcccHHHHHHHhCCCHHHeEEEEEEEeecCCCccEEEEEEECccccCHHHHHHHHhCCC--CcccCCHHHHHHh
Confidence            456654 4567777889999999999999998642   268999999999999875 77999976  4999999999999


Q ss_pred             hCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHh
Q 026877           96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS  154 (231)
Q Consensus        96 lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~  154 (231)
                      |||.+|+|||||+..    .+++|+|+++++++.||+++|+.+.++.|+++||.++..+
T Consensus        82 TGy~~GGvsP~G~~~----~~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~a  136 (139)
T cd04939          82 TGMEYGGITPVGLPA----GWPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPGA  136 (139)
T ss_pred             hCCCCccCCcCCcCC----CCCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhCC
Confidence            999999999999985    8999999999999999999999999999999999999864

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial

Probab=99.90  E-value=2.7e-23  Score=170.92  Aligned_cols=118  Identities=20%  Similarity=0.295  Sum_probs=111.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecC-CcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHH
Q 026877           17 IEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKK-HRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEI   95 (231)
Q Consensus        17 I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk-~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~   95 (231)
                      ..|+.++||++.|++++++.+|+...+++|+|+|++++ ++|+++++|+|+++|+++|++.+|.+  +++||++|++.++
T Consensus        25 ~~~~~v~hp~~~t~~~~a~~~~~~~~~~~K~l~~~~~~~~~~~l~~~~~d~~vd~~kl~~~~g~~--~l~~a~~eel~~~  102 (160)
T cd04334          25 KELEKVATPGQKTIEELAEFLGVPPSQTVKTLLVKADGEEELVAVLLRGDHELNEVKLENLLGAA--PLELASEEEIEAA  102 (160)
T ss_pred             cCCeEEcCcCCCCHHHHHHHhCcCHHHeEEEEEEEECCCCCEEEEEecCCchhCHHHHHHhcCCC--cceeCCHHHHHHh
Confidence            78999999999999999999999999999999999865 47999999999999999999999986  5999999999999


Q ss_pred             hCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceE
Q 026877           96 LKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI  141 (231)
Q Consensus        96 lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl  141 (231)
                      +|+.+|+|+|||+.     ++++|+|+++...+.+++++|..+..+
T Consensus       103 ~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~~~~  143 (160)
T cd04334         103 TGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDDYHY  143 (160)
T ss_pred             hCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCCcEE
Confidence            99999999999997     599999999999999999999988766

It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=99.71  E-value=7.7e-17  Score=156.49  Aligned_cols=114  Identities=21%  Similarity=0.293  Sum_probs=105.7

Q ss_pred             EEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHhCCCc
Q 026877           21 QYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPL  100 (231)
Q Consensus        21 ~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~lG~~~  100 (231)
                      .++||+..|++++++.+|+++++++|||++++++ +++++++|+|+++|+++|++.+|.+  +++||+++++.+.+|+.+
T Consensus       252 ~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~~~~-~~~lvvvp~d~~vn~~kl~~~lg~~--~l~~a~~eel~~~~g~~~  328 (565)
T PRK09194        252 KVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADG-ELVAVLVRGDHELNEVKLENLLGAA--PLELATEEEIRAALGAVP  328 (565)
T ss_pred             eecCCCCCcHHHHHHHhCCCHHHeeEEEEEEeCC-eEEEEEeecchhhhHHHHHhhcCCc--ccccCCHHHHHHhhCCCC
Confidence            4478889999999999999999999999999864 7999999999999999999999986  599999999999999999


Q ss_pred             ccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceE
Q 026877          101 GSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI  141 (231)
Q Consensus       101 G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl  141 (231)
                      |+++|||+.+    ++++|+|.++...+.+++++|..+..+
T Consensus       329 G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~~g~h~  365 (565)
T PRK09194        329 GFLGPVGLPK----DVPIIADRSVADMSNFVVGANEDDYHY  365 (565)
T ss_pred             CccCcccCCC----CceEEEeccccccccccccCCCCCcee
Confidence            9999999986    799999999999999999988887666

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II

Probab=99.29  E-value=1.4e-11  Score=119.95  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=103.8

Q ss_pred             eEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHh
Q 026877           19 FSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEIL   96 (231)
Q Consensus        19 ~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~l   96 (231)
                      .+.+++|.+.|+++++.++++++.+.+|+++++..++  +++++++|||++||+.|+++.+|.. ..+++|+++++...+
T Consensus       251 ~~~~~tp~~~ti~~~~~~~~~~~~~~~k~~~~~~~~~~~~~v~v~~rgd~~vn~~k~~~~~g~~-~~~~~a~~~~~~~~~  329 (568)
T TIGR00409       251 LDKVDTPNTKTIAELVECFNLPAEKVVKTLLVKAVDKSEPLVALLVRGDHELNEVKAPNLLLVA-QVLELATEEEIFQKI  329 (568)
T ss_pred             ceeecCCCCCcHHHHHHHhCCCHhHeeeEEEEEecCCccceEEEEecCcchhhHHHHHHHhccC-cccccCCHHHHHHhh
Confidence            4678899999999999999999999999999987432  5999999999999999999999532 148999999999999


Q ss_pred             CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceE
Q 026877           97 KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSI  141 (231)
Q Consensus        97 G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl  141 (231)
                      |..+|+++|+|+..    .+++++|.++.....+.++++..+.-+
T Consensus       330 g~~~g~~gpv~~~~----~~~i~~D~~~~~~~~~~~gan~~~~h~  370 (568)
T TIGR00409       330 ASGPGSLGPVNING----GIPVLIDQTVALMSDFAAGANADDKHY  370 (568)
T ss_pred             CCCCCccCcccccc----CceEEechhhhcccccccccCCCCcee
Confidence            99999999999874    689999999999998888888775433

