Citrus Sinensis ID: 026933

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF
Secondary Structure (PSIPRED)
cEEEEEcccccEEEEEEEccccHHHHHHHHHcccccccccccEEEccEEccccccccccccccccEEEEEEEEcccEEEEEEEccccEEEEEccccccHHHHHHHccccccccccccEEEEccEEccccccccccccccccEEEEEEEEcccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEcccEEccccccccccccccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccc
Coil and Loop (DISEMBL)
MQIFVKTltgktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGMQIFVKTLTGktitlevessdtiDNVKAKiqdkegippdqQRLIFAGkqledgrtladyniqkesTLHLVLRLRGGGF
Flexible Loop (DISEMBL)
mqifvktltgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLtgktitlevessdtidnVKAKIqdkegippdqqRLIFAGKQLEDGRTLAdyniqkestlhlvLRLRGGGF
Low Complexity Region (SEG)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF
Disordered region (IsUnstruct)
***FVKTLTGKTITLEV************************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES**TI******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES***I******************RLIFAGKQLEDGRTLADYNIQKESTLHLVLRL*****
Disordered Region (DISOPRED)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG*
Disordered Region (DISEMBL)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF
Disordered Region (DISPRO)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
P0CH32	382	Polyubiquitin 4 OS=Arabid	yes	no	1.0	0.602	0.995	1e-127
Q1EC66	306	Polyubiquitin 3 OS=Arabid	no	no	1.0	0.751	0.995	1e-127
P0CH05	458	Polyubiquitin OS=Petrosel	N/A	no	1.0	0.502	0.995	1e-127
P0CH04	458	Polyubiquitin OS=Petrosel	N/A	no	1.0	0.502	0.995	1e-127
Q8H159	457	Polyubiquitin 10 OS=Arabi	no	no	0.991	0.498	1.0	1e-127
P0CG85	457	Polyubiquitin OS=Nicotian	N/A	no	0.991	0.498	1.0	1e-127
Q3E7T8	305	Polyubiquitin 14 OS=Arabi	no	no	0.991	0.747	1.0	1e-126
P69325	305	Polyubiquitin OS=Glycine	no	no	0.991	0.747	1.0	1e-126
P69322	381	Polyubiquitin OS=Pisum sa	N/A	no	0.991	0.598	1.0	1e-126
P69309	305	Polyubiquitin OS=Avena fa	N/A	no	0.991	0.747	1.0	1e-126

>sp|P0CH32|UBQ4_ARATH Polyubiquitin 4 OS=Arabidopsis thaliana GN=UBQ4 PE=1 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1EC66|UBQ3_ARATH Polyubiquitin 3 OS=Arabidopsis thaliana GN=UBQ3 PE=1 SV=1

 Score =  455 bits (1170), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CH05|UBI2P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-2 PE=3 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Petroselinum crispum (taxid: 4043)

>sp|P0CH04|UBI1P_PETCR Polyubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=2 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 458

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Petroselinum crispum (taxid: 4043)

>sp|Q8H159|UBQ10_ARATH Polyubiquitin 10 OS=Arabidopsis thaliana GN=UBQ10 PE=1 SV=2

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CG85|UBI1P_NICSY Polyubiquitin OS=Nicotiana sylvestris GN=UBI11 PE=2 SV=1

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Nicotiana sylvestris (taxid: 4096)

>sp|Q3E7T8|UBQ14_ARATH Polyubiquitin 14 OS=Arabidopsis thaliana GN=UBQ14 PE=1 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P69325|UBIQP_SOYBN Polyubiquitin OS=Glycine max GN=SUBI-1 PE=2 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Glycine max (taxid: 3847)

>sp|P69322|UBIQP_PEA Polyubiquitin OS=Pisum sativum GN=PU1 PE=2 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Pisum sativum (taxid: 3888)

>sp|P69309|UBIQP_AVEFA Polyubiquitin OS=Avena fatua PE=2 SV=2

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Avena fatua (taxid: 4499)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
357440433	312	Ubiquitin [Medicago truncatula] gi|35547	0.995	0.733	1.0	1e-126
356545971	269	PREDICTED: polyubiquitin-like [Glycine m	1.0	0.855	0.995	1e-126
297812245	382	hypothetical protein ARALYDRAFT_488966 [	1.0	0.602	0.995	1e-126
297808451	383	predicted protein [Arabidopsis lyrata su	1.0	0.600	0.991	1e-126
18420267	382	polyubiquitin 4 [Arabidopsis thaliana] g	1.0	0.602	0.995	1e-126
424513675	359	polyubiquitin [Bathycoccus prasinos]	0.769	0.493	1.0	1e-126
30679945	306	polyubiquitin 3 [Arabidopsis thaliana] g	1.0	0.751	0.995	1e-126
28436481	250	putative polyubiquitin [Arabidopsis thal	1.0	0.92	0.995	1e-126
297809843	309	hypothetical protein ARALYDRAFT_490270 [	0.991	0.737	1.0	1e-126
297810399	306	hypothetical protein ARALYDRAFT_487095 [	1.0	0.751	0.995	1e-126

>gi|357440433|ref|XP_003590494.1| Ubiquitin [Medicago truncatula] gi|355479542|gb|AES60745.1| Ubiquitin [Medicago truncatula]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545971|ref|XP_003541406.1| PREDICTED: polyubiquitin-like [Glycine max]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 40  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 99

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 100 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 159

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 160 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 219

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 220 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812245|ref|XP_002874006.1| hypothetical protein ARALYDRAFT_488966 [Arabidopsis lyrata subsp. lyrata] gi|297319843|gb|EFH50265.1| hypothetical protein ARALYDRAFT_488966 [Arabidopsis lyrata subsp. lyrata]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808451|ref|XP_002872109.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297317946|gb|EFH48368.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 154 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 213

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 214 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 273

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 274 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 333

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEG+PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 334 KIQDKEGVPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 383

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420267|ref|NP_568397.1| polyubiquitin 4 [Arabidopsis thaliana] gi|297826781|ref|XP_002881273.1| hypothetical protein ARALYDRAFT_482268 [Arabidopsis lyrata subsp. lyrata] gi|302595977|sp|P0CH32.1|UBQ4_ARATH RecName: Full=Polyubiquitin 4; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|17678|emb|CAA31331.1| unnamed protein product [Arabidopsis thaliana] gi|987519|gb|AAB53929.1| polyubiquitin [Arabidopsis thaliana] gi|297327112|gb|EFH57532.1| hypothetical protein ARALYDRAFT_482268 [Arabidopsis lyrata subsp. lyrata] gi|332005484|gb|AED92867.1| polyubiquitin 4 [Arabidopsis thaliana] gi|226499|prf||1515347A poly-ubiquitin

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|424513675|emb|CCO66297.1| polyubiquitin [Bathycoccus prasinos]

 Score =  455 bits (1171), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 128 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 187

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 188 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 247

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 248 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 307

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 308 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 355

Source: Bathycoccus prasinos

Species: Bathycoccus prasinos

Genus: Bathycoccus

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|30679945|ref|NP_851029.1| polyubiquitin 3 [Arabidopsis thaliana] gi|30679951|ref|NP_568112.2| polyubiquitin 3 [Arabidopsis thaliana] gi|79326803|ref|NP_001031824.1| polyubiquitin 3 [Arabidopsis thaliana] gi|122237441|sp|Q1EC66.1|UBQ3_ARATH RecName: Full=Polyubiquitin 3; Contains: RecName: Full=Ubiquitin; Flags: Precursor gi|7413601|emb|CAB86091.1| polyubiquitin (ubq3) [Arabidopsis thaliana] gi|9757775|dbj|BAB08384.1| polyubiquitin [Arabidopsis thaliana] gi|27311629|gb|AAO00780.1| polyubiquitin (UBQ3) [Arabidopsis thaliana] gi|108385299|gb|ABF85770.1| At5g03240 [Arabidopsis thaliana] gi|222423646|dbj|BAH19791.1| AT5G03240 [Arabidopsis thaliana] gi|332003191|gb|AED90574.1| polyubiquitin 3 [Arabidopsis thaliana] gi|332003192|gb|AED90575.1| polyubiquitin 3 [Arabidopsis thaliana] gi|332003193|gb|AED90576.1| polyubiquitin 3 [Arabidopsis thaliana]

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28436481|gb|AAO43307.1| putative polyubiquitin [Arabidopsis thaliana]

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 80

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 140

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 141 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 200

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 201 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809843|ref|XP_002872805.1| hypothetical protein ARALYDRAFT_490270 [Arabidopsis lyrata subsp. lyrata] gi|297318642|gb|EFH49064.1| hypothetical protein ARALYDRAFT_490270 [Arabidopsis lyrata subsp. lyrata]

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810399|ref|XP_002873083.1| hypothetical protein ARALYDRAFT_487095 [Arabidopsis lyrata subsp. lyrata] gi|297318920|gb|EFH49342.1| hypothetical protein ARALYDRAFT_487095 [Arabidopsis lyrata subsp. lyrata]

 Score =  455 bits (1170), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
           FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2180434	382	UBQ4 "AT5G20620" [Arabidopsis	1.0	0.602	0.995	5.6e-116
TAIR|locus:2143548	306	UBQ3 "AT5G03240" [Arabidopsis	1.0	0.751	0.995	5.6e-116
TAIR|locus:2115663	457	UBQ10 "AT4G05320" [Arabidopsis	0.991	0.498	1.0	2.4e-115
TAIR|locus:2140200	305	UBQ14 "AT4G02890" [Arabidopsis	0.991	0.747	1.0	2.4e-115
TAIR|locus:2138386	229	UBQ11 "AT4G05050" [Arabidopsis	0.991	0.995	1.0	2.4e-115
POMBASE|SPBC337.08c	382	ubi4 "ubiquitin" [Schizosaccha	1.0	0.602	0.969	1.2e-113
SGD|S000003962	381	UBI4 "Ubiquitin" [Saccharomyce	0.991	0.598	0.973	1.9e-113
UNIPROTKB|G4MY63	305	MGG_01282 "Polyubiquitin" [Mag	0.991	0.747	0.973	1.9e-113
CGD|CAL0004945	229	UBI4 [Candida albicans (taxid:	0.991	0.995	0.973	1.9e-113
UNIPROTKB|Q5ADS0	229	UBI4 "Putative uncharacterized	0.991	0.995	0.973	1.9e-113

TAIR|locus:2180434 UBQ4 "AT5G20620" [Arabidopsis thaliana (taxid:3702)]

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 272

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   273 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 332

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct:   333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 382

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2143548 UBQ3 "AT5G03240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1143 (407.4 bits), Expect = 5.6e-116, P = 5.6e-116
 Identities = 229/230 (99%), Positives = 229/230 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG F
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF 306

GO:0005622 "intracellular" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0010224 "response to UV-B" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

TAIR|locus:2115663 UBQ10 "AT4G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   349 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 408

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456

GO:0006464 "cellular protein modification process" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0007568 "aging" evidence=IEP

TAIR|locus:2140200 UBQ14 "AT4G02890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

TAIR|locus:2138386 UBQ11 "AT4G05050" [Arabidopsis thaliana (taxid:3702)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 228/228 (100%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
Sbjct:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228

GO:0005622 "intracellular" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

POMBASE|SPBC337.08c ubi4 "ubiquitin" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 1121 (399.7 bits), Expect = 1.2e-113, P = 1.2e-113
 Identities = 223/230 (96%), Positives = 229/230 (99%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:   213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 332

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF 230
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG F
Sbjct:   333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGLF 382

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0007126 "meiosis" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=NAS

GO:0016579 "protein deubiquitination" evidence=NAS

GO:0031386 "protein tag" evidence=NAS

SGD|S000003962 UBI4 "Ubiquitin" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 222/228 (97%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:   213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 272

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 332

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IC

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0031386 "protein tag" evidence=ISS

GO:0006950 "response to stress" evidence=TAS

GO:0006513 "protein monoubiquitination" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0030437 "ascospore formation" evidence=TAS

GO:0016579 "protein deubiquitination" evidence=TAS

GO:0043008 "ATP-dependent protein binding" evidence=TAS

UNIPROTKB|G4MY63 MGG_01282 "Polyubiquitin" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 222/228 (97%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:   137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 196

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 256

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

CGD|CAL0004945 UBI4 [Candida albicans (taxid:5476)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 222/228 (97%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228

GO:0016567 "protein ubiquitination" evidence=IGI;ISS;IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0031386 "protein tag" evidence=IGI;ISS

GO:0030447 "filamentous growth" evidence=IMP

GO:0033554 "cellular response to stress" evidence=IEP;IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

UNIPROTKB|Q5ADS0 UBI4 "Putative uncharacterized protein UBI4" [Candida albicans SC5314 (taxid:237561)]

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 222/228 (97%), Positives = 228/228 (100%)

Query:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
             IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI
Sbjct:    61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120

Query:   121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA 180
             FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK+
Sbjct:   121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKS 180

Query:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009405 "pathogenesis" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IGI;ISS;IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0031386 "protein tag" evidence=IGI;ISS

GO:0033554 "cellular response to stress" evidence=IEP;IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0036166 "phenotypic switching" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CG81	UBIQH_DICDI	No assigned EC number	0.9473	0.9913	0.5984	yes	no
P62976	UBIQP_CRIGR	No assigned EC number	0.9605	0.9913	0.3465	yes	no
P42739	UBIQP_ACECL	No assigned EC number	0.9521	1.0	0.5437	N/A	no
P0CG84	UBI4P_NICSY	No assigned EC number	1.0	0.9913	0.6047	N/A	no
P0CG85	UBI1P_NICSY	No assigned EC number	1.0	0.9913	0.4989	N/A	no
P69315	UBIQP_LINUS	No assigned EC number	0.9956	0.9913	0.7475	N/A	no
Q1EC66	UBQ3_ARATH	No assigned EC number	0.9956	1.0	0.7516	no	no
P0CG82	UBIQP_TETPY	No assigned EC number	0.9473	0.9913	0.5984	N/A	no
P23324	UBIQP_EUPEU	No assigned EC number	0.9605	0.9913	0.9956	N/A	no
P0CG66	UBC_GORGO	No assigned EC number	0.9605	0.9913	0.3743	N/A	no
P0CG88	UBIQJ_DICDI	No assigned EC number	0.9473	0.9913	0.7475	no	no
P0CG50	UBC_MOUSE	No assigned EC number	0.9605	0.9913	0.3106	yes	no
P0CG71	UBIQ1_CAEEL	No assigned EC number	0.9605	0.9913	0.2720	yes	no
P0CG70	UBI4P_NEUCR	No assigned EC number	0.9736	0.9913	0.7475	N/A	no
P0CH27	RL402_TRYCR	No assigned EC number	0.9736	0.9913	0.6404	N/A	no
P0CG72	UBI4P_SCHPO	No assigned EC number	0.9695	1.0	0.6020	yes	no
P0CG75	UBI4P_KLULA	No assigned EC number	0.9736	0.9913	0.5984	yes	no
P0CG74	UBI4P_CANAX	No assigned EC number	0.9736	0.9913	0.7475	N/A	no
P0CG53	UBB_BOVIN	No assigned EC number	0.9605	0.9913	0.7475	yes	no
P0CH05	UBI2P_PETCR	No assigned EC number	0.9956	1.0	0.5021	N/A	no
P0CH04	UBI1P_PETCR	No assigned EC number	0.9956	1.0	0.5021	N/A	no
P0CH28	UBC_BOVIN	No assigned EC number	0.9605	0.9913	0.3304	yes	no
P0CG55	UBB_SHEEP	No assigned EC number	0.9605	0.9913	0.7475	N/A	no
P0CG54	UBB_CAVPO	No assigned EC number	0.9521	1.0	0.7395	yes	no
Q58G87	UBQ3_ORYSJ	No assigned EC number	1.0	0.9913	0.5984	no	no
P59669	UBIQP_GEOCY	No assigned EC number	0.9605	0.9913	0.4989	N/A	no
Q3E7T8	UBQ14_ARATH	No assigned EC number	1.0	0.9913	0.7475	no	no
Q8MKD1	UBB_HORSE	No assigned EC number	0.9561	0.9913	0.7475	no	no
P0CG73	UBI1P_CANAX	No assigned EC number	0.9692	0.9913	0.9956	N/A	no
P69309	UBIQP_AVEFA	No assigned EC number	1.0	0.9913	0.7475	N/A	no
P0CG49	UBB_MOUSE	No assigned EC number	0.9605	0.9913	0.7475	no	no
P69322	UBIQP_PEA	No assigned EC number	1.0	0.9913	0.5984	N/A	no
P42740	UBIQP_AGLNE	No assigned EC number	0.9561	0.9913	0.4989	N/A	no
P69325	UBIQP_SOYBN	No assigned EC number	1.0	0.9913	0.7475	no	no
P0CG62	UBB_CHICK	No assigned EC number	0.9605	0.9913	0.7475	yes	no
P0CG63	UBI4P_YEAST	No assigned EC number	0.9736	0.9913	0.5984	yes	no
P0CG60	UBB_PONPY	No assigned EC number	0.9605	0.9913	0.9956	N/A	no
P0CG61	UBC_PONPY	No assigned EC number	0.9605	0.9913	0.2996	N/A	no
P0CH32	UBQ4_ARATH	No assigned EC number	0.9956	1.0	0.6020	yes	no
P0CH33	UBQ11_ARATH	No assigned EC number	1.0	0.9913	0.9956	no	no
P0CG65	UBB_PANTR	No assigned EC number	0.9605	0.9913	0.9956	yes	no
Q63429	UBC_RAT	No assigned EC number	0.9605	0.9913	0.2814	yes	no
P0CG47	UBB_HUMAN	No assigned EC number	0.9605	0.9913	0.9956	yes	no
P0CG67	UBB_GORGO	No assigned EC number	0.9605	0.9913	0.9956	N/A	no
P0CG51	UBB_RAT	No assigned EC number	0.9605	0.9913	0.7475	no	no
Q8H159	UBQ10_ARATH	No assigned EC number	1.0	0.9913	0.4989	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0006_2333 Putative polyubiquitin (383 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
cd01803	76	cd01803, Ubiquitin, Ubiquitin	2e-46
cd01803	76	cd01803, Ubiquitin, Ubiquitin	2e-46
cd01803	76	cd01803, Ubiquitin, Ubiquitin	2e-46
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-29
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-29
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-29
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	4e-29
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	4e-29
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	4e-29
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	6e-27
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	6e-27
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	6e-27
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-25
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-25
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-25
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-22
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-22
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-22
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	4e-19
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	4e-19
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	4e-19
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-17
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-17
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	2e-17
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-15
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-15
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	2e-15
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	2e-14
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	2e-14
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	2e-14
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	4e-13
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	4e-13
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	4e-13
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	8e-13
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	8e-13
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	8e-13
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	9e-13
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	9e-13
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	9e-13
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	5e-12
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	5e-12
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	5e-12
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	7e-11
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	7e-11
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	7e-11
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	4e-10
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	4e-10
cd01797	78	cd01797, NIRF_N, amino-terminal ubiquitin-like dom	4e-10
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	1e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	1e-09
cd01810	74	cd01810, ISG15_repeat2, ISG15 ubiquitin-like prote	1e-09
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-09
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-09
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	4e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	4e-09
COG5272	57	COG5272, UBI4, Ubiquitin [Posttranslational modifi	4e-09
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	1e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	1e-06
cd01794	70	cd01794, DC_UbP_C, dendritic cell derived ubiquiti	1e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	7e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	7e-06
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	7e-06
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	9e-06
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	9e-06
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	9e-06
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	5e-05
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	5e-05
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	5e-05
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	1e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	1e-04
cd01792	80	cd01792, ISG15_repeat1, ISG15 ubiquitin-like prote	1e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	5e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	5e-04
pfam13881	111	pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUM	5e-04
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	7e-04
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	7e-04
cd01804	78	cd01804, midnolin_N, Ubiquitin-like domain of midn	0.001
cd01799	75	cd01799, Hoil1_N, Ubiquitin-like domain of HOIL1	0.004
cd01799	75	cd01799, Hoil1_N, Ubiquitin-like domain of HOIL1	0.004
cd01799	75	cd01799, Hoil1_N, Ubiquitin-like domain of HOIL1	0.004

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  148 bits (374), Expect = 2e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  148 bits (374), Expect = 2e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score =  148 bits (374), Expect = 2e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (262), Expect = 2e-29
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1  IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 61 IQKESTLHLVLR 72
          IQ  ST+HLVLR
Sbjct: 61 IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (262), Expect = 2e-29
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 137 IQKESTLHLVLR 148
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score =  104 bits (262), Expect = 2e-29
 Identities = 47/72 (65%), Positives = 57/72 (79%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL GKTITLEV+ SDT+  +K KI +  GIPP+QQRLI+ GK LED RTLADY 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 213 IQKESTLHLVLR 224
           IQ  ST+HLVLR
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (260), Expect = 4e-29
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65
          KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1  KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 66 TLHLVLRLR 74
          TLHLVLRLR
Sbjct: 61 TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (260), Expect = 4e-29
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 142 TLHLVLRLR 150
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score =  103 bits (260), Expect = 4e-29
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 217
           KTL GKTITLEV+ SDT+  +K KI+DKEGIP DQQRLIF+GK LED  TL++Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 218 TLHLVLRLR 226
           TLHLVLRLR
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 6e-27
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          ++  S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 6e-27
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 98.3 bits (245), Expect = 6e-27
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           ++  S LHLVL LRGG
Sbjct: 61  LEGGSVLHLVLALRGG 76

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.6 bits (236), Expect = 1e-25
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1  TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 64 ESTLHLVLR 72
           STLHLVLR
Sbjct: 61 GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.6 bits (236), Expect = 1e-25
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 140 ESTLHLVLR 148
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 94.6 bits (236), Expect = 1e-25
 Identities = 46/69 (66%), Positives = 54/69 (78%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VKTLTGKT  LEV   DT+  +KAKI  KEG+PP+QQRLI+AGK L+D +TL+DY IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 216 ESTLHLVLR 224
            STLHLVLR
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 86.0 bits (213), Expect = 4e-22
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1  MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          +   ST+H+VL+LRGG
Sbjct: 61 VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 86.0 bits (213), Expect = 4e-22
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 86.0 bits (213), Expect = 4e-22
 Identities = 38/76 (50%), Positives = 52/76 (68%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQI +KTLTGK  +   E  +T+  VK  +Q+KEGI   Q RLI++GKQ+ D   L+DY 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           +   ST+H+VL+LRGG
Sbjct: 61  VVPGSTIHMVLQLRGG 76

Length = 76

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 61  IQKESTLHLVLRLRGG 76
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 137 IQKESTLHLVLRLRGG 152
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 39/76 (51%), Positives = 50/76 (65%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M++F++TLTG    L V   +T+ +VKAKIQ  EGIP  QQ LI+   +LED   L DYN
Sbjct: 28  MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87

Query: 213 IQKESTLHLVLRLRGG 228
           I +  TL LVL +RGG
Sbjct: 88  ISEGCTLKLVLAMRGG 103

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-17
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 59
          ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1  IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 60 NIQKESTLHLVL 71
          +I+   T+ +V+
Sbjct: 61 DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-17
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 135
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 136 NIQKESTLHLVL 147
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 73.3 bits (181), Expect = 2e-17
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLADY 211
           ++I +K   GK + ++V+ + T+  +    + K GIP DQQ RLIF G++L+   T+ADY
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 212 NIQKESTLHLVL 223
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 58
          M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1  MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 59 YNI 61
          Y I
Sbjct: 61 YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 134
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 135 YNI 137
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLAD 210
           M+I  KTL  +T  +EV+  DT+  +K KI++++G   PP+QQ+LI++GK L+D  TL +
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 211 YNI 213
           Y I
Sbjct: 61  YKI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1  IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 61 IQKESTLHLVLR 72
          ++   T+HLV R
Sbjct: 61 VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 137 IQKESTLHLVLR 148
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 32/72 (44%), Positives = 50/72 (69%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           ++I VKTL  +T T  VE   T+ ++K KI ++ GIP +QQRLI++G+ L+D  TL++Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 213 IQKESTLHLVLR 224
           ++   T+HLV R
Sbjct: 61  VEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 4  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63
           VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1  KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 64 ESTLHLVLR 72
             L LV R
Sbjct: 61 GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 80  FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 139
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 140 ESTLHLVLR 148
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query: 156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 215
            VK   GKT+ L V S  T+ ++K K+  K G+PP+QQRL+  GK L D  TL DY +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 216 ESTLHLVLR 224
              L LV R
Sbjct: 61  GDELVLVPR 69

