Citrus Sinensis ID: 026897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELFLHS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTfiyyrnrtrppltvSIICKIFGLGLISCCVQTCLYvgigyssptlssaivdlTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKgpalvsmssssnlhnelrspqknwiIGGLVLAAGSFFLSLLYIVQVTfdktpkiptyslidfwdfylpyissgkelflhs
Flexible Loop (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELFLHS
Low Complexity Region (SEG)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELFLHS
Disordered region (IsUnstruct)
**SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV****************KNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELF***
Disordered Region (DISOPRED)
****GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS******************IIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELFLHS
Disordered Region (DISEMBL)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELFLHS
Disordered Region (DISPRO)
*WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS************KNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELFLHS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (MEMSAT)
ooooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSGKELFLHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
Q9FL08	368	WAT1-related protein At5g	yes	no	0.813	0.510	0.471	2e-37
Q94JU2	367	WAT1-related protein At3g	no	no	0.943	0.594	0.467	4e-37
Q945L4	339	WAT1-related protein At5g	no	no	0.818	0.557	0.475	8e-37
F4KHA8	370	WAT1-related protein At5g	no	no	0.805	0.502	0.455	2e-33
F4JK59	347	WAT1-related protein At4g	no	no	0.774	0.515	0.454	3e-27
Q9LRS5	353	WAT1-related protein At3g	no	no	0.805	0.526	0.432	8e-27
Q56X95	355	WAT1-related protein At3g	no	no	0.818	0.532	0.417	9e-26
Q9SUF1	384	WAT1-related protein At4g	no	no	0.831	0.5	0.355	1e-24
F4I5D5	375	WAT1-related protein At1g	no	no	0.839	0.517	0.349	1e-22
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.800	0.486	0.343	2e-22

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/195 (47%), Positives = 127/195 (65%), Gaps = 7/195 (3%)

Query: 8   AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLT 67
           A M AVEC  VGS+TL KAA  +G S +V + YS   + + +LLP + I+ R+R  P   
Sbjct: 22  AAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTL-LLLPLSVIFGRSRRLPAAK 80

Query: 68  VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             +  KIF LGL+    Q     GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR 
Sbjct: 81  SPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQVRLRS 140

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS------SSNLHNELRSPQKNWIIGGLV 181
            ++ AK IG ++SI+GAL V LYKGP +++ +S      +  LH +L S + +WIIGGL+
Sbjct: 141 SATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWIIGGLL 200

Query: 182 LAAGSFFLSLLYIVQ 196
           LA+  F +S+ YI+Q
Sbjct: 201 LASQYFLISVWYILQ 215

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/229 (46%), Positives = 142/229 (62%), Gaps = 11/229 (4%)

Query: 6   VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
           VTA +V +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct: 13  VTA-LVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query: 66  LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
           +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct: 71  MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query: 126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
           +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct: 131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query: 185 GSFFLSLLYIVQVTFDKT-PKIPT----YSL-IDFWDFYLPYISSGKEL 227
             F + L YIVQ    +  P   T    YS+ + FW   +   + G +L
Sbjct: 189 EYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDL 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  153 bits (387), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 97/204 (47%), Positives = 129/204 (63%), Gaps = 15/204 (7%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PPLT S
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPPLTFS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L  +S
Sbjct: 76  ILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           S+AK +GT++SI GAL VTLY GP L  MSS S           +WIIGG +LA     +
Sbjct: 136 SVAKVLGTILSIIGALVVTLYHGPML--MSSHS-----------DWIIGGGLLALQYILV 182

Query: 190 SLLYIVQV-TFDKTPKIPTYSLID 212
           S+ Y+V   T  + P     +L+ 
Sbjct: 183 SVSYLVMAHTMGRYPSAVVVTLVH 206

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 123/193 (63%), Gaps = 7/193 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  P     
Sbjct: 25  MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRLPSAKTP 83

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++ LR  +
Sbjct: 84  VFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQIVLRSSA 143

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSS------SSNLHNELRSPQKNWIIGGLVLA 183
           + AK IGT+VSI+GAL V LYKGP +++ +S      + +L+  L S   +WIIGGL+LA
Sbjct: 144 TQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWIIGGLLLA 203

Query: 184 AGSFFLSLLYIVQ 196
                +S+ YI+Q
Sbjct: 204 TQYLLVSVWYILQ 216

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  121 bits (304), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 118/187 (63%), Gaps = 8/187 (4%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A+EC  VGSS L KAA  +G S +V + Y+    A  +LL  + I+ R+R+ P    S
Sbjct: 21  MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYV-GATLVLLLLSLIFGRSRSLPTAKSS 79

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           +  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++ LR  +
Sbjct: 80  LFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQVMLRSSA 139

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189
           + AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L      L
Sbjct: 140 TQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLGLQFLLL 192

Query: 190 SLLYIVQ 196
           S+ +I+Q
Sbjct: 193 SVWFILQ 199

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRS5|WTR22_ARATH WAT1-related protein At3g28100 OS=Arabidopsis thaliana GN=At3g28100 PE=2 SV=1

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 6/192 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +L  S F   R+R+ PPL++S
Sbjct: 18  MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLP-SLFFTDRSRSLPPLSLS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-----LRSPQKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V LY GP +   SS   ++       L S   +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQ 196
              F+S+ +I+Q
Sbjct: 197 RDIFVSVSFILQ 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  117 bits (292), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/199 (41%), Positives = 120/199 (60%), Gaps = 10/199 (5%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+ P L++S
Sbjct: 17  MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRSLPSLSLS 75

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK   + +S
Sbjct: 76  ILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEKASFKEKS 135

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRS-------PQKNWIIGGLVL 182
           S+AK +GT+VS+ GAL V LY GP + + SS      +LR           +WIIGG +L
Sbjct: 136 SVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPP--FPQLRQLLLPLSSSNSDWIIGGCLL 193

Query: 183 AAGSFFLSLLYIVQVTFDK 201
           A     + + +I+Q    K
Sbjct: 194 AIKDTLVPVAFILQAHIMK 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUF1|WTR31_ARATH WAT1-related protein At4g08290 OS=Arabidopsis thaliana GN=At4g08290 PE=2 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 116/200 (58%), Gaps = 8/200 (4%)

Query: 9   VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
           +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct: 16  LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query: 69  SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
           S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct: 74  SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query: 128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
             S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct: 134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query: 183 AAGSFFLSLLYIVQVTFDKT 202
             G    S  Y++Q    KT
Sbjct: 194 LLGCVAWSGFYVLQSITIKT 213

Arabidopsis thaliana (taxid: 3702)

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/209 (34%), Positives = 119/209 (56%), Gaps = 15/209 (7%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN-RTRPPL-T 67
           M  +E   +  + + K A+  G S FV +VY+NAF +I +LLP +F+++RN RT   + +
Sbjct: 16  MAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSI-LLLPFSFLFHRNERTEQSIFS 74

Query: 68  VSIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLR 126
             ++ ++F LG     + Q   +VG+ +SSP +  A+    P+F+F+L++I    KLD R
Sbjct: 75  WPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSKLDWR 134

Query: 127 VQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQK---------NWII 177
             S+ AK +GT+VS++GA    LYKGP  +  +SS++ +  L+S  K         NW +
Sbjct: 135 NTSTRAKLMGTIVSLSGAFVEELYKGP-FIRPASSASPNRFLKSVPKLLVYYNLPDNWFL 193

Query: 178 GGLVLAAGSFFLSLLYIVQV-TFDKTPKI 205
           G + LA   F +SL  +VQ  T  K P +
Sbjct: 194 GCIFLAVAVFSVSLFNVVQTGTVKKYPHV 222

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 110/189 (58%), Gaps = 4/189 (2%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           MV ++    G   L+KA +NKG S++VL+VY +A A I ++ P  F Y+  + RP +T+ 
Sbjct: 19  MVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATI-VMAPFAF-YFDKKVRPKMTLM 76

Query: 70  IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
           I  KI  LGL+   + Q   Y+G+ Y++ T ++A+ ++ PA TF+LA I  +E++ LR  
Sbjct: 77  IFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLRCI 136

Query: 129 SSLAKSIGTMVSIAGALTVTLYKGPAL-VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSF 187
            S  K +GT+ ++ GA+ +TL KGP L +  +   + HN   +   + I G +++  G F
Sbjct: 137 RSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAIKGAVLVTIGCF 196

Query: 188 FLSLLYIVQ 196
             +   I+Q
Sbjct: 197 SYACFMILQ 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
255581150	348	Auxin-induced protein 5NG4, putative [Ri	0.844	0.560	0.604	7e-57
296086520	350	unnamed protein product [Vitis vinifera]	0.865	0.571	0.544	8e-56
359473431	348	PREDICTED: auxin-induced protein 5NG4-li	0.852	0.566	0.572	2e-54
225424734	341	PREDICTED: auxin-induced protein 5NG4-li	0.826	0.560	0.549	1e-53
225424732	351	PREDICTED: auxin-induced protein 5NG4 [V	0.865	0.569	0.512	4e-52
255581154	354	Auxin-induced protein 5NG4, putative [Ri	0.839	0.548	0.577	1e-51
359811343	350	uncharacterized protein LOC100804032 [Gl	0.844	0.557	0.530	5e-49
356509316	351	PREDICTED: auxin-induced protein 5NG4-li	0.844	0.555	0.525	1e-48
356502006	349	PREDICTED: auxin-induced protein 5NG4-li	0.826	0.547	0.568	5e-46
356567988	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.844	0.555	0.510	5e-46

>gi|255581150|ref|XP_002531388.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528981|gb|EEF30972.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 119/197 (60%), Positives = 148/197 (75%), Gaps = 2/197 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTA MVA E  EVG +T+ KAAM++G S FV  VYSNAFA + IL+PS+FI+YR 
Sbjct: 1   MWGTGVTAAMVATEFTEVGINTMMKAAMSRGMSQFVYTVYSNAFA-LLILIPSSFIFYRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R RP LTVSII + F LGL+SCCVQ  +  G+ YSSPTLS+A++DLTPAFTF+LA+ISRM
Sbjct: 60  RPRPQLTVSIIFRTFLLGLLSCCVQMFMNTGVKYSSPTLSAAMIDLTPAFTFLLAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNELRSPQKNWIIGG 179
           EKLD + QS+ AKSIGT+VS+AGAL VTLYKG  + ++ S SN L+  L      W+ GG
Sbjct: 120 EKLDYKSQSTQAKSIGTIVSVAGALIVTLYKGQPITTLPSESNSLNQPLLLLSSTWVTGG 179

Query: 180 LVLAAGSFFLSLLYIVQ 196
           +   AG+  L+LLYIVQ
Sbjct: 180 IFCTAGALCLALLYIVQ 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086520|emb|CBI32109.3| unnamed protein product [Vitis vinifera]

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 155/202 (76%), Gaps = 2/202 (0%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  +  VM+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R 
Sbjct: 1   MWSFKLMLVMLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           +T PPLT SI+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RM
Sbjct: 60  KTPPPLTTSILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGG 179
           E LDLRV+SS AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG
Sbjct: 120 ENLDLRVRSSRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQVTFDK 201
           ++ A  +F L++L++ Q +  +
Sbjct: 180 ILSAIAAFMLAVLFVFQTSIIR 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473431|ref|XP_002265468.2| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 147/199 (73%), Gaps = 2/199 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MWS  + A+M+ +ECLEVG STL+KAAM +G SDFV +VYSNA + + ILL    +++R 
Sbjct: 1   MWSSDLMALMLIIECLEVGLSTLSKAAMRRGMSDFVFVVYSNALS-VPILLFCCLLFHRR 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT+SI+C+IF LG ISC  Q  L+VGI YSSPTL+SA+ DL PAFTFILA+ISRM
Sbjct: 60  RFPPPLTLSILCRIFILGFISCSTQMFLFVGIRYSSPTLASAMTDLVPAFTFILAIISRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-LRSPQKNWIIGG 179
           EKLDL+  S  AK IGT+VSI GAL VT+YKGP +   SS+  + +E LRS   NW+IGG
Sbjct: 120 EKLDLKAGSCRAKCIGTIVSIIGALIVTIYKGPQIAFASSTFKILDENLRSQISNWVIGG 179

Query: 180 LVLAAGSFFLSLLYIVQVT 198
            +LA  +  ++L Y+VQ +
Sbjct: 180 FLLAISAVSIALFYVVQTS 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424734|ref|XP_002266639.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  215 bits (548), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 150/193 (77%), Gaps = 2/193 (1%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+ +E LE+G +T++KAAM++G S+FV +VYSN FA  F+LL S  +++R +T PPLT S
Sbjct: 1   MLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLL-SCLLFHRRKTPPPLTTS 59

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+C+IF LGLISC +Q  +YVGI YSSPTL+SA+ DL PAFTFILA+I+RME LDLRV+S
Sbjct: 60  ILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRMENLDLRVRS 119

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMS-SSSNLHNELRSPQKNWIIGGLVLAAGSFF 188
           S AKSIGT++SI GALT+T+Y+GP +   S +S+ L+  +  PQ NW+IGG++ A  +F 
Sbjct: 120 SRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGGILSAIAAFM 179

Query: 189 LSLLYIVQVTFDK 201
           L++L++ Q +  +
Sbjct: 180 LAVLFVFQTSIIR 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424732|ref|XP_002266096.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086521|emb|CBI32110.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 155/203 (76%), Gaps = 3/203 (1%)

Query: 1   MWSVGVTAV-MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYR 59
           MWS  +TAV ++ +ECL+VG  TL+KAAM +G SD+V +VYSNA A + +L   + +++R
Sbjct: 1   MWSSELTAVILLTIECLDVGLITLSKAAMRRGMSDYVFVVYSNALA-VPVLFLCSLLFHR 59

Query: 60  NRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISR 119
            R+ PPLT SI+C+IF LGL+SC +Q   ++GIGYSSPTL+SA+ +L PAFT++LA+++R
Sbjct: 60  RRSPPPLTPSILCRIFLLGLVSCSLQMLKFIGIGYSSPTLASAMTNLIPAFTYVLAIVTR 119

Query: 120 MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS-SNLHNELRSPQKNWIIG 178
           MEKLDL+V+SS AK +GT+VS+AGAL +T+YKGP +   S++ S L++ L  P+ NWIIG
Sbjct: 120 MEKLDLKVKSSRAKCLGTLVSVAGALLITIYKGPGIEFASTTPSMLNHNLLLPRSNWIIG 179

Query: 179 GLVLAAGSFFLSLLYIVQVTFDK 201
           G + AA +F +++L + Q +  +
Sbjct: 180 GFLTAAAAFMVAVLLVFQTSIIR 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581154|ref|XP_002531390.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528983|gb|EEF30974.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 147/199 (73%), Gaps = 5/199 (2%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           MW  GVTAVM+ +E LEVG +T+ KAAM+KG S ++L+VYSN  A I +LL S+ I+YR 
Sbjct: 4   MWGSGVTAVMLTLEFLEVGMNTVTKAAMSKGMSHYILVVYSNMIA-ISLLLSSSLIFYRK 62

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  P +T+SIIC+IF L L+SC  Q   Y+GIGYSSPTL+SA++DLTPAFTFIL + SRM
Sbjct: 63  RIAPAITLSIICRIFVLSLLSCAGQVFTYIGIGYSSPTLASAMIDLTPAFTFILGVFSRM 122

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN-LHNEL--RSPQKNWII 177
           E+LDLR++S  AKSIGTMV I G L  TLYKG  +  +SSS + LH E+   SP  NW I
Sbjct: 123 ERLDLRIKSGQAKSIGTMVLIIGGLVFTLYKGLPITGISSSGDELHKEMLFLSPS-NWAI 181

Query: 178 GGLVLAAGSFFLSLLYIVQ 196
           GG  LAA S  L+L++++Q
Sbjct: 182 GGFFLAAHSIILALIFVIQ 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359811343|ref|NP_001241291.1| uncharacterized protein LOC100804032 [Glycine max] gi|255644380|gb|ACU22695.1| unknown [Glycine max]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 105/198 (53%), Positives = 142/198 (71%), Gaps = 3/198 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           M  +GV A++ ++E L+V   T++KAAM KG +DFV ++YSNAFA   +LLP TF +YR 
Sbjct: 1   MKELGVVAILFSIEFLDVIVYTVSKAAMKKGMNDFVFVMYSNAFATC-LLLPITFFFYRK 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT  I+ ++F  G +SC VQ   + GIGYSSPTL++A+ DL PAFTFILA++ RM
Sbjct: 60  RPLPPLTYFIVAQLFINGFLSCSVQMLRFFGIGYSSPTLATAMSDLIPAFTFILAIVFRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL--HNELRSPQKNWIIG 178
           EKLD +  S+ AKSIGT+VSI GAL +TLYKG A+++   S+ L   N   S Q +W++G
Sbjct: 120 EKLDWKTNSTRAKSIGTLVSITGALIITLYKGQAIINNHPSNKLFPKNLNSSEQFDWVVG 179