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
1vjf_A	180	Crystal Structure Of A Putative Dna-Binding Protein		8e-25
1vki_A	181	Crystal Structure Of A Putative Oligo-Nucleotide Bi		9e-19

>pdb|1VJF|A Chain A, Crystal Structure Of A Putative Dna-Binding Protein (Cc_0111) From Caulobacter Crescentus Cb15 At 1.62 A Resolution Length = 180

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           ++  L A      ++    +HP V  VE   +      GG +KNLFLKD K + +++SAL
Sbjct: 15  TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAXPGGHTKNLFLKDAKGQLWLISAL 74
Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +T +D+K L   +G G+  L   P+E  LE L V  GSVT F L+N++ + V  +LDK 
Sbjct: 75  GETTIDLKKLHHVIGSGR--LSFGPQEXXLETLGVTPGSVTAFGLINDTEKRVRFVLDKA 132
Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVG 171
               +   FHPL ND + +++   L +FL ++G +P  VD  A   VG
Sbjct: 133 LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPXIVDFAAXEVVG 180

>pdb|1VKI|A Chain A, Crystal Structure Of A Putative Oligo-Nucleotide Binding Protein (Atu3699, Agr_l_2275) From Agrobacterium Tumefaciens Str. C58 At 1.60 A Resolution Length = 181

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 81/153 (52%), Gaps = 1/153 (0%)
Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
           +L   L  L I  +  +H  V TV         I GG +KNLF+KDKK ++++++   + 
Sbjct: 23  ELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENA 82
Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA 126
            VD+K + + +G     +     E MLE L V  GSVT F  +N++AR V  +LD     
Sbjct: 83  VVDLKSVHKTIG-AASRVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLE 141
Query: 127 QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP 159
            E    HPLSND + ++ + DL +FL++ G  P
Sbjct: 142 NELVNGHPLSNDQTTTIASKDLIRFLEATGHAP 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
1vjf_A	180	DNA-binding protein, putative; structural genomics	4e-50
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	4e-47
3op6_A	152	Uncharacterized protein; structural genomics, join	1e-14

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1 Length = 180

 Score =  160 bits (406), Expect = 4e-50
 Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           ++  L A      ++    +HP V  VE   +    + GG +KNLFLKD K + +++SAL
Sbjct: 15  TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISAL 74

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +T +D+K L   +G G+  L   P+E MLE L V  GSVT F L+N++ + V  +LDK 
Sbjct: 75  GETTIDLKKLHHVIGSGR--LSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKA 132

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVG 171
               +   FHPL ND + +++   L +FL ++G +P  VD  A   VG
Sbjct: 133 LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEVVG 180

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1 Length = 181

 Score =  153 bits (387), Expect = 4e-47
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           +  +L   L  L I  +  +H  V TV         I GG +KNLF+KDKK ++++++  
Sbjct: 20  TATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVE 79

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +  VD+K + + +G     +     E MLE L V  GSVT F  +N++AR V  +LD  
Sbjct: 80  ENAVVDLKSVHKTIGAASR-VSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSD 138

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164
               E    HPLSND + ++ + DL +FL++ G  P  + +
Sbjct: 139 LLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKV 179

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp} Length = 152

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 30/148 (20%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 7   QLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADT 66
           +L   L   +I++    H    T +  A      G  L+K + +K    R  +V   A  
Sbjct: 6   KLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMDG-RLAMVVLPASD 64

Query: 67  KVDMKVLSQRLGLGKGGLRMAPEETMLEILK-VPLGSVTPFALVNESARDVALLLDKGFK 125
            +    L + +G     L +A E           +G++ PF         + +L+     
Sbjct: 65  HITFMKLKEAIGTSD--LELATESEFEGKFAECDVGAMPPFGN----LYGLPVLVSTKLS 118

Query: 126 AQERCFFHPLSNDMSISLNTNDLDKFLK 153
           AQ+   F+  S+   + L+  D +K +K
Sbjct: 119 AQDNILFNAGSHSELMQLSFGDFEKLVK 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
1vjf_A	180	DNA-binding protein, putative; structural genomics	100.0
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	100.0
3op6_A	152	Uncharacterized protein; structural genomics, join	100.0
2z0x_A	158	Putative uncharacterized protein TTHA1699; protein	100.0
1wdv_A	152	Hypothetical protein APE2540; structural genomics,	100.0
1dbu_A	158	HI1434, cysteinyl-tRNA(Pro) deacylase; structural	99.98
2dxa_A	166	Protein YBAK; trans-editing domain, prolyl-tRNA sy	99.97
3mem_A	457	Putative signal transduction protein; structural g	99.91
2j3l_A	572	Prolyl-tRNA synthetase; class II aminoacyl- T synt	99.33

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1

Probab=100.00  E-value=8e-38  Score=261.28  Aligned_cols=164  Identities=36%  Similarity=0.637  Sum_probs=156.6

Q ss_pred             CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCC
Q 026877            3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG   82 (231)
Q Consensus         3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~   82 (231)
                      |+.++++++|+++||+|+.++||+..|++++++++|+++++++|||++++++++|+++++|+|+++|+++|++.+|.+  
T Consensus        14 ~~~~~v~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~~lvvv~gd~~ld~kkl~~~lg~k--   91 (180)
T 1vjf_A           14 KTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG--   91 (180)
T ss_dssp             CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--
T ss_pred             chHHHHHHHHHHCCCCEEEEecCCCCCHHHHHHHcCCCccceeeEEEEEeCCCCEEEEEEeCCCccCHHHHHHHhCCC--
Confidence            578999999999999999999999999999999999999999999999996678999999999999999999999986  


