Citrus Sinensis ID: 026913

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL
ccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHccccccEEEcccEEEEcccccccccEEEEEEEcccccEEEccccccccccccEEEEEEEcccccEEEEEEEccccccccccccEEEccccccccEEEEEccEEEEcEEEEEEccccccccccccHHHHHHHHHHHHHHccHHccccccccccccc
ccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHcccEEEEEEcccEEEEccccccccEEEEEEEEccccEEEEcccccccccccccEEEEEEccccccEEEEEEcccccccccccEEEEEccccccEEEEEccccHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccc
MRSGVPNFCAVALALNdlgykavgirldsgdlaylSCEARKFFRTIekefgvpdfekmSITASNDLNEETLDALNKqghevdafgIGTYLVTCYAQAALGCVFKLVeinkqpriklsedvskvsipckkrsyrlygkegyplvdimtgenepppkvgerilcrhpfneskrayvvPQKVEELLKcywpgssdkrredlptlKDTRERCIKQLEQMrpdhmrrlnptpykvl
MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEkefgvpdfEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKqpriklsedvskvsipckkrsyrlygkegypLVDIMTGENEPPPKVGERILCrhpfneskrayvvpqkvEELLkcywpgssdkrredlptlkdTRERCIKQleqmrpdhmrrlnptpykvl
MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL
*****PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITA*******TLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTG*******VGERILCRHPFNESKRAYVVPQKVEELLKCYWP*******************************************
MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL
MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL
*RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query231 2.2.26 [Sep-21-2011]
Q9VQX4555 Nicotinate phosphoribosyl no no 0.982 0.409 0.611 2e-80
Q55G10589 Nicotinate phosphoribosyl yes no 0.987 0.387 0.548 1e-71
Q95XX1562 Nicotinate phosphoribosyl yes no 0.978 0.402 0.538 5e-66
Q6XQN6538 Nicotinate phosphoribosyl yes no 0.978 0.420 0.432 3e-46
Q6XQN1538 Nicotinate phosphoribosyl yes no 0.974 0.418 0.430 3e-44
Q8CC86538 Nicotinate phosphoribosyl yes no 0.978 0.420 0.427 5e-44
A5PK51538 Nicotinate phosphoribosyl yes no 0.978 0.420 0.432 3e-43
Q6P3H4546 Nicotinate phosphoribosyl yes no 0.978 0.413 0.397 9e-42
O32090490 Nicotinate phosphoribosyl yes no 0.571 0.269 0.423 4e-21
O53770463 Nicotinate phosphoribosyl yes no 0.722 0.360 0.289 2e-07
>sp|Q9VQX4|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2 Back     alignment and function desciption
 Score =  298 bits (763), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 140/229 (61%), Positives = 176/229 (76%), Gaps = 2/229 (0%)

Query: 2   RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSIT 61
           RSG+ NF AVALALNDLGY A+GIR+DSGDLAYLSC AR+ F  + + F VP F K++I 
Sbjct: 305 RSGLLNFSAVALALNDLGYHALGIRIDSGDLAYLSCLARETFEKVAERFKVPWFNKLTIV 364

Query: 62  ASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVS 121
           ASND+NE+T+ +LN+QGH++D FGIGT+LVTC  Q ALGCV+KLVEIN QPRIKLS+DV 
Sbjct: 365 ASNDINEDTILSLNEQGHKIDCFGIGTHLVTCQRQPALGCVYKLVEINGQPRIKLSQDVE 424

Query: 122 KVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEE 181
           KV++P  K +YRLY  +G+ L+D++   +EPPP VG+++LCRHPF ESKRAYV+P  VE 
Sbjct: 425 KVTMPGNKNAYRLYSADGHALIDLLQKVSEPPPAVGQKVLCRHPFQESKRAYVIPSHVES 484