Query: 179 GLVLAAGSFFLSLLYIVQ 196
            ++LA  SF LSLL+IVQ
Sbjct: 180 AVLLAGHSFVLSLLFIVQ 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509316|ref|XP_003523396.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 142/198 (71%), Gaps = 3/198 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           M  +GV A+++++E  +V   T++KAAM KG +DFV ++YSNAFA   +LLP TFI+YR 
Sbjct: 1   MKELGVVAILLSIEFFDVIVYTVSKAAMKKGMNDFVFVMYSNAFATC-LLLPITFIFYRK 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  PPLT  I+ ++F  G +SC VQ   + GIGY SPTL++A+ DL PAFTFILA++ RM
Sbjct: 60  RALPPLTYFIVGQLFINGFLSCSVQMLRFFGIGYGSPTLATAMSDLIPAFTFILAIVFRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL--HNELRSPQKNWIIG 178
           E LD +  S+ AKSIGT+VSIAGAL +TLYKG A+++   S+ L     + S Q +W+IG
Sbjct: 120 EILDWKTNSTRAKSIGTLVSIAGALIITLYKGQAVINNHPSNKLFPKKHVSSEQFDWVIG 179

Query: 179 GLVLAAGSFFLSLLYIVQ 196
            ++LA  SF LSLL+IVQ
Sbjct: 180 AVLLAGHSFVLSLLFIVQ 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502006|ref|XP_003519813.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 137/197 (69%), Gaps = 6/197 (3%)

Query: 4   VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
           V V+A MVA   LEVG +TL KAA   G S+FV IVYSN F A+F L+PSTF+Y+R R  
Sbjct: 6   VSVSAAMVATLFLEVGLNTLIKAANTNGMSNFVFIVYSN-FLALFFLIPSTFLYHRKRAP 64

Query: 64  PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
           PP+  SI+ +IF L  +S  VQT  Y GI YSSPTL+SA+ DL PAFTFI A+ISRME L
Sbjct: 65  PPIPSSILWRIFLLCCLSTAVQTLTYTGIAYSSPTLNSAMSDLVPAFTFIFAIISRMENL 124

Query: 124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL----HNELRSPQKNWIIGG 179
           +L+++SS AK IGT++SIAGAL +TLYKG  L   SS  NL         S Q +WIIGG
Sbjct: 125 NLKLRSSHAKIIGTVISIAGALIITLYKGMPLTG-SSMRNLVLGGSEAYLSVQLDWIIGG 183

Query: 180 LVLAAGSFFLSLLYIVQ 196
            +LA  S  LS+L+IVQ
Sbjct: 184 FLLATSSLCLSVLFIVQ 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567988|ref|XP_003552196.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 101/198 (51%), Positives = 139/198 (70%), Gaps = 3/198 (1%)

Query: 1   MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRN 60
           M  +GV A++++VE  +V   T++KAAM K  +D V ++YSNAFA   +LLP TFI+YR 
Sbjct: 1   MKDLGVVAILLSVEFFDVIVYTVSKAAMKKDMNDSVFVMYSNAFATC-LLLPITFIFYRK 59

Query: 61  RTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRM 120
           R  P LT  I+ ++F  G +SC VQ   + GIGY SPTL++A+ DL PAFTFILA++ RM
Sbjct: 60  RALPLLTYFIVGQLFINGFLSCSVQMLRFFGIGYCSPTLATAMSDLIPAFTFILAIVFRM 119

Query: 121 EKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL--HNELRSPQKNWIIG 178
           EKLD + +S+ AKSIGT+VSI GAL +TLYKG A++    S+ L     + S Q +W++G
Sbjct: 120 EKLDWKTKSTRAKSIGTLVSIVGALIITLYKGQAVIKNHPSNKLFPKKHVSSEQFDWVLG 179

Query: 179 GLVLAAGSFFLSLLYIVQ 196
            ++LA  SF LSLL+IVQ
Sbjct: 180 AMLLAGHSFVLSLLFIVQ 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.943	0.594	0.462	4e-42
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.831	0.566	0.468	2.4e-37
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.896	0.586	0.432	2.8e-34
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.826	0.516	0.462	4.6e-34
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.904	0.588	0.419	4.6e-34
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.796	0.530	0.461	4.1e-33
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.831	0.533	0.442	8.5e-33
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.896	0.578	0.4	6.9e-31
TAIR|locus:2132447	384	UMAMIT20 "Usually multiple aci	0.831	0.5	0.355	1.5e-26
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.826	0.475	0.338	2.9e-25

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 106/229 (46%), Positives = 143/229 (62%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             VTA+++ +EC  VG +TL KAA  KG S  V IVYS   AA+ +LLPS F  +R+RT PP
Sbjct:    13 VTALVI-MECANVGLNTLFKAATLKGMSFHVFIVYSYGLAAL-LLLPSLFCSFRSRTLPP 70

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             +  SI+ KI  LG+I CC     Y GI YSSPTL+SAI +LTPAFTF+LA++ RME +  
Sbjct:    71 MNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMESVSF 130

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-NLHNELRSPQKNWIIGGLVLAA 184
             +  SS+AK +GT+VSI GA  VTLY GP +++ S  S +L ++  +P  NWI+G   LA 
Sbjct:   131 KRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNP--NWILGAGFLAV 188

Query:   185 GSFFLSLLYIVQVTFDKT-PKIPT----YSL-IDFWDFYLPYISSGKEL 227
               F + L YIVQ    +  P   T    YS+ + FW   +   + G +L
Sbjct:   189 EYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDL 237

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 97/207 (46%), Positives = 130/207 (62%)

Query:     6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP 65
             +   MV  E   VG +TL KAA +KG S FV++VYS  F ++ +LLP TF  +R+R+ PP
Sbjct:    13 ILTAMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSL-LLLPLTFFSFRSRSLPP 71

Query:    66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDL 125
             LT SI+C +  LGLI+   Q   Y GI YSSPTLSSA+ ++ PAFTFILA++ RME + L
Sbjct:    72 LTFSILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISL 131

Query:   126 RVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAG 185
               +SS+AK +GT++SI GAL VTLY GP L  MSS S+           WIIGG +LA  
Sbjct:   132 GKKSSVAKVLGTILSIIGALVVTLYHGPML--MSSHSD-----------WIIGGGLLALQ 178

Query:   186 SFFLSLLYIVQV-TFDKTPKIPTYSLI 211
                +S+ Y+V   T  + P     +L+
Sbjct:   179 YILVSVSYLVMAHTMGRYPSAVVVTLV 205

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 93/215 (43%), Positives = 131/215 (60%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASL-LLLPSLFFTDRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL++SI+ KI  LGL+        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
             +  + +SS+AK +GT++S+ GAL V LY GP +   SS        L   L S   +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQVTFDKT-PKIPTYSLI 211
             GG +L     F+S+ +I+Q     T P   T S +
Sbjct:   190 GGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFL 224

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 92/199 (46%), Positives = 124/199 (62%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA MVAVEC+ VGS+TL KAA  +G S +V + Y+   A + +LLP + I+ R++  
Sbjct:    20 VPFTA-MVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATL-VLLPLSLIFGRSKRL 77

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P     +   IF L L+          GI YSSPTL+SAI +LTPAFTF LA+I RME++
Sbjct:    78 PSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQI 137

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGP------ALVSMSSSSNLHNELRSPQKNWII 177
              LR  ++ AK IGT+VSI+GAL V LYKGP      +L   S + +L+  L S   +WII
Sbjct:   138 VLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWII 197

Query:   178 GGLVLAAGSFFLSLLYIVQ 196
             GGL+LA     +S+ YI+Q
Sbjct:   198 GGLLLATQYLLVSVWYILQ 216

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 91/217 (41%), Positives = 129/217 (59%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   V  +TL KAA +KG + +  ++YS    +I +LLPS    YR+R+
Sbjct:    11 AVLLTA-MLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSI-VLLPSHIFSYRSRS 68

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              P L++SI+CKI  LGL+        ++GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS-----NLHNELRSPQKNWII 177
                + +SS+AK +GT+VS+ GAL V LY GP + + SS        L   L S   +WII
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   178 GGLVLAAGSFFLSLLYIVQVTFDKTPKIP-TYSLIDF 213
             GG +LA     + + +I+Q    K    P T S   F
Sbjct:   189 GGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYF 225

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 89/193 (46%), Positives = 122/193 (63%)

Query:     4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR 63
             V  TA M+A+EC  VGSS L KAA  +G S +V + Y+   A + +LL S  I+ R+R+ 
Sbjct:    16 VPFTA-MIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLS-LIFGRSRSL 73

Query:    64 PPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123
             P    S+  KIF L L+    +     GI YSSPTLSSAI +LTPAFTFILA+  RME++
Sbjct:    74 PTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQV 133

Query:   124 DLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLA 183
              LR  ++ AK IGT+VSI+GAL + LYKGP L+  +S ++        + +WIIGGL+L 
Sbjct:   134 MLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFTSF-------ESSWIIGGLLLG 186

Query:   184 AGSFFLSLLYIVQ 196
                  LS+ +I+Q
Sbjct:   187 LQFLLLSVWFILQ 199

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 88/199 (44%), Positives = 124/199 (62%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA++V VE   VG STL K A +KG + +  + YS   A++ +LLPS F   R+ +
Sbjct:    15 AVFLTAMLV-VETSVVGISTLFKFATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSSS 72

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+VSI+ KI  LG +        Y+GI YSSPTL+SAI ++TPA TFILA+I RMEK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS--NLHN---ELRSPQKNWII 177
             +  + +SSLAK +GT++S+ GAL V  Y GP +   SS    N       L S   +W+I
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   178 GGLVLAAGSFFLSLLYIVQ 196
             GG +L     F+S+ +I+Q
Sbjct:   193 GGALLTMQGIFVSVSFILQ 211

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 86/215 (40%), Positives = 129/215 (60%)

Query:     3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT 62
             +V +TA M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+
Sbjct:    12 AVFLTA-MLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASL-LLLPSLFFTNRSRS 69

Query:    63 RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEK 122
              PPL+ SI+ KI  LG +         +GI YS+PTL+SAI ++ PA TFILA+I RMEK
Sbjct:    70 LPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILAVIFRMEK 129

Query:   123 LDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWII 177
             +  + +SS+AK +GT++S+ GA  V  Y GP +   SS   L+    SP     + +W+I
Sbjct:   130 VSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSKSDWLI 189

Query:   178 GGLVLAAGSFFLSLLYIVQVTFDKT-PKIPTYSLI 211
             GG +L     F+S+ +I+Q    +  P+  T S++
Sbjct:   190 GGAILTIQGIFVSVSFILQTHIMREYPEAFTVSIL 224

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2132447 UMAMIT20 "Usually multiple acids move in and out Transporters 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 71/200 (35%), Positives = 116/200 (58%)

Query:     9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTV 68
             +M+ ++    G+  +  A +N+G + +V+IVY N  AA+ +L P   I+ R + RP +T+
Sbjct:    16 LMIFLQFGAAGTYIVIMATLNQGQNRYVVIVYRNLVAAL-VLAPFALIFER-KVRPKMTL 73

Query:    69 SIICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRV 127
             S++ KI  LG +   + Q   Y+G+  +S T +SAI+++ P+ TFI+A I RMEK+++  
Sbjct:    74 SVLWKIMALGFLEPVLDQGFGYLGMNMTSATYTSAIMNILPSVTFIIAWILRMEKVNIAE 133

Query:   128 QSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL-----HNELRSPQKNWIIGGLVL 182
               S AK IGT+V + GAL +TLYKGP +    S+ N+     H        NW++G L++
Sbjct:   134 VRSKAKIIGTLVGLGGALVMTLYKGPLIPLPWSNPNMDQQNGHTNNSQDHNNWVVGTLLI 193

Query:   183 AAGSFFLSLLYIVQVTFDKT 202
               G    S  Y++Q    KT
Sbjct:   194 LLGCVAWSGFYVLQSITIKT 213

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 69/204 (33%), Positives = 118/204 (57%)

Query:    10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
             M++++    G + + K ++N G S +VL+VY +A A   ++ P  F + R + +P +T S
Sbjct:    22 MISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATA-VIAPFAFFFER-KAQPKITFS 79

Query:    70 IICKIFGLGLISCCV-QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQ 128
             I  ++F LGL+   + Q   Y+G+ Y+SPT S A+ ++ PA TFILA++ RME LDL+  
Sbjct:    80 IFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKL 139

Query:   129 SSLAKSIGTMVSIAGALTVTLYKGPAL---------VSMSSSSNLHNELRSPQ-KNWIIG 178
                AK  GT+V++AGA+ +T+YKGP +         +  SS +N  +   S   K ++ G
Sbjct:   140 WCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKG 199

Query:   179 GLVLAAGSFFLSLLYIVQVTFDKT 202
              ++L   +   + L+++Q    KT
Sbjct:   200 SILLIFATLAWASLFVLQAKILKT 223

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-38

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  135 bits (342), Expect = 3e-38
 Identities = 84/192 (43%), Positives = 120/192 (62%), Gaps = 6/192 (3%)

Query: 10  MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVS 69
           M+A E   VG STL K A +KG + +  + YS   A++ +LLPS F   R+R+ PPL+VS
Sbjct: 18  MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASL-LLLPSLFFTNRSRSLPPLSVS 76

Query: 70  IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQS 129
           I+ KI  LG +        Y+GI YS+PTL+SAI ++TPA TFILA+I RMEK+  + +S
Sbjct: 77  ILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERS 136

Query: 130 SLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP-----QKNWIIGGLVLAA 184
           S+AK +GT++S+ GAL V  Y GP +   SS   L+    SP       +W+IGG +L  
Sbjct: 137 SVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTI 196

Query: 185 GSFFLSLLYIVQ 196
              F+S+ +I+Q
Sbjct: 197 QGIFVSVSFILQ 208

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PLN00411	358	nodulin MtN21 family protein; Provisional	99.95
PRK11272	292	putative DMT superfamily transporter inner membran	99.86
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.86
PRK11689	295	aromatic amino acid exporter; Provisional	99.83
PRK15430	296	putative chloramphenical resistance permease RarD;	99.83
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.83
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.77
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.75
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.69
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.68
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.61
COG2510	140	Predicted membrane protein [Function unknown]	99.61
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.59
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.57
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.43
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.43
COG2962	293	RarD Predicted permeases [General function predict	99.34
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.28
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.25
PRK11272	292	putative DMT superfamily transporter inner membran	99.25
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.21
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.21
PRK11689	295	aromatic amino acid exporter; Provisional	99.16
PLN00411	358	nodulin MtN21 family protein; Provisional	99.13
KOG2765	416	consensus Predicted membrane protein [Function unk	99.11
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.05
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.04
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.04
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.96
PRK15430	296	putative chloramphenical resistance permease RarD;	98.77
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.77
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.75
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.72
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.72
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.67
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.57
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.55
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.53
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.37
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.31
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.3
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.21
KOG2766	336	consensus Predicted membrane protein [Function unk	98.12
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.01
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.88
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.75
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.73
PRK13499	345	rhamnose-proton symporter; Provisional	97.64
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.54
PRK13499	345	rhamnose-proton symporter; Provisional	97.38
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.14
COG2962	293	RarD Predicted permeases [General function predict	97.12
KOG1443	349	consensus Predicted integral membrane protein [Fun	97.01
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	96.97
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.84
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.77
KOG1580	337	consensus UDP-galactose transporter related protei	96.73
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.68
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.64
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.64
COG2076	106	EmrE Membrane transporters of cations and cationic	96.6
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.47
KOG2765	416	consensus Predicted membrane protein [Function unk	96.45
PRK11431	105	multidrug efflux system protein; Provisional	96.38
KOG1581	327	consensus UDP-galactose transporter related protei	96.35
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.12
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	95.87
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	95.72
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	95.43
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	95.02
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.01
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.62
KOG1581	327	consensus UDP-galactose transporter related protei	94.56
KOG1580	337	consensus UDP-galactose transporter related protei	94.39
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	93.83
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.51
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	90.58
KOG2922	335	consensus Uncharacterized conserved protein [Funct	90.29
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	87.1
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	86.5
KOG4831	125	consensus Unnamed protein [Function unknown]	86.32
KOG1443	349	consensus Predicted integral membrane protein [Fun	84.54
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	82.34

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.95  E-value=3.8e-26  Score=203.06  Aligned_cols=203  Identities=41%  Similarity=0.623  Sum_probs=162.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 026897            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (231)
Q Consensus         2 ~~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (231)
                      ++.++|+.|+...++++...++.|.+++.|++|..+.++|+.+|+++ ++++++.++|+++.++.+++++..+.+.|+++
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g   88 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG   88 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999999999 98887665443322445678888899999888


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCC
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~  161 (231)
                      ...+.+++.|++|+++++++++.+++|+++.+++++++.|+++.+++.++.|++|++++++|+.++...+++.... +++
T Consensus        89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~-~~~  167 (358)
T PLN00411         89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV-ASS  167 (358)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc-ccc
Confidence            6677789999999999999999999999999999999767666666688999999999999999887554432100 000


Q ss_pred             Cc-----ccc-cCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026897          162 SN-----LHN-ELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIP  206 (231)
Q Consensus       162 ~~-----~~~-~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~  206 (231)
                      ++     .+. ++..+..+...|+++++.++++||+|++.+|+..+++|+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~  218 (358)
T PLN00411        168 PPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAA  218 (358)
T ss_pred             cccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            00     000 0011123456799999999999999999999999998764