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 8e-13
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1  VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 63 KESTLHLVLR 72
          ++S LH V R
Sbjct: 61 QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 8e-13
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 139 KESTLHLVLR 148
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 61.3 bits (149), Expect = 8e-13
 Identities = 27/70 (38%), Positives = 46/70 (65%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           ++V+T TG T  +EV+    I  +K  +  ++G+PPDQ R+IFAGK+L +  T+ + ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 215 KESTLHLVLR 224
           ++S LH V R
Sbjct: 61  QQSILHAVRR 70

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1  MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 61 IQKESTLHLVLRLRGG 76
          +++  TL +  RL GG
Sbjct: 59 VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 137 IQKESTLHLVLRLRGG 152
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 61.3 bits (149), Expect = 9e-13
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FV+     T TLEV   +T+ ++KA +   EGI  + Q L+ AG  LED  TL    
Sbjct: 1   MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCG 58

Query: 213 IQKESTLHLVLRLRGG 228
           +++  TL +  RL GG
Sbjct: 59  VEELCTLEVAGRLLGG 74

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1  MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 61 IQKESTLHLVLR 72
          I   + L+LV+R
Sbjct: 61 IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 137 IQKESTLHLVLR 148
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 26/72 (36%), Positives = 45/72 (62%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + VK L G+  +L+V   +++  +K  + +   +P +QQRL+F GK L D + L+DY+
Sbjct: 1   MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYS 60

Query: 213 IQKESTLHLVLR 224
           I   + L+LV+R
Sbjct: 61  IGPNAKLNLVVR 72

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5  LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 68 HLVLRLRGG 76
          HL L+ RGG
Sbjct: 65 HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 144 HLVLRLRGG 152
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 23/69 (33%), Positives = 42/69 (60%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   ++ SD +  +K KI ++ G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 5   LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTII 64

Query: 220 HLVLRLRGG 228
           HL L+ RGG
Sbjct: 65  HLQLKERGG 73

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          YN+     + L++R
Sbjct: 61 YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176392 cd01797, NIRF_N, amino-terminal ubiquitin-like domain of Np95 and NIRF

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ GK T T++  S  T ++ ++ KIQ+   + P+ QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           YN+     + L++R
Sbjct: 61  YNVGLNDIIQLLVR 74

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation. Length = 78

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 3  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1  ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 63 KESTLHLVLRLRGG 76
             T+ + LRLRGG
Sbjct: 61 PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 79  IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 139 KESTLHLVLRLRGG 152
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|176405 cd01810, ISG15_repeat2, ISG15 ubiquitin-like protein, second repeat of 2

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 24/74 (32%), Positives = 42/74 (56%)

Query: 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           I V+   G++   EV+ + T+  +K ++  +E +  DQ  L F G+ +ED   L +Y ++
Sbjct: 1   ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLK 60

Query: 215 KESTLHLVLRLRGG 228
              T+ + LRLRGG
Sbjct: 61  PGCTVFMNLRLRGG 74

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 74

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1  MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           M +  KTL  +   +++E  +T+  +K KI+ ++G    P  QQ+LI++GK L D +T+ 
Sbjct: 1   MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVK 60

Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56
              +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1  DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|227597 COG5272, UBI4, Ubiquitin [Posttranslational modification, protein turnover, chaperones]

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
               +K  TG     E + +   D    K   ++    ++  L+   + LE  R  
Sbjct: 1   DAKPIKKATGGAAKPESQLAKAKDTRPEKQYAEQDSQLNEMALMDCERNLEASRIS 56

Length = 57

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64
          V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3  VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 65 STLHLVL 71
            + +++
Sbjct: 63 YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 81  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 141 STLHLVL 147
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176389 cd01794, DC_UbP_C, dendritic cell derived ubiquitin-like protein

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 216
           V+  TGK + L V S DT+  +K ++Q  EG+ P  QR  F+GK L D   L +  IQK+
Sbjct: 3   VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKD 62

Query: 217 STLHLVL 223
             + +++
Sbjct: 63  YVVQVIV 69

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis. Length = 70

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1  IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 61 IQKESTLHLVLR 72
          I+   T+HLV++
Sbjct: 60 IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 137 IQKESTLHLVLR 148
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K   +E+    ++ + K  +  K     +Q  LIFAGK L+D  TL  +N
Sbjct: 1   IKVTVKTPKDKE-EIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHN 59

Query: 213 IQKESTLHLVLR 224
           I+   T+HLV++
Sbjct: 60  IKDGLTVHLVIK 71

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69
          G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9  GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 70 V 70
          +
Sbjct: 69 L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 146 V 146
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 221
           G++  L + S  T  ++K  +    G+ P  Q+LIF GK+ +D  TL    ++  S + L
Sbjct: 9   GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVML 68

Query: 222 V 222
           +
Sbjct: 69  L 69

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 62
            T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9  ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 138
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQ 214
             T +L+V+    ++N KA  + + GIP  QQ+LI+ G++L ++ R LA Y ++
Sbjct: 9   ETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVK 62

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 133
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 134 DYNIQKESTLHLVLR 148
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLA 209
           G  + VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L 
Sbjct: 2   GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLV 61

Query: 210 DYNIQKESTLHLVLR 224
              +   ST+ LV++
Sbjct: 62  SQGLGPGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|176387 cd01792, ISG15_repeat1, ISG15 ubiquitin-like protein, first repeat of 2

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 5  VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLEDGRTLADYNIQ 62
          VK L G    + +  S T+  +K +I  K G+P  QQRL      + L+DG  L    + 
Sbjct: 7  VKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLG 66

Query: 63 KESTLHLVLR 72
            ST+ LV++
Sbjct: 67 PGSTVLLVVQ 76

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system. Length = 80

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 18 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 64
            + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21 SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 65 STLHLVLR 72
            +H+V+R
Sbjct: 81 IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 94  ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 140
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 141 STLHLVLR 148
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|206052 pfam13881, Rad60-SLD_2, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)

Query: 170 ESSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI------QKE 216
             + T+ ++K K+     +DKE  P  P+  +LI AGK LE+ +TL +  +         
Sbjct: 21  SPATTVADLKEKVLAQWPKDKEEGPKSPNDVKLINAGKILENNKTLGECRLPAGETPGGV 80

Query: 217 STLHLVLR 224
             +H+V+R
Sbjct: 81  IVMHVVVR 88

Length = 111

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2  MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 61 IQKESTLHLVLRLRGGM 77
          +   S L LV  +  G+
Sbjct: 61 LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 37.1 bits (86), Expect = 7e-04
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 137 IQKESTLHLVLRLRGGM 153
           +   S L LV  +  G+
Sbjct: 61  LGDGSKLTLVPTVEAGL 77

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176399 cd01804, midnolin_N, Ubiquitin-like domain of midnolin

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M + + + TG    L V   +T++ +K +I  +  +P ++  L+    +L  G  L D  
Sbjct: 2   MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLG 60

Query: 213 IQKESTLHLV 222
           +   S L LV
Sbjct: 61  LGDGSKLTLV 70

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain. Length = 78

>gnl|CDD|176394 cd01799, Hoil1_N, Ubiquitin-like domain of HOIL1

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 62
          TI L V    T+  +K K+    G PP  QR +   +   D  TL  + I+
Sbjct: 14 TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRWVIGQRLARDQETLYSHGIR 64

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Length = 75

>gnl|CDD|176394 cd01799, Hoil1_N, Ubiquitin-like domain of HOIL1

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 88  TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 138
           TI L V    T+  +K K+    G PP  QR +   +   D  TL  + I+
Sbjct: 14  TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRWVIGQRLARDQETLYSHGIR 64

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Length = 75

>gnl|CDD|176394 cd01799, Hoil1_N, Ubiquitin-like domain of HOIL1

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 16/51 (31%), Positives = 23/51 (45%)

Query: 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ 214
           TI L V    T+  +K K+    G PP  QR +   +   D  TL  + I+
Sbjct: 14  TIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRWVIGQRLARDQETLYSHGIR 64

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.84
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.84
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.84
PTZ00044	76	ubiquitin; Provisional	99.81
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.81
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.81
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.79
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.78
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.78
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.78
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.77
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.77
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.77
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.76
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.76
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.76
PTZ00044	76	ubiquitin; Provisional	99.75
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.75
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.75
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.74
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.74
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.74
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.74
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.73
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.72
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.71
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.71
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.7
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.7
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.7
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.7
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.69
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.69
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.68
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.68
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.68
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.68
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.67
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.66
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.66
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.64
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.63
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.63
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.62
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.62
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.61
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.61
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.59
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.59
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.58
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.58
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.58
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.55
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.54
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.5
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.48
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.48
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.46
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.43
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.43
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.4
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.38
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.35
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.34
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.34
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.3
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.3
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.29
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.29
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.28
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.25
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	99.2
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.2
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.18
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	99.16
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	99.08
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.07
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	99.04
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.02
PLN02560	308	enoyl-CoA reductase	99.0
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.97
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.87
PLN02560	308	enoyl-CoA reductase	98.83
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.83
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.78
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.74
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.72
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.69
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.67
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.66
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.54
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.53
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.5
KOG4495	110	consensus RNA polymerase II transcription elongati	98.47
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.45
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	98.41
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.39
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	98.37
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.17
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.16
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	98.09
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.09
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	98.07
KOG4495	110	consensus RNA polymerase II transcription elongati	97.85
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.83
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.68
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.63
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	97.59
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.52
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.46
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.43
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.41
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.31
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.28
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	97.27
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.27
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	97.25
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	97.11
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	97.08
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	97.06
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	96.99
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	96.99
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	96.98
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	96.96
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	96.92
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	96.88
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.87
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	96.87
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	96.85
KOG1639	297	consensus Steroid reductase required for elongatio	96.81
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	96.79
PRK06437	67	hypothetical protein; Provisional	96.61
COG5417	81	Uncharacterized small protein [Function unknown]	96.56
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.52
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	96.39
KOG1639	297	consensus Steroid reductase required for elongatio	96.17
KOG0013	231	consensus Uncharacterized conserved protein [Funct	96.13
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	96.06
COG5417	81	Uncharacterized small protein [Function unknown]	95.92
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	95.9
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	95.83
PRK06437	67	hypothetical protein; Provisional	95.46
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	95.4
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	95.38
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	95.26
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	95.23
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	95.12
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	94.95
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	94.81
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	94.76
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	94.62
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	94.34
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	94.22
KOG4583	391	consensus Membrane-associated ER protein involved	94.04
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	94.04
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	94.01
PRK08364	70	sulfur carrier protein ThiS; Provisional	94.0
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	93.78
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	93.48
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	93.34
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	93.1
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	92.96
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	92.67
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	92.58
PRK08364	70	sulfur carrier protein ThiS; Provisional	92.51
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	92.45
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	92.31
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	92.2
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	92.15
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	92.13
PRK06488	65	sulfur carrier protein ThiS; Validated	91.98
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	91.83
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	91.54
PRK06488	65	sulfur carrier protein ThiS; Validated	91.52
PF14453	57	ThiS-like: ThiS-like ubiquitin	91.44
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	91.24
smart00455	70	RBD Raf-like Ras-binding domain.	91.12
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	90.65
KOG4598	1203	consensus Putative ubiquitin-specific protease [Po	90.57
PF12754	309	Blt1: Cell-cycle control medial ring component; In	90.53
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	90.43
KOG4583	391	consensus Membrane-associated ER protein involved	90.4
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	90.26
smart00455	70	RBD Raf-like Ras-binding domain.	90.17
PRK07440	70	hypothetical protein; Provisional	89.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.81
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	89.78
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	89.64
PRK05659	66	sulfur carrier protein ThiS; Validated	89.5
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	89.18
PRK06083	84	sulfur carrier protein ThiS; Provisional	89.18
PRK05863	65	sulfur carrier protein ThiS; Provisional	89.12
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	89.06
KOG0012	380	consensus DNA damage inducible protein [Replicatio	88.92
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	88.87
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	88.4
PF12754	309	Blt1: Cell-cycle control medial ring component; In	88.19
PRK08053	66	sulfur carrier protein ThiS; Provisional	88.04
PRK07696	67	sulfur carrier protein ThiS; Provisional	87.77
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	87.64
PF14453	57	ThiS-like: ThiS-like ubiquitin	87.63
KOG0012	380	consensus DNA damage inducible protein [Replicatio	87.58
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	87.36
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	87.19
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	87.08
PRK05863	65	sulfur carrier protein ThiS; Provisional	86.72
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	86.47
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	86.41
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	86.0
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	85.94
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	85.8
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	85.6
KOG2086	380	consensus Protein tyrosine phosphatase SHP1/Cofact	85.27
cd01818	77	TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleo	84.99
PF14732	87	UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquiti	83.79
KOG4261	1003	consensus Talin [Cytoskeleton]	83.65
PRK05659	66	sulfur carrier protein ThiS; Validated	83.31
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	83.15
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	82.39
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	82.26
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	82.03
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	81.45
cd01817	73	RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS	81.26
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	81.13
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	81.08
PRK06944	65	sulfur carrier protein ThiS; Provisional	81.02
KOG2689	290	consensus Predicted ubiquitin regulatory protein [	80.97
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	80.65
PRK07440	70	hypothetical protein; Provisional	80.55
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	80.4

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.84  E-value=1.6e-20  Score=129.99  Aligned_cols=96  Identities=44%  Similarity=0.642  Sum_probs=90.5

Q ss_pred             cccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcc
Q 026933           57 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN  136 (230)
Q Consensus        57 ~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~  136 (230)
                      .-+++..-+++++.+++.+.|+|+|+..+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~   87 (103)
T cd01802           8 PFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN   87 (103)
T ss_pred             CccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcC
Confidence            34667777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCceEEEEEeecc
Q 026933          137 IQKESTLHLVLRLRGG  152 (230)
Q Consensus       137 i~~~~~i~l~~~~~~~  152 (230)
                      |.++++|++.+++.+|
T Consensus        88 I~~~stL~l~~~l~GG  103 (103)
T cd01802          88 ISEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCCCEEEEEEecCCC
Confidence            9999999999987764

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.84  E-value=2.6e-20  Score=128.89  Aligned_cols=95  Identities=44%  Similarity=0.647  Sum_probs=90.9

Q ss_pred             hcccccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCC
Q 026933          134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI  213 (230)
Q Consensus       134 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i  213 (230)
                      -+++.+-+++++.+++.+.|+++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I   88 (103)
T cd01802           9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI   88 (103)
T ss_pred             ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence            35677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEecCC
Q 026933          214 QKESTLHLVLRLRGG  228 (230)
Q Consensus       214 ~~g~~i~l~~~~~~g  228 (230)
                      ++|++|++.++++||
T Consensus        89 ~~~stL~l~~~l~GG  103 (103)
T cd01802          89 SEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCCEEEEEEecCCC
Confidence            999999999999987

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.84  E-value=1.2e-20  Score=123.65  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=71.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999875

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>PTZ00044 ubiquitin; Provisional

Probab=99.81  E-value=1.2e-19  Score=119.73  Aligned_cols=75  Identities=49%  Similarity=0.803  Sum_probs=72.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|+++++++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++.+
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g   75 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987643

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.81  E-value=1.2e-19  Score=119.52  Aligned_cols=75  Identities=36%  Similarity=0.618  Sum_probs=71.6

Q ss_pred             CEEEEEccCCcE-EEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~-~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++..|++ ++++ +.+++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~   77 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            999999999997 6895 89999999999999999999999999999999999999999999999999999998754

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.81  E-value=1.4e-19  Score=118.47  Aligned_cols=73  Identities=40%  Similarity=0.596  Sum_probs=69.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+||+.  ++++++|++++||+++|.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+++.+
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~G   73 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLG   73 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            89999984  78999999999999999999999999999999999999999999999999999999999988754

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.79  E-value=4.5e-19  Score=115.01  Aligned_cols=70  Identities=24%  Similarity=0.383  Sum_probs=68.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|+|++..|+.+.++++|++||++||.+|++..|+|+++|+|.|.|+.|+|+.+|++|||.+++++||.
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.78  E-value=6.5e-19  Score=115.39  Aligned_cols=73  Identities=36%  Similarity=0.653  Sum_probs=70.6

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      |+|+|+..+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++++++++++++
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.78  E-value=1.4e-18  Score=114.53  Aligned_cols=75  Identities=55%  Similarity=0.948  Sum_probs=72.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g   75 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG   75 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987643

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.78  E-value=1.2e-18  Score=114.86  Aligned_cols=75  Identities=96%  Similarity=1.311  Sum_probs=72.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g   75 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   75 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988643

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.77  E-value=1.5e-18  Score=114.49  Aligned_cols=75  Identities=25%  Similarity=0.491  Sum_probs=71.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|++..|+.+++++++++||++||.+|++..|+|+++|+|.|.|+.|+|+ +|++||+.+++++++.....++
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence            89999999999999999999999999999999999999999999999999999 9999999999999999876544

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.77  E-value=1.3e-18  Score=113.98  Aligned_cols=72  Identities=31%  Similarity=0.575  Sum_probs=69.5

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+++.|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~   72 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLR   72 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEcc
Confidence            689999999999999999999999999999999999999999999999999999999999999999998764

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.77  E-value=1.5e-18  Score=113.61  Aligned_cols=74  Identities=41%  Similarity=0.621  Sum_probs=69.6

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |+++|+.  .+++++++++++||+++|++|+++.|+|++.|+|+|+|+.|+|+++|++|+|+++++|++++++.||
T Consensus         1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            4577776  3689999999999999999999999999999999999999999999999999999999999999987

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.76  E-value=4e-18  Score=112.64  Aligned_cols=73  Identities=38%  Similarity=0.705  Sum_probs=70.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC--CCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi--p~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+++++++++++||.+||++|++.+|+  |+++|+|+|+|+.|+|+.+|++||+.+++++++.++.
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            899999999999999999999999999999999999  9999999999999999999999999999999988754

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.76  E-value=3.3e-18  Score=111.59  Aligned_cols=72  Identities=44%  Similarity=0.704  Sum_probs=69.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|+||+++|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.+++++++..+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            899999999999999999999999999999999999999999999999999999999999999999998753

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.76  E-value=2.3e-18  Score=111.01  Aligned_cols=68  Identities=37%  Similarity=0.581  Sum_probs=66.0

Q ss_pred             EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      .|+.++|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.+
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            58999999999999999999999999999999999999999999999999999999999999999975

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>PTZ00044 ubiquitin; Provisional

Probab=99.75  E-value=3.9e-18  Score=112.39  Aligned_cols=76  Identities=50%  Similarity=0.822  Sum_probs=73.4

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.++++||
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999999887

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.75  E-value=3.3e-18  Score=111.97  Aligned_cols=74  Identities=32%  Similarity=0.618  Sum_probs=71.3

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ++|++..|+++++++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|||++++++++.+++.||
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999876

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.75  E-value=4e-18  Score=112.23  Aligned_cols=75  Identities=36%  Similarity=0.618  Sum_probs=70.8

Q ss_pred             eeeEEEccCCcE-Eeec-cCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           77 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        77 ~~v~v~~~~g~~-~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      |+|+|++.+|+. +.++ +++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||.++++|++++++.+
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~   77 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            789999999997 6885 89999999999999999999999999999999999999999999999999999998754

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.74  E-value=7.9e-18  Score=109.17  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=68.1

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      |.|+|++..|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+.+|++||+.+|++||+..
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999999863

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.74  E-value=8.8e-18  Score=110.86  Aligned_cols=77  Identities=25%  Similarity=0.483  Sum_probs=73.1

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      .|+|+|+...|+.+.+++++++||++||++|+++.++|+++|+|+|.|+.|+|+ +|++||+.+|++|+++..+.+|+
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~   77 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL   77 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence            378999999999999999999999999999999999999999999999999999 99999999999999998887764

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.74  E-value=5e-18  Score=109.97  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=67.5

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|+++.|+++++++++++||+++|.+|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++|+..+
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999753

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01803 Ubiquitin Ubiquitin

Probab=99.74  E-value=1.1e-17  Score=110.17  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=73.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |.++|+...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++++|++|++.+++.||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            4688999999999999999999999999999999999999999999999999999999999999999999999887

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.73  E-value=1.7e-17  Score=109.38  Aligned_cols=76  Identities=55%  Similarity=0.965  Sum_probs=73.0

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |.++|+..+|+++.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+++|++|++++|++|++.++.+||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            4688999999999999999999999999999999999999999999999999999999999999999999999887

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.72  E-value=1.5e-17  Score=110.42  Aligned_cols=73  Identities=32%  Similarity=0.431  Sum_probs=70.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeE--EecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l--~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++..|+++.+++++++||++||.+|++..|+|+++|+|  .|+|+.|+|+.+|++||+.+++++++.++.
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            7899999999999999999999999999999999999999999  789999999999999999999999998763

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.71  E-value=2e-17  Score=106.57  Aligned_cols=68  Identities=37%  Similarity=0.581  Sum_probs=65.5

Q ss_pred             EEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      .|+..+|+++.+++++++||+++|++|++..|+|+++|+|+|+|+.|+|+.+|.+|++.++++|++++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            57889999999999999999999999999999999999999999999999999999999999999875

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=9.9e-19  Score=116.67  Aligned_cols=76  Identities=99%  Similarity=1.337  Sum_probs=72.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+++|+++.|++.++++.|++||..+|.+|++..||||+.|+|.|+|+.|+|..|+++|||...+++|+.+++.++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998876544

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.70  E-value=6.7e-17  Score=106.75  Aligned_cols=73  Identities=38%  Similarity=0.705  Sum_probs=69.8

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCC--CCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      |+|+|++.+|+.+.+++++++||++||++|++.+|+  |+++|+|+|+|+.|+|+.+|++||+++|++|+++++.
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            689999999999999999999999999999999999  9999999999999999999999999999999988764

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.70  E-value=4.2e-17  Score=105.61  Aligned_cols=70  Identities=39%  Similarity=0.733  Sum_probs=66.8

Q ss_pred             eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      |+|++.+|+.+.+++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++||++++++++++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            5788999999999999999999999999999999999999999999999999999999999999998753

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.70  E-value=6.5e-17  Score=105.01  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=67.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|++..|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||+.+++++|+.++
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            67999999997 599999999999999999999999999999999999999999999999999999999864

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.70  E-value=6.8e-17  Score=104.43  Aligned_cols=68  Identities=56%  Similarity=0.962  Sum_probs=65.3

Q ss_pred             EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         6 ~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+++|+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            57899999999999999999999999999999999999999999999999999999999999998764

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=1.7e-17  Score=119.04  Aligned_cols=76  Identities=96%  Similarity=1.328  Sum_probs=73.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|+++.|++.++++.+++||..+|.+||+..|||+++|||+|.|+.|+|..+|++|+|...+++++++++.++
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg   76 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999987654

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.69  E-value=5.6e-17  Score=105.11  Aligned_cols=68  Identities=35%  Similarity=0.543  Sum_probs=64.5

Q ss_pred             EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEE
Q 026933            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV   70 (230)
Q Consensus         3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~   70 (230)
                      |+|++. +|+++.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+ .+|++|||.+++.+++.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            578999 999999999999999999999999999999999999999999987 68999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.7e-17  Score=97.26  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=68.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |.|.|+++.|+.+.+++.|.++|..+|++|+...||||.+|||.|.|+.+.|+.+-++|++..+|.+|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999973

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.68  E-value=1.3e-16  Score=103.96  Aligned_cols=71  Identities=44%  Similarity=0.692  Sum_probs=68.4

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++++++.
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence            67999999999999999999999999999999999999999999999999999999999999999998875

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.68  E-value=1.7e-16  Score=102.51  Aligned_cols=69  Identities=57%  Similarity=0.970  Sum_probs=65.3

Q ss_pred             eeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026933          158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       158 ~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~  226 (230)
                      ++.+|+.+++++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            356789999999999999999999999999999999999999999999999999999999999998864

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.68  E-value=1.9e-16  Score=105.11  Aligned_cols=73  Identities=32%  Similarity=0.431  Sum_probs=70.0