Query: 182 LLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
           L K YW   S K  + LPTL+  RE+    L+ +R DH R LNPTPYKV
Sbjct: 485 LYKVYW--KSGKICQQLPTLEQVREKVQISLKTLRNDHKRTLNPTPYKV 531
Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 1
>sp|Q55G10|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum GN=naprt PE=2 SV=1 Back     alignment and function description
>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=3 Back     alignment and function description
>sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2 Back     alignment and function description
>sp|Q6XQN1|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1 PE=2 SV=1 Back     alignment and function description
>sp|Q8CC86|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2 SV=1 Back     alignment and function description
>sp|A5PK51|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2 SV=2 Back     alignment and function description
>sp|Q6P3H4|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2 SV=2 Back     alignment and function description
>sp|O32090|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain 168) GN=pncB PE=3 SV=1 Back     alignment and function description
>sp|O53770|PNCB2_MYCTU Nicotinate phosphoribosyltransferase pncB2 OS=Mycobacterium tuberculosis GN=pncB2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query231
224081698 559 predicted protein [Populus trichocarpa] 0.995 0.411 0.939 1e-125
224094304 559 predicted protein [Populus trichocarpa] 0.995 0.411 0.921 1e-124
255565240 561 nicotinate phosphoribosyltransferase, pu 0.995 0.409 0.917 1e-121
356511877 557 PREDICTED: nicotinate phosphoribosyltran 0.995 0.412 0.886 1e-120
225438748 561 PREDICTED: nicotinate phosphoribosyltran 0.995 0.409 0.891 1e-118
296082406 524 unnamed protein product [Vitis vinifera] 0.995 0.438 0.891 1e-118
343172724 559 nicotinate phosphoribosyltransferase, pa 0.995 0.411 0.869 1e-118
37787327 557 nicotinate phosphoribosyltransferase-lik 0.995 0.412 0.882 1e-117
343172726 559 nicotinate phosphoribosyltransferase, pa 0.995 0.411 0.873 1e-117
449463957 561 PREDICTED: nicotinate phosphoribosyltran 0.995 0.409 0.886 1e-117
>gi|224081698|ref|XP_002306477.1| predicted protein [Populus trichocarpa] gi|222855926|gb|EEE93473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/230 (93%), Positives = 221/230 (96%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           MRSG+PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFR IEKEFGVP F KMSI
Sbjct: 306 MRSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRAIEKEFGVPGFGKMSI 365

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDV 120
           TASNDLNEETLDALNKQGHEVDA+GIGTYLVTCYAQAALGCVFKLVEIN QPRIKLSEDV
Sbjct: 366 TASNDLNEETLDALNKQGHEVDAYGIGTYLVTCYAQAALGCVFKLVEINNQPRIKLSEDV 425

Query: 121 SKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVE 180
           SKVSIPCKKRSYRLYG+EGYPLVDIMTGENEP PKVGERILCRHPFNESKRAYVVPQ+VE
Sbjct: 426 SKVSIPCKKRSYRLYGREGYPLVDIMTGENEPSPKVGERILCRHPFNESKRAYVVPQQVE 485

Query: 181 ELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
           ELLKCYWPGSSDK REDLP LKD R+RCIKQLE MRPDHMRRLNPTPYKV
Sbjct: 486 ELLKCYWPGSSDKPREDLPPLKDIRDRCIKQLEIMRPDHMRRLNPTPYKV 535

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224094304|ref|XP_002310133.1| predicted protein [Populus trichocarpa] gi|222853036|gb|EEE90583.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565240|ref|XP_002523612.1| nicotinate phosphoribosyltransferase, putative [Ricinus communis] gi|223537174|gb|EEF38807.1| nicotinate phosphoribosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356511877|ref|XP_003524648.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|225438748|ref|XP_002282786.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082406|emb|CBI21411.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|343172724|gb|AEL99065.1| nicotinate phosphoribosyltransferase, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|37787327|gb|AAP69614.1| nicotinate phosphoribosyltransferase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|343172726|gb|AEL99066.1| nicotinate phosphoribosyltransferase, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|449463957|ref|XP_004149696.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query231
TAIR|locus:2046872557 NAPRT2 "nicotinate phosphoribo 0.995 0.412 0.865 3e-108
TAIR|locus:2115095559 NAPRT1 "nicotinate phosphoribo 0.995 0.411 0.852 1.5e-106
FB|FBgn0031589555 CG3714 [Drosophila melanogaste 0.982 0.409 0.611 2.2e-73
DICTYBASE|DDB_G0268472589 naprt "nicotinate phosphoribos 0.987 0.387 0.548 1.5e-65
WB|WBGene00021882562 Y54G2A.17 [Caenorhabditis eleg 0.978 0.402 0.538 1e-61
UNIPROTKB|Q95XX1562 Y54G2A.17 "Nicotinate phosphor 0.978 0.402 0.538 1e-61
UNIPROTKB|F1NA80383 NAPRT1 "Uncharacterized protei 0.987 0.595 0.421 3.4e-45
UNIPROTKB|F1NY99539 NAPRT1 "Uncharacterized protei 0.987 0.423 0.421 3.4e-45
UNIPROTKB|A5PK51538 NAPRT1 "Nicotinate phosphoribo 0.978 0.420 0.436 1.3e-43
UNIPROTKB|Q6XQN6538 NAPRT1 "Nicotinate phosphoribo 0.978 0.420 0.432 4.5e-43
TAIR|locus:2046872 NAPRT2 "nicotinate phosphoribosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 199/230 (86%), Positives = 214/230 (93%)