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.86  E-value=3.4e-20  Score=160.78  Aligned_cols=164  Identities=12%  Similarity=0.109  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 026897            8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQT   86 (231)
Q Consensus         8 ~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~   86 (231)
                      +.++...++||.+++++|.+.++ +||.+++++|+.+++++ ++++...+ | +  ++.++++++.....|.++ ..++.
T Consensus        11 ~~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~-ll~~~~~~-~-~--~~~~~~~~~~~~~~g~~~~~~~~~   84 (292)
T PRK11272         11 GALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGIL-LLAFLLLR-G-H--PLPTLRQWLNAALIGLLLLAVGNG   84 (292)
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHHHHh-C-C--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999885 99999999999999999 88876432 2 1  123456778888889887 78888


Q ss_pred             HHHHhh-cccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCccc
Q 026897           87 CLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (231)
Q Consensus        87 ~~~~gl-~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~  165 (231)
                      +++.+. ++++++.++++.++.|+++.+++++ +|||      +++++++|++++++|+.++... +.            
T Consensus        85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~------~~~~~~~~~~la~~Gv~ll~~~-~~------------  144 (292)
T PRK11272         85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIR------TRKLEWLGIAIGLAGIVLLNSG-GN------------  144 (292)
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hccc------CchhHHHHHHHHHHhHHHHhcC-cc------------
Confidence            999999 9999999999999999999999986 6999      6677899999999999887521 11            


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 026897          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTP  203 (231)
Q Consensus       166 ~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~  203 (231)
                            .+....|+++.++++++||.|.+..||..++.
T Consensus       145 ------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~  176 (292)
T PRK11272        145 ------LSGNPWGAILILIASASWAFGSVWSSRLPLPV  176 (292)
T ss_pred             ------cccchHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                  11235799999999999999999999976543

>TIGR00688 rarD rarD protein

Probab=99.86  E-value=2.5e-20  Score=158.50  Aligned_cols=165  Identities=13%  Similarity=0.047  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCHH-HHHHHHHHHH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVS-IICKIFGLGL   79 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~----~~~~~~~~-~~~~~~~~g~   79 (231)
                      |+++++++++++||.+++++|. .++ +||.++.++|+++++++ +.++...+++++    +.++.+++ ++......|+
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   78 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL   78 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence            6788999999999999999998 454 99999999999999988 777654322211    00111222 3344566676


Q ss_pred             HHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCC
Q 026897           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS  159 (231)
Q Consensus        80 ~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~  159 (231)
                      +...++.+++++++++++++++++.+++|+++++++++++|||      +++++++|++++++|+.++...++       
T Consensus        79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek------~~~~~~l~~~~~~~Gv~li~~~~~-------  145 (256)
T TIGR00688        79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKER------ISRFQFIAVIIATLGVISNIVLKG-------  145 (256)
T ss_pred             HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHcC-------
Confidence            6688899999999999999999999999999999999999999      567789999999999988763111       


Q ss_pred             CCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 026897          160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKT  202 (231)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~  202 (231)
                                  + ..    .+.+++++||++|.+..|+..++
T Consensus       146 ------------~-~~----~~~l~aa~~~a~~~i~~~~~~~~  171 (256)
T TIGR00688       146 ------------S-LP----WEALVLAFSFTAYGLIRKALKNT  171 (256)
T ss_pred             ------------C-ch----HHHHHHHHHHHHHHHHHhhcCCC
Confidence                        1 11    35688999999999999997554

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.86  E-value=5e-20  Score=160.26  Aligned_cols=166  Identities=16%  Similarity=0.168  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCV   84 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~   84 (231)
                      ..+..++++++||.+++++|.+.++ +||.++.++|+.++++. ++++..   +    ++.+++   .....|+.. ...
T Consensus         5 ~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~~---~----~~~~~~---~~~~~g~~~~~~~   72 (299)
T PRK11453          5 DGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFVA---R----PKVPLN---LLLGYGLTISFGQ   72 (299)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHhc---C----CCCchH---HHHHHHHHHHHHH
Confidence            3466889999999999999999886 99999999999998877 665431   2    112222   234456555 566


Q ss_pred             HHHHHHhhcc-cCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCc
Q 026897           85 QTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSN  163 (231)
Q Consensus        85 ~~~~~~gl~~-~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~  163 (231)
                      +.+++.++++ .++++++++.+++|+++.+++++++|||      +++++++|++++++|+.++.. ++.          
T Consensus        73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~------~~~~~~~~~~l~~~Gv~ll~~-~~~----------  135 (299)
T PRK11453         73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGER------LQGKQLAGIALAIFGVLVLIE-DSL----------  135 (299)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHhHHHhcc-ccC----------
Confidence            6678899998 5789999999999999999999999999      667789999999999988762 111          


Q ss_pred             ccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026897          164 LHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIP  206 (231)
Q Consensus       164 ~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~  206 (231)
                            ........|+++.+.++++|++|.+.+||..++.+.+
T Consensus       136 ------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~  172 (299)
T PRK11453        136 ------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRP  172 (299)
T ss_pred             ------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence                  0112235799999999999999999999987766543

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.83  E-value=2.6e-19  Score=155.54  Aligned_cols=178  Identities=14%  Similarity=0.087  Sum_probs=132.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 026897            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (231)
Q Consensus         3 ~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (231)
                      +.+.+++++++.++||.+++..|.+.++ +||..+.++|+.+++++ +.++.   ++++. ++.++    .....+.++ 
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~---~~~~~-~~~~~----~~~~~~~l~~   71 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTV---GFPRL-RQFPK----RYLLAGGLLF   71 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHc---ccccc-ccccH----HHHHHHhHHH
Confidence            5677889999999999999999999886 99999999999999988 77653   12111 12222    223344445 


Q ss_pred             HHHHHHHHHhhcc----cCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCcccc
Q 026897           82 CCVQTCLYVGIGY----SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS  157 (231)
Q Consensus        82 ~~~~~~~~~gl~~----~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~  157 (231)
                      ..++.+++.|+++    +++++++++.++.|+++.+++++++|||      ++++|++|++++++|++++... ++..+.
T Consensus        72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~------~~~~~~~g~~l~~~Gv~li~~~-~~~~~~  144 (295)
T PRK11689         72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQK------ANWLLIPGLLLALAGVAWVLGG-DNGLSL  144 (295)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhHhheecC-Cccchh
Confidence            6777777777754    5778889999999999999999999999      6678899999999999887632 110000


Q ss_pred             CCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026897          158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKI  205 (231)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~  205 (231)
                      ++      .  ..+..+...|+++.++|++|||+|++..||..+++++
T Consensus       145 ~~------~--~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~  184 (295)
T PRK11689        145 AE------L--INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG  184 (295)
T ss_pred             hh------h--hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Confidence            00      0  0011123469999999999999999999998777654

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.83  E-value=2.7e-19  Score=155.48  Aligned_cols=166  Identities=10%  Similarity=-0.001  Sum_probs=130.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CCCCHHHHHHHHHHHH
Q 026897            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-R-PPLTVSIICKIFGLGL   79 (231)
Q Consensus         2 ~~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~   79 (231)
                      ++.|+++.+++++++||.++++.|.. + ++||.++.++|+.++.++ +.++...+++++. + ...+++++.. ...+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHH
Confidence            56788999999999999999999975 5 499999999999999988 7776544322111 0 1123444333 33565


Q ss_pred             HH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccC
Q 026897           80 IS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM  158 (231)
Q Consensus        80 ~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~  158 (231)
                      ++ ..++.++++|++++++++++++.++.|+++.+++++++|||      +++++++|++++++|+.++....+      
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~------~~~~~~~g~~l~~~Gv~li~~~~~------  148 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGER------FRRMQWLAVILAICGVLVQLWTFG------  148 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHHHHHHcC------
Confidence            66 88899999999999999999999999999999999999999      667789999999999998762111      


Q ss_pred             CCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 026897          159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDK  201 (231)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~  201 (231)
                                   + .    ..+.++++++||.|.+..|+..+
T Consensus       149 -------------~-~----~~~~l~aa~~~a~~~i~~r~~~~  173 (296)
T PRK15430        149 -------------S-L----PIIALGLAFSFAFYGLVRKKIAV  173 (296)
T ss_pred             -------------C-c----cHHHHHHHHHHHHHHHHHHhcCC
Confidence                         1 1    13578899999999999988754

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.83  E-value=4.3e-19  Score=150.57  Aligned_cols=156  Identities=13%  Similarity=0.129  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 026897           17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS   95 (231)
Q Consensus        17 wg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~~   95 (231)
                      ||.+++.+|..++++.|+....+.|+..+.++ +.+....  +      .+++++......|.++ .+++.++++|++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~--~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRR--R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHh--c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999887789999999999998888 7765432  2      1234556677888888 99999999999999


Q ss_pred             CccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCch
Q 026897           96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW  175 (231)
Q Consensus        96 sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (231)
                      ++++++++.+++|+++++++++++|||      +++++++|+.++++|+.++.. ++.                  ....
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~------~~~~~~~gi~i~~~Gv~li~~-~~~------------------~~~~  126 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKER------PRKLVLLAAVLGLAGAVLLLS-DGN------------------LSIN  126 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCC------CcHHHHHHHHHHHHhHHhhcc-CCc------------------cccc
Confidence            999999999999999999999999999      556788999999999988762 111                  1234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026897          176 IIGGLVLAAGSFFLSLLYIVQVTFDKTPKIP  206 (231)
Q Consensus       176 ~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~  206 (231)
                      ..|+.+.+.++++|+++.+..|+..++.++.
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~  157 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPE  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCch
Confidence            6799999999999999999999998877654

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.77  E-value=4.9e-17  Score=141.10  Aligned_cols=168  Identities=7%  Similarity=-0.001  Sum_probs=131.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHH
Q 026897            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISC   82 (231)
Q Consensus         3 ~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   82 (231)
                      +.+++..+++++++|+.++.++|.+.++ +||..+.++|+++++++ ++++..  +++   .+.++++++.....|+...
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~--~~~---~~~~~~~~~~~~~~g~~~~   82 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFK--PWR---LRFAKEQRLPLLFYGVSLG   82 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHh--HHh---ccCCHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999986 99999999999999988 776542  121   1234567777777887666


Q ss_pred             HHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCC
Q 026897           83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS  162 (231)
Q Consensus        83 ~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~  162 (231)
                      ..+.++++++++++++.++++.++.|+++.+++    +|+      +.  +..++.+++.|+.++.. .+..        
T Consensus        83 ~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~------~~--~~~~~~i~~~Gv~li~~-~~~~--------  141 (293)
T PRK10532         83 GMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRR------PV--DFVWVVLAVLGLWFLLP-LGQD--------  141 (293)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCC------hH--HHHHHHHHHHHHheeee-cCCC--------
Confidence            677889999999999999999999999998776    244      22  34567788999987652 1110        


Q ss_pred             cccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026897          163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIP  206 (231)
Q Consensus       163 ~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~  206 (231)
                              .+.....|+++.++++++||+|.+..||..+++++.
T Consensus       142 --------~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~  177 (293)
T PRK10532        142 --------VSHVDLTGAALALGAGACWAIYILSGQRAGAEHGPA  177 (293)
T ss_pred             --------cccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Confidence                    111235799999999999999999999998777653

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.75  E-value=3.5e-16  Score=136.14  Aligned_cols=157  Identities=10%  Similarity=0.054  Sum_probs=126.3

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccch
Q 026897           21 STLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLS  100 (231)
Q Consensus        21 ~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a  100 (231)
                      ....|.++++--.|..+++.|+.++.+. +.+... ...+++ ++.++++++.+...|++++..+.+.+++++|++++.+
T Consensus        18 ~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~   94 (302)
T TIGR00817        18 NIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLSWS-SGLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFT   94 (302)
T ss_pred             HHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHHHH-hCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3578988875467999999999998777 655421 111112 4567889999999999987888999999999999999


Q ss_pred             hhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCchhHHHH
Q 026897          101 SAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGL  180 (231)
Q Consensus       101 ~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  180 (231)
                      +++.++.|+++++++++++|||      +++++++|++++++|+.+..  .+                  +......|++
T Consensus        95 ~li~~~~Pv~~~ll~~~~~~e~------~~~~~~~~l~l~~~Gv~l~~--~~------------------~~~~~~~G~~  148 (302)
T TIGR00817        95 HTIKAMEPFFSVVLSAFFLGQE------FPSTLWLSLLPIVGGVALAS--DT------------------ELSFNWAGFL  148 (302)
T ss_pred             HHHHhcchHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHhhhc--CC------------------cccccHHHHH
Confidence            9999999999999999999999      66778999999999997643  11                  1122356999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhc--CCCCC
Q 026897          181 VLAAGSFFLSLLYIVQVTFDK--TPKIP  206 (231)
Q Consensus       181 l~L~aa~~~a~~~v~~k~~~~--~~~~~  206 (231)
                      +.++|+++|++|.+..||..+  ++++.
T Consensus       149 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~  176 (302)
T TIGR00817       149 SAMISNITFVSRNIFSKKAMTIKSLDKT  176 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCcc
Confidence            999999999999999999887  55543

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.69  E-value=4.2e-15  Score=132.18  Aligned_cols=156  Identities=15%  Similarity=0.113  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026897           18 VGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLISCCVQTCLYVGIGY   94 (231)
Q Consensus        18 g~~~~~~K~~~~~g~~-p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~gl~~   94 (231)
                      .......|.+++. +| |.+++++|++++.++ ...+.....++ . ++.  .+++++.++.+|+++...+...+.++++
T Consensus        62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~~~~~~-~-~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~  137 (350)
T PTZ00343         62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWATGFRK-I-PRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGL  137 (350)
T ss_pred             HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHHhCCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445678888886 99 999999999999887 65543221121 1 222  3457788999999984446667799999


Q ss_pred             cCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCc
Q 026897           95 SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKN  174 (231)
Q Consensus        95 ~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (231)
                      ++++.+.++-+++|+++++++++++|||      ++++++++++++++|+.+.+. ++                   ...
T Consensus       138 ~svs~~~iika~~Pvft~lls~~~l~ek------~s~~~~l~l~l~v~Gv~l~~~-~~-------------------~~~  191 (350)
T PTZ00343        138 GAVSFTHVVKAAEPVFTALLSILFLKQF------LNLYAYLSLIPIVGGVALASV-KE-------------------LHF  191 (350)
T ss_pred             ccHHHHHHHHHhhHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHHHHheec-cc-------------------chh
Confidence            9999999999999999999999999999      667889999999999998762 11                   112


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 026897          175 WIIGGLVLAAGSFFLSLLYIVQVTFDKTP  203 (231)
Q Consensus       175 ~~~G~~l~L~aa~~~a~~~v~~k~~~~~~  203 (231)
                      ...|++++++++++|++|++..|+..++.
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~  220 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNK  220 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            46799999999999999999999998764

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.68  E-value=4e-15  Score=128.34  Aligned_cols=168  Identities=13%  Similarity=0.107  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 026897            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ   85 (231)
Q Consensus         7 ~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~   85 (231)
                      .+..++++++|+......|...++ -++  ..+++...+++. +.|+...+.++...+..+++.+. ....+..+ ..++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   77 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVL-LTPYGLWYLAQVGWSRLPATFWL-LLAISAVANMVYF   77 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHH-HHHHHHHhcccCCCCCcchhhHH-HHHHHHHHHHHHH
Confidence            356789999999999999966554 344  347777777777 77766542111111222333333 44444444 8899


Q ss_pred             HHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCccc
Q 026897           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (231)
Q Consensus        86 ~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~  165 (231)
                      .++++|+++++++.++.+.+++|+++.+++++++|||      +++++++|+.+++.|+.++... +.            
T Consensus        78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~------~~~~~~~g~~~~~~Gv~ll~~~-~~------------  138 (281)
T TIGR03340        78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGET------LSPLAWLGILIITLGLLVLGLS-RF------------  138 (281)
T ss_pred             HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHhcc-cc------------
Confidence            9999999999999999999999999999999999999      6677899999999999887631 11            


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 026897          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPK  204 (231)
Q Consensus       166 ~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~  204 (231)
                           .. ....|+.+.++++++|++|.+..|+..++.+
T Consensus       139 -----~~-~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~  171 (281)
T TIGR03340       139 -----AQ-HRRKAYAWALAAALGTAIYSLSDKAAALGVP  171 (281)
T ss_pred             -----cc-cchhHHHHHHHHHHHHHHhhhhccccccchh
Confidence                 01 1235778899999999999999888755544

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.61  E-value=6.5e-14  Score=123.09  Aligned_cols=174  Identities=18%  Similarity=0.185  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026897           14 ECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGI   92 (231)
Q Consensus        14 ~~lwg~~~~~~K~~~~~g~~-p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl   92 (231)
                      +++-..+..++....+.|.+ |..-.+.-+..-.++ ..+...++++.+...+.-+++|...+++|++-..++++.+.|.
T Consensus        22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~  100 (334)
T PF06027_consen   22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY  100 (334)
T ss_pred             HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555555555444544 444444444444444 4555444332211112223455666777877788999999999