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEE--EecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L--~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      |+++|+..+|+.+.+++++++||++||++|++..++|+++|+|  .|+|+.|+|+.+|++||+.+|++|+++++.
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            7899999999999999999999999999999999999999999  899999999999999999999999998874

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.67  E-value=1.4e-16  Score=104.68  Aligned_cols=69  Identities=32%  Similarity=0.653  Sum_probs=66.8

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +|+++++++++++||++||++|+...|+|++.|+|+|+|+.|+|+++|++|+|++|++|+++++++||+
T Consensus         6 ~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~   74 (76)
T cd01800           6 NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR   74 (76)
T ss_pred             CCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence            688999999999999999999999999999999999999999999999999999999999999999885

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.66  E-value=2.8e-16  Score=102.10  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=66.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      |+|+|+.. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++++++..
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            68999997 99999999999999999999999999999999999999999999999999999999998863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.66  E-value=2.4e-16  Score=103.57  Aligned_cols=68  Identities=32%  Similarity=0.655  Sum_probs=64.8

Q ss_pred             cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      ++|+++++++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~g   72 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERG   72 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCC
Confidence            57999999999999999999999999999999999999999999999999999999999999988644

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.64  E-value=5.1e-16  Score=100.75  Aligned_cols=71  Identities=34%  Similarity=0.489  Sum_probs=66.1

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      +.|+|++.+|+ ..+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||++++++|+++++
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            46888999886 589999999999999999999999999999999999999999999999999999998764

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.63  E-value=7.5e-16  Score=100.38  Aligned_cols=71  Identities=25%  Similarity=0.282  Sum_probs=63.3

Q ss_pred             CEEEEEccCCcE--EEEEecCCCcHHHHHHHhhhhhC--CCCCceeEEecCccccCCccccccc--cccCCeEEEEE
Q 026933            1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~--~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~l~d~~~l~~~~--i~~~~~i~l~~   71 (230)
                      |.++||+.+|+.  +++++++++||++||++|++..+  .|+++|+|.|+|+.|+|+.+|++|.  +.++.++||+.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            579999999998  45555899999999999999885  4579999999999999999999996  99999999973

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.63  E-value=7.1e-16  Score=99.91  Aligned_cols=68  Identities=35%  Similarity=0.543  Sum_probs=63.2

Q ss_pred             eEEEcc-CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCC-cchhhcccccCCceEEE
Q 026933           79 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV  146 (230)
Q Consensus        79 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~  146 (230)
                      ++|++. +|+.+.+++++++||++||.+|+++.|+|++.|+|+|+|+.|+|+ .+|++||+++|+++++.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            467888 899999999999999999999999999999999999999999887 68999999999998763

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.62  E-value=1.8e-15  Score=98.63  Aligned_cols=71  Identities=25%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             eeeEEEccCCcE--EeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcc--cccCCceEEEE
Q 026933           77 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~--i~~~~~i~l~~  147 (230)
                      +.++|++++++.  +.+++++++||++||++|++..+  .|+++|+|+|.|+.|+|+.+|++|.  +.++.+|||+.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            679999999988  55566899999999999999875  5589999999999999999999996  99999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=4.7e-16  Score=92.56  Aligned_cols=70  Identities=54%  Similarity=0.911  Sum_probs=67.0

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      |.|.|++++|+.+.++++++++|..+|++++++.||||.+|||+|.|+.+.|+.+-++|++..||++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5688999999999999999999999999999999999999999999999999999999999999999874

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.61  E-value=2.2e-15  Score=98.21  Aligned_cols=69  Identities=23%  Similarity=0.427  Sum_probs=64.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe---cCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~---~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |.|.|+. +|+++++++++++||++||++|++.+|+|+++|+|+|   .|+.+.|+.+|++|++.+++.++++
T Consensus         1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            5788854 6999999999999999999999999999999999996   8999999999999999999998886

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.61  E-value=4.4e-15  Score=100.03  Aligned_cols=78  Identities=18%  Similarity=0.446  Sum_probs=74.5

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ..+.+.|+...|+.+.+++.+++|++.||++++++.|+|++.++|+|+|+.|+++.|+.+|++++|++|++++++.||
T Consensus        10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763          10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            346788899999999999999999999999999999999999999999999999999999999999999999999998

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.59  E-value=3.6e-15  Score=96.84  Aligned_cols=69  Identities=29%  Similarity=0.490  Sum_probs=64.9

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      ++|.|+.. |+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|.|+.+|++||+++|++|+++
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence            46788876 8889999999999999999999999999999999999999999999999999999999876

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.59  E-value=9.4e-15  Score=98.44  Aligned_cols=79  Identities=18%  Similarity=0.439  Sum_probs=74.9

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ...|.|.|++.+|+.+.++|.+++|+..||.+++++.|+|++.|+|+|+|+.|+++.|+.+|++.++++|++++++.+|
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            3468899999999999999999999999999999999999999999999999999999999999999999999988765

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.58  E-value=5.6e-15  Score=96.24  Aligned_cols=68  Identities=24%  Similarity=0.439  Sum_probs=62.7

Q ss_pred             eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe---cCcccCCCcchhhcccccCCceEEE
Q 026933           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      .|.|+ .+|+.+.+++++++||++||++|++.+++|+++|+|+|   .|+.+.|+.+|++|++++|+.|.++
T Consensus         2 ~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           2 PVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             EEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            46665 57888999999999999999999999999999999996   8999999999999999999999876

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=2e-16  Score=105.70  Aligned_cols=76  Identities=97%  Similarity=1.298  Sum_probs=73.1

Q ss_pred             eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .+++....|+++.+++++.+||..+|.+|....|+|++.|+|+|+|+.|+|+.||++|+|+.-|+|+++.|++||.
T Consensus         2 ~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~   77 (128)
T KOG0003|consen    2 QIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI   77 (128)
T ss_pred             cEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence            4678888999999999999999999999999999999999999999999999999999999999999999999984

>smart00213 UBQ Ubiquitin homologues

Probab=99.58  E-value=5.8e-15  Score=93.78  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=61.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES   65 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~   65 (230)
                      |+|+|+..+ +++.+++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+++
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            899999998 7999999999999999999999999999999999999999999999999998764

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.55  E-value=2.9e-15  Score=107.67  Aligned_cols=77  Identities=95%  Similarity=1.308  Sum_probs=74.2

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      |.|+|+...++++.+++.+++||..+|++|++..+||+++|+|+|.|+.|+|+.+|+||+|+..+++++++++.||.
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~   77 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA   77 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999998883

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.54  E-value=1.8e-14  Score=93.99  Aligned_cols=69  Identities=29%  Similarity=0.372  Sum_probs=60.6

Q ss_pred             EEEEE--ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc-CCccccccccc-cCCeEEEEE
Q 026933            2 QIFVK--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL   71 (230)
Q Consensus         2 ~v~v~--~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~-d~~~l~~~~i~-~~~~i~l~~   71 (230)
                      +|+|.  ...|.++++++++++||++||++|++.+|||++.|+| |+|+.|. |+.+|++||+. +++++++.+
T Consensus         2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            44554  4568999999999999999999999999999999999 9998885 67999999998 779998864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.50  E-value=4.8e-14  Score=118.53  Aligned_cols=73  Identities=30%  Similarity=0.601  Sum_probs=70.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+||++.|+++.++|++++||.+||++|+...|   +|+++|+|+|+|+.|+|+.+|++|+|.+++.+++++.-
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            89999999999999999999999999999999998   99999999999999999999999999999999888754

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00213 UBQ Ubiquitin homologues

Probab=99.48  E-value=8.9e-14  Score=88.24  Aligned_cols=64  Identities=61%  Similarity=0.864  Sum_probs=60.3

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCC
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES  141 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~  141 (230)
                      |+|+|+..+ ..+.+++++++||++||++|++.+++|+++|+|+|+|+.|.|+.+|++||+.+|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            578898888 6899999999999999999999999999999999999999999999999999875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.48  E-value=8.8e-14  Score=92.43  Aligned_cols=61  Identities=28%  Similarity=0.346  Sum_probs=57.2

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEE
Q 026933           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLR   72 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~   72 (230)
                      ..+++|++++||.+||.+|.+.+++||.+|+|+++|+.|.|+ .||++||+.++++++|.++
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            567899999999999999999999999999999999999875 9999999999999999864

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.46  E-value=2.1e-13  Score=88.86  Aligned_cols=65  Identities=29%  Similarity=0.364  Sum_probs=58.7

Q ss_pred             EccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccC-CCcchhhcccc-cCCceEEEE
Q 026933           82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL  147 (230)
Q Consensus        82 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~~l~~~~i~-~~~~i~l~~  147 (230)
                      +...|.++.+++++++||++||++|+++.|+|++.|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            34578899999999999999999999999999999999 9998885 77999999998 789998864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.43  E-value=2.9e-13  Score=113.89  Aligned_cols=74  Identities=30%  Similarity=0.588  Sum_probs=70.5

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC---CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      |+|+||+.+|+.+.++|++++||.+||++|++..|   +|+++|+|+|+|+.|+|+.+|++|+|+++++|++++...
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~   77 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP   77 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence            68999999999999999999999999999999998   999999999999999999999999999999999887653

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.43  E-value=2.1e-13  Score=87.62  Aligned_cols=53  Identities=32%  Similarity=0.547  Sum_probs=48.7

Q ss_pred             ccCcHHHHHHHHhhHh--CCC-CCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           95 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        95 ~~~tV~~lK~~i~~~~--~i~-~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      .++||++||++|+++.  +++ +++|+|+|.|+.|+|+.||++|||++|++|+++.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            4789999999999996  465 8999999999999999999999999999999874

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.40  E-value=3.5e-13  Score=86.60  Aligned_cols=52  Identities=33%  Similarity=0.554  Sum_probs=48.3

Q ss_pred             CCcHHHHHHHhhhhh--CCC-CCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933           20 SDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus        20 ~~tv~~lK~~i~~~~--gip-~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      ++||.+||.+|++..  |+| +++|+|.|.|+.|+|+.+|++|||.+++++|++.
T Consensus        20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             cCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            579999999999996  575 9999999999999999999999999999999974

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.38  E-value=2e-12  Score=83.20  Aligned_cols=68  Identities=66%  Similarity=0.966  Sum_probs=63.8

Q ss_pred             EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      +|+..+|+.+.+++++++||.+||.+|+..+|+|+++|+|.|+|+.|+|..+|.+|++.+++.+++..
T Consensus         1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            36778899999999999999999999999999999999999999999999999999999999988763

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.35  E-value=1.6e-12  Score=89.21  Aligned_cols=75  Identities=23%  Similarity=0.315  Sum_probs=63.3

Q ss_pred             CeeeEEEccCCcEE-eeccCccCcHHHHHHHHhhHh-----CC--CCCCeEEEecCcccCCCcchhhcc------cccCC
Q 026933           76 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GI--PPDQQRLIFAGKQLEDGRTLADYN------IQKES  141 (230)
Q Consensus        76 ~~~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----~i--~~~~q~L~~~g~~L~d~~~l~~~~------i~~~~  141 (230)
                      .+.|.++..+|..+ +..+++++||++||++|++.+     ++  +++.|+|+|.|+.|+|++||++|+      +....
T Consensus         4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~   83 (113)
T cd01814           4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI   83 (113)
T ss_pred             cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence            45677778888554 778899999999999999666     34  499999999999999999999999      66668


Q ss_pred             ceEEEEEee
Q 026933          142 TLHLVLRLR  150 (230)
Q Consensus       142 ~i~l~~~~~  150 (230)
                      ++|+++++.
T Consensus        84 TmHvvlr~~   92 (113)
T cd01814          84 TMHVVVQPP   92 (113)
T ss_pred             EEEEEecCC
Confidence            888888765

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.34  E-value=3.8e-12  Score=81.89  Aligned_cols=67  Identities=67%  Similarity=0.992  Sum_probs=62.5

Q ss_pred             EEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      |+..+|+.+.+.+++++||++||.+|++.+++|+++|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            5666889999999999999999999999999999999999999999999999999999999998763

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.34  E-value=1.2e-12  Score=89.80  Aligned_cols=73  Identities=27%  Similarity=0.373  Sum_probs=63.5

Q ss_pred             EEEEEccCCc-EEEEEecCCCcHHHHHHHhh-----hhhCCC--CCceeEEecCccccCCccccccc------cccCCeE
Q 026933            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL   67 (230)
Q Consensus         2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~-----~~~gip--~~~q~l~~~g~~l~d~~~l~~~~------i~~~~~i   67 (230)
                      .|.++..+|. .=+..+++++||++||++|+     +..|+|  +++|+|+|.|+.|+|++||++|+      +....++
T Consensus         6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm   85 (113)
T cd01814           6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM   85 (113)
T ss_pred             EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence            5777888884 45788999999999999999     455666  99999999999999999999999      7777899


Q ss_pred             EEEEEec
Q 026933           68 HLVLRLR   74 (230)
Q Consensus        68 ~l~~~~~   74 (230)
                      |+++++.
T Consensus        86 Hvvlr~~   92 (113)
T cd01814          86 HVVVQPP   92 (113)
T ss_pred             EEEecCC
Confidence            9998874

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.30  E-value=5.1e-12  Score=84.10  Aligned_cols=61  Identities=28%  Similarity=0.335  Sum_probs=55.8

Q ss_pred             EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccC-CCcchhhcccccCCceEEEEE
Q 026933           88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      ...++|++++||.+||..|.+.+++||..|+|+++|+.|. |++||++||+.++++|.+.++
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            4578899999999999999999999999999999999995 578999999999999988754

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.30  E-value=9.6e-12  Score=80.86  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=65.3

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      |+|.|+..+|+.+.+.+.+++++..|++.++++.++|+ +.++|+|+|+.|+++.|++++|+.+|++|++.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            57899999999999999999999999999999999999 999999999999999999999999999998863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.29  E-value=5.1e-12  Score=106.84  Aligned_cols=74  Identities=36%  Similarity=0.565  Sum_probs=70.2

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      .++|+||+.++ ++.+.|..+.||.+||++|..++++|+++++|+|.|+.|+|+.||..|||.+|.+|||+++..
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            47899999888 889999999999999999999999999999999999999999999999999999999998754

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.29  E-value=1.1e-11  Score=80.65  Aligned_cols=71  Identities=34%  Similarity=0.633  Sum_probs=66.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      |+|+|+..+|+.+.+.|.+++++..|+++..+..|+|+ +..+|+|+|+.|+++.|++++|+.+++.+++.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            78999999999999999999999999999999999999 999999999999999999999999999998863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.28  E-value=8.4e-12  Score=100.45  Aligned_cols=74  Identities=38%  Similarity=0.657  Sum_probs=70.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC--CCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |.|+||++.|.+|++++.|++||.++|.+|+...|  .|+++|+|+|+|+.|.|+.++.+|++..++-+.+.+.-.
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            89999999999999999999999999999999999  999999999999999999999999999999888776544

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.25  E-value=1.1e-11  Score=104.73  Aligned_cols=73  Identities=37%  Similarity=0.592  Sum_probs=69.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      ++|+||+.+. .+.+.|..+.||.+||++|.+.+++|+++|+|+|.|+.|+|+.||..|||.++.++||+++..
T Consensus        16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            5799999977 899999999999999999999999999999999999999999999999999999999998763

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=99.20  E-value=5.2e-11  Score=81.29  Aligned_cols=73  Identities=32%  Similarity=0.458  Sum_probs=64.4

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCcccccccc-------ccCCeEEEEEE
Q 026933            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-------~~~~~i~l~~~   72 (230)
                      |.||++....+ ++.++..++.||.+||++|+.....||+.|+|+..++.|+|++||++||+       .....+.|.++
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence            78999988766 67899999999999999999999999999999977789999999999999       44566777766


Q ss_pred             e
Q 026933           73 L   73 (230)
Q Consensus        73 ~   73 (230)
                      -
T Consensus        81 ~   81 (119)
T cd01788          81 S   81 (119)
T ss_pred             c
Confidence            3

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.20  E-value=3.3e-11  Score=97.02  Aligned_cols=74  Identities=38%  Similarity=0.657  Sum_probs=71.0

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      |+|+||++.+++|.+++.+++||.++|.+|+...|  +|++.|+|+|+|+.|.|+.++.+|++.+++.|.+++...
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            68999999999999999999999999999999999  999999999999999999999999999999998888765

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.18  E-value=1.3e-10  Score=77.58  Aligned_cols=70  Identities=21%  Similarity=0.379  Sum_probs=57.9

Q ss_pred             EEEEEccC-CcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCc-----cc-cCCccccccccccCCeEEEEE
Q 026933            2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~-g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~-----~l-~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      .|+|+... ......++++++||.+||++++..+|+||+.|+|. +.|+     .| +|..+|.+||+.++.+||+.-
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            46666543 34455679999999999999999999999999996 7776     35 567999999999999999863

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=99.16  E-value=2e-10  Score=72.07  Aligned_cols=71  Identities=28%  Similarity=0.401  Sum_probs=64.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec--C---ccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--G---KQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g---~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      ++|+|+-.++..+.+.|+|..+|.++|++|....|++- .|||.|+  |   +.|.+..+|++|||..+.+|.++..
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT   76 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLET   76 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEec
Confidence            58999999999999999999999999999999999998 9999996  2   6688999999999999988887654

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=99.08  E-value=6.6e-10  Score=74.87  Aligned_cols=69  Identities=26%  Similarity=0.516  Sum_probs=56.5

Q ss_pred             EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-C------c-cccCCccccccccccCCeEEEE
Q 026933            2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------K-QLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g------~-~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      .|+|....-  ......+++++||++||.+|+..+|+|++.|+|.+. .      . ..+|..+|.+||+.++.+||+.
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            567766654  488899999999999999999999999999999976 1      2 2356799999999999998875

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.07  E-value=7e-10  Score=74.07  Aligned_cols=69  Identities=22%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             EEEeeec-CceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECCe-----ec-CCCCcccccCCCCCCEEEEEE
Q 026933          155 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       155 i~v~~~~-~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g~-----~L-~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      +.+.+.. ....+..+++..||++||++++..+|+|++.|+|. |.+.     .| +|.++|++|++++|++|++.=
T Consensus         4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            4444432 33456669999999999999999999999999995 7776     45 788999999999999999863

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=99.04  E-value=8.3e-10  Score=75.46  Aligned_cols=69  Identities=30%  Similarity=0.438  Sum_probs=62.2

Q ss_pred             CceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCC-------CCCCEEEEEEEecCCCC
Q 026933          162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRLRGGGF  230 (230)
Q Consensus       162 ~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i-------~~g~~i~l~~~~~~g~~  230 (230)
                      ..++-+.+.+++||.+||++|+.-...||++|+|+..+.+|+|++||++||+       +.-+++-|.+|...|.|
T Consensus        11 KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~f   86 (119)
T cd01788          11 KTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTF   86 (119)
T ss_pred             ceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCc
Confidence            4468889999999999999999999999999999977789999999999999       77999999999766654

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.02  E-value=2.1e-09  Score=69.51  Aligned_cols=72  Identities=83%  Similarity=1.130  Sum_probs=68.0

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      +++++..|+++.+++.+..+|..+|.+|....|+|++.|++.+.|+.|+|+.++.+|+|..++++++..+..
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence            578889999999999999999999999999999999999999999999999999999999999999987653

>PLN02560 enoyl-CoA reductase

Probab=99.00  E-value=1.2e-09  Score=89.95  Aligned_cols=70  Identities=31%  Similarity=0.544  Sum_probs=62.6

Q ss_pred             CEEEEEccCCcEE---EEEecCCCcHHHHHHHhhhhhCC-CCCceeEEec---C----ccccCCccccccccccCCeEEE
Q 026933            1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~---~~~v~~~~tv~~lK~~i~~~~gi-p~~~q~l~~~---g----~~l~d~~~l~~~~i~~~~~i~l   69 (230)
                      |+|+|+..+|+..   ++++++++||+|||.+|++..++ ++++|||.+.   |    ..|+|+.+|+++|+.+++++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            8999999999987   79999999999999999999987 8999999983   3    3789999999999999998665


Q ss_pred             E
Q 026933           70 V   70 (230)
Q Consensus        70 ~   70 (230)
                      .
T Consensus        81 k   81 (308)
T PLN02560         81 K   81 (308)
T ss_pred             E
Confidence            3

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.97  E-value=2.9e-09  Score=71.70  Aligned_cols=69  Identities=28%  Similarity=0.571  Sum_probs=55.6

Q ss_pred             eEEEeeecC--ceEEEEeeccccHHHHHHHhchhcCCCCCceEEEEC-C------eec-CCCCcccccCCCCCCEEEEE
Q 026933          154 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       154 ~i~v~~~~~--~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~-g------~~L-~d~~~L~~~~i~~g~~i~l~  222 (230)
                      .+.|.+...  ...+..++.+.||++||.+++..+|+|++.|+|.+. .      ..+ +|.++|.+||+++|++|++.
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            355555444  478899999999999999999999999999999865 1      233 67999999999999999985

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.87  E-value=1e-08  Score=71.71  Aligned_cols=73  Identities=30%  Similarity=0.510  Sum_probs=54.9

Q ss_pred             eeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhC-------CCCCCeEEEecCcccCCCcchhhcccccCC------c
Q 026933           77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T  142 (230)
Q Consensus        77 ~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~-------i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~  142 (230)
                      +.+.++..+|. ..++.+++++||++||+.|...|.       ..++.+||+|.|+.|+|+.+|+++++..++      +
T Consensus         3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred             EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence            45666677888 788999999999999999998773       235679999999999999999999988776      4


Q ss_pred             eEEEEEe
Q 026933          143 LHLVLRL  149 (230)
Q Consensus       143 i~l~~~~  149 (230)
                      +|+++++
T Consensus        83 mHlvvrp   89 (111)
T PF13881_consen   83 MHLVVRP   89 (111)
T ss_dssp             EEEEE-S
T ss_pred             EEEEecC
Confidence            5555554

>PLN02560 enoyl-CoA reductase

Probab=98.83  E-value=1e-08  Score=84.53  Aligned_cols=70  Identities=31%  Similarity=0.544  Sum_probs=60.6

Q ss_pred             eeeEEEccCCcEE---eeccCccCcHHHHHHHHhhHhCC-CCCCeEEEec---C----cccCCCcchhhcccccCCceEE
Q 026933           77 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        77 ~~v~v~~~~g~~~---~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~~~---g----~~L~d~~~l~~~~i~~~~~i~l  145 (230)
                      |+|.|+..+|+.+   .+++++++||++||++|+++.++ ++++|+|.+.   |    ..|+|+++|+++|+++|+++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            5688888888886   79999999999999999999986 8999999973   3    3789999999999999998765


Q ss_pred             E
Q 026933          146 V  146 (230)
Q Consensus       146 ~  146 (230)
                      -
T Consensus        81 k   81 (308)
T PLN02560         81 K   81 (308)
T ss_pred             E
Confidence            3

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.83  E-value=3.4e-08  Score=63.75  Aligned_cols=72  Identities=83%  Similarity=1.142  Sum_probs=66.8

Q ss_pred             EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~  227 (230)
                      ++....|+++.+++.+..+++.+|.+|+...|++++.|++.+.|+.|.|+.++.+|+|..++++++..++.+
T Consensus         3 ~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~   74 (75)
T KOG0001|consen    3 FVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG   74 (75)
T ss_pred             EEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence            455677899999999999999999999999999999999999999999999999999999999999988764

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=8.1e-09  Score=94.20  Aligned_cols=74  Identities=34%  Similarity=0.579  Sum_probs=70.7

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      .|+||+++.++.++.|+..+||.++|..|..+.+|+.+.||++|.|+.|.|++++.+|++ ++-++||+-++.+.
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~   77 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ   77 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence            489999999999999999999999999999999999999999999999999999999999 99999999987654

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=1.2e-08  Score=93.11  Aligned_cols=77  Identities=32%  Similarity=0.572  Sum_probs=72.2

Q ss_pred             eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeE
Q 026933           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI  155 (230)
Q Consensus        78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i  155 (230)
                      .|.||+++.++.++.+...+||.+||..|.++.+|+.+.||++|.|+.|.|++++++|++ +|-+|||+-|++++...
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~~~~   80 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQTHL   80 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCCccc
Confidence            488999999999999999999999999999999999999999999999999999999999 99999999997766433