Query:     1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
             M+SG+PNFCAVALALND GYKA+GIRLDSGDLAYLS EAR FF T+E+E  VP F KM +
Sbjct:   304 MKSGIPNFCAVALALNDFGYKALGIRLDSGDLAYLSREARNFFCTVERELKVPGFGKMVV 363

Query:    61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDV 120
             TASNDLNEET+DALNKQGHEVDAFGIGTYLVTCY+QAALGCVFKLVEIN QPRIKLSEDV
Sbjct:   364 TASNDLNEETIDALNKQGHEVDAFGIGTYLVTCYSQAALGCVFKLVEINNQPRIKLSEDV 423

Query:   121 SKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVE 180
             +KVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGER+LCRHPFNESKRAYVVPQ+VE
Sbjct:   424 TKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERLLCRHPFNESKRAYVVPQRVE 483

Query:   181 ELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
             ELLKCYW GS+D+ RE LP LK+ R+RCIKQLE MRPDHMRRLNPTPYKV
Sbjct:   484 ELLKCYWRGSADEAREVLPPLKEIRDRCIKQLENMRPDHMRRLNPTPYKV 533
GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0009435 "NAD biosynthetic process" evidence=IEA
GO:0019358 "nicotinate nucleotide salvage" evidence=IEA;ISS
GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA
TAIR|locus:2115095 NAPRT1 "nicotinate phosphoribosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0031589 CG3714 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268472 naprt "nicotinate phosphoribosyltransferase-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00021882 Y54G2A.17 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q95XX1 Y54G2A.17 "Nicotinate phosphoribosyltransferase" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1NA80 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY99 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5PK51 NAPRT1 "Nicotinate phosphoribosyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6XQN6 NAPRT1 "Nicotinate phosphoribosyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.2LOW CONFIDENCE prediction!
4th Layer2.4.2.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query231
PLN02885545 PLN02885, PLN02885, nicotinate phosphoribosyltrans 0.0
PRK09243464 PRK09243, PRK09243, nicotinate phosphoribosyltrans 2e-58
TIGR01513443 TIGR01513, NAPRTase_put, putative nicotinate phosp 2e-54
cd01570327 cd01570, NAPRTase_A, Nicotinate phosphoribosyltran 5e-51
pfam04095245 pfam04095, NAPRTase, Nicotinate phosphoribosyltran 4e-32
PRK12484443 PRK12484, PRK12484, nicotinate phosphoribosyltrans 2e-28
cd01567343 cd01567, NAPRTase_PncB, Nicotinate phosphoribosylt 2e-26
COG1488405 COG1488, PncB, Nicotinic acid phosphoribosyltransf 7e-23
cd00516281 cd00516, PRTase_typeII, Phosphoribosyltransferase 7e-15
cd01401377 cd01401, PncB_like, Nicotinate phosphoribosyltrans 8e-05
PRK05321400 PRK05321, PRK05321, nicotinate phosphoribosyltrans 8e-05
cd01571302 cd01571, NAPRTase_B, Nicotinate phosphoribosyltran 2e-04
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase Back     alignment and domain information 
 Score =  517 bits (1333), Expect = 0.0
 Identities = 203/230 (88%), Positives = 218/230 (94%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           M+SG+PNFCAVALALNDLGYKAVGIRLDSGDLAYLS EARKFFRTIE+E GVP F KMSI
Sbjct: 292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSI 351

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDV 120
           TASND+NEETLDALNKQGHE+DAFGIGT+LVTCYAQ ALGCV+KLVEIN QPRIKLSEDV
Sbjct: 352 TASNDINEETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDV 411

Query: 121 SKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVE 180
            KV+IPCKKR YRLYGKEGYPLVD+MTGENEPPPKVGERILCRHPFNESKRAYVVPQ+VE
Sbjct: 412 EKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERILCRHPFNESKRAYVVPQRVE 471

Query: 181 ELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
           ELLKCYW GSS K RE+LP+LK+ RERC+KQLE+MRPDHMRRLNPTPYKV
Sbjct: 472 ELLKCYWDGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKV 521