Q ss_pred             cceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877           83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (231)
Q Consensus        83 ~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v  162 (231)
                      +++||++|+++++|||.+|+|+|||+.++..+.+++|+|+++...+.++||+|+++.++.|+++||.+++++.+|++.|+
T Consensus        92 ~l~~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v  171 (180)
T 1vjf_A           92 RLSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIV  171 (180)
T ss_dssp             CEEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEE
T ss_pred             CeeeCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEE
Confidence            59999999999999999999999999876667799999999999999999999999999999999999999999999999


Q ss_pred             EccCCC
Q 026877          163 DLEANP  168 (231)
Q Consensus       163 d~~~~~  168 (231)
                      ||+++.
T Consensus       172 ~~~~~~  177 (180)
T 1vjf_A          172 DFAAME  177 (180)
T ss_dssp             ETTTTE
T ss_pred             ECcccc
Confidence            998854

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1

Probab=100.00  E-value=2.4e-37  Score=258.62  Aligned_cols=163  Identities=33%  Similarity=0.526  Sum_probs=154.7

Q ss_pred             CCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhC-CC
Q 026877            2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG-LG   80 (231)
Q Consensus         2 ~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG-~k   80 (231)
                      .|+.++++++|+++||+|+.++||+..|++++++++|+.+++++|||++++++++|+++++|+|+++|++++++.+| .+
T Consensus        18 ~~~~~~~~~~L~~~~i~~~~~~~p~~~T~ee~a~~l~~~~~~~~KtLvl~~~~~~~vlvvv~gd~~ld~kkl~~~lg~~k   97 (181)
T 1vki_A           18 RKTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAAS   97 (181)
T ss_dssp             CCCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCSS
T ss_pred             chHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHcCCCccceeEEEEEEEcCCeEEEEEEeCCCccCHHHHHHHhCCCC
Confidence            46789999999999999999999999999999999999999999999999976789999999999999999999999 55


Q ss_pred             CCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (231)
Q Consensus        81 r~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~  160 (231)
                        +++||++++++++|||.+|+|+|||+.+|..+++++|+|+++...+.++||+|.++.++.|+++||.+++++.||++.
T Consensus        98 --~l~~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~  175 (181)
T 1vki_A           98 --RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPL  175 (181)
T ss_dssp             --SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCE
T ss_pred             --CeEECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeE
Confidence              599999999999999999999999997665668999999999999999999999999999999999999999999999


Q ss_pred             EEEccC
Q 026877          161 YVDLEA  166 (231)
Q Consensus       161 ~vd~~~  166 (231)
                      |+||++
T Consensus       176 ~v~~~~  181 (181)
T 1vki_A          176 VLKVSE  181 (181)
T ss_dssp             EECCBC
T ss_pred             EEeCCC
Confidence            999964

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}

Probab=100.00  E-value=5.1e-35  Score=237.67  Aligned_cols=151  Identities=22%  Similarity=0.353  Sum_probs=137.7

Q ss_pred             CCCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCC
Q 026877            2 AYSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGK   81 (231)
Q Consensus         2 ~~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr   81 (231)
                      ||+.++++++|+++||+|+.++||+..|++++++++|+++.+++|||+++++ ++|+++++|+|+++|++++++.+|.+ 
T Consensus         1 ~M~~~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg~~-   78 (152)
T 3op6_A            1 GMPVKKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMD-GRLAMVVLPASDHITFMKLKEAIGTS-   78 (152)
T ss_dssp             -CHHHHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEET-TEEEEEEEETTCCCCHHHHHHHHSCS-
T ss_pred             CCcHHHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEEC-CeEEEEEECCCCeECHHHHHHHhCCC-
Confidence            6889999999999999999999999999999999999999999999999996 67999999999999999999999986 


Q ss_pred             CcceeCCHHHHHHHh-CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877           82 GGLRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (231)
Q Consensus        82 ~~lr~Aseeel~~~l-G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~  160 (231)
                       +++||+++++.+.+ ||.+|+|+|||+.+    ++++|+|+++...+.+|+|+|+++.++.|+++||.++++     ..
T Consensus        79 -~~~~a~~e~l~~~~tG~~~G~v~P~g~~~----~~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~  148 (152)
T 3op6_A           79 -DLELATESEFEGKFAECDVGAMPPFGNLY----GLPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK-----PT  148 (152)
T ss_dssp             -CEEECCGGGTGGGCTTSCTTCCCSCGGGG----TCCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC-----CE
T ss_pred             -ceeeCCHHHHHHHhcCCCcCCCCCCCCCc----CCeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc-----Ce
Confidence             59999999999885 99999999999986    699999999999999999999999999999999999997     44


Q ss_pred             EEEc
Q 026877          161 YVDL  164 (231)
Q Consensus       161 ~vd~  164 (231)
                      ++|+
T Consensus       149 ~~d~  152 (152)
T 3op6_A          149 LVTL  152 (152)
T ss_dssp             EECC
T ss_pred             ecCC
Confidence            5553

>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A

Probab=100.00  E-value=1.5e-33  Score=229.75  Aligned_cols=153  Identities=18%  Similarity=0.228  Sum_probs=143.7

Q ss_pred             CCCCHHHHHHHHHhCCCCe-EEEEcCC-CCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhC
Q 026877            1 MAYSKDQLLARLKDLQIEF-SQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLG   78 (231)
Q Consensus         1 m~~~~~~v~~~L~~~~I~~-~~~~h~~-~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG   78 (231)
                      |.|+.++++++|+++||+| +.++||+ ..|++++++++|+++++++|||+++++ ++|+++++|+|+++|++++++.+|
T Consensus         3 ~~m~~~~~~~~L~~~~i~~~~~~~~p~~~~t~~e~a~~lg~~~~~~~Ktlv~~~~-~~~~lvvv~gd~~ld~~kl~~~lg   81 (158)
T 2z0x_A            3 LSPSARRVQGALETRGFGHLKVVELPASTRTAKEAAQAVGAEVGQIVKSLVFVGE-KGAYLFLVSGKNRLDLGKATRLVG   81 (158)
T ss_dssp             CCHHHHHHHHHHHHTTCTTSCEEECSSCCSSHHHHHHHHTCCGGGEEEEEEEEES-SSEEEEEEETTCCBCHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHcCCCCCEEEEcCCCCCCHHHHHHHcCCCHHHEEEEEEEEeC-CcEEEEEEECchhhCHHHHHHHhC
Confidence            4567899999999999999 9999995 999999999999999999999999984 679999999999999999999999