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.72  E-value=1.1e-07  Score=66.50  Aligned_cols=72  Identities=31%  Similarity=0.505  Sum_probs=53.9

Q ss_pred             eEEEeeecCc-eEEEEeeccccHHHHHHHhchhcC-------CCCCceEEEECCeecCCCCcccccCCCCCC------EE
Q 026933          154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL  219 (230)
Q Consensus       154 ~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~g-------i~~~~~~L~~~g~~L~d~~~L~~~~i~~g~------~i  219 (230)
                      .+..+..+|+ ..++.+++.+||++||+.|...|-       ..++.++|+|.|+.|+|+.+|+++++..|+      ++
T Consensus         4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm   83 (111)
T PF13881_consen    4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM   83 (111)
T ss_dssp             EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred             EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence            4455566888 788999999999999999998872       135679999999999999999999998877      46


Q ss_pred             EEEEEe
Q 026933          220 HLVLRL  225 (230)
Q Consensus       220 ~l~~~~  225 (230)
                      ||+++.
T Consensus        84 Hlvvrp   89 (111)
T PF13881_consen   84 HLVVRP   89 (111)
T ss_dssp             EEEE-S
T ss_pred             EEEecC
Confidence            666654

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.69  E-value=2.8e-08  Score=65.40  Aligned_cols=70  Identities=29%  Similarity=0.430  Sum_probs=43.3

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC---eec--CCCCcccccCCCCCCEEEEE
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g---~~L--~d~~~L~~~~i~~g~~i~l~  222 (230)
                      .|.+.+++.+| .+.+++++++|+.+|+++|++.+++|...+.|..+.   ..+  +++++|+++|++.||.|+|.
T Consensus         4 ~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    4 SMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             --EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             cEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            35567777665 678899999999999999999999999998886322   345  57899999999999999874

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.67  E-value=7.8e-08  Score=63.13  Aligned_cols=68  Identities=26%  Similarity=0.318  Sum_probs=52.9

Q ss_pred             EEEEEccC-CcEEEEEe-cCCCcHHHHHHHhhhhhC-CCCCceeEE--ecCccccCCccccccccccCCeEEE
Q 026933            2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~-g~~~~~~v-~~~~tv~~lK~~i~~~~g-ip~~~q~l~--~~g~~l~d~~~l~~~~i~~~~~i~l   69 (230)
                      .|.++... .....+++ ++++||.+||..|....+ .++++|+|.  +.|+.|.|+.+|++||+.+++++++
T Consensus         2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801           2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            34554444 22222333 588999999999999876 579999997  6789999999999999999998765

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.66  E-value=9.8e-08  Score=62.67  Aligned_cols=52  Identities=29%  Similarity=0.379  Sum_probs=46.7

Q ss_pred             CccCcHHHHHHHHhhHhC-CCCCCeEEE--ecCcccCCCcchhhcccccCCceEE
Q 026933           94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        94 ~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d~~~l~~~~i~~~~~i~l  145 (230)
                      +++.||.+||..|++..+ +++++|+|.  +.|+.|.|+.+|.+||+.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            578899999999999986 689999996  7899999999999999999998765

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.54  E-value=3.1e-07  Score=60.49  Aligned_cols=69  Identities=29%  Similarity=0.434  Sum_probs=42.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---ccc--cCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~~l--~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |-|.|++.+| .+.+++++++|+.+|+++|++.+++|.+.|.|+.+.   ..+  +++.+|+++||..|+-+++.
T Consensus         5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            5577777765 566789999999999999999999999999987542   344  45799999999999998774

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=2.6e-08  Score=60.70  Aligned_cols=69  Identities=26%  Similarity=0.390  Sum_probs=62.2

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      +.+...-|+...+.+++++||.++|+.|+..+|..++...|-.++...+|.-+|++|.|.+|..+.+..
T Consensus         4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lelyy   72 (73)
T KOG3493|consen    4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELYY   72 (73)
T ss_pred             ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEee
Confidence            344555688999999999999999999999999999999998888999999999999999999988754

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.50  E-value=5.6e-07  Score=55.78  Aligned_cols=67  Identities=46%  Similarity=0.666  Sum_probs=60.5

Q ss_pred             EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      |+..+|....+.+.+++|+.++|.++...+|+++..|.|+++|..+.+...+.++++..++++++..
T Consensus         2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            3445788999999999999999999999999999999999999999998888899999999988763

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=98.47  E-value=2.6e-07  Score=61.03  Aligned_cols=64  Identities=30%  Similarity=0.447  Sum_probs=55.6

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cC-ccccCCccccccccccC
Q 026933            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g-~~l~d~~~l~~~~i~~~   64 (230)
                      |.+|++....+ ++.++..++.||.|||++++....-|++.|+|+. .. +.|+|.+||+++|..+.
T Consensus         1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~   67 (110)
T KOG4495|consen    1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQ   67 (110)
T ss_pred             CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccccc
Confidence            67788776555 6789999999999999999999999999999996 43 88999999999997643

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.45  E-value=1.2e-06  Score=55.24  Aligned_cols=70  Identities=27%  Similarity=0.372  Sum_probs=60.9

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC-----cccCCCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-----~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      ++|+|+......+.+.|+|..+|..+|++|....+++- .|+|.|..     +.|.+..+|++|||-.+..|.++.
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle   75 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE   75 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence            46888888889999999999999999999999999888 89999852     567899999999998877776654

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=3.1e-06  Score=56.81  Aligned_cols=77  Identities=17%  Similarity=0.419  Sum_probs=70.4

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +.+.|....+....+.+..++....|++.-+++-|++.+..+++|+|+.+.+..|-++++.++|+.|.+..-+.||.
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~   97 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF   97 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence            45566666677889999999999999999999999999999999999999999999999999999999999888875

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.39  E-value=1.4e-06  Score=53.86  Aligned_cols=63  Identities=46%  Similarity=0.693  Sum_probs=57.9

Q ss_pred             cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      .++....+.+.++.|++++|..++++++++++.+.|.++|..+.+...+.++++.+++.+++.
T Consensus         5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   67 (69)
T cd00196           5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLV   67 (69)
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence            367788889999999999999999999999999999999999999888889999999998775

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=3.6e-06  Score=56.47  Aligned_cols=79  Identities=16%  Similarity=0.428  Sum_probs=72.2

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ..+++.|+..++....+.+..+++...|+...+++.|++.+..|++|+|+.+.+..|-.+.+..+|+.|.++....+|.
T Consensus        19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~   97 (99)
T KOG1769|consen   19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF   97 (99)
T ss_pred             ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence            4567778887888889999999999999999999999999999999999999999999999999999999998777664

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=6.3e-07  Score=54.71  Aligned_cols=69  Identities=26%  Similarity=0.398  Sum_probs=60.7

Q ss_pred             eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      .+.++..-|+...+.+.+++||+++|..|+..+|-.++.+.|--.+...+|.-+|++|.+.+|-.+.+.
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            455666678999999999999999999999999999999988877788899999999999999877654

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=2.4e-06  Score=68.81  Aligned_cols=63  Identities=33%  Similarity=0.651  Sum_probs=57.9

Q ss_pred             cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE-EEe
Q 026933           87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL  149 (230)
Q Consensus        87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~-~~~  149 (230)
                      ..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|.++.++..+.+...+.++++ +|+
T Consensus        14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            457889999999999999999999999999999999999999999999999999988887 444

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=7.1e-06  Score=69.72  Aligned_cols=67  Identities=22%  Similarity=0.398  Sum_probs=62.5

Q ss_pred             ccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            7 TLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         7 ~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      -+.|+.++++ ++.++|+..+|.++...+|+||++|++.++|..+.|+..+...+|+++.++++.-..
T Consensus         9 KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen    9 KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             eecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence            4679999988 999999999999999999999999999999999999999999999999999998543

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=6.6e-06  Score=66.39  Aligned_cols=73  Identities=32%  Similarity=0.604  Sum_probs=64.3

Q ss_pred             CEEEEEcc---CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE-EEe
Q 026933            1 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL   73 (230)
Q Consensus         1 m~v~v~~~---~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~-~~~   73 (230)
                      |.|.|+..   ....++++|+.+.+|.+||+-+....|+|+++-+.+|.|++|+++.++..+.+...+.+|++ ++|
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            66777654   23578899999999999999999999999999999999999999999999999999988887 444

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=98.07  E-value=1.1e-05  Score=50.61  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=47.2

Q ss_pred             eecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026933          159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       159 ~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l  221 (230)
                      ..+++...+.+.++.++.++-++.++++|++++.+.|.|+++.++-+.+++-.|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            346788999999999999999999999999999999999999999999999999999999875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.85  E-value=2.6e-05  Score=51.70  Aligned_cols=55  Identities=29%  Similarity=0.385  Sum_probs=48.0

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cC-cccCCCcchhhccccc
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQK  139 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g-~~L~d~~~l~~~~i~~  139 (230)
                      +..++.++.+++.||.+||.+++....-|+++|+|.- .. +.|+|.++|+++|...
T Consensus        10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts   66 (110)
T KOG4495|consen   10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTS   66 (110)
T ss_pred             cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccc
Confidence            4456788999999999999999999999999999985 33 7889999999998754

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.83  E-value=7.6e-05  Score=46.88  Aligned_cols=63  Identities=19%  Similarity=0.252  Sum_probs=46.8

Q ss_pred             ccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEE
Q 026933           83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        83 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l  145 (230)
                      ..+++++.+.+.++.++.++-+..+++++++++...|.|+++.++-+.++.-.|+.+|+.+.+
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            467889999999999999999999999999999999999999999999999999999998754

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=8.8e-05  Score=63.24  Aligned_cols=66  Identities=23%  Similarity=0.403  Sum_probs=61.0

Q ss_pred             ecCceEEEE-eeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933          160 LTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       160 ~~~~~~~~~-v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      +.|+.++++ ++.++|+..||.++...+|++|++|++++.|..+.|+..+...+|++|.+++++-..
T Consensus        10 W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen   10 WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence            478889988 999999999999999999999999999999999999888999999999999987653

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.63  E-value=0.00023  Score=46.83  Aligned_cols=68  Identities=22%  Similarity=0.408  Sum_probs=48.1

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCce------eEE-ecCccccCCccccccccccCCeEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ------RLI-FAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q------~l~-~~g~~l~d~~~l~~~~i~~~~~i~l   69 (230)
                      +|+|..-+|+.+.+.++.+.||.+|...+-+..+.+....      .|. -+|..|+++.+|+++|+.+|+.+.+
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            5677665578999999999999999999999999764332      233 4588999999999999999999876

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=6.3e-05  Score=49.28  Aligned_cols=77  Identities=17%  Similarity=0.382  Sum_probs=69.5

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +.+.+...++.++-+.+.-+.+...|....+.+-|-..+..+++|+|+..+.++|..+++.++|+.|..+..+.||.
T Consensus        25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~  101 (103)
T COG5227          25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA  101 (103)
T ss_pred             cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence            44555666788899999999999999999999999999999999999999999999999999999999888888875

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.52  E-value=0.00029  Score=46.35  Aligned_cols=67  Identities=22%  Similarity=0.376  Sum_probs=47.5

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCC---C---ceEEE-ECCeecCCCCcccccCCCCCCEEEE
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---D---QQRLI-FAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~---~---~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~l  221 (230)
                      +.+...+++.+.+.++.+.+|++|...+.+..+.+.   .   .+.|. -+|..|+++.+|+++||.+|+.+.+
T Consensus         5 Vtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    5 VTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            344443467899999999999999999999887532   2   35665 6788999999999999999999976

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.46  E-value=0.0013  Score=43.48  Aligned_cols=69  Identities=23%  Similarity=0.364  Sum_probs=57.9

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEE--ECCeecCCC--CcccccCCCCCCEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~--~~g~~L~d~--~~L~~~~i~~g~~i~l  221 (230)
                      ..+.++.++|+.+.-.+..++|+.+|..-|......+... +.|+  |..+.+.+.  +||.+.|+.++++|.+
T Consensus         7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            4677888899999999999999999999999987766664 8886  566777433  7999999999999976

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.43  E-value=0.0012  Score=49.00  Aligned_cols=62  Identities=23%  Similarity=0.415  Sum_probs=48.9

Q ss_pred             CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCce-eEEec-Cccc--cCCccccccccc
Q 026933            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQ   62 (230)
Q Consensus         1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q-~l~~~-g~~l--~d~~~l~~~~i~   62 (230)
                      |+|+|.+++|    .++.+.+++++||.+|+..|....++|...| .|++. ++.+  .++..++++.-.
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~   70 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSS   70 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccC
Confidence            7899999999    5899999999999999999999999999885 45553 4555  344555555433

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.41  E-value=0.0013  Score=43.26  Aligned_cols=70  Identities=21%  Similarity=0.243  Sum_probs=57.2

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccCC---CcchhhcccccCCceEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  145 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~~l~~~~i~~~~~i~l  145 (230)
                      ..+|.|+..+|..+.-.++.++|+.++.+-+....+.+.....|.  |..+.+.+   +.||.+.|+.+++++.+
T Consensus         4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            356888999999999999999999999999976666666778886  56677753   57999999988887754

Present in FAF1 and Shp1p.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.31  E-value=0.0013  Score=43.27  Aligned_cols=69  Identities=22%  Similarity=0.251  Sum_probs=56.8

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d---~~~L~~~~i~~g~~i~l  221 (230)
                      ..|.++.++|+.+...+++++|++++.+-|....+.....+.|+  |..+.+.+   ++||.+.|+.+++++.+
T Consensus         5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            45778889999999999999999999999966666666778887  55666743   57999999999998865

Present in FAF1 and Shp1p.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.28  E-value=0.0025  Score=42.05  Aligned_cols=69  Identities=23%  Similarity=0.347  Sum_probs=57.5

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEE--ecCccccCC--ccccccccccCCeEEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~--~~g~~l~d~--~~l~~~~i~~~~~i~l~   70 (230)
                      +|.|+..+|..+.-...+++||.+|...|......+... -.|.  |..+.+.+.  .||++.|+.+++++++.
T Consensus         8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            688999999999999999999999999999998887764 3454  555666654  69999999999988763

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=97.27  E-value=0.00088  Score=45.71  Aligned_cols=48  Identities=25%  Similarity=0.403  Sum_probs=39.0

Q ss_pred             EeeccC--ccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcc
Q 026933           89 ITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN  136 (230)
Q Consensus        89 ~~~~v~--~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~  136 (230)
                      +.++++  .+.||..||+.|.+..+  ..-.+++|+|+|+.|.|...|...-
T Consensus        14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l   65 (97)
T PF10302_consen   14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL   65 (97)
T ss_pred             ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence            556555  78899999999999984  4455789999999999988877653

They contain a characteristic GFDRL sequence motif.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.27  E-value=0.0017  Score=48.17  Aligned_cols=76  Identities=30%  Similarity=0.523  Sum_probs=56.8

Q ss_pred             eeEEEeeecC----ceEEEEeeccccHHHHHHHhchhcCCCCCce-EEEE-CCeec--CCCCcccccCCCCC----CEEE
Q 026933          153 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF-AGKQL--EDGRTLADYNIQKE----STLH  220 (230)
Q Consensus       153 ~~i~v~~~~~----~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~-~L~~-~g~~L--~d~~~L~~~~i~~g----~~i~  220 (230)
                      ++++|.+.+|    .++.+.++++.||.+|+..+....+++...+ .|.. .+..+  .++..+..+.-.+.    -+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            4578888888    5788999999999999999999999988874 4443 34444  45666666655444    3678


Q ss_pred             EEEEecCC
Q 026933          221 LVLRLRGG  228 (230)
Q Consensus       221 l~~~~~~g  228 (230)
                      +..++.||
T Consensus        81 l~~rl~GG   88 (162)
T PF13019_consen   81 LSLRLRGG   88 (162)
T ss_pred             EEEeccCC
Confidence            88888886

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00032  Score=46.03  Aligned_cols=75  Identities=15%  Similarity=0.329  Sum_probs=66.5

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ..+.+.|...++..+-+.+..++|...|....+.+.|-..+..|+.|+|+.++.++|..+.+..+++.|.++...
T Consensus        23 ~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQ   97 (103)
T COG5227          23 KHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQ   97 (103)
T ss_pred             cccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHH
Confidence            356677777888999999999999999999999999999999999999999999999999999999987665433

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=97.11  E-value=0.0039  Score=40.94  Aligned_cols=68  Identities=15%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCccccC---CccccccccccCCeEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLED---GRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~l~d---~~~l~~~~i~~~~~i~l   69 (230)
                      +|.|+..+|....-..+.++|+.+|...|....+-+....... |..+.+.+   +.||.+.|+.+..++.+
T Consensus         6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            5789999999999999999999999999998765443333322 56677753   58999999998888765

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=97.08  E-value=0.0038  Score=40.95  Aligned_cols=68  Identities=16%  Similarity=0.317  Sum_probs=55.7

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~d---~~~L~~~~i~~g~~i~l  221 (230)
                      ..+.++.++|+.+.-.++.++|++++.+-|....+-. ..+.|+  |..+.+.+   ++||.+.|+.+.+++.|
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            4577888899999999999999999999998775433 557777  67777753   58999999999999876

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=97.06  E-value=0.0045  Score=40.62  Aligned_cols=66  Identities=23%  Similarity=0.308  Sum_probs=53.2

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCC-CCCCeEEE--ecCcccCC-CcchhhcccccCC
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKES  141 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~  141 (230)
                      ..+|.|+..+|+.+.-.++.++||++|.+-|....+- ......|.  |..+.+.| +.||++.|+.+..
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~   73 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV   73 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence            4578899999999999999999999999999987643 23556776  66787754 7899999998643

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=96.99  E-value=0.007  Score=39.83  Aligned_cols=70  Identities=16%  Similarity=0.316  Sum_probs=58.9

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l~  146 (230)
                      .-+|.|+.++|+...-.+..++++.+|-..+.. .|.+++...|+  |-.+.+.   .+.||++.|+.+.+++.|-
T Consensus         5 ~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           5 KARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            347889999999999999999999999999988 57888999988  5566663   3579999999999988664

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=96.99  E-value=0.007  Score=39.44  Aligned_cols=63  Identities=17%  Similarity=0.282  Sum_probs=49.4

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ecCccccC---CccccccccccC
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLED---GRTLADYNIQKE   64 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~g~~l~d---~~~l~~~~i~~~   64 (230)
                      +|.|+..+|..+.-..+.++||.+|...|.....-+.....+. |..+.+.+   +.||.+.|+.++
T Consensus         4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s   70 (77)
T cd01767           4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE   70 (77)
T ss_pred             EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence            5789999999999999999999999999998765433333322 55677754   799999999943

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=96.98  E-value=0.0074  Score=39.31  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=51.1

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCC
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKES  141 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~  141 (230)
                      ..|.|+..+|+.+.-.++.++|+.+|..-|.....- .....|.  |..+.+.   .+.||++.|+.+..
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~   71 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV   71 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence            468889999999999999999999999999876543 5556776  5567774   48899999999533

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=96.96  E-value=0.0078  Score=40.07  Aligned_cols=69  Identities=12%  Similarity=0.187  Sum_probs=55.4

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe--cCcccC--------CCcchhhcccccCCceEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--------DGRTLADYNIQKESTLHL  145 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~--------d~~~l~~~~i~~~~~i~l  145 (230)
                      ..+|.++.++|+.+.-.+..++|+++|..-|.. .+..+....|+.  ..+.+.        .+.||++.|+.+..++.|
T Consensus         4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V   82 (85)
T cd01774           4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV   82 (85)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence            467888999999999999999999999999964 455667888874  346674        367999999998776654

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=96.92  E-value=0.0068  Score=39.89  Aligned_cols=70  Identities=16%  Similarity=0.320  Sum_probs=59.4

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      -.+.++.++|+...-....++++++|..-+.. .|.+++.+.|+  |-.+.+   +.+.||.+.|+.+.+++.+--
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~   80 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE   80 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence            35788899999999999999999999999998 57888999998  656666   345899999999999998753

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=96.88  E-value=0.011  Score=38.91  Aligned_cols=71  Identities=20%  Similarity=0.280  Sum_probs=58.5

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEEE
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l~  146 (230)
                      +..+|.++.++|..+.-.+..++++.+|-.-+... |.++...+|+  |--+.+.   .+.||.+.|+.+..++.|-
T Consensus         3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            34578889999999999999999999999999875 7777888887  6667663   3679999999988887653

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.87  E-value=0.0022  Score=49.07  Aligned_cols=64  Identities=28%  Similarity=0.428  Sum_probs=57.7

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      .++.+.+.+...+|+.++|.++.+..|+.+..|+++|+|+.+-|...|.+++|..+.+..+.+.
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi  218 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI  218 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence            3667788889999999999999999999999999999999999999999999999987666543

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=96.87  E-value=0.0074  Score=39.58  Aligned_cols=64  Identities=23%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCC-CCceeEE--ecCccccC-CccccccccccCC
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKES   65 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip-~~~q~l~--~~g~~l~d-~~~l~~~~i~~~~   65 (230)
                      +|-|+..+|..+...++.++||.+|...|....+-+ ...-.|.  |-.+.+.+ +.||.+.|+.+..
T Consensus         6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~   73 (79)
T cd01770           6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV   73 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence            588999999999999999999999999999876433 1223443  66777766 6899999998543

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=96.85  E-value=0.0086  Score=39.36  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=58.5

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~  222 (230)
                      ...+.++.++|+...-....++++++|..-|... |.++..+.|+  |-.+.+   +.+.||.+.|+.+..++.|-
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve   78 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE   78 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence            3567888899999999999999999999999876 7778889998  666666   34679999999999998763

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=96.81  E-value=0.0026  Score=50.02  Aligned_cols=69  Identities=28%  Similarity=0.406  Sum_probs=53.9

Q ss_pred             CEEEEEccCCc-EEE-EEecCCCcHHHHHHHh-hhhhCCCCCceeEEe----cCccccCCccccccccccCCeEEE
Q 026933            1 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKI-QDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~-~~~-~~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~----~g~~l~d~~~l~~~~i~~~~~i~l   69 (230)
                      |.|++...+++ ... ...+..+|++|++.++ .+...+.+..+|+.+    +|+.+-|+.+|++|+..++.++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            78999888763 333 6778889999999554 555778887776664    489999999999999999977655

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=96.79  E-value=0.011  Score=46.59  Aligned_cols=101  Identities=21%  Similarity=0.296  Sum_probs=56.5

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCC---ceeEE--ecC---ccccCCccccccccccCCeEEEEEEec---------
Q 026933           12 TITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLR---------   74 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~---~q~l~--~~g---~~l~d~~~l~~~~i~~~~~i~l~~~~~---------   74 (230)
                      .+.+.|+.+.||+||-.++....+++.+   .-+++  +++   +.+..+..+.+.  .+...+.+-.-+.         
T Consensus        35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~  112 (213)
T PF14533_consen   35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES  112 (213)
T ss_dssp             EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence            5789999999999999999999999875   33433  344   345666667655  2222333321121         


Q ss_pred             -CCeeeEEEcc-------CCcEEeeccCccCcHHHHHHHHhhHhCCCC
Q 026933           75 -GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP  114 (230)
Q Consensus        75 -~~~~v~v~~~-------~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~  114 (230)
                       +.+.|.|...       .|-+|.+.|.+.+|.+++|++|+++.|++-
T Consensus       113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~  160 (213)
T PF14533_consen  113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD  160 (213)
T ss_dssp             -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred             ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence             1233444322       367788999999999999999999999874

>PRK06437 hypothetical protein; Provisional

Probab=96.61  E-value=0.023  Score=35.98  Aligned_cols=63  Identities=19%  Similarity=0.394  Sum_probs=48.0

Q ss_pred             EeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ++...++...++++...|+++|-+.+    |+++....+..+|....     .++-+++|+.|.++- ..|||
T Consensus         5 ~~v~g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~-~V~GG   67 (67)
T PRK06437          5 IRVKGHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE-VFSGG   67 (67)
T ss_pred             EEecCCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEe-cccCC
Confidence            34445566788888889999887554    78888888889999887     566789999998776 44444