Q ss_pred             cccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCC
Q 026897           93 GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQ  172 (231)
Q Consensus        93 ~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~  172 (231)
                      +||+.+.+.++....-+++++++++++|||      +++.|++|++++++|+.++...|....           +++.++
T Consensus       101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~r------y~~~~~~gv~i~i~Gv~lv~~sD~~~~-----------~~~~~~  163 (334)
T PF06027_consen  101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRR------YSWFHILGVLICIAGVVLVVVSDVLSG-----------SDSSSG  163 (334)
T ss_pred             hcccHhHHHhhhhhhhHHHHHHHHHHHHhh------hhHHHHHHHHHHHhhhhheeeeccccc-----------ccCCCC
Confidence            999999999999999999999999999999      677889999999999988775443210           111234


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026897          173 KNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKI  205 (231)
Q Consensus       173 ~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~  205 (231)
                      .+...||++++.++++||+++++.++..++.|.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~  196 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAPR  196 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            567899999999999999999999999998764

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.61  E-value=1e-14  Score=109.23  Aligned_cols=135  Identities=12%  Similarity=0.080  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (231)
                      ..++.+++++.||...++.|+.+++ +||..-++.|.....++ +..++...++.+.....+.|.|..+.+.|+.+.+..
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw   81 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence            4577899999999999999999985 99999999999999888 877776655544322357788888888888779999


Q ss_pred             HHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        86 ~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      .+||.+++.-.++...-+-.++|+++.++++++++||      ++..+|+|+.+..+|++++.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~------ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGER------LSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCC------CCHHHHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999      56677899999999998764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.59  E-value=7e-15  Score=110.36  Aligned_cols=124  Identities=21%  Similarity=0.259  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 026897           15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG   93 (231)
Q Consensus        15 ~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~   93 (231)
                      ++||.+.++.|...++ .||....++|+.++++. +...... +++.. .+.+.+++......|.++ .+++.++++|++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILLLIL-GRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHHhh-ccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4799999999999886 99999999999999853 3333322 23221 455667778888899887 999999999999


Q ss_pred             ccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        94 ~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      ++++++++.+.+++|+++.++++++++|+      +++.+++|+.+.+.|+++++
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~------~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGER------PSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999      66778999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.57  E-value=3.2e-13  Score=115.17  Aligned_cols=174  Identities=21%  Similarity=0.197  Sum_probs=131.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 026897            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (231)
Q Consensus         3 ~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (231)
                      ........+...+.|+.+....|...++..++....+.|...+.+. ..+.... ++... .+.. ++++.....+.++ 
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~   80 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLL-EPRGL-RPAL-RPWLLLLLLALLGL   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHh-hcccc-cccc-cchHHHHHHHHHHH
Confidence            3445677888889999999999998775366666667799888777 5554322 11111 1111 1134455666666 


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchhHHHHHHHH-HHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCC
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS  160 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~-l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~  160 (231)
                      ..++.+++.++++++++.++.+.+++|+++.+++. ++++||      .+++++.|+.+++.|+.++...+..       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~------~~~~~~~~~~~~~~Gv~lv~~~~~~-------  147 (292)
T COG0697          81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGER------LSLLQILGILLALAGVLLILLGGGG-------  147 (292)
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCC------CcHHHHHHHHHHHHhHHheecCCCc-------
Confidence            89999999999999999999999999999999997 667999      5677889999999999988732211       


Q ss_pred             CCcccccCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026897          161 SSNLHNELRSPQKN-WIIGGLVLAAGSFFLSLLYIVQVTFDKTPKI  205 (231)
Q Consensus       161 ~~~~~~~~~~~~~~-~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~  205 (231)
                                 +.. ...|+.+.+.++++|+++.+..|+.. +.++
T Consensus       148 -----------~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~  181 (292)
T COG0697         148 -----------GGILSLLGLLLALAAALLWALYTALVKRLS-RLGP  181 (292)
T ss_pred             -----------chhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCh
Confidence                       111 46899999999999999999999987 5443

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.43  E-value=4.2e-12  Score=107.61  Aligned_cols=130  Identities=20%  Similarity=0.188  Sum_probs=109.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 026897            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (231)
Q Consensus         4 ~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~--p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (231)
                      .++.+..+.++++|+.+....|...++ .|  +.....+|+.++.++ +.+.....++.   ...+.+++..+...++++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence            467888999999999999999998764 66  445666789999888 88776543322   233567777788889888


Q ss_pred             -HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhH
Q 026897           82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA  144 (231)
Q Consensus        82 -~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi  144 (231)
                       ..++.+++++++++++++++.+.+++|++++++++++++|+      ++..+++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~------~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGET------LSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHhc
Confidence             89999999999999999999999999999999999999999      6677899999999886

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.43  E-value=6.5e-12  Score=109.02  Aligned_cols=168  Identities=14%  Similarity=0.065  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (231)
                      +++..++++++||...+..|...  |.++.++.  |..++.++ +..+....++ .  ++.+++.+..-+..|.+-..++
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~~~~-~--~~~~~~~~~~g~l~G~~w~ig~   73 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAIFVL-P--EFWALSIFLVGLLSGAFWALGQ   73 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHHHhC-C--cccccHHHHHHHHHHHHHHhhh
Confidence            35678899999999999999764  68888876  78888888 6655443222 1  1222333333444444447888


Q ss_pred             HHHHHhhcccCccchhhhcc-chhHHHHHHHHHHhhhccchhhhccchh----hHHHHHHHHhHhHhhhccCCccccCCC
Q 026897           86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSS  160 (231)
Q Consensus        86 ~~~~~gl~~~sa~~a~il~~-l~P~~~~l~a~l~~~E~~~~~~~~~~~~----~~g~~l~~~Gi~ll~~~~~~~~~~~~~  160 (231)
                      ++|+.++++++.+.+..+.+ +.|++..+++.+++|||      .++++    ++|+++.+.|++++...++...     
T Consensus        74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~------~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~-----  142 (290)
T TIGR00776        74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEW------STSIQTLLGLLALILIIIGVYLTSRSKDKSA-----  142 (290)
T ss_pred             hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhc------cchHHHHHHHHHHHHHHHhHheEEecccccc-----
Confidence            99999999999999998888 88999999999999999      45566    9999999999988753221100     


Q ss_pred             CCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 026897          161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTF  199 (231)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~  199 (231)
                            + +.+..+...|.++.+.++++|+.|.+..|+.
T Consensus       143 ------~-~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~  174 (290)
T TIGR00776       143 ------G-IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF  174 (290)
T ss_pred             ------c-cccccchhhHHHHHHHHHHHHHHHHHHHHHc
Confidence                  0 0000233579999999999999999999876

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.34  E-value=1.1e-10  Score=99.34  Aligned_cols=163  Identities=13%  Similarity=-0.015  Sum_probs=128.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHH
Q 026897            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSIICKIFGLGLI   80 (231)
Q Consensus         3 ~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~   80 (231)
                      ..|+++..+.+.++||..+...|.. +. .++.++...|.+-+..+ ++.+....++++.  ...++++.+..+...+++
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence            3588999999999999999999965 54 99999999999999888 6665544333221  113445566666666666


Q ss_pred             HHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCC
Q 026897           81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS  160 (231)
Q Consensus        81 ~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~  160 (231)
                      -..+...|.++.++-..-+++.=.+++|++.++++.+++|||      .+|.|++++.++.+|+.......+        
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkEr------ls~~Q~iAV~lA~~GV~~~~~~~g--------  147 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKER------LSRLQWIAVGLAAAGVLIQTWLLG--------  147 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            688889999999999999999999999999999999999999      678899999999999987664322        


Q ss_pred             CCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 026897          161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVT  198 (231)
Q Consensus       161 ~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~  198 (231)
                                  +-.+.    .+.=+++|+.|...-|+
T Consensus       148 ------------~lpwv----al~la~sf~~Ygl~RK~  169 (293)
T COG2962         148 ------------SLPWV----ALALALSFGLYGLLRKK  169 (293)
T ss_pred             ------------CCcHH----HHHHHHHHHHHHHHHHh
Confidence                        12222    35668899999976544

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.28  E-value=1.5e-10  Score=100.49  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (231)
                      .+.+..++++++|+.+.+..|...++ .+|..... -..++++. +.++......  . ...+...+.....+|+++ .+
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999988654 78877754 44566666 6666543222  1 224555556667899998 89


Q ss_pred             HHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhc
Q 026897           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (231)
Q Consensus        84 ~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~  150 (231)
                      ++.+|+++++++++++++.+.+++|+++.++++++++|+      ++..+++|..+.+.|++.....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~------~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGET------LTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999      6678899999999999887643

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.25  E-value=1.6e-11  Score=91.98  Aligned_cols=103  Identities=21%  Similarity=0.322  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHH
Q 026897           39 VYSNAFAAIFILLPSTFIYYRNRTR-PPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL  116 (231)
Q Consensus        39 ~~R~~~a~i~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~  116 (231)
                      .+|+.++.++ +..+...++|.++. +..+++.+......|+++ ..++.++++|+++++ +..+.+.+++|+++.++++
T Consensus         2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~   79 (113)
T PF13536_consen    2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW   79 (113)
T ss_pred             HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence            5899999999 77776654332110 112234455666778887 699999999999999 5888999999999999999


Q ss_pred             HHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897          117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus       117 l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      +++|||      .++++++|+.++++|++++..
T Consensus        80 ~~~~er------~~~~~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   80 LFFKER------LSPRRWLAILLILIGVILIAW  106 (113)
T ss_pred             HHhcCC------CCHHHHHHHHHHHHHHHHHhh
Confidence            999999      566789999999999999874

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.25  E-value=1.6e-10  Score=100.28  Aligned_cols=135  Identities=13%  Similarity=0.013  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (231)
                      .+.+..++++++|+.+....|...+  -++.....++..++++. +.++......... ...+.+.+..+.+.++++ .+
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHH
Confidence            4778889999999999999998643  34566778888888888 7776543222111 123567788889999998 89


Q ss_pred             HHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        84 ~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      ++.+|++++++.++++++.+.+++|++++++++++++|+      ++..+++|..+.+.|+++...
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~------~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGET------LSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999      667789999999999988763

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.21  E-value=1.5e-09  Score=90.66  Aligned_cols=177  Identities=11%  Similarity=0.043  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (231)
                      +++.++.++..-=....+.|...+. ++|...+++|..+++++ ++++.  |..  + .+.+++++..+...|..-..-+
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~--RPw--r-~r~~~~~~~~~~~yGvsLg~MN   85 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALF--RPW--R-RRLSKPQRLALLAYGVSLGGMN   85 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHh--hHH--H-hccChhhhHHHHHHHHHHHHHH
Confidence            5677777777766778889998887 99999999999999999 77653  222  2 4566777788888887656667


Q ss_pred             HHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCccc
Q 026897           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (231)
Q Consensus        86 ~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~  165 (231)
                      .+||.+++.++-+.+..+.++-|+.+..++    ..|        .+..+.+.+.+.|+.++.-. ++            
T Consensus        86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr--------~~d~vwvaLAvlGi~lL~p~-~~------------  140 (292)
T COG5006          86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRR--------LRDFVWVALAVLGIWLLLPL-GQ------------  140 (292)
T ss_pred             HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccc--------hhhHHHHHHHHHHHHhheec-cC------------
Confidence            788899999999999999999999876543    222        23456788889999887622 21            


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHhhhh
Q 026897          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPY  220 (231)
Q Consensus       166 ~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~  220 (231)
                          +....+..|..+.+.++.||++|++..||.-+..+..  +.+..-+.....
T Consensus       141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~--~g~a~gm~vAav  189 (292)
T COG5006         141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHGT--AGVAVGMLVAAL  189 (292)
T ss_pred             ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCCc--hHHHHHHHHHHH
Confidence                1233457899999999999999999999987655443  334444444433

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.21  E-value=2.6e-12  Score=107.66  Aligned_cols=178  Identities=15%  Similarity=0.198  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026897            9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCL   88 (231)
Q Consensus         9 ~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (231)
                      ++..+ ..+..+.+..+..++  .||....-.|+++-.+. ..|...+++....-++..|   +++++.|+.|..+..+.
T Consensus        42 l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tgvmlm  114 (346)
T KOG4510|consen   42 LLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTGVMLM  114 (346)
T ss_pred             ehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhh-hheEEEEEeeeeecCCCcE---EEEEeehhhhhhHHHHH
Confidence            33444 555555555555543  68999999997776666 5554433222111011122   34567788886666778


Q ss_pred             HHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccC
Q 026897           89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNEL  168 (231)
Q Consensus        89 ~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~  168 (231)
                      +++++|++-++|++++..+|+++.+++|.++|||      +++...+|..+.+.|+++++   +|.+.++...   +.++
T Consensus       115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~------~t~~eaL~s~itl~GVVLIv---RPpFlFG~~t---~g~~  182 (346)
T KOG4510|consen  115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEP------FTKFEALGSLITLLGVVLIV---RPPFLFGDTT---EGED  182 (346)
T ss_pred             HHHHhhcchhheEEEEecChHHHHHHHHHHHcCC------CcHHHHHHHHHhhheEEEEe---cCCcccCCCc---cccc
Confidence            8999999999999999999999999999999999      78888999999999999887   3433333210   0111


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 026897          169 RSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKI  205 (231)
Q Consensus       169 ~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~  205 (231)
                      .+.-.....|.+..+.+++.-|...++.|++-|+.+.
T Consensus       183 ~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~  219 (346)
T KOG4510|consen  183 SSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA  219 (346)
T ss_pred             cccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE
Confidence            1111334567888889999999989999998777653

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.16  E-value=6.7e-10  Score=96.52  Aligned_cols=132  Identities=16%  Similarity=0.091  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV   84 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (231)
                      .+.+.++.++++|+.+.+..|...++ .++.....   ..+++. +.+.....+. .. ...+...+..+...++...+.
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~t~~~  228 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALA-LWIKYFLSPQ-PA-MVFSLPAIIKLLLAAAAMGFG  228 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHH-HHHHHHHhcC-cc-ccCCHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999987554 78876532   333444 4433222221 11 234556677777777533889


Q ss_pred             HHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        85 ~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      +++|+++++++++++++.+.+++|+++.++++++++|+      ++..+++|.++.+.|+++...
T Consensus       229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~------~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTP------LSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999999999999999      667789999999999987653

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.13  E-value=2.2e-09  Score=95.85  Aligned_cols=136  Identities=13%  Similarity=0.091  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCHHHHHHHHHHHHHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLIS   81 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~g~~p-~~l~~~R~~~a~i~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~   81 (231)
                      +.+.++.++++|+.+.+..|...+. .+| ...+++...++++. +.+......+...   ....+.. ...++..++..
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t  266 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchH-HHHHHHHHHHH
Confidence            5567889999999999999988765 655 46677777777766 5544433222111   0112222 22345555544


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhc
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~  150 (231)
                      .+.+.+|++++++.+|++++.+.+++|++++++++++++|+      ++..+++|.++.+.|++++...
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~------lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDS------LYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHHhh
Confidence            67888999999999999999999999999999999999999      5567789999999999987743

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.11  E-value=4.7e-10  Score=98.17  Aligned_cols=106  Identities=18%  Similarity=0.252  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCC
Q 026897           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS  159 (231)
Q Consensus        80 ~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~  159 (231)
                      +-.+.++.++.++.+|+++...++.+++.+|+.++|..+..||      .+..|.++++++++|+++++..+...     
T Consensus       168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~------ft~sKllav~~si~GViiVt~~~s~~-----  236 (416)
T KOG2765|consen  168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVER------FTLSKLLAVFVSIAGVIIVTMGDSKQ-----  236 (416)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcch------hhHHHHHHHHHhhccEEEEEeccccc-----
Confidence            3378899999999999999999999999999999999999999      66789999999999999988554321     


Q ss_pred             CCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 026897          160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTP  203 (231)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~  203 (231)
                             +++........|+++++++++.||+|.++.||-..++
T Consensus       237 -------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~e  273 (416)
T KOG2765|consen  237 -------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDE  273 (416)
T ss_pred             -------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence                   1123344578999999999999999999999987665

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.05  E-value=2.9e-08  Score=86.64  Aligned_cols=154  Identities=14%  Similarity=0.057  Sum_probs=117.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHH
Q 026897           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF  112 (231)
Q Consensus        33 ~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~  112 (231)
                      .|..+++.++.+..+. ..+.....+++    +.++..++.....+++..++..+.+.+++|+|...-.++-...|+.++
T Consensus        31 ~~~~lt~~q~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm  105 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALF-SFILLSLFKFP----KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVM  105 (303)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHHhcccc----CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence            3889999999998888 66554332211    122233455667777778888999999999999999999999999999


Q ss_pred             HHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHH
Q 026897          113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL  192 (231)
Q Consensus       113 l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~  192 (231)
                      +++.+++++|      ++++|++++++..+|+.+....+.....          +++....++..|.++.+.+.++.+.+
T Consensus       106 i~~~l~~~k~------y~~~~~~~v~li~~Gv~~~~~~~~~~~~----------~~~~~~~~~~~G~~ll~~sl~~~a~~  169 (303)
T PF08449_consen  106 ILGVLILGKR------YSRRQYLSVLLITIGVAIFTLSDSSSSS----------SSNSSSFSSALGIILLLLSLLLDAFT  169 (303)
T ss_pred             HHHHHhcCcc------ccHHHHHHHHHHHhhHheeeeccccccc----------ccccccccchhHHHHHHHHHHHHHHH
Confidence            9999999999      7788899999999999887643322100          00111122334999999999999999