Length = 545
>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A Back     alignment and domain information
>gnl|CDD|202885 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>gnl|CDD|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information
>gnl|CDD|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238805 cd01571, NAPRTase_B, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 231
PLN02885545 nicotinate phosphoribosyltransferase 100.0
PRK09243464 nicotinate phosphoribosyltransferase; Validated 100.0
TIGR01513443 NAPRTase_put putative nicotinate phosphoribosyltra 100.0
PRK12484443 nicotinate phosphoribosyltransferase; Provisional 100.0
PRK09198463 putative nicotinate phosphoribosyltransferase; Pro 100.0
PHA02594470 nadV nicotinamide phosphoribosyl transferase; Prov 100.0
COG1488405 PncB Nicotinic acid phosphoribosyltransferase [Coe 100.0
KOG2511420 consensus Nicotinic acid phosphoribosyltransferase 99.98
cd01401377 PncB_like Nicotinate phosphoribosyltransferase (NA 99.97
PRK05321400 nicotinate phosphoribosyltransferase; Provisional 99.97
TIGR01514394 NAPRTase nicotinate phosphoribosyltransferase. Thi 99.96
PF04095245 NAPRTase: Nicotinate phosphoribosyltransferase (NA 99.96
cd01569407 PBEF_like pre-B-cell colony-enhancing factor (PBEF 99.94
cd01570327 NAPRTase_A Nicotinate phosphoribosyltransferase (N 99.94
PRK07188352 nicotinate phosphoribosyltransferase; Provisional 99.91
cd01567343 NAPRTase_PncB Nicotinate phosphoribosyltransferase 99.85
PRK08662343 nicotinate phosphoribosyltransferase; Reviewed 99.77
cd01571302 NAPRTase_B Nicotinate phosphoribosyltransferase (N 99.7
cd00516281 PRTase_typeII Phosphoribosyltransferase (PRTase) t 99.28
PF01729169 QRPTase_C: Quinolinate phosphoribosyl transferase, 98.04
PRK08385278 nicotinate-nucleotide pyrophosphorylase; Provision 97.23
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 97.18
PRK07896289 nicotinate-nucleotide pyrophosphorylase; Provision 96.77
cd01573272 modD_like ModD; Quinolinate phosphoribosyl transfe 96.51
PRK07428288 nicotinate-nucleotide pyrophosphorylase; Provision 96.05
PRK05742277 nicotinate-nucleotide pyrophosphorylase; Provision 96.04
PRK09016296 quinolinate phosphoribosyltransferase; Validated 95.59
TIGR00078265 nadC nicotinate-nucleotide pyrophosphorylase. Syno 94.81
PRK06106281 nicotinate-nucleotide pyrophosphorylase; Provision 94.25
cd01568269 QPRTase_NadC Quinolinate phosphoribosyl transferas 93.61
TIGR00640132 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal 93.07
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 92.95
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 92.2
TIGR01182204 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho 91.56
PRK06096284 molybdenum transport protein ModD; Provisional 90.65
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 90.16
cd01572268 QPRTase Quinolinate phosphoribosyl transferase (QA 90.1
PRK07114222 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 90.08
COG2185143 Sbm Methylmalonyl-CoA mutase, C-terminal domain/su 89.75
PRK08072277 nicotinate-nucleotide pyrophosphorylase; Provision 89.64
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 89.55
cd02072128 Glm_B12_BD B12 binding domain of glutamate mutase 89.36
PRK02261137 methylaspartate mutase subunit S; Provisional 89.13
PF01081196 Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 88.77
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 88.1
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 87.57
PRK07455187 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 87.49
COG0157280 NadC Nicotinate-nucleotide pyrophosphorylase [Coen 87.39
PRK06978294 nicotinate-nucleotide pyrophosphorylase; Provision 87.21
PRK06543281 nicotinate-nucleotide pyrophosphorylase; Provision 86.78
TIGR01305343 GMP_reduct_1 guanosine monophosphate reductase, eu 86.53
cd00564196 TMP_TenI Thiamine monophosphate synthase (TMP synt 86.47
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 86.44
PRK05096346 guanosine 5'-monophosphate oxidoreductase; Provisi 86.23
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 85.98
TIGR00693196 thiE thiamine-phosphate pyrophosphorylase. This mo 85.38
PRK09140206 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R 84.95
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 84.76
PRK06559290 nicotinate-nucleotide pyrophosphorylase; Provision 84.65
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 84.28
COG0800211 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca 83.82
TIGR01334277 modD putative molybdenum utilization protein ModD. 83.79
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 82.79
PLN02716308 nicotinate-nucleotide diphosphorylase (carboxylati 81.68
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 81.62
PRK05581220 ribulose-phosphate 3-epimerase; Validated 81.51
PRK14057254 epimerase; Provisional 80.39
>PLN02885 nicotinate phosphoribosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=3.2e-67  Score=505.35  Aligned_cols=229  Identities=87%  Similarity=1.415  Sum_probs=221.6