Q ss_pred             CCCCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCC
Q 026877           79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD  158 (231)
Q Consensus        79 ~kr~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~  158 (231)
                      .+   ++||+++++.++|||.+|+|+|||+.+    ++++|+|+++...+.+|+|+|.++.++.|+++||.++++     
T Consensus        82 ~~---l~~a~~e~~~~~tG~~~G~v~P~gl~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----  149 (158)
T 2z0x_A           82 GP---LRQATPEEVRELTGFAIGGVPPVGHNT----PLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG-----  149 (158)
T ss_dssp             SC---EEECCHHHHHHHHSSCTTSCCSSCCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----
T ss_pred             CC---cEECCHHHHHHHhCCCCccCCcCCCCC----CCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----
Confidence            73   999999999999999999999999975    799999999999999999999999999999999999997     


Q ss_pred             CEEEEccC
Q 026877          159 PAYVDLEA  166 (231)
Q Consensus       159 ~~~vd~~~  166 (231)
                      ..|+|++.
T Consensus       150 ~~~~di~~  157 (158)
T 2z0x_A          150 AQVADLKE  157 (158)
T ss_dssp             CEEECCBC
T ss_pred             CEEEEeec
Confidence            56888874

>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1

Probab=100.00  E-value=4.2e-32  Score=219.17  Aligned_cols=148  Identities=17%  Similarity=0.287  Sum_probs=139.8

Q ss_pred             HHHHHHHHhCCCCeEEEEcCCC-CCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcc
Q 026877            6 DQLLARLKDLQIEFSQYEHPAV-MTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (231)
Q Consensus         6 ~~v~~~L~~~~I~~~~~~h~~~-~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~l   84 (231)
                      ++++++|+++||+|+.++||+. .|++++++++|+++++++|||++++++++|+++++|+|+++|++++++.+| +  ++
T Consensus         3 ~~~~~~L~~~~i~~~~~~~p~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~~l~vv~gd~~ld~~kl~~~~g-~--~l   79 (152)
T 1wdv_A            3 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAG-K--PV   79 (152)
T ss_dssp             CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHT-S--CE
T ss_pred             HHHHHHHHHCCCCcEEEEcCCCCCCHHHHHHHcCCCHHHeEEEEEEEeCCCcEEEEEEECchhhCHHHHHHHHC-C--Cc
Confidence            5799999999999999999998 999999999999999999999999866689999999999999999999999 4  59


Q ss_pred             eeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEc
Q 026877           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL  164 (231)
Q Consensus        85 r~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~  164 (231)
                      +||++++++++|||.+|+|+|||+.+    ++++|+|+++...+.+|+++|.++.++.++++||.+++.     ..|+|+
T Consensus        80 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~-----~~~~di  150 (152)
T 1wdv_A           80 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV  150 (152)
T ss_dssp             EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred             eeCCHHHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhC-----CEEEee
Confidence            99999999999999999999999975    799999999999999999999999999999999999986     467887


Q ss_pred             c
Q 026877          165 E  165 (231)
Q Consensus       165 ~  165 (231)
                      +
T Consensus       151 ~  151 (152)
T 1wdv_A          151 S  151 (152)
T ss_dssp             B
T ss_pred             e
Confidence            5

>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A

Probab=99.98  E-value=2.1e-31  Score=216.79  Aligned_cols=151  Identities=15%  Similarity=0.237  Sum_probs=136.2

Q ss_pred             HHHHHHHHhCCCCeEEE--EcCCC--CCHHHHHHHhCCCCCceeEEEEEEe--cCCcEEEEEEcCCCccCHHHHHHHhCC
Q 026877            6 DQLLARLKDLQIEFSQY--EHPAV--MTVEAQAKYVGNIGGGLSKNLFLKD--KKHRFYIVSALADTKVDMKVLSQRLGL   79 (231)
Q Consensus         6 ~~v~~~L~~~~I~~~~~--~h~~~--~Tiee~a~~~g~~~~~ivKtLvlk~--kk~~~vLVvv~gd~~vd~kkL~k~lG~   79 (231)
                      ++++++|+++||+|+.+  +|++.  .|++++|+.+|+++++++|||+++.  ++++|+++++|+|+++|++++++.+|.
T Consensus         2 t~~~~~L~~~~i~~~~~~~~~~~~~~~t~~e~a~~l~~~~~~~~Ktl~~~~~~~~~~~~lvv~~gd~~ld~~kl~~~~g~   81 (158)
T 1dbu_A            2 TPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGV   81 (158)
T ss_dssp             CHHHHHHHHHTCCCEEEECCCCCC-----CHHHHHHTCCGGGEEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTC
T ss_pred             ChHHHHHHHCCCCeEEEEEccCCcccchHHHHHHHcCCCHhHeEEEEEEEecCCCCcEEEEEEECCceeCHHHHHHHhCC
Confidence            57899999999999996  56665  6899999999999999999999985  345799999999999999999999998