Q ss_pred             HHHHhhhhcCCCCCc
Q 026897          193 YIVQVTFDKTPKIPT  207 (231)
Q Consensus       193 ~v~~k~~~~~~~~~~  207 (231)
                      .+.++|..++++.++
T Consensus       170 ~~~qe~~~~~~~~~~  184 (303)
T PF08449_consen  170 GVYQEKLFKKYGKSP  184 (303)
T ss_pred             HHHHHHHHHHhCCcH
Confidence            999999998887663

; GO: 0055085 transmembrane transport

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.04  E-value=2.5e-09  Score=92.24  Aligned_cols=132  Identities=14%  Similarity=-0.001  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDF----VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~----~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (231)
                      ++....+.++++|+.+.+..|...++ .+|.    ....+.....++. +.+....++++ . ...+...+......+.+
T Consensus       144 ~g~~~~l~aal~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       144 KAYAWALAAALGTAIYSLSDKAAALG-VPAFYSALGYLGIGFLAMGWP-FLLLYLKRHGR-S-MFPYARQILPSATLGGL  219 (281)
T ss_pred             hHHHHHHHHHHHHHHhhhhccccccc-hhcccccHHHHHHHHHHHHHH-HHHHHHHHhcc-c-hhhhHHHHHHHHHHHHH
Confidence            45567889999999999999875432 4443    2333333333222 22222111111 1 11122233344566666


Q ss_pred             H-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhH
Q 026897           81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (231)
Q Consensus        81 ~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~l  146 (231)
                      . .+++.++++++++.++++++.+.+++|+++.++++++++|+      +++.+++|..+.+.|+++
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~------~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNER------WYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHhHHh
Confidence            6 88999999999999999999999999999999999999999      567789999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.04  E-value=8.2e-09  Score=89.81  Aligned_cols=137  Identities=14%  Similarity=0.111  Sum_probs=103.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCCHHHHHHHHHHH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKG--TSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVSIICKIFGLG   78 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g--~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~g   78 (231)
                      .+.++.+.++++|+.+.+..|...++.  .+......+...++.+. +.......++..    .....+.+.+..+.++|
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            467788999999999999999865431  22233444444444443 333222222211    00134667888899999


Q ss_pred             HHH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        79 ~~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      +++ .+++.+|+.++++.++++++.+..++|+++.++++++++|+      ++..+++|..+.+.|+++..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~------~~~~~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDER------LTGLQFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCC------ccHHHHHHHHHHHHHHHHHh
Confidence            999 99999999999999999999999999999999999999999      56678999999999998765

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.96  E-value=4.9e-09  Score=91.19  Aligned_cols=139  Identities=18%  Similarity=0.144  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--------CCH-HHHHH
Q 026897            4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP--------LTV-SIICK   73 (231)
Q Consensus         4 ~~~~~~ll~~~~lwg~~~~~~K~~~~~-g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~--------~~~-~~~~~   73 (231)
                      ..+.+..++++++|+...+..|...++ +.||..+..+...++++. +.|.....+.......        ... ..+..
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            347788899999999999999987651 499999999999999999 8888654321110000        010 11111


Q ss_pred             HHHHHHHH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           74 IFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        74 ~~~~g~~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      ....+... ...+..++.++++++|+++++..++.|++++++++++++|+      .+..+++|..+.+.|+.+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~------lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTK------ISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCC------CchhHHHHHHHHHHHHHHHHH
Confidence            22222222 33445777899999999999999999999999999999999      556789999999999988764

specificities overlap.

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.77  E-value=1.5e-07  Score=81.78  Aligned_cols=131  Identities=12%  Similarity=0.089  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 026897            9 VMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC   87 (231)
Q Consensus         9 ~ll~~~~lwg~~~~~~K~~~~~g-~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (231)
                      ..+.++++|+.+.+..|...++. .++.....+...++.+. ..+...  .............+..+...|+.+.+++.+
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~  229 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY-LFAIAD--SSTSHMGQNPMSLNLLLIAAGIVTTVPLLC  229 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-HHHHcc--CCcccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            46778999999999998864321 22333444444444443 322211  111000111222233444455544889999


Q ss_pred             HHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        88 ~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      +++++++.++++++.+.+++|+++.++++++++|+      ++..+++|..+.+.|+.++.
T Consensus       230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~------~~~~~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEK------PGADKMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999      66778999999988887765

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.77  E-value=2.4e-07  Score=78.62  Aligned_cols=132  Identities=15%  Similarity=0.170  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHh
Q 026897           66 LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (231)
Q Consensus        66 ~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~  145 (231)
                      .++++...+.+-+++.++.+.+.+.++++++|+.-.++.++-.+++++++++++|+|      .++.||+++.+.+.|+.
T Consensus        12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~------ls~~qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRR------LSRRQWLALFLLVAGVV   85 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcc------cchhhHHHHHHHHHHHh
Confidence            345666777788888888999999999999999999999999999999999999999      56678899999999998


Q ss_pred             HhhhccCCccccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026897          146 TVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIP  206 (231)
Q Consensus       146 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~  206 (231)
                      ++...+....  .. .++.+.+.+....+...|.++.++++++-++-.+...|..|+.+.+
T Consensus        86 lv~~~~~~~~--~~-~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s  143 (244)
T PF04142_consen   86 LVQLSSSQSS--DN-SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVS  143 (244)
T ss_pred             eeecCCcccc--cc-ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence            7653222110  00 0000000111234567999999999999999999999999987633

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.75  E-value=3.5e-07  Score=71.34  Aligned_cols=134  Identities=19%  Similarity=0.227  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CC-----CHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP-----PL-----TVS   69 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~------g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~-----~~-----~~~   69 (231)
                      |++..+.+.++.+...+..|..+++      ..++..+..+-...+.++ ++|.....++.+...     ..     +.+
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~   79 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPN   79 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence            3567889999999999999998765      699999999999999999 888776644432100     00     224


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhH
Q 026897           70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (231)
Q Consensus        70 ~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~l  146 (231)
                      .+..+...|+++...+...+.-++++||...++..++-.+.+.++++++++|+      .+..+++|+.+++.|.++
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~------~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEP------ITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCc------CCHHHHHHHHHHHHHHhe
Confidence            45555666677788888999999999999999999999999999999999999      556789999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.72  E-value=5.6e-07  Score=76.56  Aligned_cols=132  Identities=18%  Similarity=0.166  Sum_probs=103.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 026897            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (231)
Q Consensus         4 ~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~-~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (231)
                      ..+....+.++++|+.+.+..|... + .++..... +........ ..+...  ....  ...+.+.+......|+++ 
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~  225 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLL-LLLFFL--SGFG--APILSRAWLLLLYLGVFST  225 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHH-HHHHHh--cccc--ccCCHHHHHHHHHHHHHHH
Confidence            3577888999999999999999776 3 67777777 444422222 222211  1111  234567788888999988 


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      .+.+.+++++++..+++..+.+..++|+++.++++++++|+      ++..+++|.++.+.|+.+..
T Consensus       226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~------~~~~~~~G~~li~~g~~l~~  286 (292)
T COG0697         226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEP------LSPAQLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCC------CcHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999999999999999999      66778999999999998765

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.72  E-value=2.1e-07  Score=80.82  Aligned_cols=129  Identities=12%  Similarity=0.028  Sum_probs=98.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 026897            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (231)
Q Consensus         4 ~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~---~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (231)
                      .|+.+..+++++.|+.+....|..   +.||.+..+....   +++.+++.+.   + +. + +.. .+.....+..|++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~-~-~~~-~~~~~~~~~~Gi~  220 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---I-LA-K-PLK-KYAILLNILPGLM  220 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---h-cc-c-chH-HHHHHHHHHHHHH
Confidence            678999999999999999999965   3789988555554   4444413322   1 11 1 222 2333334447777


Q ss_pred             HHHHHHHHHHhhc-ccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhh----HHHHHHHHhHhHhh
Q 026897           81 SCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVT  148 (231)
Q Consensus        81 ~~~~~~~~~~gl~-~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~----~g~~l~~~Gi~ll~  148 (231)
                      ..+++.+|+.+.+ +.+++.++++.+.+|+.+.+++++++||+      .+++++    +|.++.+.|+.++.
T Consensus       221 ~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~------~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       221 WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEK------KTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccC------CCcceeehhHHHHHHHHHHHHHHh
Confidence            7888889999999 99999999999999999999999999999      556667    99999999998764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.67  E-value=1e-06  Score=78.58  Aligned_cols=138  Identities=14%  Similarity=0.075  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC------CCCCHHH
Q 026897            4 VGVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR-TR------PPLTVSI   70 (231)
Q Consensus         4 ~~~~~~ll~~~~lwg~~~~~~K~~~~~------g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~-~~------~~~~~~~   70 (231)
                      ..+.++.++++++|+...+..|..+++      ..++..+..+...+++++ ++|+....+... ..      ...+...
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            347788999999999999999998763      256777777778899999 888765332110 00      0000101


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhH
Q 026897           71 ICKIFGLGLISCCVQTC----LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (231)
Q Consensus        71 ~~~~~~~g~~~~~~~~~----~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~l  146 (231)
                      +..+....+.+.+.+.+    .+++++++++..+++..++.|++++++++++++|+      .+..+++|..+.+.|+++
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~------lt~~~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQ------VTLLGYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCC------CchHhHHHHHHHHHHHHH
Confidence            11111111222344444    44699999999999999999999999999999999      567789999999999987


Q ss_pred             hh
Q 026897          147 VT  148 (231)
Q Consensus       147 l~  148 (231)
                      -.
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            54

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.57  E-value=2.2e-05  Score=68.90  Aligned_cols=185  Identities=13%  Similarity=0.083  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHhhc--CC-CCC------CCHHHHHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN--RT-RPP------LTVSIICK   73 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~g---~~p~~l~~~R~~~a~i~~l~~~~~~~~~~--~~-~~~------~~~~~~~~   73 (231)
                      -++.++...+.++...+..|.....+   +.|-+.++.--++-.++ .+..++...|.  ++ ...      .++++...
T Consensus        16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            45678888899999999999886655   77888888888777777 66655544221  11 011      13344555


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCC
Q 026897           74 IFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP  153 (231)
Q Consensus        74 ~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~  153 (231)
                      +.+-+++.++.+.+++.++.+.+|+.-.+..++--+-++++..+++++|+      ++.||.++++..+|+.++.....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkL------s~~Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKL------SRLQWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHhccCCC
Confidence            66666677777789999999999999999999999999999999999995      566789999999999987621111


Q ss_pred             ccccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026897          154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIP  206 (231)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~  206 (231)
                      .         .++.+.....+...|...++.+|++=+.-.+...|.+|+-+..
T Consensus       169 ~---------~~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s  212 (345)
T KOG2234|consen  169 P---------TGAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVS  212 (345)
T ss_pred             C---------CCccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence            0         0111122344678999999999999999999999999876543

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.55  E-value=1.2e-06  Score=73.33  Aligned_cols=130  Identities=15%  Similarity=0.107  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (231)
                      .+..+.+.+..+|+.+-+..|.+-+. .+.-.-+.+-+..++++ .+|+-......   .-.+++.+..-...|+++ ++
T Consensus       148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~ag~---~l~~p~ll~laLgvavlSSal  222 (292)
T COG5006         148 VGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQAGP---ALFSPSLLPLALGVAVLSSAL  222 (292)
T ss_pred             HHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhcch---hhcChHHHHHHHHHHHHhccc
Confidence            35667889999999999999988653 66677778888999999 89986532211   335667777778888999 99


Q ss_pred             HHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHh
Q 026897           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (231)
Q Consensus        84 ~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~  145 (231)
                      ++.+...+++..+...-+++++++|.+.++.++++++|++      +..||+|+...+.+..
T Consensus       223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~l------s~~qwlaI~~ViaAsa  278 (292)
T COG5006         223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETL------TLIQWLAIAAVIAASA  278 (292)
T ss_pred             chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999995      5566788877776654

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.53  E-value=1.1e-06  Score=65.60  Aligned_cols=66  Identities=14%  Similarity=0.096  Sum_probs=59.3

Q ss_pred             HHHHH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           77 LGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        77 ~g~~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      .++.+ .+.++++..++++.+.+.+-.+.++.|+++.+++++++|||      ++..|++|+.+.++|++++.
T Consensus        42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~------ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEP------VSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHh
Confidence            34466 88899999999999999999999999999999999999999      56678999999999998765

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.37  E-value=1e-06  Score=71.38  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=86.4

Q ss_pred             HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCC
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS  161 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~  161 (231)
                      ...++.|..+++.+++++++.+..+...|+.+++++.+++|      ....|+++.++++.|++.+... ++        
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~------~~~~kIlaailAI~GiVmiay~-DN--------  128 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDR------FMGFKILAAILAIGGIVMIAYA-DN--------  128 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccc------hhhhhHHHHHHHhCcEEEEEec-cc--------
Confidence            57789999999999999999999999999999999999999      6678899999999999887632 21        


Q ss_pred             CcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 026897          162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPK  204 (231)
Q Consensus       162 ~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~  204 (231)
                               ...+.++|..++..+++.-|+|-++.|+...+-+
T Consensus       129 ---------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn  162 (290)
T KOG4314|consen  129 ---------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNAN  162 (290)
T ss_pred             ---------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence                     2446689999999999999999999999866543

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.31  E-value=1.4e-05  Score=61.20  Aligned_cols=118  Identities=18%  Similarity=0.127  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC   83 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   83 (231)
                      ++++.++.+.++-+...++.|..+++ .+....... . .   . .+. ..   ..   +       ...++.|+.. .+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~---~-~~~-~~---~~---p-------~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I---A-ALL-AF---GL---A-------LRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H---H-HHH-HH---hc---c-------HHHHHHHHHHHHH
Confidence            36778888888888999999998875 444332221 1 1   1 110 00   10   0       1246778887 99


Q ss_pred             HHHHHHHhhcccCccchhhhccchhHHHHHHHHH--HhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        84 ~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l--~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      ++.++.+++++.+++.+.-+.+..+.++.+.++.  +++|+      .+..|++|+.+.++|++++..
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~------ls~~~~iGi~lIi~GV~lv~~  122 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNET------FSLKKTLGVACIMLGVWLINL  122 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999888888875  89999      556779999999999998763

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.30  E-value=2.4e-05  Score=69.13  Aligned_cols=140  Identities=14%  Similarity=0.015  Sum_probs=105.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHH
Q 026897            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLI   80 (231)
Q Consensus         2 ~~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~   80 (231)
                      ++.++.+.++.+++++|.+.+.-+...++ .|+..+...=.+++.++ ..+.+...++.+. ....+.+....+. ...+
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i~~~~w~~~~~~~~v-~~~~  241 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGIESIHWTSQVIGLLV-GYAL  241 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhhhccCCChhhHHHHH-HHHH
Confidence            45678899999999999999999988875 88888888888888888 8776655455432 1223433332222 2223


Q ss_pred             H-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhc
Q 026897           81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (231)
Q Consensus        81 ~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~  150 (231)
                      . ...+.+.-..+++++|+...+=.-+..+++++++.++++|+      +++..++|.++.++|.++....
T Consensus       242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~------~~~ly~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYK------FSWLYILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCcc------ccHHHHHHHHHHHHHhheEEcc
Confidence            3 55556677889999998887777888999999999999999      5567789999999999876543

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.21  E-value=9.5e-06  Score=71.04  Aligned_cols=151  Identities=16%  Similarity=0.157  Sum_probs=115.5

Q ss_pred             HHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccch
Q 026897           23 LNKAAMN--KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLS  100 (231)
Q Consensus        23 ~~K~~~~--~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a  100 (231)
                      ..|..++  +.--|.+++..+...+.+. ....-..+.++.. +..++..+..++-+|++.+++.++-+.++++.+.+..
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~  112 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY  112 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence            4566666  4456888888888777777 5444332222211 2224456677888888888889999999999999999


Q ss_pred             hhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCchhHHHH
Q 026897          101 SAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGL  180 (231)
Q Consensus       101 ~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  180 (231)
                      -.+=.++|.++.++++++.+|+      +++..++.++....|+.+.+..                    +..-+..|..
T Consensus       113 q~iKa~~P~~tvl~~~~~~~~~------~s~~~~lsL~piv~GV~ias~~--------------------e~~fn~~G~i  166 (316)
T KOG1441|consen  113 QTIKALMPPFTVLLSVLLLGKT------YSSMTYLSLLPIVFGVAIASVT--------------------ELSFNLFGFI  166 (316)
T ss_pred             HHHHhhcchhHHHHHHHHhCCC------CcceEEEEEEEeeeeEEEeeec--------------------cccccHHHHH
Confidence            9999999999999999999999      5555667788888888765521                    1224568999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhc
Q 026897          181 VLAAGSFFLSLLYIVQVTFDK  201 (231)
Q Consensus       181 l~L~aa~~~a~~~v~~k~~~~  201 (231)
                      .++.+.++.+...++.|+..+
T Consensus       167 ~a~~s~~~~al~~I~~~~ll~  187 (316)
T KOG1441|consen  167 SAMISNLAFALRNILSKKLLT  187 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999984