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.56  E-value=0.01  Score=37.63  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCC--C---CCCeEEEecCcccCCCcchhhcccccCCceEE
Q 026933           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--P---PDQQRLIFAGKQLEDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i--~---~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l  145 (230)
                      ++-++..+|.++.+.++...++..|-..+.+...+  +   -+.++..-.++.|.++..|.+|+|.+|+.+.+
T Consensus         8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            45556678999999999999999988888777653  2   23467778899999999999999999997754

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.52  E-value=0.006  Score=41.63  Aligned_cols=49  Identities=24%  Similarity=0.394  Sum_probs=38.8

Q ss_pred             eEEEEee--ccccHHHHHHHhchhcC--CCCCceEEEECCeecCCCCcccccC
Q 026933          164 TITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN  212 (230)
Q Consensus       164 ~~~~~v~--~~~tV~~LK~~i~~~~g--i~~~~~~L~~~g~~L~d~~~L~~~~  212 (230)
                      ..++++.  .+.||..||.+|.+..+  ..-.+++|+|.|+.|.|+..|..--
T Consensus        13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l   65 (97)
T PF10302_consen   13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL   65 (97)
T ss_pred             CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence            3566666  78899999999999984  3345789999999999988776553

They contain a characteristic GFDRL sequence motif.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=96.39  E-value=0.029  Score=37.35  Aligned_cols=67  Identities=13%  Similarity=0.239  Sum_probs=52.9

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc--------CCccccccccccCCeEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--------DGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l~--------d~~~l~~~~i~~~~~i~l   69 (230)
                      +|-|+..+|....-....++||.+|...|... +-.+..-.|.  |--+.+.        .+.||.+.|+.+...+.+
T Consensus         6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V   82 (85)
T cd01774           6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV   82 (85)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence            68899999999999999999999999999754 4445555555  4456664        368999999998777654

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=96.17  E-value=0.014  Score=46.09  Aligned_cols=69  Identities=29%  Similarity=0.400  Sum_probs=49.1

Q ss_pred             eeeEEEccCC-cEEe-eccCccCcHHHHHHHHhhHh-CCCCCCeEEE----ecCcccCCCcchhhcccccCCceEE
Q 026933           77 MQIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        77 ~~v~v~~~~g-~~~~-~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~----~~g~~L~d~~~l~~~~i~~~~~i~l  145 (230)
                      |.|++...++ .... ...+..+|++|++.++.++. .+.+.++++.    -.|+.+-|+.+|++|+..+|+++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            4566655544 2333 56777889999997776654 5777555544    4689999999999999999976644

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.0096  Score=45.71  Aligned_cols=63  Identities=29%  Similarity=0.448  Sum_probs=56.4

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      .++.+.+.+...+|+.++|..+.+..|+++--|+++++|..+-|...|.+++++.|+...+-.
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv  217 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV  217 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence            456688888899999999999999999999999999999999999999999999997666544

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=96.06  E-value=0.065  Score=42.18  Aligned_cols=102  Identities=22%  Similarity=0.316  Sum_probs=57.1

Q ss_pred             cEEeeccCccCcHHHHHHHHhhHhCCCCC---CeEEE--ecCc---ccCCCcchhhcccccCCceEEEEE------ee--
Q 026933           87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLR------LR--  150 (230)
Q Consensus        87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~---~q~L~--~~g~---~L~d~~~l~~~~i~~~~~i~l~~~------~~--  150 (230)
                      +.+.+-++.+.||++|...++++.+++.+   ..++.  ++++   .+..+.++.+.  .+...+.+-.-      ..  
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            45788999999999999999999998765   45554  4553   46677777775  23223322211      11  


Q ss_pred             --cceeEEEeee-------cCceEEEEeeccccHHHHHHHhchhcCCCC
Q 026933          151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP  190 (230)
Q Consensus       151 --~~~~i~v~~~-------~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~  190 (230)
                        +...+.|...       .|-.+.+.+.+..|+.++|++|++++|++.
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~  160 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD  160 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence              1233333332       255688899999999999999999999863

>COG5417 Uncharacterized small protein [Function unknown]

Probab=95.92  E-value=0.072  Score=33.88  Aligned_cols=67  Identities=18%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcC--CCC-C--ceEEEECCeecCCCCcccccCCCCCCEEEE
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPP-D--QQRLIFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~g--i~~-~--~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l  221 (230)
                      +-.+...|.++.+.++...++..|-..+.+...  +++ +  .++..-+++.|.++..|.+|+|.+|+.+.+
T Consensus         9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            344566789999999999998888777666543  333 2  356668889999999999999999999865

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=95.90  E-value=0.097  Score=42.25  Aligned_cols=107  Identities=17%  Similarity=0.349  Sum_probs=72.0

Q ss_pred             eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC------cccCCCcchhhcccccCCceEEEEEeec------------
Q 026933           90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------  151 (230)
Q Consensus        90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~d~~~l~~~~i~~~~~i~l~~~~~~------------  151 (230)
                      .+-|+.+++|+++-..|.+..|+|++.--++|.-      ..++...++....+.+|+.|.+-.....            
T Consensus        88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~  167 (249)
T PF12436_consen   88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK  167 (249)
T ss_dssp             EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred             EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence            3567888999999999999999999877666642      4467899999999999998866553321            


Q ss_pred             --------ceeEEEeee---cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933          152 --------GMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  196 (230)
Q Consensus       152 --------~~~i~v~~~---~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~  196 (230)
                              .+.+.++..   .+..+.+.++...|-.+|-++|+++.+++|...+|.
T Consensus       168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence                    034444432   234799999999999999999999999999999987

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=95.83  E-value=0.065  Score=34.91  Aligned_cols=68  Identities=25%  Similarity=0.368  Sum_probs=50.7

Q ss_pred             EeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEE----CC--eecCCCCcccccCCCCCCEEEEEEE
Q 026933          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AG--KQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~----~g--~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      |+.++|+..++++++++|+++|-++|+...|+.... +-|.+    .+  .-|+.+++|.++....+....+.+|
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr   75 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR   75 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence            456788899999999999999999999999986544 45556    22  3468889999998874444444444

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PRK06437 hypothetical protein; Provisional

Probab=95.46  E-value=0.15  Score=32.16  Aligned_cols=62  Identities=18%  Similarity=0.322  Sum_probs=48.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      |.-+++..+++...+++..+.||.+|=+.    .|+++..-....||..+.     .++-+++++++.++.
T Consensus         1 ~~~~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~   62 (67)
T PRK06437          1 MIAMIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE   62 (67)
T ss_pred             CcceEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence            44566666778899999999999998766    688887777778998887     556677888888764

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=0.057  Score=41.49  Aligned_cols=59  Identities=19%  Similarity=0.325  Sum_probs=50.0

Q ss_pred             EEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECC-----eec-CCCCcccccCCCCCCEEEEEE
Q 026933          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g-----~~L-~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      ...+.++..|++++|.+++..+|.+++.+.|. |.+     ..| +++..|..|...+|..||++=
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD   80 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID   80 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence            45567788999999999999999999999886 766     355 567899999999999998853

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.07  Score=41.02  Aligned_cols=61  Identities=18%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             EeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecC-----ccc-CCCcchhhcccccCCceEEEEEe
Q 026933           89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L-~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      .....+.+.|+++||.+++-.+|.+++.+.|. |.|     ..| +++..|..|...+|-.||++-..
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~   82 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN   82 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence            45567889999999999999999999999987 555     235 45778999999999988887543

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=95.26  E-value=0.09  Score=32.40  Aligned_cols=68  Identities=22%  Similarity=0.434  Sum_probs=51.2

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhc---CCCCCceEEE-ECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~---gi~~~~~~L~-~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +|+...++.+.+....-...+--+..   |-|+++..|- -.|..++-++.+.+||+.+|-++++.++.--|
T Consensus         4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAGva   75 (76)
T PF10790_consen    4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAGVA   75 (76)
T ss_pred             CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecccC
Confidence            46666777776665555555444444   4688888887 78899999999999999999999999885443

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=95.23  E-value=0.04  Score=35.82  Aligned_cols=58  Identities=22%  Similarity=0.296  Sum_probs=48.2

Q ss_pred             eeccccHHHHHHHhchhcC-CCCCceEEEECCeecCCCCccccc-CCCCCCEEEEEEEec
Q 026933          169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRLR  226 (230)
Q Consensus       169 v~~~~tV~~LK~~i~~~~g-i~~~~~~L~~~g~~L~d~~~L~~~-~i~~g~~i~l~~~~~  226 (230)
                      |+++++|.++++.+..... -....+.|.++|..|+|...|++. |+++|+.+.+..++.
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY   60 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY   60 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence            4678999999999988754 355678889999999999999888 589999999886653

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=95.12  E-value=0.17  Score=33.14  Aligned_cols=61  Identities=20%  Similarity=0.343  Sum_probs=43.4

Q ss_pred             EEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      +...++-...+..||+.++.+.++..+.+.++..+..|+++++|-+.||+-...+.+.+..
T Consensus         5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi   65 (88)
T PF11620_consen    5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI   65 (88)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred             EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence            4555666778999999999999999999999888877999999999999998888887654

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=94.95  E-value=0.12  Score=33.72  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=35.0

Q ss_pred             EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcc
Q 026933           88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ  125 (230)
Q Consensus        88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~  125 (230)
                      ++.+.+++..+.++|..+|.++.++|++...|.|....
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~   49 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA   49 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence            88999999999999999999999999999999997643

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=94.81  E-value=0.064  Score=34.84  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=45.6

Q ss_pred             cCccCcHHHHHHHHhhHhC-CCCCCeEEEecCcccCCCcchhhcc-cccCCceEEEEEe
Q 026933           93 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRL  149 (230)
Q Consensus        93 v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~~L~d~~~l~~~~-i~~~~~i~l~~~~  149 (230)
                      |.++++|.++++.+..... ..-....|.++|+.|++...+++.. +++++++.++.++
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence            5678999999999988765 4556788999999999988888774 7778877776544

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=94.76  E-value=0.17  Score=33.40  Aligned_cols=45  Identities=13%  Similarity=0.174  Sum_probs=35.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC-CceeEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA   46 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-~~q~l~~~   46 (230)
                      |+|.+ +.+|....+.+.++++..+|+++|.+.+++.. ..-.|.|.
T Consensus         1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~   46 (82)
T cd06407           1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL   46 (82)
T ss_pred             CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence            44555 45788999999999999999999999999975 34455554

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=94.62  E-value=0.17  Score=40.82  Aligned_cols=106  Identities=17%  Similarity=0.357  Sum_probs=74.8

Q ss_pred             EEecCCCcHHHHHHHhhhhhCCCCCceeEEecC------ccccCCccccccccccCCeEEEEEEec--------------
Q 026933           15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLR--------------   74 (230)
Q Consensus        15 ~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g------~~l~d~~~l~~~~i~~~~~i~l~~~~~--------------   74 (230)
                      +-|+..++|.++=..|.+..|.|++...++|.-      ..++...++....+.+|+-|..-....              
T Consensus        89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~  168 (249)
T PF12436_consen   89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE  168 (249)
T ss_dssp             EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred             EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence            678999999999999999999999888877753      457788999999999999887776442              


Q ss_pred             ------CCeeeEEEcc---CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE
Q 026933           75 ------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  120 (230)
Q Consensus        75 ------~~~~v~v~~~---~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~  120 (230)
                            ..+.|.++..   .+..|.+.++...|-.+|-++|+++.+++|...+|+
T Consensus       169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence                  1255666542   345799999999999999999999999999999987

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=94.34  E-value=0.35  Score=31.36  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=47.0

Q ss_pred             EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceeEEe--c--C--ccccCCccccccccccCCe
Q 026933            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--A--G--KQLEDGRTLADYNIQKEST   66 (230)
Q Consensus         5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~-~q~l~~--~--g--~~l~d~~~l~~~~i~~~~~   66 (230)
                      |..++|...++++++++|+.++=.+|.+..|+... .--|.+  .  |  .=|+.+++|.++.......
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~   69 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP   69 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence            56789999999999999999999999999999843 345666  1  2  2267788888887663333

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=94.22  E-value=0.16  Score=33.75  Aligned_cols=44  Identities=14%  Similarity=0.280  Sum_probs=37.8

Q ss_pred             eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC---CCeEEEec
Q 026933           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA  122 (230)
Q Consensus        79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~~~  122 (230)
                      +.++..+|+.+.+.+.++..+.+|++.|.++.|+..   ....|.|-
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl   49 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV   49 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence            566788999999999999999999999999999886   45666663

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=94.04  E-value=0.029  Score=46.17  Aligned_cols=63  Identities=22%  Similarity=0.350  Sum_probs=48.4

Q ss_pred             CeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhC-C-CCCCeEEEecCcccCCCcchhhcccc
Q 026933           76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADYNIQ  138 (230)
Q Consensus        76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~-i-~~~~q~L~~~g~~L~d~~~l~~~~i~  138 (230)
                      .+.+.++..+.  +.+.+..+...||++||..++..+. - -..+|||+|.|+.|.|...++|.=.+
T Consensus         9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk   75 (391)
T KOG4583|consen    9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK   75 (391)
T ss_pred             ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence            34566666654  4467777888999999999998874 2 24569999999999999998886543

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=94.04  E-value=0.48  Score=31.56  Aligned_cols=65  Identities=20%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             ceEEEEeeccccHHHHHHHhchhcCCCCCceEEE-ECC----eec-CCCCcccccCCCCCCEEEEEEEecCC
Q 026933          163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG----KQL-EDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~-~~g----~~L-~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ..++..++..+||..+.+.+.+.+.+ +...+|- +..    ..| +.+.|+.+.|+.+|.+|.+-.|-.-|
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG   84 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG   84 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence            35778889999999999999999999 6667774 222    345 56689999999999999887776555

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=94.01  E-value=0.23  Score=32.26  Aligned_cols=60  Identities=13%  Similarity=0.243  Sum_probs=44.4

Q ss_pred             eEEEEeeccccHHHHHHHhchhcCC----CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~gi----~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...++++...|+.+|.+.+...++-    ......+..+|+...     .+.-+++||.|.++--..||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence            3566777788999999999988632    234566668888776     45679999999887766555

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=94.00  E-value=0.85  Score=28.95  Aligned_cols=56  Identities=13%  Similarity=0.238  Sum_probs=42.4

Q ss_pred             eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...+++++..|+.+|-+.+    ++++....+..+|.....     +.-+++||.|.++--..||
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG   70 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG   70 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence            5677788888999998666    667777777799988753     6668999999877644443

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=93.78  E-value=0.33  Score=31.85  Aligned_cols=61  Identities=20%  Similarity=0.328  Sum_probs=44.0

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      .....++=.+++..||..++.+.++.-+.-.++++...|+++++|.+-++..+..+.+.+.
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ   64 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ   64 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence            3456677889999999999999999999999999887799999999999999888877643

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=93.48  E-value=0.31  Score=31.79  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=34.1

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      ++.|+++++.+..+|..+|.++.++|++.-.|.|..
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd   47 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS   47 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence            899999999999999999999999999998999975

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=93.34  E-value=0.63  Score=31.02  Aligned_cols=63  Identities=19%  Similarity=0.206  Sum_probs=42.3

Q ss_pred             cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-c---C-ccc-CCCcchhhcccccCCceEEEEEee
Q 026933           87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-A---G-KQL-EDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~---g-~~L-~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      ..+...++..+||+.+...+.+.+.| ..+.||-- .   + ..| +.+.|+.+.|+.+|-.|.+-.+..
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~   82 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE   82 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence            35677789999999999999999999 66688752 1   2 235 446799999999998776655443

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=93.10  E-value=0.29  Score=31.69  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             EEeeccCccCcHHHHHHHHhhHhCC----CCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           88 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        88 ~~~~~v~~~~tV~~lK~~i~~~~~i----~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      ...++++...||.+|.+.+...++-    ......+..||+...     .+.-+++|+.|.++....|
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G   79 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG   79 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence            4667788889999999999988642    334566778888876     3456889999988755444

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=92.96  E-value=0.68  Score=28.85  Aligned_cols=58  Identities=19%  Similarity=0.346  Sum_probs=41.8

Q ss_pred             EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .++++...|+.+|.+.+.    +++....+..+|+....+ .-.+.-+++||.|.+.--..||
T Consensus         8 ~~~~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG   65 (65)
T cd00565           8 PREVEEGATLAELLEELG----LDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG   65 (65)
T ss_pred             EEEcCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence            345556789999887664    677778888999877643 3445679999999887755554

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=92.67  E-value=0.52  Score=31.32  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=34.0

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD   39 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~   39 (230)
                      ..++...|+++-+.+.|++.+.+|++.|.+++|+...
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~   39 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDF   39 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence            4678889999999999999999999999999999873

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=92.58  E-value=0.76  Score=30.28  Aligned_cols=41  Identities=12%  Similarity=0.151  Sum_probs=35.1

Q ss_pred             cCCcEEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEEecCc
Q 026933           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGK  124 (230)
Q Consensus        84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~  124 (230)
                      .+|..+.+.++++.+..+|++.|++++++.. ....|.|..-
T Consensus         7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dd   48 (82)
T cd06407           7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDD   48 (82)
T ss_pred             eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECC
Confidence            4677899999999999999999999999875 6788888653

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=92.51  E-value=1  Score=28.61  Aligned_cols=64  Identities=9%  Similarity=0.133  Sum_probs=44.2

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      |++.+.... ....++++...|+.+|-+.+    ++++....+..||.....     +.-+++|+.|.++....
T Consensus         5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~   68 (70)
T PRK08364          5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVS   68 (70)
T ss_pred             EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEcccc
Confidence            455553222 24567888889999988665    777777777789988854     45577899887764433

>smart00666 PB1 PB1 domain

Probab=92.45  E-value=0.66  Score=30.16  Aligned_cols=45  Identities=16%  Similarity=0.334  Sum_probs=37.0

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      +|.+.. +|.++.+.++++.|..+|+.+|.+.++.+.....|.|..
T Consensus         3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D   47 (81)
T smart00666        3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD   47 (81)
T ss_pred             cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence            344543 678999999999999999999999999987667777753

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=92.31  E-value=0.94  Score=28.13  Aligned_cols=57  Identities=19%  Similarity=0.369  Sum_probs=40.4

Q ss_pred             EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ++++...|+.+|.+.+    ++++....+..+|.....+ ...++-+++||.|.++--..||
T Consensus         8 ~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG   64 (64)
T TIGR01683         8 VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG   64 (64)
T ss_pred             EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence            3445667899988765    4667777777999887532 3456779999999887755444

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=92.20  E-value=0.7  Score=29.61  Aligned_cols=44  Identities=23%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC
Q 026933          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  199 (230)
Q Consensus       156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g  199 (230)
                      .|..++|+...+.+.+..|+.++-++++++.|+.++...+...|
T Consensus         3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            46678899999999999999999999999999999998887554

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=92.15  E-value=0.69  Score=28.58  Aligned_cols=65  Identities=23%  Similarity=0.489  Sum_probs=48.0

Q ss_pred             cCCcEEeeccCccCcHHHHHHHHhhHh---CCCCCCeEEE-ecCcccCCCcchhhcccccCCceEEEEE
Q 026933           84 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~---~i~~~~q~L~-~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      .+|+...++.+.+....-..++--+..   +-|++.-.|. -+|..++-++.+.|||+.++-++.+.++
T Consensus         3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK   71 (76)
T PF10790_consen    3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK   71 (76)
T ss_pred             eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence            367777888777776555555544444   4688877776 5788899899999999999987766554

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=92.13  E-value=0.52  Score=30.85  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=44.7

Q ss_pred             CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhC-CCC--CceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~g-ip~--~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|+|+...      | +...+++..+.||.+|.+.+...+. +..  ..-.+..|++...     .++-+.+++++.++
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~   76 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII   76 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence            678888654      4 5677888899999999999977651 111  1112446776653     34456778888776


Q ss_pred             EEe
Q 026933           71 LRL   73 (230)
Q Consensus        71 ~~~   73 (230)
                      ...
T Consensus        77 Ppv   79 (82)
T PLN02799         77 PPI   79 (82)
T ss_pred             CCC
Confidence            543

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=91.98  E-value=1.3  Score=27.60  Aligned_cols=60  Identities=15%  Similarity=0.317  Sum_probs=42.2

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +|+.+.+  + ..|+++|.+.+    ++++....+-.++.... .....+.-+++||.|.++--..||
T Consensus         6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488          6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence            4565665  3 35899988765    56666666778888876 345667789999999887655444

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=91.83  E-value=0.43  Score=40.38  Aligned_cols=68  Identities=19%  Similarity=0.284  Sum_probs=55.2

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC-CCCCCeEEE--ecCcccCC-CcchhhcccccCCc
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLED-GRTLADYNIQKEST  142 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~~  142 (230)
                      +.-.|.|+..+|..+...++.+.||.+++..|..... -+...+.|+  |-.++|.| +.||++.|+.+-..
T Consensus       304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl  375 (380)
T KOG2086|consen  304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL  375 (380)
T ss_pred             CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence            3467888999999999999999999999999998775 444467776  67788855 77999999987543

>smart00666 PB1 PB1 domain

Probab=91.54  E-value=0.99  Score=29.30  Aligned_cols=44  Identities=16%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      +.++. ++....+.++.+.|..+|+.+|+++++.+.....|.|..
T Consensus         4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D   47 (81)
T smart00666        4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD   47 (81)
T ss_pred             EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence            44443 667888999999999999999999999887788888875

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=91.52  E-value=1.1  Score=27.87  Aligned_cols=59  Identities=14%  Similarity=0.285  Sum_probs=40.6

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      +|+.+.+  + ..|+.+|...+    ++++....+-.|+..+. .....+.-+++|+.|.++-...|
T Consensus         6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~G   64 (65)
T PRK06488          6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQG   64 (65)
T ss_pred             CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccC
Confidence            5776666  3 35899988764    66666666778887775 33455677889999988754443

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=91.44  E-value=0.85  Score=27.73  Aligned_cols=54  Identities=19%  Similarity=0.300  Sum_probs=39.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|+|     +.-.+++..+.|..+||.++...      .-.+.++|-+..++..|.     +++++.+.
T Consensus         1 M~I~v-----N~k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~-----e~D~v~~I   54 (57)
T PF14453_consen    1 MKIKV-----NEKEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELK-----EGDEVFLI   54 (57)
T ss_pred             CEEEE-----CCEEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccC-----CCCEEEEE
Confidence            66776     45567888999999999997653      236789998887766654     45666554

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=91.24  E-value=0.79  Score=29.37  Aligned_cols=45  Identities=22%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      +.|-.++|..-.+.+.|+.||.|+=.++.+..|+.++.=.+++.|
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~   46 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG   46 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence            456678999999999999999999999999999999888888754

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>smart00455 RBD Raf-like Ras-binding domain

Probab=91.12  E-value=0.64  Score=29.62  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             EEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933           80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        80 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      .|..++|+...+.+.+..|+.++-..+.++.|+.++...++..|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            45578999999999999999999999999999999999888755

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=90.65  E-value=0.78  Score=41.93  Aligned_cols=45  Identities=22%  Similarity=0.441  Sum_probs=39.6

Q ss_pred             ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc
Q 026933            7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE   51 (230)
Q Consensus         7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~   51 (230)
                      +.++..+.+-++++.|+..++..|+..+|||.+.|.|+|.|....
T Consensus       321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h  365 (732)
T KOG4250|consen  321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH  365 (732)
T ss_pred             eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence            345778889999999999999999999999999999999875543

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=90.57  E-value=0.96  Score=41.39  Aligned_cols=178  Identities=19%  Similarity=0.258  Sum_probs=97.1

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--e--cCccc--cCCccccccccccCCeEEEEEE--e-cCC--eeeE
Q 026933           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--F--AGKQL--EDGRTLADYNIQKESTLHLVLR--L-RGG--MQIF   80 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~--~g~~l--~d~~~l~~~~i~~~~~i~l~~~--~-~~~--~~v~   80 (230)
                      .+.+.|+.-.+++.+|+.|++..++|.+.-+++  +  ||..+  .++.||+.  ..++.+|.+.+-  + .+.  ++|+
T Consensus       878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk~dE~~~KI~  955 (1203)
T KOG4598|consen  878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLKSDEKMMKII  955 (1203)
T ss_pred             heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCCCCceeeEEE
Confidence            566889999999999999999999998876665  2  22222  34566654  345555544431  1 122  3333