Q ss_pred             CCCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCC
Q 026877           80 GKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDP  159 (231)
Q Consensus        80 kr~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~  159 (231)
                      +  +++||++++++++|||.+|+|+|||+..    ++++|+|+++...+.+++|+|+++.++.++++||.+++.     .
T Consensus        82 ~--~l~~a~~e~~~~~tG~~~G~v~P~g~~~----~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~-----~  150 (158)
T 1dbu_A           82 K--KVEMADKDAAQKSTGYLVGGISPLGQKK----RVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----A  150 (158)
T ss_dssp             S--CEEECCHHHHHHHHSSCTTSCCSSSCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----C
T ss_pred             C--CeeeCCHHHHHHHhCCCCccCCCCCCCC----CCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhC-----C
Confidence            6  5999999999999999999999999865    799999999999999999999999999999999999997     4


Q ss_pred             EEEEccCC
Q 026877          160 AYVDLEAN  167 (231)
Q Consensus       160 ~~vd~~~~  167 (231)
                      .|+||+.+
T Consensus       151 ~~~di~~~  158 (158)
T 1dbu_A          151 EFTDIVDE  158 (158)
T ss_dssp             EEECCBCC
T ss_pred             EEEeeecC
Confidence            68888753

>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}

Probab=99.97  E-value=7.9e-31  Score=215.48  Aligned_cols=151  Identities=17%  Similarity=0.234  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhCCCCeEEE--EcCC--CCCHHHHHHHhCCCCCceeEEEEEEecCC--cEEEEEEcCCCccCHHHHHHHhC
Q 026877            5 KDQLLARLKDLQIEFSQY--EHPA--VMTVEAQAKYVGNIGGGLSKNLFLKDKKH--RFYIVSALADTKVDMKVLSQRLG   78 (231)
Q Consensus         5 ~~~v~~~L~~~~I~~~~~--~h~~--~~Tiee~a~~~g~~~~~ivKtLvlk~kk~--~~vLVvv~gd~~vd~kkL~k~lG   78 (231)
                      ++++.++|+++||+|+.+  +|++  ..|++++|+.+|+++++++|||+++++++  +|+++++|+|+++|++++++.+|
T Consensus         8 ~t~~~~~L~~~~i~y~~~~~~h~~~~~~~~~e~a~~l~~~~~~~~Ktlv~~~~~~~~~~~lvvv~gd~~ld~~kl~~~lg   87 (166)
T 2dxa_A            8 MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALG   87 (166)
T ss_dssp             CCHHHHHHHHTTCCCEEEECCCCTTSCCSSCHHHHHHTCCTTTEEEEEEEEETTEEEEEEEEEEETTSEECHHHHHHHHT
T ss_pred             hhHHHHHHHHCCCCcEEEEEecCCcccchHHHHHHHcCCCHHHeeEEEEEEeCCCCceEEEEEEeCCceeCHHHHHHHhC
Confidence            378999999999999994  5887  36889999999999999999999998532  49999999999999999999999


Q ss_pred             CCCCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCC
Q 026877           79 LGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD  158 (231)
Q Consensus        79 ~kr~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~  158 (231)
                      .+  +++||+++++.+++||.+|+|+|||+..    .+++|+|+++...+.+|+|+|+++.++.++++||.++++     
T Consensus        88 ~~--~l~~a~~e~~~~~tG~~~G~v~P~g~~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~-----  156 (166)
T 2dxa_A           88 AK--KVEMADPMVAQRSTGYLVGGISPLGQKK----RLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILD-----  156 (166)
T ss_dssp             CS--CEEECCHHHHHHHHSSCTTCCCSSSCSS----CCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHT-----
T ss_pred             CC--ceEECCHHHHHHccCCCCccCCCcCCCC----CCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhC-----
Confidence            86  5999999999999999999999999975    799999999999999999999999999999999999987     


Q ss_pred             CEEEEccC
Q 026877          159 PAYVDLEA  166 (231)
Q Consensus       159 ~~~vd~~~  166 (231)
                      ..|+|++.
T Consensus       157 ~~~~di~~  164 (166)
T 2dxa_A          157 AKFADIAR  164 (166)
T ss_dssp             CEEECCEE
T ss_pred             CEEEEEec
Confidence            45888764

>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}

Probab=99.91  E-value=1.1e-24  Score=204.77  Aligned_cols=136  Identities=17%  Similarity=0.251  Sum_probs=125.6

Q ss_pred             HHHHHHHHhC--CCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCc
Q 026877            6 DQLLARLKDL--QIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG   83 (231)
Q Consensus         6 ~~v~~~L~~~--~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~   83 (231)
                      ++++++|+++  ||+|+.++              |+++++++|||+++++++ |+++++|+++++|++++++.+|.+   
T Consensus         6 ~~v~~~L~~~~~~i~y~~~~--------------g~~~~~i~Ktl~~~~~~~-~~l~v~p~~~~ldlk~l~~~~g~k---   67 (457)
T 3mem_A            6 VVVQQALGDNAPGVSFRSVS--------------QIDTGHLLRMVLLSDDQG-NLQAICRRNDMLDLEALNKRLGRD---   67 (457)
T ss_dssp             HHHHHHHTTSCTTCEEEECC--------------SSCGGGBEEEEEEEETTE-EEEEEEETTSEECHHHHHHHHTCC---
T ss_pred             HHHHHHHHhCCCCCceEEeC--------------CCCHhHeeeEEEEEECCc-EEEEEecCCCeeCHHHHHHHhCCC---
Confidence            7899999999  99999987              677999999999999754 999999999999999999999974   