Q ss_pred             CcCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913            1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE   80 (231)
Q Consensus         1 l~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~   80 (231)
                      ++||++|||+|+++|+++|+++.|||+|||||++||+++|++||+++|+|+++|+++++|++||||||++|.+|.++|++
T Consensus       292 l~sg~~n~~~v~~~l~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~~~g~~  371 (545)
T PLN02885        292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALNKQGHE  371 (545)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEeeCCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeEeecCCCCceeeeeeecCCCCCCCCCcce
Q 026913           81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI  160 (231)
Q Consensus        81 id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~~  160 (231)
                      ||+|||||+|+||.++|+++||||||++||+|++|+|++++|.|+||+|+|||+||++|++.+|+|++.+|++|..++++
T Consensus       372 id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~  451 (545)
T PLN02885        372 IDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERI  451 (545)
T ss_pred             ccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEecCCCCCCCCCCce
Confidence            99999999999999999999999999999999999999999999999999999998779999999999999767778899


Q ss_pred             eecCCCCcccceeecCccccccceeeeeCCC--CeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCCCCcCC
Q 026913          161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSS--DKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL  231 (231)
Q Consensus       161 ~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~--G~~~~~~~sl~~iR~~~~~~l~~L~~~~~rl~~p~~Y~V~  231 (231)
                      +|+||+++|+++.+.++.+++||+++|  ++  |+++++.|+|++||+|++++|++||++++|+.||++|+|.
T Consensus       452 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~--~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p~~y~V~  522 (545)
T PLN02885        452 LCRHPFNESKRAYVVPQRVEELLKCYW--DGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVS  522 (545)
T ss_pred             EEeCCccchheeeeccccHHhhhHHHe--ECCCCcCcCCCCCHHHHHHHHHHHHhhCCHHHHhccCCccceec
Confidence            999999999999999999999999999  66  8888999999999999999999999999999999999984

>PRK09243 nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>PRK12484 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional Back     alignment and domain information
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information
>PRK05321 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase Back     alignment and domain information
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2 Back     alignment and domain information
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like Back     alignment and domain information
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B Back     alignment and domain information
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport Back     alignment and domain information
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK09016 quinolinate phosphoribosyltransferase; Validated Back     alignment and domain information
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase Back     alignment and domain information
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>TIGR01182 eda Entner-Doudoroff aldolase Back     alignment and domain information
>PRK06096 molybdenum transport protein ModD; Provisional Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] Back     alignment and domain information
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) Back     alignment and domain information
>PRK02261 methylaspartate mutase subunit S; Provisional Back     alignment and domain information
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Back     alignment and domain information
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase Back     alignment and domain information
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01334 modD putative molybdenum utilization protein ModD Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK14057 epimerase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query231
2f7f_A494 Crystal Structure Of Enterococcus Faecalis Putative 1e-25
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative Nicotinate Phosphoribosyltransferase, New York Structural Genomics Consortium Length = 494 Back     alignment and structure 
Iteration: 1

 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 25/240 (10%)
Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           +++GVP+   VA  + D     +G+R+DSGD+AY+S       + + ++     F +  I
Sbjct: 238 LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYIS-------KRVREQLDEAGFTEAKI 289
Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIK 115
            ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I  +       IK
Sbjct: 290 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 349
Query: 116 LSEDVSKVSIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNESK 170
           LS +  KV+ P KK+ +R+  K     EG    D +T  NE  P+  E I   HP +   
Sbjct: 350 LSSNAEKVTTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTFI 404
Query: 171 RAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
             YV   +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V
Sbjct: 405 NKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPV 462

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query231
2f7f_A494 Nicotinate phosphoribosyltransferase, putative; st 2e-87
2i1o_A398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 8e-56
2i14_A395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 3e-46
3os4_A407 Naprtase, nicotinate phosphoribosyltransferase; st 8e-38
1vlp_A441 Naprtase, nicotinate phosphoribosyltransferase; st 9e-37
1yir_A408 Naprtase 2, nicotinate phosphoribosyltransferase 2 1e-33
1ybe_A449 Naprtase, nicotinate phosphoribosyltransferase; st 3e-30
2im5_A394 Nicotinate phosphoribosyltransferase; structural g 1e-25
3dhf_A484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 6e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Length = 494 Back     alignment and structure
 Score =  266 bits (681), Expect = 2e-87
 Identities = 76/235 (32%), Positives = 117/235 (49%), Gaps = 15/235 (6%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           +++GVP+   VA  + D     +G+R+DSGD+AY+S   R+       +     F +  I
Sbjct: 238 LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYISKRVRE-------QLDEAGFTEAKI 289