Q ss_pred             EE-cc-CCc-E----EeeccCccCcHHHHHHHHhhHhC--------CCCCCeEEEec-----Cccc-CCCcchhhcc---
Q 026933           81 VK-TL-TGK-T----ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFA-----GKQL-EDGRTLADYN---  136 (230)
Q Consensus        81 v~-~~-~g~-~----~~~~v~~~~tV~~lK~~i~~~~~--------i~~~~q~L~~~-----g~~L-~d~~~l~~~~---  136 (230)
                      .- .. +.+ .    +..-+..++|+++.|..+-....        +...+.|+...     |+.+ +++.++.|..   
T Consensus       956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen  956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred             eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence            32 11 111 1    23446788999998876554432        23333333322     2333 3344444433   


Q ss_pred             ---------------cccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE
Q 026933          137 ---------------IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI  196 (230)
Q Consensus       137 ---------------i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~  196 (230)
                                     -++++.+.+++|...+-.+.+.    .--++.++ .+.+.++++.+.+-.|||.++.-+.
T Consensus      1036 ~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~----pFQEV~Ld-~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVN----PFQEVLLD-ANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred             HHHHHHHHHHhhcccCCCCccchhhheeccccceecC----CceeEEec-CcchHHHHHHHHHhcCCchhhhhhh
Confidence                           1223333333333222211111    11122222 4568999999999999999987665

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=90.53  E-value=0.077  Score=43.51  Aligned_cols=58  Identities=21%  Similarity=0.449  Sum_probs=0.0

Q ss_pred             cccHHHHHHHhch----------hcCCCCCceE-----EEECCeecCCCCcccccCCC-------CCCEEEEEEEecCCC
Q 026933          172 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGGG  229 (230)
Q Consensus       172 ~~tV~~LK~~i~~----------~~gi~~~~~~-----L~~~g~~L~d~~~L~~~~i~-------~g~~i~l~~~~~~g~  229 (230)
                      +.+|.++|..++.          ..++|.+.++     |+|+-+.+-|+++|.+..-.       .+.++.+.+-..||+
T Consensus       103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa  182 (309)
T PF12754_consen  103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA  182 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence            5899999999999          7889999999     99999999899999888654       577777776666664

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=90.43  E-value=1.3  Score=28.30  Aligned_cols=63  Identities=14%  Similarity=0.249  Sum_probs=48.2

Q ss_pred             eEEEEeeccccHHHHHHHhchhcCC--CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...+.+....||.+|.+.+..++.-  ......+..+|+...+  .-.+.-+++||.|.++--..||
T Consensus        13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG   77 (77)
T PF02597_consen   13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG   77 (77)
T ss_dssp             EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred             CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence            5677788899999999999998631  2366778899988887  3666778999999886644444

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=90.40  E-value=0.11  Score=42.89  Aligned_cols=61  Identities=23%  Similarity=0.403  Sum_probs=45.8

Q ss_pred             ceeEEEeeecCc--eEEEEeeccccHHHHHHHhchhcC-CC-CCceEEEECCeecCCCCcccccC
Q 026933          152 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYN  212 (230)
Q Consensus       152 ~~~i~v~~~~~~--~~~~~v~~~~tV~~LK~~i~~~~g-i~-~~~~~L~~~g~~L~d~~~L~~~~  212 (230)
                      ++.++++..+.+  ..++..+...||++||..++..+- -| +..|+|+|.|+.|.|+..|.+.-
T Consensus         9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~l   73 (391)
T KOG4583|consen    9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWL   73 (391)
T ss_pred             ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHH
Confidence            345666666543  456666678899999999998873 23 35799999999999999887753

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=90.26  E-value=1.8  Score=28.76  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIP   37 (230)
Q Consensus         3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip   37 (230)
                      |.||.. +|.+..+.|+++.+..+|..+|.+.+++.
T Consensus         3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~   38 (86)
T cd06408           3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK   38 (86)
T ss_pred             EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            455554 79999999999999999999999999995

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>smart00455 RBD Raf-like Ras-binding domain

Probab=90.17  E-value=1.2  Score=28.36  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             EEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933            4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      .|-..+|+...+.+.|+.|+.|+=+++.++.|+.++.-.++..|
T Consensus         3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            45678999999999999999999999999999999888888755

>PRK07440 hypothetical protein; Provisional

Probab=89.95  E-value=2.1  Score=27.18  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=42.5

Q ss_pred             EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .++.+..|+.+|-+    ..++++....+-.++..+.- ....+.-+++||.|.++--..||
T Consensus        14 ~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG   70 (70)
T PRK07440         14 RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG   70 (70)
T ss_pred             EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence            55566788888765    44678888888899988863 35667779999999887755554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.81  E-value=0.69  Score=38.30  Aligned_cols=58  Identities=10%  Similarity=0.117  Sum_probs=47.2

Q ss_pred             EEEeeccccHHHHHHHhchhcCCCCCceEEEECC--------eecCCCCcccccCCCCCCEEEEEE
Q 026933          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--------KQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g--------~~L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      ...+.-.-||.++++.+..+.|+.+.+++|++-.        ..++.+++|.+|.|++|+.+.+--
T Consensus       351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvqe  416 (418)
T KOG2982|consen  351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQE  416 (418)
T ss_pred             ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeeec
Confidence            3445556799999999999999999999998632        345667899999999999987643

>smart00295 B41 Band 4

Probab=89.78  E-value=3.1  Score=31.94  Aligned_cols=73  Identities=27%  Similarity=0.359  Sum_probs=52.2

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEEC---C---eecCCCCcccccCCC-CCCEEEEEE
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLVL  223 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~---g---~~L~d~~~L~~~~i~-~g~~i~l~~  223 (230)
                      +..+.|...+|+...+.+++.+|++++.+.++.+.|++... +-|.+-   +   .-++...++.+...+ ....+++..
T Consensus         3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~   82 (207)
T smart00295        3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV   82 (207)
T ss_pred             cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence            45677888899999999999999999999999999996533 344421   1   245666777777665 344555554


Q ss_pred             E
Q 026933          224 R  224 (230)
Q Consensus       224 ~  224 (230)
                      |
T Consensus        83 r   83 (207)
T smart00295       83 K   83 (207)
T ss_pred             E
Confidence            4

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=89.64  E-value=3.8  Score=26.10  Aligned_cols=52  Identities=23%  Similarity=0.312  Sum_probs=38.6

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC--eecCCCC
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGR  206 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g--~~L~d~~  206 (230)
                      +.+..++++...+.+.+..|+.+.-..+.++.|+.++...++..|  +.++-+.
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~   56 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ   56 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence            456678899999999999999999999999999999988776444  3444333

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=89.50  E-value=2.4  Score=26.28  Aligned_cols=58  Identities=17%  Similarity=0.337  Sum_probs=41.6

Q ss_pred             EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .+++.+..|+.++-+.    .++++....+..+|....-+ .-.+.-+++||.|.++--..||
T Consensus         9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG   66 (66)
T PRK05659          9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG   66 (66)
T ss_pred             EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence            3455667788887654    47888888888998777643 3455668999999887755544

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=89.18  E-value=1.6  Score=28.45  Aligned_cols=61  Identities=16%  Similarity=0.230  Sum_probs=40.2

Q ss_pred             ceEEEEeeccccHHHHHHHhchhcC-CCC--CceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~i~~~~g-i~~--~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ....++++...|+++|.+.+..+.. +..  ....+..+++...     .+.-+++|+.|.+.--..||
T Consensus        19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG   82 (82)
T PLN02799         19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG   82 (82)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence            3466777788999999999977651 111  2234557777654     34568899999776644443

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=89.18  E-value=2.3  Score=28.16  Aligned_cols=61  Identities=13%  Similarity=0.248  Sum_probs=44.8

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +|+.+  ++++..|+.+|-+.    .++++....+-.+|..+. ....+++-+++||.|.++--..||
T Consensus        24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG   84 (84)
T PRK06083         24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG   84 (84)
T ss_pred             CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence            45444  44567788887664    467888888889998885 456778889999999887755544

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=89.12  E-value=2.1  Score=26.64  Aligned_cols=60  Identities=18%  Similarity=0.308  Sum_probs=40.9

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +|+.+  ++++..|+.+|-+.    .++++....+..++....-+ ..+.+ +++||.|.++--..||
T Consensus         6 NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~~VgGG   65 (65)
T PRK05863          6 NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVTAVQGG   65 (65)
T ss_pred             CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEeeccCC
Confidence            44444  44466788777654    47888889998999877533 23455 9999999887644443

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=89.06  E-value=2.6  Score=27.34  Aligned_cols=60  Identities=17%  Similarity=0.294  Sum_probs=42.3

Q ss_pred             eEEEEeecc-ccHHHHHHHhchhcC-C-C-CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          164 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~~~v~~~-~tV~~LK~~i~~~~g-i-~-~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...++++.. .|+.+|...+.++++ + . .....+..+++...+     +.-+++|+.|.+.--..||
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG   80 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence            356777766 899999999998864 1 1 133455677776663     5678999999877655554

The C-terminal Gly-Gly of this model is critical to function.

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=88.92  E-value=0.65  Score=38.93  Aligned_cols=64  Identities=20%  Similarity=0.321  Sum_probs=55.6

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCC--CcchhhcccccCCceEEEEE
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d--~~~l~~~~i~~~~~i~l~~~  148 (230)
                      ....+++.+..+-....|+..+....|++.+..-|+|+++++..  ...+..+|+..++.+.+--+
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k   76 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK   76 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence            55678888888889999999999999999999999999999865  46799999999998866544

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=88.87  E-value=2  Score=27.91  Aligned_cols=59  Identities=15%  Similarity=0.262  Sum_probs=41.4

Q ss_pred             EEeeccCcc-CcHHHHHHHHhhHhC-C-C-CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           88 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        88 ~~~~~v~~~-~tV~~lK~~i~~~~~-i-~-~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      ...++++.. .||.+|++.+.++++ + . .....+..|++...+     +.-+++|+.|.++....|
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG   79 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG   79 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence            356778776 899999999999874 1 1 133456678877764     456788999987754444

The C-terminal Gly-Gly of this model is critical to function.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=88.40  E-value=1.2  Score=28.53  Aligned_cols=62  Identities=13%  Similarity=0.228  Sum_probs=47.4

Q ss_pred             EEeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           88 TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        88 ~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      ...+.+....||.+|.+.+..+++  .......+..||+...+  .-.+.-+++|+.|.++....|
T Consensus        13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG   76 (77)
T PF02597_consen   13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG   76 (77)
T ss_dssp             EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred             CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence            556778889999999999988874  13356788899988877  355677889999988755444

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=88.19  E-value=0.15  Score=41.92  Aligned_cols=62  Identities=19%  Similarity=0.478  Sum_probs=0.0

Q ss_pred             eeeEEEccCCcEEeeccC---c--cCcHHHHHHHHhh----------HhCCCCCCeE-----EEecCcccCCCcchhhcc
Q 026933           77 MQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN  136 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~---~--~~tV~~lK~~i~~----------~~~i~~~~q~-----L~~~g~~L~d~~~l~~~~  136 (230)
                      +.|+++...+..+.+.+.   +  +.+|.++|..+++          ..++|.+.++     |.|+-+.+.|.++|.+..
T Consensus        79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l  158 (309)
T PF12754_consen   79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL  158 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence            556666655544444332   2  5789999999999          8889999999     999999999999998875


Q ss_pred             cc
Q 026933          137 IQ  138 (230)
Q Consensus       137 i~  138 (230)
                      -.
T Consensus       159 ~~  160 (309)
T PF12754_consen  159 AD  160 (309)
T ss_dssp             --
T ss_pred             hc
Confidence            43

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=88.04  E-value=4.2  Score=25.36  Aligned_cols=61  Identities=11%  Similarity=0.208  Sum_probs=41.4

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +|+.+  ++.+..|+.+|.+.+    +.+.....+-.++.... ...-++.-+++||.|.++--..||
T Consensus         6 Ng~~~--~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~~v~GG   66 (66)
T PRK08053          6 NDQPM--QCAAGQTVHELLEQL----NQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_pred             CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEEEccCC
Confidence            44444  445667899888653    45556677778998875 234556679999999887655444

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=87.77  E-value=4  Score=25.62  Aligned_cols=61  Identities=18%  Similarity=0.232  Sum_probs=42.7

Q ss_pred             cCceEEEEeecc-ccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          161 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~~~v~~~-~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +|+.+  +++.. .||.+|-+    ..++++....+-.++..+.- ....++-+++||.|.++--..||
T Consensus         6 NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~~VgGG   67 (67)
T PRK07696          6 NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVTFVGGG   67 (67)
T ss_pred             CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence            45544  44444 57887765    34778888888899988864 35667779999999887755544

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=87.64  E-value=1.9  Score=26.82  Aligned_cols=60  Identities=20%  Similarity=0.385  Sum_probs=41.6

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      +|+.+  +++...|+.+|...+    +++.....+..+|+....+ ...+.-+++|+.|.++....|
T Consensus         5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G   64 (65)
T cd00565           5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG   64 (65)
T ss_pred             CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence            45444  456678999988774    5778888888999877543 234456889999988755444

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=87.63  E-value=2.6  Score=25.61  Aligned_cols=46  Identities=13%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      .+++..+.|..+||..+...      .-.++++|-...++..     +++|+.|.+.
T Consensus         9 ~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~-----L~e~D~v~~I   54 (57)
T PF14453_consen    9 EIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIE-----LKEGDEVFLI   54 (57)
T ss_pred             EEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccc-----cCCCCEEEEE
Confidence            56778888999999886542      2367899988877644     5567777554

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=87.58  E-value=0.91  Score=38.08  Aligned_cols=74  Identities=20%  Similarity=0.301  Sum_probs=62.3

Q ss_pred             CEEEEEcc--CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC--ccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~--~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~--~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |.++|.+.  .-..+++++..+-....++..+...+|++.+.--+.|++..+.+.  .++.++|+..++.+.+.-+..
T Consensus         1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~   78 (380)
T KOG0012|consen    1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSS   78 (380)
T ss_pred             CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCC
Confidence            55666544  456788999999999999999999999999988999999888775  779999999999988775543

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=87.36  E-value=3.4  Score=27.45  Aligned_cols=52  Identities=17%  Similarity=0.258  Sum_probs=38.9

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcch
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  132 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l  132 (230)
                      ++|.+. .+|....+.++++.+..+|..+|.+++++. ....+.|...  .|-.|+
T Consensus         3 ikVKv~-~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti   54 (86)
T cd06408           3 IRVKVH-AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITM   54 (86)
T ss_pred             EEEEEE-ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccc
Confidence            444453 367788999999999999999999999985 5667767654  444343

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=87.19  E-value=2.9  Score=27.58  Aligned_cols=61  Identities=11%  Similarity=0.273  Sum_probs=41.5

Q ss_pred             eEEEEeeccccHHHHHHHhchhcCC------C-----CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~gi------~-----~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...++++ ..||.+|.+.+.+++.-      .     .....+..+|+..+.+..   .-+++|+.|.+.--..||
T Consensus        17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG   88 (88)
T TIGR01687        17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG   88 (88)
T ss_pred             eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence            4566665 78999999999888631      0     123556678876654321   568999999877755554

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=87.08  E-value=3.4  Score=27.29  Aligned_cols=61  Identities=11%  Similarity=0.255  Sum_probs=41.3

Q ss_pred             cEEeeccCccCcHHHHHHHHhhHhCC------C-----CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           87 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        87 ~~~~~~v~~~~tV~~lK~~i~~~~~i------~-----~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      ....++++ ..||.+|.+.+.++++-      .     .....+..||+....+..   ..+++|+.|.++....|
T Consensus        16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG   87 (88)
T TIGR01687        16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG   87 (88)
T ss_pred             ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence            34567776 88999999999888641      0     123556678877654421   56889999988755544

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=86.72  E-value=5.3  Score=24.81  Aligned_cols=57  Identities=12%  Similarity=0.206  Sum_probs=40.3

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      +|+.+.+  ++..|+.+|-..    .++++....+.+++..+..+. ...+ +++|+.|.++-..
T Consensus         6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~V   62 (65)
T PRK05863          6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAV   62 (65)
T ss_pred             CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeec
Confidence            5665544  567788887654    588999999999998775432 2345 8999999887543

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=86.47  E-value=5.3  Score=25.23  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=43.4

Q ss_pred             EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +++++...|+++|-.    ..|++++......+|.....+ .-.+.-+++||.|.++--..||
T Consensus        11 ~~e~~~~~tv~dLL~----~l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG   68 (68)
T COG2104          11 EVEIAEGTTVADLLA----QLGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG   68 (68)
T ss_pred             EEEcCCCCcHHHHHH----HhCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence            456666689998864    457888888888999888743 3566778999999887755554

>smart00295 B41 Band 4

Probab=86.41  E-value=6.6  Score=30.08  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCC
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP   38 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~   38 (230)
                      .+.|..++|.+..+.+++.+|+.++-..+....|++.
T Consensus         5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~   41 (207)
T smart00295        5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE   41 (207)
T ss_pred             EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence            4778889999999999999999999999999999964

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=86.00  E-value=3.4  Score=26.84  Aligned_cols=38  Identities=21%  Similarity=0.434  Sum_probs=32.0

Q ss_pred             CcEEe-eccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933           86 GKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        86 g~~~~-~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      +.... +.++.+.|..+|+.+|++.++.+.....|.|..
T Consensus        10 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D   48 (84)
T PF00564_consen   10 GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD   48 (84)
T ss_dssp             TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence            33444 888888899999999999999998888998864

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=85.94  E-value=4.2  Score=25.88  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=35.9

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      +.|-.++|....+.+.|+.||.|.=.++.+..|+.++.=.++..|
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~   47 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG   47 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            456668899999999999999999999999999999877766544

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=85.80  E-value=3.1  Score=28.31  Aligned_cols=40  Identities=18%  Similarity=0.249  Sum_probs=35.0

Q ss_pred             EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe
Q 026933            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF   45 (230)
Q Consensus         5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~   45 (230)
                      ++..+|++.-+.|+.+.|..+|+.++.+.++++.. ..|.|
T Consensus        17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky   56 (97)
T cd06410          17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY   56 (97)
T ss_pred             EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence            45678999999999999999999999999999876 55555

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=85.60  E-value=3.2  Score=25.68  Aligned_cols=60  Identities=18%  Similarity=0.337  Sum_probs=40.8

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      +|+.+  +++...|+.+|...    .++++....+..+|..+..+ ...++-+++|+.|.++....|
T Consensus         4 Ng~~~--~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~G   63 (64)
T TIGR01683         4 NGEPV--EVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGG   63 (64)
T ss_pred             CCeEE--EcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence            45544  44667789998876    45777777777888877432 234466889999988754443

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]

Probab=85.27  E-value=1.6  Score=36.99  Aligned_cols=67  Identities=19%  Similarity=0.317  Sum_probs=52.8

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEE--ECCeec-CCCCcccccCCCCCCEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FAGKQL-EDGRTLADYNIQKESTL  219 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~--~~g~~L-~d~~~L~~~~i~~g~~i  219 (230)
                      -.|.++..+|+.....++.+.||.+++.-|+..-.-.+. .+.|+  |-.+.| +++.||.+.|+.+-..+
T Consensus       306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv  376 (380)
T KOG2086|consen  306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV  376 (380)
T ss_pred             ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence            467889999999999999999999999999987644343 45554  556777 67899999999876544

>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor

Probab=84.99  E-value=2.4  Score=27.26  Aligned_cols=50  Identities=8%  Similarity=0.139  Sum_probs=39.2

Q ss_pred             EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCC
Q 026933          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG  205 (230)
Q Consensus       156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~  205 (230)
                      .|..++|+...+.+.+.+|++++-+..+++.++.|+...|--+-..++|.
T Consensus         3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~   52 (77)
T cd01818           3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH   52 (77)
T ss_pred             EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence            35567888999999999999999999999999999887664332224443

Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.

>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B

Probab=83.79  E-value=4.6  Score=26.88  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=30.5

Q ss_pred             EEeec-cccHHHHHHHhch-hcCCCC-C---ceEEEECCee----cCCCCcccccCCCCCCEEEE
Q 026933          167 LEVES-SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGKQ----LEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       167 ~~v~~-~~tV~~LK~~i~~-~~gi~~-~---~~~L~~~g~~----L~d~~~L~~~~i~~g~~i~l  221 (230)
                      +.++. ..|+.+|-++|.+ +.|... +   .-.++|....    -...++|+++||.+|+.+.+
T Consensus         2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v   66 (87)
T PF14732_consen    2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTV   66 (87)
T ss_dssp             EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEE
T ss_pred             EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEE
Confidence            34443 5699999888766 566433 2   3344454432    23468999999999998876

>KOG4261 consensus Talin [Cytoskeleton]

Probab=83.65  E-value=4.9  Score=37.38  Aligned_cols=108  Identities=26%  Similarity=0.354  Sum_probs=81.1

Q ss_pred             CcEEeeccCccCcHHHHHHHHhhHhC---CCCCCeEEEe------cCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933           86 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  156 (230)
Q Consensus        86 g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~------~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~  156 (230)
                      +-.-++.++|+++|-+--..|.+++.   .-++...|+.      .|-.|+.++++.+|-+.+++++.-.   ..+-.+.
T Consensus        12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~---~k~r~lk   88 (1003)
T KOG4261|consen   12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYK---RKQRPLK   88 (1003)
T ss_pred             ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchh---hhcccce
Confidence            44457888999999998888877763   2255666653      2456789999999999999987432   2334567


Q ss_pred             EeeecCceEEEEeeccccHHHHHHHhchhcCCC-CCceEEE
Q 026933          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI  196 (230)
Q Consensus       157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~-~~~~~L~  196 (230)
                      ++...|..-++.++...+|.+|.--|+.+.||. .+.+.|.
T Consensus        89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslv  129 (1003)
T KOG4261|consen   89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLV  129 (1003)
T ss_pred             eeecccccceeeecccccHHHHHHHHHhccCccchhhhhhh
Confidence            888899888999999999999999999998874 2344443

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=83.31  E-value=8.4  Score=23.78  Aligned_cols=57  Identities=14%  Similarity=0.295  Sum_probs=40.6

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      +|+.+  ++..+.||.++=..    .+++++.-.+.+||..+... ...+.-+++++++.++-.
T Consensus         6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~   62 (66)
T PRK05659          6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHA   62 (66)
T ss_pred             CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEE
Confidence            56644  56678899988765    68888877777888665543 345566788898887643

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=83.15  E-value=2.7  Score=27.33  Aligned_cols=36  Identities=11%  Similarity=0.250  Sum_probs=32.6

Q ss_pred             EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933           88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      ++.+.+.+..+.++|..+|+++...+++...|.|..
T Consensus         8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~   43 (78)
T cd06411           8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA   43 (78)
T ss_pred             EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence            567788899999999999999999999999999864

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=82.39  E-value=4.5  Score=26.53  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             ccCCcEEEEEecC--CCcHHHHHHHhhhhhCCC
Q 026933            7 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIP   37 (230)
Q Consensus         7 ~~~g~~~~~~v~~--~~tv~~lK~~i~~~~gip   37 (230)
                      +.+|.+..+.+++  ..+..+|++.|...++++
T Consensus         6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~   38 (81)
T cd06396           6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN   38 (81)
T ss_pred             EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence            5679999999999  779999999999999999

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=82.26  E-value=5.6  Score=25.77  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             CCcEEE-EEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933            9 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         9 ~g~~~~-~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~   46 (230)
                      +|.... +.+.++.|..+|+.+|...++.+...-.+.|.
T Consensus         9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~   47 (84)
T PF00564_consen    9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK   47 (84)
T ss_dssp             TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence            455555 99999999999999999999999777777775

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=82.03  E-value=3.4  Score=33.46  Aligned_cols=69  Identities=16%  Similarity=0.278  Sum_probs=56.5