Q ss_pred             ceeCCHHHHHHHh-CCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877           84 LRMAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (231)
Q Consensus        84 lr~Aseeel~~~l-G~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v  162 (231)
                      ++|++++++.++| ||.+|+|||||..+    ++++|+|+++.+++.||+++|+++.++.|+++||.+++++.+|    .
T Consensus        68 ~~~~~~~~~~~~~~g~~~Ggv~P~g~~~----~~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~----~  139 (457)
T 3mem_A           68 LRMMQRREQVRVRQKAGLQELPALPSLT----GWPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAAR----H  139 (457)
T ss_dssp             CEECCHHHHHHHHHHHTCSSCCSCGGGT----CCCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEE----E
T ss_pred             CeeCCHHHHHHHcCCCCCCCCCCCCCCc----CCCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCc----c
Confidence            9999999999999 69999999999987    7999999999999999999999999999999999999987655    4


Q ss_pred             EccCC
Q 026877          163 DLEAN  167 (231)
Q Consensus       163 d~~~~  167 (231)
                      +|+..
T Consensus       140 ~f~~~  144 (457)
T 3mem_A          140 DFAVD  144 (457)
T ss_dssp             CCEEC
T ss_pred             ccccc
Confidence            55554

>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*

Probab=99.33  E-value=4.8e-11  Score=114.37  Aligned_cols=106  Identities=20%  Similarity=0.215  Sum_probs=96.1

Q ss_pred             CCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcceeCCHHHHHHHhCCCcccccc
Q 026877           26 AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTP  105 (231)
Q Consensus        26 ~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~lr~Aseeel~~~lG~~~G~VsP  105 (231)
                      ...|++++++.+|++..+++|+++++.+ ++++++++++++++|++++.+.+|.+  .+++++.+++.+++|+..|+++|
T Consensus       259 ~~~ti~~l~~~lg~~~~~i~K~l~~~~~-~~~~~vli~gd~el~~~kl~~~l~~~--~l~~a~~~el~~~~g~~~g~~~p  335 (572)
T 2j3l_A          259 EVGTIAEVANFFEVEPQRIIKSVLFIAD-EEPVMVLVRGDHDVNDVKLKNFLGAD--FLDEATEEDARRVLGAGFGSIGP  335 (572)
T ss_dssp             TCCSHHHHHHHHTCCGGGBEEEEEEEET-TEEEEEEEETTCCBCHHHHHHHHTCS--CEEECCHHHHHHHHSSCTTSCCS
T ss_pred             CCCcHHHHHHHhCcCHHHeEEEEEEEeC-CcEEEEEeeCccccCHHHHHHhhCCC--ccccCCHHHHHHhhCCCccccCC
Confidence            3567999999999999999999999985 47999999999999999999999975  59999999999999999999999


Q ss_pred             cccCCCCCCCeEEEEeccccCCCeEEEecCCCC
Q 026877          106 FALVNESARDVALLLDKGFKAQERCFFHPLSND  138 (231)
Q Consensus       106 fgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~  138 (231)
                      +|+..    ++++++|.++.....+++++|..+
T Consensus       336 ~gl~~----~i~~~iD~sl~r~~~~~~ga~~~~  364 (572)
T 2j3l_A          336 VNVSE----DVKIYADLAVQDLANAIVGANEDG  364 (572)
T ss_dssp             TTCCT----TCEEEEETTTTTCCSEEEECSSTT
T ss_pred             ccCCC----CCcEEEehhhhcCCceEEccCCCC
Confidence            99963    699999999999999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1vjfa_	168	d.116.1.1 (A:) Hypothetical protein CC0111 {Caulob	4e-41
d1vkia_	165	d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrob	4e-39
d1wdva_	150	d.116.1.1 (A:) Hypothetical protein APE2540 {Aerop	3e-12

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]} Length = 168

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

 Score =  136 bits (343), Expect = 4e-41
 Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 2/168 (1%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           ++  L A      ++    +HP V  VE   +    + GG +KNLFLKD K + +++SAL
Sbjct: 3   TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISAL 62

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +T +D+K L   +G G+  L   P+E MLE L V  GSVT F L+N++ + V  +LDK 
Sbjct: 63  GETTIDLKKLHHVIGSGR--LSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKA 120

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVG 171
               +   FHPL ND + +++   L +FL ++G +P  VD  A   VG
Sbjct: 121 LADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAAMEVVG 168

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]} Length = 165

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

 Score =  130 bits (329), Expect = 4e-39
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 1/161 (0%)

Query: 4   SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSAL 63
           +  +L   L  L I  +  +H  V TV         I GG +KNLF+KDKK ++++++  
Sbjct: 4   TATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVE 63

Query: 64  ADTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKG 123
            +  VD+K + + +G     +     E MLE L V  GSVT F  +N++AR V  +LD  
Sbjct: 64  ENAVVDLKSVHKTIGAASR-VSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSD 122

Query: 124 FKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL 164
               E    HPLSND + ++ + DL +FL++ G  P  + +
Sbjct: 123 LLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKV 163

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]} Length = 150

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

 Score = 60.4 bits (146), Expect = 3e-12
 Identities = 23/149 (15%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 6   DQLLARLKDLQIEFSQYEHPA-VMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALA 64
           +++   +K   + +          TV   A  +G     + K L + D     Y V    
Sbjct: 1   EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPG 60

Query: 65  DTKVDMKVLSQRLGLGKGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF 124
           D ++++  + +        +R+A    ++E+   P+G V P AL      ++ L++D+  
Sbjct: 61  DKRLNINSMKEL---AGKPVRLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRIL 113

Query: 125 KAQERCFFHPLSNDMSISLNTNDLDKFLK 153
            ++++ +      +  +  +  +L +   
Sbjct: 114 LSRKKVYGGGGRENALLEFSPRELVEATG 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1vjfa_	168	Hypothetical protein CC0111 {Caulobacter crescentu	100.0
d1vkia_	165	Hypothetical protein Atu3699 {Agrobacterium tumefa	100.0
d1wdva_	150	Hypothetical protein APE2540 {Aeropyrum pernix [Ta	100.0
d1dbxa_	157	Hypothetical protein HI1434 (YbaK homologue) {Haem	99.97