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEIN-----KQPRIK 115
            ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I       +  IK
Sbjct: 290 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 349

Query: 116 LSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVV 175
           LS +  KV+ P KK+ +R+  K                P+  E I   HP +     YV 
Sbjct: 350 LSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVR 409

Query: 176 PQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
             +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V
Sbjct: 410 DFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPV 462
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Length = 398 Back     alignment and structure
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Length = 395 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Length = 407 Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Length = 441 Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Length = 408 Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Length = 449 Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Length = 394 Back     alignment and structure
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Length = 484 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query231
2f7f_A494 Nicotinate phosphoribosyltransferase, putative; st 100.0
3dhf_A484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 100.0
2i14_A395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 100.0
2i1o_A398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 100.0
2im5_A394 Nicotinate phosphoribosyltransferase; structural g 99.97
1yir_A408 Naprtase 2, nicotinate phosphoribosyltransferase 2 99.97
1ybe_A449 Naprtase, nicotinate phosphoribosyltransferase; st 99.97
3os4_A407 Naprtase, nicotinate phosphoribosyltransferase; st 99.97
4hl7_A446 Naprtase, nicotinate phosphoribosyltransferase; st 99.97
1vlp_A441 Naprtase, nicotinate phosphoribosyltransferase; st 99.96
2jbm_A299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 99.16
3c2e_A294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 98.75
3gnn_A298 Nicotinate-nucleotide pyrophosphorylase; decode bi 98.47
2b7n_A273 Probable nicotinate-nucleotide pyrophosphorylase; 98.42
3paj_A320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 98.41
1qap_A296 Quinolinic acid phosphoribosyltransferase; glycosy 97.98
1qpo_A284 Quinolinate acid phosphoribosyl transferase; type 97.29
3tqv_A287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 97.12
1o4u_A285 Type II quinolic acid phosphoribosyltransferase; s 96.92
3l0g_A300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 96.58
1x1o_A286 Nicotinate-nucleotide pyrophosphorylase; transfera 96.13
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 90.33
2yxb_A161 Coenzyme B12-dependent mutase; alpha/beta, structu 90.12
3khj_A361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 86.47
2v82_A212 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l 85.62
3hgj_A349 Chromate reductase; TIM barrel, oxidoreductase; HE 85.59
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 85.41
3l5l_A363 Xenobiotic reductase A; TIM barrel, oxidoreductase 83.94
1wa3_A205 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, 83.64
1tqx_A227 D-ribulose-5-phosphate 3-epimerase, putative; stru 83.31
1z41_A338 YQJM, probable NADH-dependent flavin oxidoreductas 83.17
4fo4_A366 Inosine 5'-monophosphate dehydrogenase; structural 82.91
1rpx_A230 Protein (ribulose-phosphate 3-epimerase); chloropl 80.84
3ffs_A400 Inosine-5-monophosphate dehydrogenase; beta-alpha 80.14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
Probab=100.00  E-value=1.1e-54  Score=414.85  Aligned_cols=219  Identities=37%  Similarity=0.550  Sum_probs=206.7

Q ss_pred             CcCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913            1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE   80 (231)
Q Consensus         1 l~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~   80 (231)
                      ++|||++||+++++|.+. ..+.|||+|||||.++++++|++||++       |+++++|++|||||+++|.+|.++|++
T Consensus       238 l~~gv~~al~~~~~l~~~-~~~~gIRlDSgd~~~l~~~~r~~ld~~-------G~~~~kI~aSggld~~~i~~l~~~G~~  309 (494)
T 2f7f_A          238 LKAGVPSAIRVAREMGDK-INFLGVRIDSGDMAYISKRVREQLDEA-------GFTEAKIYASNDLDENTILNLKMQKSK  309 (494)
T ss_dssp             TTTHHHHHHHHHHHHGGG-SEEEEEEECSSCHHHHHHHHHHHHHHT-------TCTTCEEEECSSCCHHHHHHHHHTTCC
T ss_pred             hhhhHHHHHHHHHHhhhh-cCCeEEEcCCCCHHHHHHHHHHHHHhC-------CCCceEEEEECCCCHHHHHHHHHcCCC
Confidence            358999999999998654 468899999999999999999999998       888999999999999999999999999