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.12  E-value=1.5e-07  Score=78.87  Aligned_cols=183  Identities=14%  Similarity=0.122  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026897           11 VAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLY   89 (231)
Q Consensus        11 l~~~~lwg~~~~~~K~~~~~g~~-p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (231)
                      +++-++=+.++.-.-.+.. |++ |..=.+.-+..=+++ ..++..+|.+ .  .+..|   ...+++|+.-.-++++..
T Consensus        25 iLSL~~t~~a~tss~la~k-~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~~-~--~~~~~---~hYilla~~DVEaNy~vV   96 (336)
T KOG2766|consen   25 ILSLLITSTAFTSSELARK-GINAPTSQTFLNYVLLALV-YGPIMLFRRK-Y--IKAKW---RHYILLAFVDVEANYFVV   96 (336)
T ss_pred             HHHHHHHcchhhhHHHHhc-cCCCccHHHHHHHHHHHHH-HhhHHHhhhH-H--HHHHH---HHhhheeEEeecccEEEe
Confidence            3444444444444444433 233 444556666666677 7777665432 1  22233   335666766656666778


Q ss_pred             HhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCC
Q 026897           90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELR  169 (231)
Q Consensus        90 ~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~  169 (231)
                      .|.|||+-+....+---.-..+.+++|+++|-|      +...|+.|+++|++|++.+++.+-.+            .|.
T Consensus        97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktr------Yrlmki~gV~iCi~GvvmvV~sDV~a------------gd~  158 (336)
T KOG2766|consen   97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTR------YRLMKISGVVICIVGVVMVVFSDVHA------------GDR  158 (336)
T ss_pred             eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHH------HhhheeeeEEeEecceEEEEEeeecc------------ccc
Confidence            899999999888887655566778899999999      67789999999999999888554321            224


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHhhhhh
Q 026897          170 SPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYI  221 (231)
Q Consensus       170 ~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~  221 (231)
                      +++.+...||+++++++-+||..++....+.|+.|..  -.+.+.-...++|
T Consensus       159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~~--elm~~lgLfGaII  208 (336)
T KOG2766|consen  159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADRV--ELMGFLGLFGAII  208 (336)
T ss_pred             cCCCCCccCcEEEEecceeeeeccccHHHHHhcCcHH--HHHHHHHHHHHHH
Confidence            4556778999999999999999999988888887643  3444433333333

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.01  E-value=8.6e-05  Score=63.57  Aligned_cols=133  Identities=11%  Similarity=-0.036  Sum_probs=93.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 026897            2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (231)
Q Consensus         2 ~~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (231)
                      +..|+.+.++.+.+.|..+..+.|..   ++||.+..+-+.+--.+. -..+..+. +++...|..++    -+..|++-
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~-a~i~~~~~-~~~~~~k~~~~----nil~G~~w  205 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIG-AFIFNLFS-KKPFFEKKSWK----NILTGLIW  205 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHH-HHHHhhcc-cccccccchHH----hhHHHHHH
Confidence            35678899999999999999998863   377877777665433333 33333222 21111222222    24566666


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHh
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~  145 (231)
                      .+++.+++.+.+..+.+.+-.+..+.++...+.+.+++||+-++|++  ...++|+++.++|.+
T Consensus       206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            88888999999999999999999999999999999999999655543  334566666666654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.88  E-value=0.0003  Score=60.12  Aligned_cols=110  Identities=12%  Similarity=0.142  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccC
Q 026897           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM  158 (231)
Q Consensus        79 ~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~  158 (231)
                      +.-..+..+.+.|+.+|+++.-..+-...-+|+.+++.-+++.+      .+.+||+|+.....|.+++...+-..    
T Consensus        94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~t------i~~~qWl~i~fv~lGlviVg~~d~~~----  163 (372)
T KOG3912|consen   94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRT------ITGRQWLGILFVSLGLVIVGSLDVHL----  163 (372)
T ss_pred             HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcc------cchhhHHHHHHHHhhhheeeeeeccc----
Confidence            33377888899999999999999998899999999999999999      55678899999999998775332110    


Q ss_pred             CCCCcccccCCC--CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 026897          159 SSSSNLHNELRS--PQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPKIP  206 (231)
Q Consensus       159 ~~~~~~~~~~~~--~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~~~  206 (231)
                              .+.+  ...+.+.|+++++.|-+.-|+..+.-.|.+++++.+
T Consensus       164 --------~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~  205 (372)
T KOG3912|consen  164 --------VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVA  205 (372)
T ss_pred             --------ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence                    0011  124578999999999999999999999998887655

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.75  E-value=0.0011  Score=56.91  Aligned_cols=118  Identities=13%  Similarity=0.038  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhcc-chhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhH
Q 026897           68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (231)
Q Consensus        68 ~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~-l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~l  146 (231)
                      .+.+..-++.|++-.++|.+++.+.++.+.+++.=+.. +.=+.+.++++++++|.-+.+++  ..-.+++++.++|+++
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence            46666777777777999999999999999999987764 55566888999999999554432  1225578888889887


Q ss_pred             hhhccCCccccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 026897          147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTF  199 (231)
Q Consensus       147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~  199 (231)
                      -+..++.+.            ..++..+...|...++++.+.|..|.++.|..
T Consensus       120 ts~~~~~~~------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~  160 (269)
T PF06800_consen  120 TSYQDKKSD------------KSSSKSNMKKGILALLISTIGYWIYSVIPKAF  160 (269)
T ss_pred             hcccccccc------------ccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            664433211            01123345679999999999999999997663

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.73  E-value=0.0006  Score=57.76  Aligned_cols=106  Identities=8%  Similarity=-0.048  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026897            9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCL   88 (231)
Q Consensus         9 ~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   88 (231)
                      ..+.++++|+.+.+..|...++  ++........ ....+ ..+..............+.++|..+...|+.+.+++.++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~  225 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETL-SLMPV-AIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAF  225 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHH-HHHHH-HHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999986432  3333222221 11111 111111111110001122347788888887778899999


Q ss_pred             HHhhcccCccchhhhccchhHHHHHHHHHH
Q 026897           89 YVGIGYSSPTLSSAIVDLTPAFTFILALIS  118 (231)
Q Consensus        89 ~~gl~~~sa~~a~il~~l~P~~~~l~a~l~  118 (231)
                      ++|+++.++++++.+.+++|+++.+++.+.
T Consensus       226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.64  E-value=0.0026  Score=56.48  Aligned_cols=179  Identities=10%  Similarity=-0.012  Sum_probs=113.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHhhc--CCCCCCCHHHHHHHHHHHH
Q 026897            3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPS-TFIYYRN--RTRPPLTVSIICKIFGLGL   79 (231)
Q Consensus         3 ~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~-~~~~~~~--~~~~~~~~~~~~~~~~~g~   79 (231)
                      -.-+++..++++++||+.++-.|...+.+...++.  .-.+++-++ .-.. .....+.  ......+.+.+..-++.|+
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~--v~gi~~wl~-~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWS--VGGIFSWLI-LPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccccCCCchhHHHH--HHHHHHHHH-HHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            45578899999999999999999843322333333  111222222 1110 1111110  0002245566666677777


Q ss_pred             HHHHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhcc---chhhhccchhhHHHHHHHHhHhHhhhccCCcc
Q 026897           80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL  155 (231)
Q Consensus        80 ~~~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~---~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~  155 (231)
                      +-.+++..++.++++.+.+.+.-+ ..+.=+...+++.++++|--   +..+  ...-.+|+++.++|+++.........
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            778999999999999999988866 46888888888999988753   2221  12358899999999988774111000


Q ss_pred             ccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 026897          156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (231)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~  193 (231)
                            ++ +.++..++.+.-.|.+.++.+.+.+++|.
T Consensus       160 ------~~-~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        160 ------RK-MGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             ------cc-cccccccccchHhHHHHHHHHHHHHHHHH
Confidence                  00 00000123456789999999999999999

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.54  E-value=0.0022  Score=55.84  Aligned_cols=136  Identities=18%  Similarity=0.199  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHH--HhhcCC-C--CCCCHHHHHHHHHHHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMN-KGTSDFVLIVYSNAFAAIFILLPSTFI--YYRNRT-R--PPLTVSIICKIFGLGL   79 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~-~g~~p~~l~~~R~~~a~i~~l~~~~~~--~~~~~~-~--~~~~~~~~~~~~~~g~   79 (231)
                      |++.++.+.++-|......+...+ ++.++.+..++-..++.+. ..+....  ...... .  ....+..+..+....+
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPF-LLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            788899999999999999998875 4799999999999999888 7776554  111110 0  0112234445555666


Q ss_pred             HHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        80 ~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      .++..+.+.+.-++..++...+++..+--+++.+++..+++|+      .+..+|+|+.+.+.|..+=.
T Consensus       234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~------~~~~~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHP------LSPLQWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCc------CChHHHHHHHHhHHHHHHHH
Confidence            6677777777889999999999999999999999999999999      56678899999999997644

; GO: 0055085 transmembrane transport

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.38  E-value=0.012  Score=52.38  Aligned_cols=146  Identities=13%  Similarity=-0.025  Sum_probs=92.5

Q ss_pred             chhhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHHHhhc-CCC----CCC
Q 026897            2 WSVGVTAVMVAVECLEVGSS-------TLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRN-RTR----PPL   66 (231)
Q Consensus         2 ~~~~~~~~ll~~~~lwg~~~-------~~~K~~~~~g~~p~~l~~~R~~---~a~i~~l~~~~~~~~~~-~~~----~~~   66 (231)
                      +..|+.+.++++.+.++...       +..+.+.+.|.+|.....-.+.   .++.+..+.++.++.++ +..    .+.
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            34688899999999999988       6666655567888877777665   44444133333332111 110    111


Q ss_pred             -C----HHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhh---hc-cchhHHHHHHHHHHhhhccchhhhccchhhHHH
Q 026897           67 -T----VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSA---IV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGT  137 (231)
Q Consensus        67 -~----~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~i---l~-~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~  137 (231)
                       +    .++...-.+.|+.-+..+.+|..|-...+.+.+.+   +. .+.-++..+.+. ++||+-+..++..+.-++|+
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~  329 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGC  329 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHH
Confidence             2    22222223444444777888888888887666655   55 555577777777 59999662222346678999


Q ss_pred             HHHHHhHhHhh
Q 026897          138 MVSIAGALTVT  148 (231)
Q Consensus       138 ~l~~~Gi~ll~  148 (231)
                      ++.++|.+++.
T Consensus       330 vliI~g~~lig  340 (345)
T PRK13499        330 VVIILAANIVG  340 (345)
T ss_pred             HHHHHHHHHHh
Confidence            99999998775

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.14  E-value=0.0015  Score=48.75  Aligned_cols=109  Identities=14%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-HHHHHHHHHH
Q 026897           11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGL-ISCCVQTCLY   89 (231)
Q Consensus        11 l~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~   89 (231)
                      ++++++||...++.|.+... .++..-.. |. ..-.. .   . +  +       +++    + ...+ ++-.+...|+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~-~~~~~-~---L-l--~-------n~~----y-~ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QL-LQEIK-F---L-L--L-------NPK----Y-IIPFLLNQSGSVLFF   59 (113)
T ss_pred             eeehHHhcCchHHHHHHHhh-cCCccchH-HH-HHHHH-H---H-H--H-------hHH----H-HHHHHHHHHHHHHHH
Confidence            46789999999999998753 44444332 42 22222 1   1 1  1       111    1 1232 2366778899


Q ss_pred             HhhcccCccchhhhc-cchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHh
Q 026897           90 VGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (231)
Q Consensus        90 ~gl~~~sa~~a~il~-~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll  147 (231)
                      +.+...+.+.+.-+. ++.=+++++.++++.+|.      .+++.++|+.+.+.|+.++
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~------~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEV------ISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcc------cchhHHHHHHHHHcCeeee
Confidence            999999999999886 678888888887777776      4456789999999998764

Many members are annotated as potential transmembrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.12  E-value=0.019  Score=49.41  Aligned_cols=128  Identities=9%  Similarity=-0.026  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026897           11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQTCLY   89 (231)
Q Consensus        11 l~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (231)
                      +.-++.|+.++.+=|..   ++|+.+=...-...-... -+.+..+...... ..+.+...+..+...|...+++-.+|.
T Consensus       154 l~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~-al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~  229 (293)
T COG2962         154 LALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPV-ALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFA  229 (293)
T ss_pred             HHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHH-HHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHH
Confidence            45567788877776753   377777777666655544 4433333222110 012345677788889999899999999


Q ss_pred             HhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        90 ~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      .|-+.++-+.-+++.+.+|....+++.++++|+      ++..|..+-+..-.|.++..
T Consensus       230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~------~~~~~~~~F~~IW~aL~l~~  282 (293)
T COG2962         230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEP------FDSDQLVTFAFIWLALALFS  282 (293)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999      55677787777777776654

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=97.01  E-value=0.0039  Score=54.00  Aligned_cols=144  Identities=17%  Similarity=0.167  Sum_probs=90.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHH
Q 026897           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSI-ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF  110 (231)
Q Consensus        34 p~~l~~~R~~~a~i~~l~~~~~~~~~~~~--~~~~~~~~-~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~  110 (231)
                      |+.++......=.++ -.......+++..  +...+|++ ++++.-.|+.+++...+-+++++|++.+.-+..=+..++|
T Consensus        45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F  123 (349)
T KOG1443|consen   45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF  123 (349)
T ss_pred             chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence            667777666544444 2222211122221  12345543 3345566776677788999999999999999999999999


Q ss_pred             HHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHH
Q 026897          111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS  190 (231)
Q Consensus       111 ~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a  190 (231)
                      +.+++.++.-||.+|      .-..-+.+..+|+.+.+ ++..                   .-...|..++++++++-+
T Consensus       124 IllFs~if~lEk~~w------~L~l~v~lI~~Glflft-~KsT-------------------qf~i~Gf~lv~~aS~~sG  177 (349)
T KOG1443|consen  124 ILLFSLIFKLEKFRW------ALVLIVLLIAVGLFLFT-YKST-------------------QFNIEGFFLVLAASLLSG  177 (349)
T ss_pred             HHHHHHHHHhHHHHH------HHHHHHHHHhhheeEEE-eccc-------------------ceeehhHHHHHHHHHhhh
Confidence            999999999999544      22333344444544443 2221                   134678888888888777


Q ss_pred             HHHHHHhhhhcCCC
Q 026897          191 LLYIVQVTFDKTPK  204 (231)
Q Consensus       191 ~~~v~~k~~~~~~~  204 (231)
                      +--...+.+.++.|
T Consensus       178 lRW~~tQ~ll~~~~  191 (349)
T KOG1443|consen  178 LRWAFTQMLLRNQP  191 (349)
T ss_pred             hhHHHHHHHHhcCc
Confidence            66666666665554

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.11  Score=45.41  Aligned_cols=164  Identities=12%  Similarity=0.031  Sum_probs=109.5

Q ss_pred             HHHHHHHHH----HHHHHHHHhc-CCChHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 026897           12 AVECLEVGS----STLNKAAMNK-GTSDFVLI-VYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (231)
Q Consensus        12 ~~~~lwg~~----~~~~K~~~~~-g~~p~~l~-~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (231)
                      .+++.|+.+    .+..|.++.. +.+..... .++.+...+. +...-.  -|-.+-++.+++..+..+-..++-.+..
T Consensus        15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~--~~lv~~~~l~~~~~kk~~P~~~lf~~~i   91 (314)
T KOG1444|consen   15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKR--LGLVNFRPLDLRTAKKWFPVSLLFVGML   91 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH--hceeecCCcChHHHHHHccHHHHHHHHH
Confidence            344444443    4456666653 34443333 3677666555 433211  1211114456666666666666555555


Q ss_pred             HHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCccc
Q 026897           86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (231)
Q Consensus        86 ~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~  165 (231)
                      ..-..+++|.+...-.++=+..|+++++...++++.|      +++.-+..+....+|.......+.             
T Consensus        92 ~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~------~~~~v~~Sv~~m~~~s~~~~~~d~-------------  152 (314)
T KOG1444|consen   92 FTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKR------PSNKVWASVFAMIIGSVAAAFTDL-------------  152 (314)
T ss_pred             HHccccccccCchHHHHHhhchHHHHHHhHHhhcCcC------chhhHHHHHHHHHHHHHhhccccc-------------
Confidence            5566889999999999999999999999999999977      666677888888888876542221             


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 026897          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPK  204 (231)
Q Consensus       166 ~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~  204 (231)
                             .....|..+.+..+++-+.+.+..|+..+.-+
T Consensus       153 -------sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~  184 (314)
T KOG1444|consen  153 -------SFNLRGYSWALANCLTTAAFVVYVKKSVDSAN  184 (314)
T ss_pred             -------eecchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence                   11234889999999999999999998765443

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.84  E-value=0.005  Score=46.51  Aligned_cols=66  Identities=17%  Similarity=0.135  Sum_probs=55.2

Q ss_pred             HHHH-HHHHHHHHHhhcccCccchhhhc-cchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           78 GLIS-CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        78 g~~~-~~~~~~~~~gl~~~sa~~a~il~-~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      .+.. .++++++..++++.+.+.|=.+. .+.-+.+.++++++++|+      .+..|++|+.+.++|++.+..
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~------~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDES------LSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHhhc
Confidence            4444 78888999999999998886664 678888999999999999      556789999999999988764