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

Probab=100.00  E-value=2.2e-41  Score=277.95  Aligned_cols=166  Identities=37%  Similarity=0.654  Sum_probs=160.5

Q ss_pred             CHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCc
Q 026877            4 SKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGG   83 (231)
Q Consensus         4 ~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~   83 (231)
                      +.++++++|+++||+|++++|+++.|++++++.++..+++++||+++++++++|+++++++++++|++++++.+|.+  +
T Consensus         3 ~~~~l~~~L~~~~I~y~~~~H~~~~t~~e~a~~~~~~~~~~~K~l~l~~~~~~~~l~v~~~d~~~~~k~l~~~lg~~--~   80 (168)
T d1vjfa_           3 TRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSG--R   80 (168)
T ss_dssp             CHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHHHSCSEEEEEEEEEETTSCEEEEEEETTCCCCTTTHHHHHTCS--C
T ss_pred             cHHHHHHHHHHCCCCeEEEECCCcCCHHHHHHhcCCCccceEEEEEEEecCcceEEEEecchhhcchHHHHHHhccc--c
Confidence            47899999999999999999999999999999999999999999999998889999999999999999999999987  5


Q ss_pred             ceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEE
Q 026877           84 LRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD  163 (231)
Q Consensus        84 lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd  163 (231)
                      ++||++|++++++||.+|+|||||+.+|..+.+++|+|+++.+.+.||||||+|+.++.|+++||.||++++||.|.|+|
T Consensus        81 ~~~a~~e~~~~~~G~~~G~v~Pfg~~~d~~~~v~v~iD~~l~~~~~i~~~~g~~~~ti~l~~~dl~k~l~~~~~~p~~~d  160 (168)
T d1vjfa_          81 LSFGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVD  160 (168)
T ss_dssp             EEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEEE
T ss_pred             ccccCHHHHHHccCCCCCcccccccccCCccCcceeechhHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCcEEEE
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCC
Q 026877          164 LEANPAVG  171 (231)
Q Consensus       164 ~~~~~~~~  171 (231)
                      |++.+++|
T Consensus       161 ~~~~~~~~  168 (168)
T d1vjfa_         161 FAAMEVVG  168 (168)
T ss_dssp             TTTTEEC-
T ss_pred             cccCCCCC
Confidence            99999887

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

Probab=100.00  E-value=6.7e-41  Score=274.42  Aligned_cols=163  Identities=33%  Similarity=0.528  Sum_probs=156.9

Q ss_pred             CCHHHHHHHHHhCCCCeEEEEcCCCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCC
Q 026877            3 YSKDQLLARLKDLQIEFSQYEHPAVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKG   82 (231)
Q Consensus         3 ~~~~~v~~~L~~~~I~~~~~~h~~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~   82 (231)
                      ++.+++.++|+++||+|+.++|+++.|++++++.++..+++++|||||++++++|+|+++++++++|++++++.+|.. +
T Consensus         3 ~t~~~l~~~L~~~~I~y~~~~H~~~~t~eea~~~~~~~~~~~~KtL~l~~k~~~~~l~vv~~d~~vd~~~l~~~~g~~-k   81 (165)
T d1vkia_           3 KTATELFEFLDGLGISHTTKQHEPVFTVAESQSLRDLIPGGHTKNLFVKDKKDQYFVLTVEENAVVDLKSVHKTIGAA-S   81 (165)
T ss_dssp             CCHHHHHHHHHHHTCCCEEEECCCCCSHHHHHHHHTTSCSEEEEEEEEECTTCCEEEEEEETTCCBCTTTHHHHHTCS-S
T ss_pred             cCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHhcCCCccceeEEEEEEecCCceEEEEEeCccccCHHHHHHHhccc-h
Confidence            578999999999999999999999999999999999999999999999998889999999999999999999999963 2


Q ss_pred             cceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEE
Q 026877           83 GLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV  162 (231)
Q Consensus        83 ~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~v  162 (231)
                      +++||++|++.+++||.+|+|||||+.+|..+.|++|+|+++...+.||||||+|+.+|.|+++||.+|++++||.|.|+
T Consensus        82 ~l~~a~~e~~~~~~g~~~G~V~Pfg~~~d~~~~v~viiD~~l~~~~~i~~~~g~~~~ti~i~~~dl~k~l~~~~h~~~~~  161 (165)
T d1vkia_          82 RVSFGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVL  161 (165)
T ss_dssp             SCEECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCEEE
T ss_pred             hccccCHHHHHHhhCCCcccccchhhccCcccccceehhhHHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCeEEE
Confidence            69999999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             EccC
Q 026877          163 DLEA  166 (231)
Q Consensus       163 d~~~  166 (231)
                      ||++
T Consensus       162 ~~~e  165 (165)
T d1vkia_         162 KVSE  165 (165)
T ss_dssp             CCBC
T ss_pred             eCCC
Confidence            9974

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=7.7e-34  Score=228.93  Aligned_cols=149  Identities=17%  Similarity=0.289  Sum_probs=139.9