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l  221 (230)
                      -.+.++..+|++...++++..|...++.-|.-..+...+.+.|.  |-....   +-.++|..+++-+-+++.+
T Consensus       211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil  284 (290)
T KOG2689|consen  211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL  284 (290)
T ss_pred             eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence            35778889999999999999999999999999998877777776  433444   3358999999999888765

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=81.45  E-value=3.7  Score=29.07  Aligned_cols=55  Identities=22%  Similarity=0.498  Sum_probs=37.9

Q ss_pred             cCc-cCcHHHHHHHHhhHh----CCCC------CCeEEEec----------------C-ccc---CCCcchhhcccccCC
Q 026933           93 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA----------------G-KQL---EDGRTLADYNIQKES  141 (230)
Q Consensus        93 v~~-~~tV~~lK~~i~~~~----~i~~------~~q~L~~~----------------g-~~L---~d~~~l~~~~i~~~~  141 (230)
                      ++. +.||.+|++.+.+..    |+||      +..++.+.                . ..|   +++.+|.++|+.+..
T Consensus        22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET  101 (122)
T PF10209_consen   22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET  101 (122)
T ss_pred             CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence            776 889999988877754    4544      22333321                1 456   678899999999998


Q ss_pred             ceEEEE
Q 026933          142 TLHLVL  147 (230)
Q Consensus       142 ~i~l~~  147 (230)
                      .|.+.-
T Consensus       102 EiSfF~  107 (122)
T PF10209_consen  102 EISFFN  107 (122)
T ss_pred             eeeeeC
Confidence            886653

>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14

Probab=81.26  E-value=7.4  Score=24.94  Aligned_cols=43  Identities=21%  Similarity=0.337  Sum_probs=38.3

Q ss_pred             EEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933            5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         5 v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      |-.++|.+..+.+.|+.||.|+=.+.-+..|++++.-.++.-|
T Consensus         4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g   46 (73)
T cd01817           4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG   46 (73)
T ss_pred             EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence            3467899999999999999999999999999999888888655

RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=81.13  E-value=3.7  Score=26.65  Aligned_cols=37  Identities=11%  Similarity=0.214  Sum_probs=33.7

Q ss_pred             cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933           11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus        11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      -|+.+.+.++.+..+|...|.+++..|++.-.|.|..
T Consensus         7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~   43 (78)
T cd06411           7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA   43 (78)
T ss_pred             EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence            4677999999999999999999999999999999853

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=81.08  E-value=7  Score=25.10  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=32.9

Q ss_pred             EEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933            3 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~   46 (230)
                      |.+.. +|..+.+.+. .+.|..+|+.+|.+.++++...-.+.|.
T Consensus         3 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~   46 (81)
T cd05992           3 VKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP   46 (81)
T ss_pred             EEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence            44433 4678888888 9999999999999999998644445553

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=81.02  E-value=10  Score=23.26  Aligned_cols=57  Identities=19%  Similarity=0.223  Sum_probs=36.9

Q ss_pred             EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .+++++..|+++|.+.+.    ++ ....+..+|.....+ .-.+.-+++||.|.++--..||
T Consensus         9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG   65 (65)
T PRK06944          9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG   65 (65)
T ss_pred             EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence            345566778999887653    33 235666888776532 2344558999999887755544

>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.97  E-value=5.9  Score=32.12  Aligned_cols=70  Identities=16%  Similarity=0.256  Sum_probs=56.0

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL  145 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l  145 (230)
                      .-.+.|+..+|+++...+++..|..+++.-|.-..+...+...|.  |..+.+.   -.++|...++.+.+++.+
T Consensus       210 ~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil  284 (290)
T KOG2689|consen  210 QCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL  284 (290)
T ss_pred             ceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence            356788889999999999999999999999999999887777776  3344442   257899999988887643

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=80.65  E-value=4.5  Score=37.23  Aligned_cols=43  Identities=23%  Similarity=0.463  Sum_probs=38.2

Q ss_pred             cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCccc
Q 026933           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL  126 (230)
Q Consensus        84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L  126 (230)
                      .+...+.+.++++.|...++..|...+|+|...|.|.|.|...
T Consensus       322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~  364 (732)
T KOG4250|consen  322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS  364 (732)
T ss_pred             ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence            3567788999999999999999999999999999999987544

>PRK07440 hypothetical protein; Provisional

Probab=80.55  E-value=11  Score=23.85  Aligned_cols=65  Identities=17%  Similarity=0.282  Sum_probs=44.6

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      .|.+.+   +|+.  .+++...|+.+|-.    ..++++....+-.+|..+.. ....+.-+++|+.|.++--..
T Consensus         4 ~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~   68 (70)
T PRK07440          4 PITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVG   68 (70)
T ss_pred             ceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEec
Confidence            355554   5654  45567788888765    45788888888899977753 235556688999998775443

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=80.40  E-value=9.1  Score=33.82  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=54.9

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCC----CCCceeEE---ecCccccCCccccccccccCCeEEEEEEe
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi----p~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      ||+|... .+..++-++.+.+|.|+--.+.+..+=    +.....+.   ..|..|+.+.||.+.|+.+++.+++....
T Consensus         4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~   81 (452)
T TIGR02958         4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS   81 (452)
T ss_pred             EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence            5677544 355889999999999999999888764    22222333   46899999999999999999999998643

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	230
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		1e-80
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		6e-80
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		6e-80
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		8e-80
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		8e-80
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		3e-79
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		3e-79
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		2e-78
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		2e-78
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		3e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		3e-38
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-38
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		6e-38
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		5e-37
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		7e-38
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-38
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		8e-38
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		2e-37
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		2e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		2e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		2e-37
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		3e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-37
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-37
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		4e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		4e-37
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		4e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		4e-37
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		4e-37
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		5e-37
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		5e-37
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		5e-37
3jvz_X	81	E2~ubiquitin-Hect Length = 81		5e-37
3jvz_X	81	E2~ubiquitin-Hect Length = 81		5e-37
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		8e-37
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		8e-37
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		8e-37
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		1e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		1e-36
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		1e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		1e-36
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		1e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		1e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		1e-36
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		1e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		2e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		2e-36
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		2e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-36
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		2e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		2e-36
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		2e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-36
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-36
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		2e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-36
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-36
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		3e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		3e-36
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		3e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-36
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-36
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		3e-36
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		4e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		4e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		5e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		5e-36
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		5e-36
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		6e-36
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		6e-36
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		6e-36
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		6e-36
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		6e-36
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		6e-36
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		7e-36
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		7e-36
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		7e-36
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		7e-36
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		7e-36
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		7e-36
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		7e-36
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		7e-36
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		7e-36
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		7e-36
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		7e-36
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		8e-36
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		8e-36
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		8e-36
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		1e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		1e-35
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		1e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		3e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		3e-35
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		3e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		3e-35
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		3e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		3e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		3e-35
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		3e-35
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		3e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-35
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		4e-35
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		6e-35
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		6e-35
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		7e-35
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		7e-35
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		7e-35
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		9e-35
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		9e-35
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		9e-35
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-34
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-34
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		2e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		2e-34
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		2e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		2e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		2e-34
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		2e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-34
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		4e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		4e-34
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		4e-34
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		4e-34
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		4e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-34
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-34
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		5e-34
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		5e-34
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		5e-34
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-33
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		2e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		2e-33
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		2e-33
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		9e-33
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		9e-33
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		2e-32
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		2e-32
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		7e-31
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		9e-31
4hk2_A	78	U7ub25.2540 Length = 78		3e-30
4hk2_A	78	U7ub25.2540 Length = 78		3e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-30
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-30
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		1e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		1e-25
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		1e-25
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		3e-22
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		3e-22
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		1e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		1e-21
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		1e-21
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		6e-21
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		6e-21
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		3e-20
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		3e-20
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		4e-20
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		5e-20
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		5e-20
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-19
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		1e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		2e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		2e-19
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		2e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		2e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		2e-19
1ndd_B	76	Structure Of Nedd8 Length = 76		2e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-19
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-19
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		5e-19
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		5e-19
3rt3_B	159	Complex Of Influenza Virus Protein With Host Anti-V		1e-12
3sdl_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		3e-12
3r66_C	164	Crystal Structure Of Human Isg15 In Complex With Ns		4e-12
3pse_B	156	Structure Of A Viral Otu Domain Protease Bound To I		3e-11
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		5e-11
2dzi_A	81	2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-		5e-11
1z2m_A	155	Crystal Structure Of Isg15, The Interferon-Induced		1e-10
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		1e-08
2knb_A	81	Solution Nmr Structure Of The Parkin Ubl Domain In		1e-08
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		1e-08
2zeq_A	78	Crystal Structure Of Ubiquitin-Like Domain Of Murin		1e-08
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-08
1iyf_A	81	Solution Structure Of Ubiquitin-Like Domain Of Huma		2e-08
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		3e-08
2l7r_A	93	Solution Nmr Structure Of N-Terminal Ubiquitin-Like		3e-08
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		7e-08
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		7e-08
2hj8_A	88	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		1e-07
2faz_A	78	Ubiquitin-Like Domain Of Human Nuclear Zinc Finger		1e-07
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		4e-07
1wy8_A	89	Solution Structure Of The N-Terminal Ubiquitin-Like		4e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		4e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		4e-07
3b1l_X	76	Crystal Structure Of Parkin Ubiquitin-Like Domain R		4e-07
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		1e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		1e-06
3phx_B	79	Otu Domain Of Crimean Congo Hemorrhagic Fever Virus		1e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		2e-06
3m63_B	101	Crystal Structure Of Ufd2 In Complex With The Ubiqu		2e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		2e-06
1wh3_A	87	Solution Structure Of C-Terminal Ubiquitin Like Dom		2e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		2e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		2e-06
1zkh_A	86	Solution Structure Of A Human Ubiquitin-Like Domain		2e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		3e-06
1wx9_A	86	Solution Structure Of The N-Terminal Ubiquitin-Like		3e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		8e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		8e-06
1we7_A	115	Solution Structure Of Ubiquitin-Like Domain In Sf3a		8e-06
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		2e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		2e-05
4dwf_A	90	Crystal Structure Of A Hla-B Associated Transcript		2e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		3e-05
4eew_A	88	Crystal Structure Of The Ubl Domain Of Bag6 Length		3e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		4e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		4e-05
1ttn_A	106	Solution Structure Of The Ubiquitin-Like Domain Of		4e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		8e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		8e-05
2bwe_S	77	The Crystal Structure Of The Complex Between The Ub		8e-05
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		2e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		2e-04
1p1a_A	85	Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Le		2e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		2e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		2e-04
1uel_A	95	Solution Structure Of Ubiquitin-Like Domain Of Hhr2		2e-04

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  295 bits (755), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/154 (95%), Positives = 151/154 (98%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 194
           YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQR
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (749), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  293 bits (749), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  292 bits (748), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  292 bits (748), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 146/152 (96%), Positives = 150/152 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 149/151 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197
           QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 198 AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  288 bits (737), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/151 (95%), Positives = 148/151 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 77/77 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/83 (91%), Positives = 78/83 (93%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 136 NIQKESTLHLVLRLRGGMQIFVK 158
           NIQKESTLHLVLRLRGG Q F K
Sbjct: 165 NIQKESTLHLVLRLRGGGQTFTK 187

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 164
Query: 212 NIQKESTLHLVLRLRGGG 229
           NIQKESTLHLVLRLRGGG
Sbjct: 165 NIQKESTLHLVLRLRGGG 182

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 77/78 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGGF 230
           IQKESTLHLVLRLRGGG 
Sbjct: 61  IQKESTLHLVLRLRGGGM 78

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 77/77 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGGG 229
           IQKESTLHLVLRLRGGG
Sbjct: 61  IQKESTLHLVLRLRGGG 77

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 62
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1  MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 61 IQKESTLHLVLRLRGGM 77
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/77 (93%), Positives = 76/77 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 137 IQKESTLHLVLRLRGGM 153
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGV 77

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYN
Sbjct: 1   MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 4   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 63
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 64  NIQKESTLHLVLRLRGG 80

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 81 IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 81  IQKESTLHLVLRLRGG 96

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/77 (96%), Positives = 76/77 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 61  NIQKESTLHLVLRLRGG 77

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 83 IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/76 (97%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 23  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 83  IQKESTLHLVLRLRGG 98

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score =  150 bits (380), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 76/78 (97%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 4   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTLHLVLRLRGG
Sbjct: 64  YNIQKESTLHLVLRLRGG 81

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLH VLRLRGG
Sbjct: 61 IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLH VLRLRGG
Sbjct: 61  IQKESTLHSVLRLRGG 76

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 134 DYNIQKESTLHLVLRLRG 151
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/78 (93%), Positives = 76/78 (97%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 6   RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 210 DYNIQKESTLHLVLRLRG 227
           +YNIQKESTLHLVLRLRG
Sbjct: 66  EYNIQKESTLHLVLRLRG 83

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 63 IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 63  IQKESTLHLVLRLRGG 78

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 64 IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 64 IQKESTLHLVLRLRGG 79

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 64  IQKESTLHLVLRLRGG 79

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRG 151
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRG 227
           NIQKESTLHLVLRLRG
Sbjct: 61  NIQKESTLHLVLRLRG 76

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8  MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 68 IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 76/76 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFV+TLTG+TITLEVESSDTIDNV+A+IQD+EGIPPDQQRLIFAG+QLEDGRTLADYN
Sbjct: 8   MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 68  IQRESTLHLVLRLRGG 83

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 73/76 (96%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 75/80 (93%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+D
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67
Query: 211 YNIQKESTLHLVLRLRGGGF 230
           YNIQ+ESTLHLVLRLRGG  
Sbjct: 68  YNIQRESTLHLVLRLRGGSM 87

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 64 IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 64  IQRESTLHLVLRLRGG 79

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG+QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 133 ADYNIQKESTLHLVLRLR 150
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/78 (92%), Positives = 75/78 (96%)
Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289
Query: 209 ADYNIQKESTLHLVLRLR 226
           +DYNIQKESTLHLVLRLR
Sbjct: 290 SDYNIQKESTLHLVLRLR 307

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRG 75
          IQKESTLHLVLRLRG
Sbjct: 61 IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRG 151
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP QQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
          QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 QKESTLHLVLRLRGG 76
          QKESTLHLVLRLRGG
Sbjct: 62 QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 138 QKESTLHLVLRLRGG 152
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
           QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 214 QKESTLHLVLRLRGG 228
           QKESTLHLVLRLRGG
Sbjct: 62  QKESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAG QLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST HLVLRLRGG
Sbjct: 61 IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQ EDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST HLVLRLRGG
Sbjct: 61  IQKESTXHLVLRLRGG 76

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 73/77 (94%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TL+GK ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 76/79 (96%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 9   GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 68
Query: 212 NIQKESTLHLVLRLRGGGF 230
           NIQKESTLHLVLRLRGGG 
Sbjct: 69  NIQKESTLHLVLRLRGGGL 87

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKE IPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 134 DYNIQKESTLHLVLRLR 150
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 72/77 (93%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQIFV TLTG  ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+
Sbjct: 15  RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 210 DYNIQKESTLHLVLRLR 226
           DYNIQKESTLHLVLRLR
Sbjct: 75  DYNIQKESTLHLVLRLR 91

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 55
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 56 LADYNIQKESTLHLVLRLRGG 76
          L+DYNIQKESTLHLVLRLRGG
Sbjct: 61 LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 131
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 132 LADYNIQKESTLHLVLRLRGG 152
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 75/81 (92%), Gaps = 5/81 (6%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRT 207
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG     IPPDQQRLIFAGKQLEDGRT
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 208 LADYNIQKESTLHLVLRLRGG 228
           L+DYNIQKESTLHLVLRLRGG
Sbjct: 61  LSDYNIQKESTLHLVLRLRGG 81

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGI  DQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRL 73
          IQKESTLHLVLRL
Sbjct: 61 IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRL 149
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/73 (95%), Positives = 72/73 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRL 225
           IQKESTLHLVLRL
Sbjct: 61  IQKESTLHLVLRL 73

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKEST+HLVLRLRGG
Sbjct: 61 IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 74/76 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+F+KTLTGKT+T+EVE SDT++N KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKEST+HLVLRLRGG
Sbjct: 61  IQKESTIHLVLRLRGG 76

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 1  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53
          MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1  MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 54 RTLADYNIQKESTLHLVLRLRGG 76
          RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 77  MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 130 RTLADYNIQKESTLHLVLRLRGG 152
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 75/83 (90%), Gaps = 7/83 (8%)
Query: 153 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 205
           MQIFVKTLT       GKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDG
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 206 RTLADYNIQKESTLHLVLRLRGG 228
           RTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  RTLSDYNIQKESTLHLVLRLRGG 83

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLV 70
          IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLV 146
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLV 222
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLR 72
          IQKESTLHLVLR
Sbjct: 61 IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLR 148
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/72 (95%), Positives = 71/72 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLR 224
           IQKESTLHLVLR
Sbjct: 61  IQKESTLHLVLR 72

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVKTLTGKTITLEVE +D+ID +KAKIQ+KEGIPPDQQRLIFAGKQLE+G+TL+DY
Sbjct: 3   AMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDY 62
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLHLVLRLRGG
Sbjct: 63  NIQKESTLHLVLRLRGG 79

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 71/76 (93%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTG TITLEVESSDTIDNVK+KIQ   GIPPDQQ LIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          +QKEST+HLVLRLRGG
Sbjct: 61 LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 75/76 (98%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+FVKTLTGKT+T+E+E SDT++N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           +QKEST+HLVLRLRGG
Sbjct: 61  LQKESTIHLVLRLRGG 76

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 52
          MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 128
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTG--------KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 204
           MQIFVKTLTG        KTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 52
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 53 GRTLADYNIQKESTLHLVLRLRGG 76
          GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61 GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 128
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 129 GRTLADYNIQKESTLHLVLRLRGG 152
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/84 (86%), Positives = 75/84 (89%), Gaps = 8/84 (9%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLED 204
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEG        IPPDQQRLIFAGKQLED
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
           GRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  GRTLSDYNIQKESTLHLVLRLRGG 84

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 136 NIQKESTLHLVLRLRGG 152
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 69/77 (89%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            MQIFVK LTGKT TLEVE SDTI+NVKAKIQDK G PPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   AMQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDY 60
Query: 212 NIQKESTLHLVLRLRGG 228
           NIQKESTLH V RLRGG
Sbjct: 61  NIQKESTLHCVRRLRGG 77

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLR 150
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQ+L+FA KQLEDGRTL+D
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLR 226
           YNI KES L+LVLRLR
Sbjct: 61  YNIHKESFLYLVLRLR 76

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  130 bits (326), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 135 YNIQKESTLHLVLRLRGGM 153
           YN+QKESTLHLVLRLRGG+
Sbjct: 64  YNVQKESTLHLVLRLRGGV 82

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 69/78 (88%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVKTLTGKTIT++V+ +DT+  VKAKI DKEGIPPDQQRLIF GKQLED   ++D
Sbjct: 4   GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+QKESTLHLVLRLRGG
Sbjct: 64  YNVQKESTLHLVLRLRGG 81

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 68/78 (87%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G MQIFVK  TGKT TLEVE SDTI+NVKAKIQDK GIPPDQQ LIFAGK+LEDGRTL+D
Sbjct: 1   GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           YNIQKESTL  V RLRGG
Sbjct: 61  YNIQKESTLRGVRRLRGG 78

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKESTL 67
          IQK STL
Sbjct: 64 IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKESTL 143
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKESTL 219
           IQK STL
Sbjct: 64  IQKWSTL 70

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 IQKEST 66
          I   S 
Sbjct: 64 IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 137 IQKEST 142
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/66 (81%), Positives = 58/66 (87%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 213 IQKEST 218
           I   S 
Sbjct: 64  IHNHSA 69

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/53 (94%), Positives = 51/53 (96%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 53

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
          I+  S LHLVL LRGG
Sbjct: 61 IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 137 IQKESTLHLVLRLRGG 152
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 60/76 (78%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60
Query: 213 IQKESTLHLVLRLRGG 228
           I+  S LHLVL LRGG
Sbjct: 61  IEGGSVLHLVLALRGG 76

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVLRLRGG
Sbjct: 71  YKILGGSVLHLVLRLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL+LRGG
Sbjct: 71  YKILGGSVLHLVLQLRGG 88

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/77 (57%), Positives = 59/77 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGGG 229
           I   S LHLVL LRGGG
Sbjct: 61  ILGGSVLHLVLALRGGG 77

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 59/78 (75%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 4   GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKILGGSVLHLVLALRGG 81

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 58/78 (74%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T AD
Sbjct: 1   AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 60
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 61  YKILGGSVLHLVLALRGG 78

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 62 ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 2   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 61
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 62  ILGGSVLHLVLALRGG 77

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 67 ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 7   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 66
Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 67  ILGGSVLHLVLALRGG 82

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 135 YNIQKESTLHLVLRLRGG 152
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G   I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ  D +T AD
Sbjct: 4   GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAAD 63
Query: 211 YNIQKESTLHLVLRLRGG 228
           Y I   S LHLVL LRGG
Sbjct: 64  YKIXGGSVLHLVLALRGG 81

>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral Factor Length = 159

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
             L F GK LED   L +Y ++  ST+ + LRLRGGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158

>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza B Virus, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1 N-Terminal Region From Influenza Virus B, Northeast Structural Genomics Consortium Target Ids Hx6481, Hr2873, And Or2 Length = 164

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 9   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 68
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 69  SQGLGPGSTVLLVVDKXDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 128
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 129 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 164

>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To Interferon- Stimulated Gene 15 (Isg15) Length = 156

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227
             L F GK LED   L +Y ++  ST+ + LRLRG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 136 NIQKESTLHLVLR 148
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like Domain In Human Ubiquitin-Like Protein 4a (Gdx) Length = 81

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY
Sbjct: 7   GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDY 66
Query: 212 NIQKESTLHLVLR 224
           +I   S L+LV++
Sbjct: 67  SIGPNSKLNLVVK 79

>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced Ubiquitin Cross Reactive Protein Length = 155

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61
Query: 134 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121
Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226
             L F GK LED   L +Y ++  ST+ + LRLR
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In Complex With The Endophilin-A1 Sh3 Domain Length = 81

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 49/74 (66%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L++  T+ +
Sbjct: 4   GSMIVFVRFNSSYGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELQNHLTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            +++++S +H+V R
Sbjct: 64  CDLEQQSIVHIVQR 77

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 136 NIQKESTLHLVLRLR 150
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|2ZEQ|A Chain A, Crystal Structure Of Ubiquitin-Like Domain Of Murine Parkin Length = 78

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61
Query: 212 NIQKESTLHLVLRLR 226
           +++++S +H+V R R
Sbjct: 62  DLEQQSIVHIVQRPR 76

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 135 YNIQKESTLHLVLR 148
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|1IYF|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Human Parkin Length = 81

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           G M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ +
Sbjct: 4   GSMIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQN 63
Query: 211 YNIQKESTLHLVLR 224
            ++ ++S +H+V R
Sbjct: 64  CDLDQQSIVHIVQR 77

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 134 DYNIQKESTLHLVLRLRGG 152
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2L7R|A Chain A, Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166 Length = 93

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL 
Sbjct: 17  RGSMQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74
Query: 210 DYNIQKESTLHLVLRLRGG 228
              ++  +TL +  R+ GG
Sbjct: 75  QCGVEALTTLEVAGRMLGG 93

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRGGMQ 78
          ++  ST+ + LRLRGG++
Sbjct: 65 LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRGGMQ 154
           ++  ST+ + LRLRGG++
Sbjct: 65  LKPLSTVFMNLRLRGGLE 82

>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The Interferon Alpha-Inducible Isg15 Protein From Homo Sapiens. Northeast Structural Genomics Target Hr2873b Length = 88

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRGG 228
           ++  ST+ + LRLRGG
Sbjct: 65  LKPLSTVFMNLRLRGG 80

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 75  GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 133 ADYNIQKESTLHLVLR 148
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger Protein Np95 Length = 78

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 151 GGMQIFVKTLTGK-TITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+ T T++  S  T ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60
Query: 209 ADYNIQKESTLHLVLR 224
            DY ++   T+ L++R
Sbjct: 61  FDYEVRLNDTIQLLVR 76