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.77  E-value=0.0077  Score=44.81  Aligned_cols=66  Identities=23%  Similarity=0.271  Sum_probs=52.3

Q ss_pred             HHHH-HHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        78 g~~~-~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      .+.+ .+.++++..++++.|.+.|=.+ ..+.-+.+.++++++++|+      .+..|++|+.+.++|++.+..
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~------~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhc
Confidence            3444 6777777888888888777555 4567777889999999999      556789999999999998763

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.011  Score=49.55  Aligned_cols=149  Identities=11%  Similarity=0.056  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHHH
Q 026897           34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI  113 (231)
Q Consensus        34 p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l  113 (231)
                      ...+++++...-.++ .=.+..++++.+. ++.+.   +....++.-..+++.--+.++++.+=....+=-++-|+=+++
T Consensus        53 alaLVf~qC~~N~vf-Akvl~~ir~~~~~-D~t~~---~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi  127 (337)
T KOG1580|consen   53 ALALVFFQCTANTVF-AKVLFLIRKKTEI-DNTPT---KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI  127 (337)
T ss_pred             HHHHHHHHHHHHHHH-HHhheeecccccc-cCCcc---hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence            345666666666555 3333223222211 22111   222223332256666678999999888888888899999999


Q ss_pred             HHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 026897          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY  193 (231)
Q Consensus       114 ~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~  193 (231)
                      ++.++.+++      +.++|...+++.++|+.+.. ++..-..            +.+......|.++.+++--.=++..
T Consensus       128 lGVl~~~Ks------Y~w~kY~cVL~IV~GValFm-YK~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg  188 (337)
T KOG1580|consen  128 LGVLFAHKS------YHWRKYCCVLMIVVGVALFM-YKENKVG------------GAEDKTFGFGELLLILSLAMDGLTG  188 (337)
T ss_pred             eehhhhccc------ccHHHHHHHHHHHHHHHHhh-ccccccC------------CCcccccchHHHHHHHHHHhcccch
Confidence            999999999      67788999999999998765 4321110            2234456789999999888888889


Q ss_pred             HHHhhhhcCCCCC
Q 026897          194 IVQVTFDKTPKIP  206 (231)
Q Consensus       194 v~~k~~~~~~~~~  206 (231)
                      ..|++..+++.+.
T Consensus       189 ~~Qdrira~yq~~  201 (337)
T KOG1580|consen  189 SIQDRIRASYQRT  201 (337)
T ss_pred             hHHHHHHHhhccC
Confidence            9999988887654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.68  E-value=0.007  Score=53.18  Aligned_cols=138  Identities=14%  Similarity=0.176  Sum_probs=102.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHH-HHHHHHhhcCC---CC-CCCHHHHHHH
Q 026897            3 SVGVTAVMVAVECLEVGSSTLNKAAMN---KGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNRT---RP-PLTVSIICKI   74 (231)
Q Consensus         3 ~~~~~~~ll~~~~lwg~~~~~~K~~~~---~g~~p~~l~~~R~~~a~i~~l~-~~~~~~~~~~~---~~-~~~~~~~~~~   74 (231)
                      +..+.++..++.+..+...++.|..+.   +.+|++.+..+..-++.++ ++ |+....++...   .. ..+...+. .
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTFLI-L  238 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhhHH-H
Confidence            456788899999999999999999883   3599999999999999999 88 87665333221   11 22333222 2


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           75 FGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        75 ~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      ....++....+...+.-+..+||-.=++....==.+++..++++++|+      .+..+.+|..+++.|+.+=.
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~p------vt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNP------VTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCC------CchhhHHHHHHHHHHHHHHH
Confidence            333354566677888999999998777776665566677788999998      55678999999999998644

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.64  E-value=0.035  Score=41.17  Aligned_cols=60  Identities=15%  Similarity=0.094  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHh
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll  147 (231)
                      .+.+++...++|++|.+.+=.+ ....-+.+.+.++++++|+      .+..|++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~------~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQR------LNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHHHh
Confidence            6778888899999988877544 4577778888999999999      5667899999999999875

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.64  E-value=0.041  Score=42.56  Aligned_cols=131  Identities=15%  Similarity=0.088  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 026897            8 AVMVAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (231)
Q Consensus         8 ~~ll~~~~lwg~~~~~~K~~~~~g~~-p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (231)
                      +..+.+..+-+....+.-..-+. .+ |..-++.-+..+.+. +..+....+++.. ++.+... ++...-|++|...-.
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~~~p-~w~~lGG~lG~~~V~   79 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFIL-LLIILLITGRPSL-ASLSSVP-WWAYLGGLLGVFFVL   79 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhccCC-hHHhccHHHHHHHHH
Confidence            44556666666666665555444 54 999999999999999 7776655443221 1111111 233446677777778


Q ss_pred             HHHHhhcccCccchhhhcc-chhHHHHHHHHH--HhhhccchhhhccchhhHHHHHHHHhHhH
Q 026897           87 CLYVGIGYSSPTLSSAIVD-LTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (231)
Q Consensus        87 ~~~~gl~~~sa~~a~il~~-l~P~~~~l~a~l--~~~E~~~~~~~~~~~~~~g~~l~~~Gi~l  146 (231)
                      +..+.+...+++.+..+.- -+-+...++.++  +..||.+    .+..|++|+.+.++|+++
T Consensus        80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~----~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRP----FSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCC----CCHHHHHHHHHHHHHHhC
Confidence            8889999999988877653 333444444442  2223322    778899999999999863

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.60  E-value=0.009  Score=43.96  Aligned_cols=64  Identities=14%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             HHH-HHHHHHHHHhhcccCccchh-hhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           79 LIS-CCVQTCLYVGIGYSSPTLSS-AIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        79 ~~~-~~~~~~~~~gl~~~sa~~a~-il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      +.+ .+++.+.-.++|+++.+.|= +-...--+.+.+.++++++|+      .+..|++|+.+.++|++.+.
T Consensus        37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~------l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGES------LSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCc------CCHHHHHHHHHHHHHHHHhh
Confidence            344 78888889999999988774 445677888899999999999      55678999999999998765

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.47  E-value=0.0018  Score=55.17  Aligned_cols=132  Identities=10%  Similarity=0.076  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 026897            8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC   87 (231)
Q Consensus         8 ~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (231)
                      ...+.+.+.-+..+++.|..-++ .|......+=.+++.+. -+..+.......  -...++++..+..+|++|.++|++
T Consensus       194 ~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~-s~I~~~~ig~~~--lP~cgkdr~l~~~lGvfgfigQIl  269 (346)
T KOG4510|consen  194 VAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVV-SLIGCASIGAVQ--LPHCGKDRWLFVNLGVFGFIGQIL  269 (346)
T ss_pred             HHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHH-HHHHHhhcccee--cCccccceEEEEEehhhhhHHHHH
Confidence            44445555555566666655343 77777677666676666 444332222222  234567778888899999999999


Q ss_pred             HHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        88 ~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      ...|+|.-.|+..+++.++.-+++.++-.++++|.      ++...|.|.++.+...+++..
T Consensus       270 lTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~------Pt~ws~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  270 LTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHW------PTIWSWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             HHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCC------ChHHHhhceeeeehhHHHHHH
Confidence            99999999999999999999999999999999999      555667888877777766653

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.45  E-value=0.036  Score=49.41  Aligned_cols=140  Identities=14%  Similarity=0.109  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CCCCHHHHHHHHHH
Q 026897            3 SVGVTAVMVAVECLEVGSSTLNKAAMNK---GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-R-PPLTVSIICKIFGL   77 (231)
Q Consensus         3 ~~~~~~~ll~~~~lwg~~~~~~K~~~~~---g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~   77 (231)
                      ...+.++.+.++++||.+.++.|.-.++   .+|-..+-.+-.++..++ +.|.+........ + .-.+..+...++..
T Consensus       245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            4567888999999999999999986642   377777777777888888 8875544322211 0 11223344556778


Q ss_pred             HHHH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           78 GLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        78 g~~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      ++++ .+.-++|..|.-.|++-.+++=+++.-..+++.-.++.+.+      ++...++|....++|-++++.
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~------~S~~~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKH------PSALYIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCC------CCHHHHHHHHHHHHHHhheec
Confidence            8888 99999999999999998888766655555566666665555      788899999999999988764

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.38  E-value=0.019  Score=42.31  Aligned_cols=64  Identities=13%  Similarity=0.089  Sum_probs=52.8

Q ss_pred             HHH-HHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           79 LIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        79 ~~~-~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      +.+ ..++++...+++++|.+.+=.+ ..+--+.+.++++++++|+      .+..|++|+.+.+.|++.+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~------~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGES------ASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHhhh
Confidence            444 7888888999999998877544 4577888899999999999      55678999999999998764

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.35  E-value=0.18  Score=43.85  Aligned_cols=159  Identities=14%  Similarity=0.103  Sum_probs=101.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHH
Q 026897           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTF  112 (231)
Q Consensus        33 ~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~  112 (231)
                      +|..+++.+-+.+.++ -...+  +.++..  ...++.|......++.+.+...+.+.+++|.+=-.-.+==.+=-+-++
T Consensus        50 ~~~fL~~~q~l~~~~~-s~~~l--~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLV-SYAML--KWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM  124 (327)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHH--hccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence            6778888888787777 43332  223222  222344566677788778889999999999974333332232223345


Q ss_pred             HHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHH
Q 026897          113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL  192 (231)
Q Consensus       113 l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~  192 (231)
                      +++.++.+.|      ++..+.+..++.-.|+.+-...+... ++.          .....+..+|..+....-+.=+..
T Consensus       125 lmg~Lvy~~k------y~~~eYl~~~LIs~GvsiF~l~~~s~-s~~----------~~g~~ns~~G~~Ll~~~L~fDgfT  187 (327)
T KOG1581|consen  125 LMGTLVYGRK------YSSFEYLVAFLISLGVSIFSLFPNSD-SSS----------KSGRENSPIGILLLFGYLLFDGFT  187 (327)
T ss_pred             HHHHHHhcCc------cCcHHHHHHHHHHhheeeEEEecCCC-Ccc----------ccCCCCchHhHHHHHHHHHHHhhH
Confidence            7899999999      55666777777778886654332211 110          112235678988888888888888


Q ss_pred             HHHHhhhhcCCCCCchhHHHH
Q 026897          193 YIVQVTFDKTPKIPTYSLIDF  213 (231)
Q Consensus       193 ~v~~k~~~~~~~~~~~~~~~~  213 (231)
                      +..|+++.+++......++.+
T Consensus       188 n~tQd~lf~~~k~s~~~mM~~  208 (327)
T KOG1581|consen  188 NATQDSLFKKYKVSSLHMMFG  208 (327)
T ss_pred             HhHHHHHhccCCccHhHHHHH
Confidence            999999999877654444433

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.12  E-value=0.015  Score=41.73  Aligned_cols=56  Identities=14%  Similarity=0.081  Sum_probs=33.3

Q ss_pred             HHHH-HHHHHHHHHhhcccCccch-hhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHH
Q 026897           78 GLIS-CCVQTCLYVGIGYSSPTLS-SAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV  139 (231)
Q Consensus        78 g~~~-~~~~~~~~~gl~~~sa~~a-~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l  139 (231)
                      .+.+ ..+++++..++++.+.+.+ ++...+..+.+.+.+.++++|++      +..|++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~------s~~~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESL------SLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCC------CHHHHhheee
Confidence            3445 7888999999999999988 45567999999999999999994      5566777765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=0.043  Score=47.07  Aligned_cols=159  Identities=13%  Similarity=0.020  Sum_probs=90.4

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---C--CCCHH---HHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhc
Q 026897           33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTR---P--PLTVS---IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIV  104 (231)
Q Consensus        33 ~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~---~--~~~~~---~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~  104 (231)
                      .|..+++++.+....+ .+.+.....+...+   +  +.|.+   +.+.+...-+.+   ..+-++-++|.+.+---+=-
T Consensus        60 ~plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~m---I~fnnlcL~yVgVaFYyvgR  135 (347)
T KOG1442|consen   60 APLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILM---ISFNNLCLKYVGVAFYYVGR  135 (347)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeee---hhccceehhhcceEEEEecc
Confidence            3778888888877666 55543322221110   1  12222   222222221111   12234566666666555555


Q ss_pred             cchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCcccccCCCCCCchhHHHHHHHH
Q 026897          105 DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAA  184 (231)
Q Consensus       105 ~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~L~  184 (231)
                      .+.-+|+.++.++++|||      -+..-..++.+.+.|-.+-+  +..               ...+.-...|.++...
T Consensus       136 sLttvFtVlLtyvllkqk------Ts~~~~~~C~lIi~GF~lGv--dqE---------------~~~~~ls~~GvifGVl  192 (347)
T KOG1442|consen  136 SLTTVFTVLLTYVLLKQK------TSFFALGCCLLIILGFGLGV--DQE---------------GSTGTLSWIGVIFGVL  192 (347)
T ss_pred             chhhhHHHHhHHhhcccc------cccccceeehhheehheecc--ccc---------------cccCccchhhhHHHHH
Confidence            678889999999999999      44444566666666654322  110               1223445789999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHhhh
Q 026897          185 GSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLP  219 (231)
Q Consensus       185 aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~  219 (231)
                      |+++-|+..+..||........ .-..++++...+
T Consensus       193 aSl~vAlnaiytkk~l~~v~~~-iw~lt~ynnv~a  226 (347)
T KOG1442|consen  193 ASLAVALNAIYTKKVLPPVGDC-IWRLTAYNNVNA  226 (347)
T ss_pred             HHHHHHHHHHhhheecccccCe-ehhhHHHHHHHH
Confidence            9999999999998665444332 223444444333

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.72  E-value=0.27  Score=38.55  Aligned_cols=142  Identities=14%  Similarity=0.030  Sum_probs=77.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 026897            1 MWSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI   80 (231)
Q Consensus         1 ~~~~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   80 (231)
                      |.+....+..+.+..+-.....+.-...+..=+|+.-.+..+..+.++ +..+....++... ....++.-.+...-|++
T Consensus         1 ~~~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~-L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~l   78 (150)
T COG3238           1 MMMYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVL-LLILLLIKQGHPG-LAAVASAPWWAWIGGLL   78 (150)
T ss_pred             CccHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHhcCCCc-hhhccCCchHHHHccch
Confidence            344555666677777777766666655554235999999999998888 7777665333221 11111222233344555


Q ss_pred             HHHHHHHHHHhhcccCccchhhhc-cchhHHHHHHHHH-HhhhccchhhhccchhhHHHHHHHHhHhHh
Q 026897           81 SCCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (231)
Q Consensus        81 ~~~~~~~~~~gl~~~sa~~a~il~-~l~P~~~~l~a~l-~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll  147 (231)
                      |+.+-..-........++....+. .-.-+..+++..+ +++++  .| .++..+++|+++.++|++++
T Consensus        79 Ga~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~--~~-~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          79 GAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVP--KR-PLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC--cC-CCCHHHHHHHHHHHHHHHHh
Confidence            544333334444555554444332 2233333333221 12222  12 27889999999999995543

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=95.43  E-value=0.14  Score=44.09  Aligned_cols=158  Identities=16%  Similarity=0.075  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCccchhhhccchhHHHHH
Q 026897           35 FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGY-SSPTLSSAIVDLTPAFTFI  113 (231)
Q Consensus        35 ~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~-~sa~~a~il~~l~P~~~~l  113 (231)
                      ..+++.++++-+.- -++..  .+-...+++.+.|++....  +.+ ...+.+-++++++ ++...=-++-.-.++-.++
T Consensus        34 NLITFaqFlFia~e-Glif~--skf~~~k~kiplk~Y~i~V--~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~  107 (330)
T KOG1583|consen   34 NLITFAQFLFIATE-GLIFT--SKFFTVKPKIPLKDYAITV--AMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI  107 (330)
T ss_pred             eehHHHHHHHHHHh-ceeee--ccccccCCCCchhhhheeh--hee-eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence            56677777665544 33321  1111111445555543322  211 3455566778876 4556666677889999999


Q ss_pred             HHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCcccc-CCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHH
Q 026897          114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS-MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLL  192 (231)
Q Consensus       114 ~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~  192 (231)
                      +++++.+.|      ++.+|+..+++.-+|+++.+....+.... .++++  ++++......|.+|..+...|-+.-|..
T Consensus       108 ~g~il~~k~------Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~--~~~~~~~~~~w~iGi~lL~~al~~sa~m  179 (330)
T KOG1583|consen  108 LGWILLGKR------YSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLD--SGSAQSDFFWWLIGIALLVFALLLSAYM  179 (330)
T ss_pred             HHHHhccce------eehhhhhhHHhhhhhheeEEeecCcchhhhhcccc--cCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999      88999999999999999887554332211 00000  1112223345779999998999988888


Q ss_pred             HHHHhhhhcCCCCC
Q 026897          193 YIVQVTFDKTPKIP  206 (231)
Q Consensus       193 ~v~~k~~~~~~~~~  206 (231)
                      .+.|...-+++.-+
T Consensus       180 giyqE~~Y~kyGKh  193 (330)
T KOG1583|consen  180 GIYQETTYQKYGKH  193 (330)
T ss_pred             HHHHHHHHHHhcCC
Confidence            88888876666433