Q ss_pred             ccEEeeCCcccccCCCCccceEEEEeEE---CCc--cccccCCCCCCCCCCccceeEeecC-CCCceeeeeeecCCCCCC
Q 026913           81 VDAFGIGTYLVTCYAQAALGCVFKLVEI---NKQ--PRIKLSEDVSKVSIPCKKRSYRLYG-KEGYPLVDIMTGENEPPP  154 (231)
Q Consensus        81 id~fGvGT~l~~~~~~p~l~~vyKlv~~---~g~--p~~K~S~~~~K~t~PG~K~v~R~~~-~~g~~~~D~i~l~~e~~~  154 (231)
                      +++|||||+|+++.++|++++|||||++   ||+  |++|+|++++|.|+||+|+|||+|+ .+|.+..|+|++.+|+++
T Consensus       310 ~~sfGvGT~Lt~~~~~~~ld~v~Klv~~~~~~G~~~pv~K~s~~~~K~s~pG~k~v~R~~~~~~g~~~~d~i~~~~e~~~  389 (494)
T 2f7f_A          310 IDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPR  389 (494)
T ss_dssp             CCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEEEEEETTTCCEEEEEEEETTCCGG
T ss_pred             EEEEecCcccccCCCCCcccEEEEEEEEEcCCCcCccccccCCCCCCcCCCCceEEEEEeecCCCeEEEEEEEecCCCCc
Confidence            9999999999999999999999999999   999  9999999999999999999999997 578999999999998643


Q ss_pred             CCCcceeecCCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCCCCcC
Q 026913          155 KVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV  230 (231)
Q Consensus       155 ~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~~~l~~L~~~~~rl~~p~~Y~V  230 (231)
                       .++.++|+||+++|+++++.++..++||+|||  ++|+++++.|||++||+|++++|++||++++|+.|||+|+|
T Consensus       390 -~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~v~--~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~r~~~p~~y~v  462 (494)
T 2f7f_A          390 -QEEEIYMFHPVHTFINKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPV  462 (494)
T ss_dssp             -GCSEEEEECSSSTTSEEEEESEEEEECCEEEE--ETTEECCCCCCHHHHHHHHHHHHHHSCHHHHCSSSCCCCCE
T ss_pred             -cccceeeeCcchhhhhccccCccchhhhhhhh--cCCEEcCCCCCHHHHHHHHHHHHHhCCHHHhcccCCcCCcc
Confidence             46678999999999999999999999999999  99999999999999999999999999999999999999998
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Back     alignment and structure
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Back     alignment and structure
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae} Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Back     alignment and structure
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Back     alignment and structure
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Back     alignment and structure
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Back     alignment and structure
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Back     alignment and structure
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 231
d2f7fa1345 c.1.17.1 (A:141-485) Putative nicotinate phosphori 1e-67
d1ytda1270 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltran 8e-36
d1yira1255 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltran 5e-32
d1ybea1266 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltran 2e-31
d1vlpa2266 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltran 7e-31
d2i14a1279 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyropho 2e-30
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 345 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

 Score =  209 bits (534), Expect = 1e-67
 Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 15/235 (6%)

Query: 1   MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
           +++GVP+   VA  + D     +G+R+DSGD+AY+S   R+             F +  I
Sbjct: 98  LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYISKRVREQLD-------EAGFTEAKI 149

Query: 61  TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIK 115
            ASNDL+E T+  L  Q  ++D +G+GT L+T Y Q ALG VFKLV I  +       IK
Sbjct: 150 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 209

Query: 116 LSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVV 175
           LS +  KV+ P KK+ +R+  K                P+  E I   HP +     YV 
Sbjct: 210 LSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVR 269