Q ss_pred             HHHHHHHHhCCCCeEEEEcC-CCCCHHHHHHHhCCCCCceeEEEEEEecCCcEEEEEEcCCCccCHHHHHHHhCCCCCcc
Q 026877            6 DQLLARLKDLQIEFSQYEHP-AVMTVEAQAKYVGNIGGGLSKNLFLKDKKHRFYIVSALADTKVDMKVLSQRLGLGKGGL   84 (231)
Q Consensus         6 ~~v~~~L~~~~I~~~~~~h~-~~~Tiee~a~~~g~~~~~ivKtLvlk~kk~~~vLVvv~gd~~vd~kkL~k~lG~kr~~l   84 (231)
                      ++|.++|+++||+|+.++|+ +..|++|+|+++|+++++++|||+|++++++|+++++++|+++|++++++++|.   ++
T Consensus         1 erv~~~L~~~~i~~~~~~~~~~~~t~~e~a~~lgv~~~~i~Ktlv~~~~~~~~~l~vv~gd~~vd~~kl~~~~g~---~l   77 (150)
T d1wdva_           1 EKVEEWIKARGLTWRLLIMQKPTRTVAEAAALLGVSESEIVKTLIVLDNAGGVYAVVIPGDKRLNINSMKELAGK---PV   77 (150)
T ss_dssp             CHHHHHHHHHTCCCEEEECSSCCSSHHHHHHHHTSCGGGBEEEEEEEETTSCEEEEEEETTCCBCHHHHHHHHTS---CE
T ss_pred             ChHHHHHHhCCCCcEEEECCCCCCcHHHHHHHcCCCHHHhEeeEEEEecCCCEEEEEeccceEecHHHhhhhhhc---cc
Confidence            47999999999999999987 688999999999999999999999999878999999999999999999999983   49


Q ss_pred             eeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCEEEEc
Q 026877           85 RMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL  164 (231)
Q Consensus        85 r~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~~vd~  164 (231)
                      +||+++++.++|||.+|+|+|||+.+    ++++|+|+++...+.+|+++|+++..+.|+++||.++.+     ..++|+
T Consensus        78 ~~a~~~e~~~~tG~~~G~v~P~g~~~----~~~v~iD~~l~~~~~v~~~aG~~~~~~~i~~~dL~~~~~-----~~~~di  148 (150)
T d1wdva_          78 RLARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADV  148 (150)
T ss_dssp             EECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECC
T ss_pred             ccCCHHHHHHhcCCCcceeecccCCC----CCeEEEEhHHhcCCeEEEeCCCCCeEEEECHHHHHHHHC-----CEEEec
Confidence            99999999999999999999999986    799999999999999999999999999999999999987     568887


Q ss_pred             cC
Q 026877          165 EA  166 (231)
Q Consensus       165 ~~  166 (231)
                      ++
T Consensus       149 ~~  150 (150)
T d1wdva_         149 SE  150 (150)
T ss_dssp             BC
T ss_pred             cC
Confidence            63

>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein HI1434 (YbaK homologue)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=1.3e-31  Score=217.11  Aligned_cols=150  Identities=15%  Similarity=0.231  Sum_probs=135.7

Q ss_pred             HHHHHHHhCCCCeEEEE--cCCCC--CHHHHHHHhCCCCCceeEEEEEEec--CCcEEEEEEcCCCccCHHHHHHHhCCC
Q 026877            7 QLLARLKDLQIEFSQYE--HPAVM--TVEAQAKYVGNIGGGLSKNLFLKDK--KHRFYIVSALADTKVDMKVLSQRLGLG   80 (231)
Q Consensus         7 ~v~~~L~~~~I~~~~~~--h~~~~--Tiee~a~~~g~~~~~ivKtLvlk~k--k~~~vLVvv~gd~~vd~kkL~k~lG~k   80 (231)
                      .+.++|+++||+|+.++  |++..  +.+++|+.+|+++++++|||+|+.+  +++|+++++++|+++|++++++.+|.+
T Consensus         2 ~a~~~L~~~~I~y~~~~~~h~~~~~~~~~e~A~~lg~~~~~i~Ktlv~~~~~~~~~~~~~v~~~d~~vd~~kl~~~~~~~   81 (157)
T d1dbxa_           2 PAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIGVK   81 (157)
T ss_dssp             HHHHHHHHHTCCCEEEECCCCC-----CCHHHHHHTCCGGGBEEEEEEEETTCTTSEEEEEEETTSCBCHHHHHHHHTCS
T ss_pred             HHHHHHHHCCCCCEEEeeecCCCccchHHHHHHHcCCCccceeEEEEEEeecCCCeEEEEEeCCCCEECHHHHHHHhCCc
Confidence            46789999999999984  66643  4588999999999999999999974  357999999999999999999999987


Q ss_pred             CCcceeCCHHHHHHHhCCCcccccccccCCCCCCCeEEEEeccccCCCeEEEecCCCCceEEEcHHHHHHHHHhcCCCCE
Q 026877           81 KGGLRMAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPA  160 (231)
Q Consensus        81 r~~lr~Aseeel~~~lG~~~G~VsPfgl~~d~~~~v~vivD~~L~~~~~v~~~~G~~~~tl~is~~dL~kll~~~g~~~~  160 (231)
                        +++||++|++.++|||.+|+|+|||+.+    ++++|+|+++...+.||+++|+++.++.|+++||.++++     ..
T Consensus        82 --~~~~a~~e~~~~~tG~~~G~v~P~g~~~----~i~v~iD~~l~~~~~v~~~aG~~~~~i~i~~~dl~~l~~-----~~  150 (157)
T d1dbxa_          82 --KVEMADKDAAQKSTGYLVGGISPLGQKK----RVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----AE  150 (157)
T ss_dssp             --CEEECCHHHHHHHHSCCTTCCCSSSCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----CE
T ss_pred             --ccccCCHHHHHHccCCccceeecccccc----cchHHHhHHHhhCCEEEEeCCCCCeEEEECHHHHHHHhC-----CE
Confidence              5999999999999999999999999986    799999999999999999999999999999999999997     57


Q ss_pred             EEEccCC
Q 026877          161 YVDLEAN  167 (231)
Q Consensus       161 ~vd~~~~  167 (231)
                      +.|++++
T Consensus       151 v~di~e~  157 (157)
T d1dbxa_         151 FTDIVDE  157 (157)
T ss_dssp             EECCBCC
T ss_pred             EEeeecC
Confidence            8888764