>TIGR00803 nst UDP-galactose transporter

Probab=95.02  E-value=0.11  Score=43.01  Aligned_cols=61  Identities=15%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHh
Q 026897           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL  145 (231)
Q Consensus        79 ~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~  145 (231)
                      +.++..+.+..+-+++.++..-+....+.++++.+++.++++|+      ++..+++|..+.+.|+.
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~------ls~~~~~g~~lV~~~~~  220 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAK------ISSTFYLGAILVFLATF  220 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHeeeE
Confidence            33467777888999999999999999999999999999999999      66778899999988864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.01  E-value=0.029  Score=49.10  Aligned_cols=70  Identities=21%  Similarity=0.385  Sum_probs=59.5

Q ss_pred             HHHHHHHH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           74 IFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        74 ~~~~g~~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      .++.|+.. .++..+.+.++.+.|++..+-+..+.=++..+++..+++||+      ++..+.|+.+++.|..++..
T Consensus        52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~------~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKL------TRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccc------hHhHHhhHHHHHhhheeeEE
Confidence            34566655 777788899999999999999999999999999999999995      45668999999999987663

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.62  E-value=0.0048  Score=51.94  Aligned_cols=130  Identities=15%  Similarity=0.080  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 026897            8 AVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC   87 (231)
Q Consensus         8 ~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   87 (231)
                      ..++.+.+-|-.+.+..+...-+|.+.+.--+.-+.++++. +   - +++.  . ++.++.. ..-..-|++-+.++.+
T Consensus       155 ~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali-~---~-~~~~--~-~~~~K~t-~~nii~G~~Wa~GNl~  225 (288)
T COG4975         155 VILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI-L---G-FFKM--E-KRFNKYT-WLNIIPGLIWAIGNLF  225 (288)
T ss_pred             eeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH-H---h-hccc--c-cchHHHH-HHHHhhHHHHHhhHHH
Confidence            33334444444444444432223455554445555555544 2   1 1121  1 2223222 3345567777888899


Q ss_pred             HHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        88 ~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      ++++-+..+.+.+-.+..+.-+...+-+.++++||-+.||+  ..-+.|+++.++|++++.
T Consensus       226 ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg  284 (288)
T COG4975         226 MLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG  284 (288)
T ss_pred             HHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence            99999988888888888888888888999999999777765  445778888888877654

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.56  E-value=0.36  Score=42.01  Aligned_cols=137  Identities=11%  Similarity=0.037  Sum_probs=96.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C--CCCCHHHHHHHHHHHH
Q 026897            4 VGVTAVMVAVECLEVGSSTLNKAAM-NKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-R--PPLTVSIICKIFGLGL   79 (231)
Q Consensus         4 ~~~~~~ll~~~~lwg~~~~~~K~~~-~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~~~g~   79 (231)
                      ..+++.+..-.+.=|.....-+... +.++++.++.++-.++.++. -.......+.... .  -+..++-++-++....
T Consensus       171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~  249 (327)
T KOG1581|consen  171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTYLILQGHLLPAVSFIKEHPDVAFDILLYST  249 (327)
T ss_pred             hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence            3445544444443344443333333 34699999999999998888 6665332211111 0  1335566677888888


Q ss_pred             HHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHh
Q 026897           80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (231)
Q Consensus        80 ~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll  147 (231)
                      .++++|.+.++-++.-++-.-+.++.+==++.+.++.+.++.++      +..||+|+.+.+.|+.+=
T Consensus       250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~------s~~q~~g~~iVFg~i~l~  311 (327)
T KOG1581|consen  250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPL------SSEQWLGVLIVFGGIFLE  311 (327)
T ss_pred             hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCcc------chhhccCeeeehHHHHHH
Confidence            88999999999999988888888888888999999999999995      456789999999998753

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.39  E-value=0.12  Score=43.51  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhH
Q 026897           69 SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (231)
Q Consensus        69 ~~~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~l  146 (231)
                      ..+.-+...|+.++++|.+.+.-+.+-+|-.-++++.+--+|+++.+.++++.+      .+.+||+|..+.+.|...
T Consensus       239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~np------ls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNP------LSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCc------CcHHHHHHHHHHHHHhhh
Confidence            344556777888899999999999999999999999999999999999999999      456778999999988765

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=93.83  E-value=0.33  Score=41.43  Aligned_cols=186  Identities=12%  Similarity=0.043  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 026897            6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ   85 (231)
Q Consensus         6 ~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   85 (231)
                      ++++.+.+.+++|++++-.|.. +. -|++.+-++....-.+. -......  +..  ++..    +.-++-|.+-+.++
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~-g~~v~~~--~~~--p~f~----p~amlgG~lW~~gN   69 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLV-GLVVNLI--LGF--PPFY----PWAMLGGALWATGN   69 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHH-HHHHHHh--cCC--Ccce----eHHHhhhhhhhcCc
Confidence            3677889999999999999965 44 58877666655433333 2222222  211  2221    22334445556677


Q ss_pred             HHHHHhhcccCccchhhhccchhHHH-HHHHHH-HhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCC---
Q 026897           86 TCLYVGIGYSSPTLSSAIVDLTPAFT-FILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS---  160 (231)
Q Consensus        86 ~~~~~gl~~~sa~~a~il~~l~P~~~-~l~a~l-~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~---  160 (231)
                      .+-.-.++..+-+.+-.+.+..-+.+ ...+.+ +++++.+.-. ......+|++++++|..+..+.+.....+-++   
T Consensus        70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~  148 (254)
T PF07857_consen   70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEE  148 (254)
T ss_pred             eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCCCCccccccc
Confidence            77778888888888888876633333 333322 3332222111 34567999999999998766543322111000   


Q ss_pred             -----CCccc-------ccCCC------CCCchhHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 026897          161 -----SSNLH-------NELRS------PQKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTP  203 (231)
Q Consensus       161 -----~~~~~-------~~~~~------~~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~  203 (231)
                           ++..+       .++.+      .....+.|..+++.+.+.|+...+=.....+|.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  149 TPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             cccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence                 00000       00111      111467899999999999999998777766554

The region concerned is approximately 280 residues long.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.51  E-value=0.0065  Score=51.20  Aligned_cols=170  Identities=12%  Similarity=0.022  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 026897            7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT   86 (231)
Q Consensus         7 ~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   86 (231)
                      ++..++-++.||....+....   |=+|.+=+..--+-|.++ -+.+.++ .+    +..+.+.+..-++.|.+-..+|.
T Consensus         4 ~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~-~~----p~~T~~~~iv~~isG~~Ws~GQ~   74 (288)
T COG4975           4 LLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF-VS----PELTLTIFIVGFISGAFWSFGQA   74 (288)
T ss_pred             HHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee-ec----CccchhhHHHHHHhhhHhhhhhh
Confidence            456678889999977665432   334555444444444444 3333322 22    33455555555666666688899


Q ss_pred             HHHHhhcccCccchhhhcc-chhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccccCCCCCccc
Q 026897           87 CLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH  165 (231)
Q Consensus        87 ~~~~gl~~~sa~~a~il~~-l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~~~~~~~~~  165 (231)
                      .++.++++.+.++|.-+.+ ..=+-+-+++.+.++|.-+..+.  ..-.+++++.+.|+++-+..++.          ++
T Consensus        75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~~~~~----------nk  142 (288)
T COG4975          75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSKQDRN----------NK  142 (288)
T ss_pred             hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeeeeccc----------cc
Confidence            9999999999999987764 55566778889999998432211  01134555666666543322211          00


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 026897          166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQVTF  199 (231)
Q Consensus       166 ~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~k~~  199 (231)
                        +.++..+.-.|....+.+.+.|-.|.+..+..
T Consensus       143 --~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         143 --EEENPSNLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             --cccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence              11112233456666666666666666655443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.58  E-value=3.6  Score=36.08  Aligned_cols=137  Identities=14%  Similarity=0.106  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCC-CCCHHHHHHHHHHH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMN-KGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRP-PLTVSIICKIFGLG   78 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~-~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~----~~~-~~~~~~~~~~~~~g   78 (231)
                      .+|..+....+.-....+..|...+ .+.+.+.+.++-.+++... +....+..+..+    ..+ ..+...+-.+.+.+
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc  235 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLSC  235 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence            4677777777777777888887765 3577888999999888777 555543322211    001 11223445566666


Q ss_pred             HHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhh
Q 026897           79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT  148 (231)
Q Consensus        79 ~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~  148 (231)
                      +++.+-.++-++-.+.+|+...++.-...=..+.+...++++++      .++...+|+.+++.|-++=.
T Consensus       236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~------~~~~n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKP------FTFLNVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCce------echhhhHHHHHHhhhhhHHh
Confidence            77755666777888888888888877666666666666777777      56678999999999987643

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.29  E-value=0.15  Score=44.63  Aligned_cols=71  Identities=18%  Similarity=0.357  Sum_probs=58.5

Q ss_pred             HHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        73 ~~~~~g~~~-~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      ..++.|++. .++...-|-+..+.|++..+-+-+++-+..++++..++|||+++      .-.+|+.++++|-.+++.
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~------~g~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNL------LGILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHH------hhhhheeEEecccEEEEE
Confidence            345667666 67777777888888999989999999999999999999999765      447999999999988773

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=87.10  E-value=11  Score=31.94  Aligned_cols=120  Identities=7%  Similarity=-0.045  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-
Q 026897            4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSN-AFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-   81 (231)
Q Consensus         4 ~~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~-~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-   81 (231)
                      ..+.+.++.+.++-|.+.+.....++++-.|+..--.+. ..+.++ .++......+.+....--.+.+-...+.-++. 
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~-~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~  191 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF-NLLALLLSDGSAISESGFFHGYSWWVWIVIFLQ  191 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHhcccccccccCCchhhcchHHHHHHHHH
Confidence            346777888899999999999777765334444444443 344444 43333222221110110111111222223333 


Q ss_pred             HHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccc
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLD  124 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~  124 (231)
                      +.+-++...-+||.+.-.=..-....-+.+.++++.+++++++
T Consensus       192 a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s  234 (244)
T PF04142_consen  192 AIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPS  234 (244)
T ss_pred             HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            5555566667788877666667777888899999999999943

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=86.50  E-value=13  Score=33.04  Aligned_cols=179  Identities=11%  Similarity=0.029  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhh-cCC---CCCCCHHHHHHHHHHHHH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYR-NRT---RPPLTVSIICKIFGLGLI   80 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g~~p~~l~~~R~~~a~i~~l~~~~~~~~~-~~~---~~~~~~~~~~~~~~~g~~   80 (231)
                      .+.+...++.++=|..++-.|...+-.....+++  ..+++-++  .|....... ++.   ....+...+...++.|++
T Consensus         7 ~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv--~gi~swli--~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l   82 (344)
T PF06379_consen    7 LGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLV--QGIFSWLI--VPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL   82 (344)
T ss_pred             HHHHHHHHHHHHhhhhccchhhcCCccHHHHHHH--HHHHHHHH--HHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence            3556677888888888888887655434445544  44555444  554332111 100   012233455555667776


Q ss_pred             HHHHHHHHHHhhcccCccchhh-hccchhHHHHHHHHHHhhh--ccchhhhccchhhHHHHHHHHhHhHhhhccCCcccc
Q 026897           81 SCCVQTCLYVGIGYSSPTLSSA-IVDLTPAFTFILALISRME--KLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS  157 (231)
Q Consensus        81 ~~~~~~~~~~gl~~~sa~~a~i-l~~l~P~~~~l~a~l~~~E--~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~~  157 (231)
                      -.+....|-.+++|+..+...- ...+.-++-.++-.++.++  .+...+ -.+.-++|++++++|+.++...+..    
T Consensus        83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~-~g~~vL~Gv~v~LiGIai~g~AG~~----  157 (344)
T PF06379_consen   83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATP-SGQIVLLGVAVCLIGIAICGKAGSM----  157 (344)
T ss_pred             HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCC-CchhhhhHHHHHHHHHHHHhHHHHh----
Confidence            6777788889999998775543 3344444444444444221  111111 2456789999999999987632110    


Q ss_pred             CCCCCcccccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 026897          158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQ  196 (231)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~G~~l~L~aa~~~a~~~v~~  196 (231)
                          ++.+.+++.++.+.-.|.+.++.|.+.-|++++-.
T Consensus       158 ----Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~  192 (344)
T PF06379_consen  158 ----KEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGL  192 (344)
T ss_pred             ----hhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence                01110111223355689999999998888888753

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=86.32  E-value=9.5  Score=28.14  Aligned_cols=111  Identities=19%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 026897            8 AVMVAVECLEVGSSTLNKAAMNKGTSD------FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS   81 (231)
Q Consensus         8 ~~ll~~~~lwg~~~~~~K~~~~~g~~p------~~l~~~R~~~a~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (231)
                      ..++.+.++||...++.|.+... .+.      -...+.|-....                  ..+++.+..    -+++
T Consensus         6 ~~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~lqe~~tl------------------~l~w~Y~iP----FllN   62 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIALQEMKTL------------------FLNWEYLIP----FLLN   62 (125)
T ss_pred             HHHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHHHHHHHHH------------------HHhHHHHHH----HHHH
Confidence            45789999999999999987542 322      222223322211                  111222111    1233


Q ss_pred             HHHHHHHHHhhcccCccchhhhcc-chhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHh
Q 026897           82 CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV  147 (231)
Q Consensus        82 ~~~~~~~~~gl~~~sa~~a~il~~-l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll  147 (231)
                      -.+..+|+.-++.++-+.|.-+.+ +.=.|+++.+..+..|.      ..++.++|..+.+.|+.++
T Consensus        63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~------~g~~a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEET------QGGLALLGTSLIVFGIWLC  123 (125)
T ss_pred             HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhcccc------ccceeehhhhHHhhhhhhe
Confidence            455677888999999888886654 66677888787765555      5677899999999998765

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=84.54  E-value=28  Score=30.72  Aligned_cols=135  Identities=17%  Similarity=0.144  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------CCCCH----HH
Q 026897            5 GVTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PPLTV----SI   70 (231)
Q Consensus         5 ~~~~~ll~~~~lwg~~~~~~K~~~~~g----~~p~~l~~~R~~~a~i~~l~~~~~~~~~~~~~------~~~~~----~~   70 (231)
                      .+......+.++-|.-+.+++..+++.    =+|++....-.-...+. ++|.....++....      ...+.    +.
T Consensus       164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            356667788888888888888877641    35777666666566666 66655443332210      01111    12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhH
Q 026897           71 ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT  146 (231)
Q Consensus        71 ~~~~~~~g~~~~~~~~~~~~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~l  146 (231)
                      ...+...|.+..+--...+.=+..|+.-..++.--.-=+.+.++|..+.+|+++      -..|.|..++..|+..
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls------~lN~~Gl~i~~agi~~  312 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLS------LLNWLGLAICLAGILL  312 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchh------hhHHHHHHHHHHHHHH
Confidence            222222222221111233444556665555555555667788899999999954      4678999999999975

>TIGR00803 nst UDP-galactose transporter

Probab=82.34  E-value=6.7  Score=32.21  Aligned_cols=100  Identities=9%  Similarity=-0.019  Sum_probs=60.5

Q ss_pred             chhhhccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhccCCccc-----cC-CCCCccccc-CCCC
Q 026897           99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALV-----SM-SSSSNLHNE-LRSP  171 (231)
Q Consensus        99 ~a~il~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~~~~~~~-----~~-~~~~~~~~~-~~~~  171 (231)
                      .....-+..|+++++.++...+||      +.+.|++++++...|++.-...+.+...     .+ ......+.. ....
T Consensus         6 a~~~~~s~~l~~v~l~~~~~~~~~------~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~   79 (222)
T TIGR00803         6 IHIIFKQNNLVLIALGNLLAAGKQ------VTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLM   79 (222)
T ss_pred             chHHHHhcchHHHHHhccccccee------eehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccc
Confidence            344556788888888888888888      5567888888888888743322111000     00 000000000 0011


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 026897          172 QKNWIIGGLVLAAGSFFLSLLYIVQVTFDKTPK  204 (231)
Q Consensus       172 ~~~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~  204 (231)
                      .++...|....+.++++-+.-.+.+++..|+.+
T Consensus        80 ~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~  112 (222)
T TIGR00803        80 FGNPVVGLSAVLSALLSSGFAGVYFEKILKDGD  112 (222)
T ss_pred             cccHHHHHHHHHHHHHHHhhhHHHHHHcccCCC
Confidence            234567888888888888888888888776654

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.48
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.42

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.48  E-value=2.2e-07  Score=70.81  Aligned_cols=69  Identities=22%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhc
Q 026897           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY  150 (231)
Q Consensus        76 ~~g~~~-~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~  150 (231)
                      ..+++. .+++++++.++++.+++.+..+ .++.|++++++++++++|+      ++..|++|+.+.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~------ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhcC
Confidence            566666 8999999999999999999888 8999999999999999999      5667899999999999988753

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.42  E-value=7.5e-07  Score=65.30  Aligned_cols=68  Identities=22%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897           76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL  149 (231)
Q Consensus        76 ~~g~~~-~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~  149 (231)
                      ..++++ .+++.++..++++.+.+.+..+ ..+.|+++.++++++++|+      +++.|++|+.+.+.|++.+..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~------~s~~~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhc
Confidence            456666 8889999999999999999888 7999999999999999999      566789999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00