Query: 176 PQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKV 230
             +   +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V
Sbjct: 270 DFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPV 322
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 270 Back     information, alignment and structure
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 255 Back     information, alignment and structure
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 266 Back     information, alignment and structure
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 Back     information, alignment and structure
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 279 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query231
d2f7fa1345 Putative nicotinate phosphoribosyltransferase EF26 100.0
d2i14a1279 Nicotinate-nucleotide pyrophosphorylase PF1904 {Py 100.0
d1ytda1270 Nicotinate phosphoribosyltransferase Ta1145 {Therm 100.0
d1ybea1266 Nicotinate phosphoribosyltransferase, C-terminal d 100.0
d1yira1255 Nicotinate phosphoribosyltransferase, C-terminal d 99.97
d1vlpa2266 Nicotinate phosphoribosyltransferase, C-terminal d 99.97
d1qpoa1169 Quinolinic acid phosphoribosyltransferase (Nicotin 95.56
d1o4ua1170 Quinolinic acid phosphoribosyltransferase (Nicotin 95.32
d7reqa2168 Methylmalonyl-CoA mutase alpha subunit, C-terminal 93.52
d1wa3a1202 KDPG aldolase {Thermotoga maritima [TaxId: 2336]} 86.46
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 81.92
d1ccwa_137 Glutamate mutase, small subunit {Clostridium cochl 81.36
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=1.5e-59  Score=428.93  Aligned_cols=220  Identities=36%  Similarity=0.548  Sum_probs=207.4

Q ss_pred             CcCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913            1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE   80 (231)
Q Consensus         1 l~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~   80 (231)
                      +++|++||++|+++|.+. .++.|||+|||||.++++++|++||++       |+++++||+||||||++|.+|.++|++
T Consensus        98 ~~~~~~~a~~~~~~l~~~-~~~~gvR~DSGd~~~~~~~vr~~ld~~-------g~~~v~Ii~Sdglde~~I~~l~~~~~~  169 (345)
T d2f7fa1          98 LKAGVPSAIRVAREMGDK-INFLGVRIDSGDMAYISKRVREQLDEA-------GFTEAKIYASNDLDENTILNLKMQKSK  169 (345)
T ss_dssp             TTTHHHHHHHHHHHHGGG-SEEEEEEECSSCHHHHHHHHHHHHHHT-------TCTTCEEEECSSCCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHhhc-ccccCCCCCCCchHHHHHHHHHHhccc-------cCCceEEEEeCCCCHHHHHHHHHcCCc
Confidence            367999999999999764 467899999999999999999999998       999999999999999999999999999


Q ss_pred             ccEEeeCCcccccCCCCccceEEEEeEECC-----ccccccCCCCCCCCCCccceeEeecCC-CCceeeeeeecCCCCCC
Q 026913           81 VDAFGIGTYLVTCYAQAALGCVFKLVEINK-----QPRIKLSEDVSKVSIPCKKRSYRLYGK-EGYPLVDIMTGENEPPP  154 (231)
Q Consensus        81 id~fGvGT~l~~~~~~p~l~~vyKlv~~~g-----~p~~K~S~~~~K~t~PG~K~v~R~~~~-~g~~~~D~i~l~~e~~~  154 (231)
                      ||+|||||+|+|+.++|+++||||||+++|     .|++|+|++++|.|+||+|+|||+|+. +|.+..|+|++.+|. +
T Consensus       170 id~FGvGt~L~~~~~~p~l~~v~Klv~i~g~~g~~~p~~K~s~~~~K~t~pG~K~v~R~~~~~~~~~~~D~i~l~~e~-~  248 (345)
T d2f7fa1         170 IDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVWRITRKSDKKSEGDYVTLWNED-P  248 (345)
T ss_dssp             CCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEEEEEETTTCCEEEEEEEETTCC-G
T ss_pred             eeEeecCcceeecCCCCcccchhcceeecCCCCceeeeeeecCCCCCcCCCCCeeEEEEecCCCCeeEeEEEeecCCC-C
Confidence            999999999999999999999999999987     499999999999999999999999975 488999999999996 4


Q ss_pred             CCCcceeecCCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCCCCcCC
Q 026913          155 KVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL  231 (231)
Q Consensus       155 ~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~~~l~~L~~~~~rl~~p~~Y~V~  231 (231)
                      ..++.+.|+||.++++++.++++.+++||+|||  ++|+++.+.|||++||+|++++|++||++++|+.|||+|+|.
T Consensus       249 ~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~--~~Gk~v~~~~sl~eiR~r~~~~l~~l~~~~~rl~nP~~Y~V~  323 (345)
T d2f7fa1         249 RQEEEIYMFHPVHTFINKYVRDFEARPVLQDIF--VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVD  323 (345)
T ss_dssp             GGCSEEEEECSSSTTSEEEEESEEEEECCEEEE--ETTEECCCCCCHHHHHHHHHHHHHHSCHHHHCSSSCCCCCEE
T ss_pred             CcCcceeeecCccchhheeccCcchhhhhhHHh--cCCEEeCCCCCHHHHHHHHHHHHHhCCHHHhcccCCcCCeec
Confidence            567788899999999999999999999999999  999999999999999999999999999999999999999983
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} Back     information, alignment and structure