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 134 DYNIQKESTLHLVLR 148
           DY++     + L++R
Sbjct: 67  DYDVGLNDIIQLLVR 81

>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In Human Np95ICBP90-Like Ring Finger Protein (Nirf) Length = 89

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66
Query: 210 DYNIQKESTLHLVLR 224
           DY++     + L++R
Sbjct: 67  DYDVGLNDIIQLLVR 81

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 61 IQKESTLHLVLRLR 74
          ++++S +H+V R R
Sbjct: 61 LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 137 IQKESTLHLVLRLR 150
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3B1L|X Chain X, Crystal Structure Of Parkin Ubiquitin-Like Domain R33q Mutant Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 48/74 (64%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60
Query: 213 IQKESTLHLVLRLR 226
           ++++S +H+V R R
Sbjct: 61  LEQQSIVHIVQRPR 74

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 137 IQKESTLHLVLRLRG 151
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In Complex With Isg15 Length = 79

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64
Query: 213 IQKESTLHLVLRLRG 227
           ++  ST+ + LRLRG
Sbjct: 65  LKPLSTVFMNLRLRG 79

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 56  LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 114
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Dsk2 Length = 101

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 132 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP 190
           ++DY+I     L+     +G M + +   +G+    + V    T+   K  I    GIP 
Sbjct: 10  MSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPV 65
Query: 191 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
             QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 136 NIQKESTLHL 145
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain (P59 Oasl) Length = 87

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66
Query: 212 NIQKESTLHL 221
            IQ   TL L
Sbjct: 67  GIQDSDTLIL 76

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1ZKH|A Chain A, Solution Structure Of A Human Ubiquitin-Like Domain In Sf3a1 Length = 86

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 39/68 (57%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78
Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 136 NIQKESTLHLVLRLRGG 152
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain In The Human Bat3 Protein Length = 86

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 7   GLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 66
Query: 212 NIQKESTLHLVLRLRGG 228
           N+  +  +HLV R   G
Sbjct: 67  NVGGK-VIHLVERAPSG 82

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 8   LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 68  HLVLRLRGG 76
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 144 HLVLRLRGG 152
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|1WE7|A Chain A, Solution Structure Of Ubiquitin-Like Domain In Sf3a120 Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102
Query: 220 HLVLRLRGG 228
           HL L+ R G
Sbjct: 103 HLALKERSG 111

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 66 VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 137 IQKESTLHLVLR 148
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1.80 A Resolution Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 213 IQKESTLHLVLR 224
           +  +  +HLV R
Sbjct: 66  VGGK-VIHLVER 76

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 136 NIQKESTLHLVLR 148
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
            +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +Y
Sbjct: 17  SLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEY 76
Query: 212 NIQKESTLHLVLR 224
           N+  +  +HLV R
Sbjct: 77  NVGGK-VIHLVER 88

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 61 IQKESTLHLVL 71
          I K+  + +++
Sbjct: 84 IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 137 IQKESTLHLVL 147
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|1TTN|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Human Dc- Ubp From Dendritic Cells Length = 106

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83
Query: 213 IQKESTLHLVL 223
           I K+  + +++
Sbjct: 84  IPKDYVVQVIV 94

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
          + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 91  LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And Ubl Domains Of Dsk2 Length = 77

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 222
           + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV
Sbjct: 18  VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 73

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 58 DYNI 61
          +Y I
Sbjct: 64 EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 134 DYNI 137
           +Y I
Sbjct: 64  EYKI 67

>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b Length = 85

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 4   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 210 DYNI 213
           +Y I
Sbjct: 64  EYKI 67

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYNI 61
          +Y I
Sbjct: 61 EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 134 DYNI 137
           +Y I
Sbjct: 61  EYKI 64

>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b Complexed With Ubiquitin-Interacting Motif Of Proteasome Subunit S5a Length = 95

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 210 DYNI 213
           +Y I
Sbjct: 61  EYKI 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	4e-82
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	3e-81
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	3e-80
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	3e-80
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	8e-80
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	8e-80
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	1e-69
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	1e-68
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	8e-45
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	5e-66
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	2e-65
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	5e-58
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	4e-44
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-55
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-55
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	5e-43
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-54
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-52
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	4e-49
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	8e-53
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	8e-53
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-52
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-52
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-52
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-50
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	1e-51
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-51
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-48
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-51
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-51
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	5e-47
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-51
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-51
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	8e-51
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	8e-50
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	8e-50
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	1e-46
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	2e-49
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	2e-49
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	3e-46
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	4e-49
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-48
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	3e-48
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	6e-49
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-48
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-48
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	7e-49
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	7e-49
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	5e-48
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	9e-49
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	3e-48
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	3e-48
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	1e-48
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	1e-48
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	6e-48
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-48
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-48
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-48
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	7e-48
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	1e-47
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-46
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-47
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-47
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	7e-47
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	4e-47
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	4e-47
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	4e-47
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	3e-46
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	3e-46
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	6e-45
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	6e-46
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	6e-46
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	4e-44
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	1e-45
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	1e-45
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	4e-45
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	1e-44
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	1e-44
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	3e-44
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	3e-44
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	3e-44
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	3e-44
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	7e-44
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	7e-44
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	1e-42
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	1e-43
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-43
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-43
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	3e-43
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	3e-43
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	1e-42
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	3e-43
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	3e-43
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	3e-43
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	4e-43
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	4e-43
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	4e-43
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	6e-43
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	6e-43
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-42
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	3e-42
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	3e-42
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	7e-41
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	4e-42
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	4e-42
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	5e-40
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	1e-41
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	1e-41
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-41
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-40
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-40
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-40
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	1e-40
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	1e-40
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	1e-40
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	5e-40
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	5e-40
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	5e-40
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-39
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-39
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-39
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	5e-39
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	5e-39
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	5e-39
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	3e-36
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	4e-36
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	2e-35
1we6_A	111	Splicing factor, putative; structural genomics, ub	3e-35
1we6_A	111	Splicing factor, putative; structural genomics, ub	3e-35
1we6_A	111	Splicing factor, putative; structural genomics, ub	4e-35
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	9e-31
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	1e-30
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	3e-30
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-29
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-29
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-29
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	2e-24
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	9e-24
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	1e-23
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	3e-21
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	4e-21
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	3e-20
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-18
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-18
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	2e-18
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-15
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-15
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	3e-15
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	6e-14
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	6e-14
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	6e-14
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	8e-14
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	8e-14
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	8e-14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	9e-14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	9e-14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	9e-14
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	2e-13
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	3e-13
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	3e-12
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	3e-13
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	3e-13
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	3e-13
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	4e-13
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	4e-13
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	4e-13
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	8e-13
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	8e-13
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	8e-13
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	3e-12
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	3e-12
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	3e-12
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	4e-12
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	4e-12
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	4e-12
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	2e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	2e-11
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	4e-11
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	3e-11
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	3e-11
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	3e-11
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	1e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	1e-07
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	1e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	5e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	6e-07
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	6e-07
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	3e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	3e-06
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	3e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	3e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	3e-06
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	3e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	3e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	3e-06
2kj6_A	97	Tubulin folding cofactor B; methods development, N	3e-06
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	4e-06
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	4e-06
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	2e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	1e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	3e-05
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	3e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	1e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	1e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	1e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	6e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	6e-05
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	6e-05
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	1e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	1e-04
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	1e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	2e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	2e-04
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	2e-04
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	2e-04
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	5e-04
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	5e-04
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	7e-04

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  241 bits (617), Expect = 4e-82
 Identities = 149/167 (89%), Positives = 154/167 (92%), Gaps = 1/167 (0%)

Query: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121
               +  LV R    MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF
Sbjct: 7   HHHHSSGLVPR-GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 122 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAK 181
           AGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAK
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 182 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           IQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  239 bits (611), Expect = 3e-81
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 21  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 81  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 140

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 141 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (603), Expect = 3e-80
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score =  236 bits (603), Expect = 3e-80
 Identities = 146/152 (96%), Positives = 150/152 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  235 bits (601), Expect = 8e-80
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 3/157 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLA 133
           G  + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 134 DYNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
              +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
             L F GK LED   L +Y ++  ST+ + LRLRGGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  235 bits (600), Expect = 8e-80
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 3/157 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 58
             + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA 
Sbjct: 3   WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 59  YNIQKESTLHLV-LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
             +   ST+ LV  +    + I V+   G++ T EV  + T+ ++K ++   EG+  D  
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF 122

Query: 118 RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154
            L F GK LED   L +Y ++  ST+ + LRLRGG +
Sbjct: 123 WLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGGR 159

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  210 bits (535), Expect = 1e-69
 Identities = 92/167 (55%), Positives = 112/167 (67%), Gaps = 13/167 (7%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 117
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 118 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG-MQIFV 157
            L F  K L D   G +L+D     +  E+       L+ G +Q F+
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFL 164

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  207 bits (529), Expect = 1e-68
 Identities = 90/161 (55%), Positives = 108/161 (67%), Gaps = 12/161 (7%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 193
           IQKESTLHLVLRLRGG      FV      + ++ ++    +++ +  I+ +   P D  
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-- 118

Query: 194 RLIFAGKQLED---GRTLAD---YNIQKESTLHLVLRLRGG 228
            L F  K L D   G +L+D     +  E+       L+ G
Sbjct: 119 -LTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSG 158

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score =  146 bits (370), Expect = 8e-45
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGGF 230
           IQKESTLHLVLRLRGGG 
Sbjct: 61  IQKESTLHLVLRLRGGGG 78

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  201 bits (513), Expect = 5e-66
 Identities = 87/158 (55%), Positives = 96/158 (60%), Gaps = 10/158 (6%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
                    GK+I       D   N + K+  K G    +  + +        R L   +
Sbjct: 40  KGNLADVAPGKSIG-----GDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSD 94

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
                 L        G QIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLI
Sbjct: 95  -----WLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 149

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 158
           FAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG Q F K
Sbjct: 150 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score =  199 bits (508), Expect = 2e-65
 Identities = 91/180 (50%), Positives = 101/180 (56%), Gaps = 12/180 (6%)

Query: 50  LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           L+    L D  I K     L                GK+I       D   N + K+  K
Sbjct: 15  LQTYHKLPDNYITKSEAQALGWVA--SKGNLADVAPGKSIG-----GDIFSNREGKLPGK 67

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV 169
            G    +  + +        R L   +      L        G QIFVKTLTGKTITLEV
Sbjct: 68  SGRTWREADINYTSGFRNSDRILYSSD-----WLIYKTTDHYGGQIFVKTLTGKTITLEV 122

Query: 170 ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
           E SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGG
Sbjct: 123 EPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  185 bits (469), Expect = 5e-58
 Identities = 86/208 (41%), Positives = 111/208 (53%), Gaps = 11/208 (5%)

Query: 30  IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST-LHLVLRLRGG----MQIFVKTL 84
               +G    +  + F G  L +   L   + +++   L   L           +  K  
Sbjct: 100 FFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQK 159

Query: 85  TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTL 143
            G  +  ++  +    +V+     ++  P     ++      L     L+    +K   +
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 144 -----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                     + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 279

Query: 199 GKQLEDGRTLADYNIQKESTLHLVLRLR 226
           GKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 280 GKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score =  149 bits (376), Expect = 4e-44
 Identities = 79/156 (50%), Positives = 96/156 (61%), Gaps = 6/156 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY 59
             +  K   G  +  ++  +    +V+     ++  P     ++      L     L+  
Sbjct: 152 YIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKD 211

Query: 60  NIQKESTL-----HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114
             +K   +          + G MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP
Sbjct: 212 PNEKRDHMVLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 271

Query: 115 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150
           DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct: 272 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (434), Expect = 3e-55
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 48  KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 106
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 107 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  170 bits (434), Expect = 3e-55
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 124 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKI 182
           K       ++DY+I     L+     +G M + +   +G+    + V    T+   K  I
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAI 57

Query: 183 QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
               GIP   QRLI++GK L+D +T+  Y+IQ   ++HLV  
Sbjct: 58  NKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score =  139 bits (353), Expect = 5e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 86

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 87 HIQDGHSVHLVKS 99

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  169 bits (429), Expect = 2e-54
 Identities = 76/106 (71%), Positives = 83/106 (78%), Gaps = 3/106 (2%)

Query: 71  LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 130
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 131 TLADYNIQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 173
           TL+DYNIQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  163 bits (415), Expect = 3e-52
 Identities = 75/100 (75%), Positives = 82/100 (82%), Gaps = 3/100 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGRTL+DYN
Sbjct: 10  FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYN 69

Query: 61  IQKESTLHLVLRLRGGM---QIFVKTLTGKTITLEVESSD 97
           IQ+ESTLHLVLRLRGG        + L  K I L ++ S 
Sbjct: 70  IQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESR 109

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score =  155 bits (394), Expect = 4e-49
 Identities = 71/84 (84%), Positives = 75/84 (89%)

Query: 147 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR 206
               G  QIF KTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLI+AGKQLEDGR
Sbjct: 4   HHHHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGR 63

Query: 207 TLADYNIQKESTLHLVLRLRGGGF 230
           TL+DYNIQ+ESTLHLVLRLRGG  
Sbjct: 64  TLSDYNIQRESTLHLVLRLRGGSM 87

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 8e-53
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1  MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 61 IQKESTLHLVLRLRGGMQ 78
            +      V    G   
Sbjct: 61 YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 8e-53
 Identities = 5/78 (6%), Positives = 19/78 (24%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 137 IQKESTLHLVLRLRGGMQ 154
             +      V    G   
Sbjct: 61  YVQVRQPIFVAHTAGRYA 78

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score =  166 bits (422), Expect = 1e-52
 Identities = 5/77 (6%), Positives = 19/77 (24%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M      +  +     VE    +       ++ +    + +       +  + +  +  +
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 213 IQKESTLHLVLRLRGGG 229
             +      V    G  
Sbjct: 61  YVQVRQPIFVAHTAGRY 77

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  163 bits (414), Expect = 2e-52
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGK 87
          I   S LHLVL LRGG  +  K     
Sbjct: 61 ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  163 bits (414), Expect = 2e-52
 Identities = 44/87 (50%), Positives = 60/87 (68%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGK 163
           I   S LHLVL LRGG  +  K     
Sbjct: 61  ILGGSVLHLVLALRGGGGLRQKHHHHH 87

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score =  158 bits (401), Expect = 2e-50
 Identities = 44/77 (57%), Positives = 59/77 (76%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGGG 229
           I   S LHLVL LRGGG
Sbjct: 61  ILGGSVLHLVLALRGGG 77

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  161 bits (409), Expect = 1e-51
 Identities = 69/86 (80%), Positives = 77/86 (89%)

Query: 144 HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 204 DGRTLADYNIQKESTLHLVLRLRGGG 229
           DGRTL+DYNIQKESTLHLVLRLRGGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGGG 86

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  159 bits (405), Expect = 4e-51
 Identities = 68/85 (80%), Positives = 76/85 (89%)

Query: 68  HLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 127
           H       G+Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 128 DGRTLADYNIQKESTLHLVLRLRGG 152
           DGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 61  DGRTLSDYNIQKESTLHLVLRLRGG 85

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score =  152 bits (386), Expect = 4e-48
 Identities = 66/76 (86%), Positives = 74/76 (97%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+F+KTLTGKT T+E+E SDTI+N+KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 70 IQKESTLHLVLRLRGG 85

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (409), Expect = 2e-51
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 94
          IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61 IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  161 bits (409), Expect = 2e-51
 Identities = 75/94 (79%), Positives = 79/94 (84%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 170
           IQKESTLHLVLRLRGG      ++      LE  
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHH 94

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score =  149 bits (379), Expect = 5e-47
 Identities = 73/77 (94%), Positives = 75/77 (97%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGGG 229
           IQKESTLHLVLRLRGG 
Sbjct: 61  IQKESTLHLVLRLRGGR 77

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (403), Expect = 8e-51
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVL LRGG
Sbjct: 61 ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (403), Expect = 8e-51
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 137 IQKESTLHLVLRLRGG 152
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score =  158 bits (403), Expect = 8e-51
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 213 IQKESTLHLVLRLRGG 228
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (399), Expect = 8e-50
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 43  LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 102
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 103 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  157 bits (399), Expect = 8e-50
 Identities = 77/110 (70%), Positives = 81/110 (73%), Gaps = 4/110 (3%)

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 178
                  +E      D N         +L     MQIFVKTLTGKTITLEVE SDTI+NV
Sbjct: 6   DTNNDGWIEGDELYIDTNNDGWIEGDELL----AMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 179 KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           KAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score =  149 bits (378), Expect = 1e-46
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95

Query: 61  IQKESTLHLVLRLRGG 76
           IQKESTLHLVLRLRGG
Sbjct: 96  IQKESTLHLVLRLRGG 111

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  156 bits (395), Expect = 2e-49
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRGGMQIFVK 82
          ++  ST+ + LRLRGG++    
Sbjct: 65 LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  156 bits (395), Expect = 2e-49
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           ++  ST+ + LRLRGG++    
Sbjct: 65  LKPLSTVFMNLRLRGGLEHHHH 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score =  147 bits (374), Expect = 3e-46
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 213 IQKESTLHLVLRLRGGG 229
           ++  ST+ + LRLRGG 
Sbjct: 65  LKPLSTVFMNLRLRGGL 81

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  155 bits (393), Expect = 4e-49
 Identities = 73/80 (91%), Positives = 76/80 (95%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 136 NIQKESTLHLVLRLRGGMQI 155
           NIQKESTLHLVLRLRG   +
Sbjct: 61  NIQKESTLHLVLRLRGYADL 80

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  153 bits (389), Expect = 2e-48
 Identities = 73/78 (93%), Positives = 75/78 (96%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GMQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DY
Sbjct: 1   GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 60

Query: 212 NIQKESTLHLVLRLRGGG 229
           NIQKESTLHLVLRLRG  
Sbjct: 61  NIQKESTLHLVLRLRGYA 78

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score =  152 bits (387), Expect = 3e-48
 Identities = 72/79 (91%), Positives = 75/79 (94%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 2  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61

Query: 61 IQKESTLHLVLRLRGGMQI 79
          IQKESTLHLVLRLRG   +
Sbjct: 62 IQKESTLHLVLRLRGYADL 80

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  154 bits (391), Expect = 6e-49
 Identities = 71/79 (89%), Positives = 74/79 (93%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 211 YNIQKESTLHLVLRLRGGG 229
           YNIQK STL L+LRLRGGG
Sbjct: 62  YNIQKWSTLFLLLRLRGGG 80

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 2e-48
 Identities = 70/78 (89%), Positives = 73/78 (93%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+D
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 135 YNIQKESTLHLVLRLRGG 152
           YNIQK STL L+LRLRGG
Sbjct: 62  YNIQKWSTLFLLLRLRGG 79

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score =  152 bits (387), Expect = 2e-48
 Identities = 70/76 (92%), Positives = 73/76 (96%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          IQK STL L+LRLRGG
Sbjct: 64 IQKWSTLFLLLRLRGG 79

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 7e-49
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  154 bits (391), Expect = 7e-49
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
            G M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T A
Sbjct: 10  GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAA 69

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY I   S LHLVLRLRGG
Sbjct: 70  DYKILGGSVLHLVLRLRGG 88

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score =  152 bits (385), Expect = 5e-48
 Identities = 44/76 (57%), Positives = 59/76 (77%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY 
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 72

Query: 61 IQKESTLHLVLRLRGG 76
          I   S LHLVLRLRGG
Sbjct: 73 ILGGSVLHLVLRLRGG 88

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  154 bits (390), Expect = 9e-49
 Identities = 62/77 (80%), Positives = 69/77 (89%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 213 IQKESTLHLVLRLRGGG 229
           I   S L+L+L+LRGGG
Sbjct: 64  IHNHSALYLLLKLRGGG 80

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 3e-48
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 61 IQKESTLHLVLRLRGG 76
          I   S L+L+L+LRGG
Sbjct: 64 IHNHSALYLLLKLRGG 79

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score =  152 bits (386), Expect = 3e-48
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M+I VKTL G+TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 4   MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63

Query: 137 IQKESTLHLVLRLRGG 152
           I   S L+L+L+LRGG
Sbjct: 64  IHNHSALYLLLKLRGG 79

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  154 bits (390), Expect = 1e-48
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 61  IQKESTLHLVLRLRGGMQIFVK 82
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  154 bits (390), Expect = 1e-48
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 137 IQKESTLHLVLRLRGGMQIFVK 158
           I K+  + +++         V+
Sbjct: 84  IPKDYVVQVIVSQPVQNPTPVE 105

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  152 bits (386), Expect = 6e-48
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 24  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 213 IQKESTLHLVLRLRGGG 229
           I K+  + +++      
Sbjct: 84  IPKDYVVQVIVSQPVQN 100

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  152 bits (385), Expect = 4e-48
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQ+ESTLHLVLRLRGG
Sbjct: 61 IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  152 bits (385), Expect = 4e-48
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score =  152 bits (385), Expect = 4e-48
 Identities = 72/76 (94%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQ+ESTLHLVLRLRGG
Sbjct: 61  IQRESTLHLVLRLRGG 76

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (384), Expect = 7e-48
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 135 YNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           YN+  +  +HLV R      +     +G
Sbjct: 64  YNVGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  151 bits (383), Expect = 1e-47
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTG 86
          +  +  +HLV R      +     +G
Sbjct: 66 VGGK-VIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score =  147 bits (374), Expect = 3e-46
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
             +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +
Sbjct: 4   DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQE 63

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+  +  +HLV R    
Sbjct: 64  YNVGGK-VIHLVERAPPQ 80

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (381), Expect = 2e-47
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 135 YNIQKESTLHLVLRLRGG 152
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  150 bits (381), Expect = 2e-47
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
            G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 211 YNIQKESTLHLVLRLRGG 228
           Y IQ   TL L  +   G
Sbjct: 66  YGIQDSDTLILSKKKGSG 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score =  149 bits (377), Expect = 7e-47
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  149 bits (378), Expect = 4e-47
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 61 LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  149 bits (378), Expect = 4e-47
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 137 IQKESTLHLVLRLRG 151
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score =  149 bits (378), Expect = 4e-47
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 1   MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 213 IQKESTLHLVLRLRG 227
           ++++S +H+V R R 
Sbjct: 61  LEQQSIVHIVQRPRR 75

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (373), Expect = 3e-46
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 121 FAGKQLEDGRTLADYNIQKESTLHLVLR 148
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  147 bits (373), Expect = 3e-46
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           ++   +    +     +++ VKTL  +T T  V +   +   K  I     IP ++QRLI
Sbjct: 2   MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61

Query: 197 FAGKQLEDGRTLADYNIQKESTLHLVLR 224
           + G+ L+D + L +YN+  +  +HLV R
Sbjct: 62  YQGRVLQDDKKLQEYNVGGK-VIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score =  144 bits (365), Expect = 6e-45
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 77

Query: 61 IQKESTLHLVLR 72
          +  +  +HLV R
Sbjct: 78 VGGK-VIHLVER 88

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 6e-46
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 65  STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 125 QLEDGRTLADYNIQKESTLHLVLRLRGG 152
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  146 bits (371), Expect = 6e-46
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 141 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200
                 L  RG MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG 
Sbjct: 8   HHHSSGLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGA 65

Query: 201 QLEDGRTLADYNIQKESTLHLVLRLRGG 228
            LED  TL    ++  +TL +  R+ GG
Sbjct: 66  PLEDEATLGQCGVEALTTLEVAGRMLGG 93

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score =  142 bits (359), Expect = 4e-44
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+FV+    +  T EV   +T+  +KA +   EGI P+ Q ++ AG  LED  TL    
Sbjct: 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 77

Query: 61 IQKESTLHLVLRLRGG 76
          ++  +TL +  R+ GG
Sbjct: 78 VEALTTLEVAGRMLGG 93

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 1e-45
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 134 DYNIQKESTLHLVLRL 149
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  145 bits (368), Expect = 1e-45
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
             GMQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+
Sbjct: 5   SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64

Query: 210 DYNIQKESTLHLVLRL 225
           DY+I   S L+LV++ 
Sbjct: 65  DYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score =  144 bits (365), Expect = 4e-45
 Identities = 29/73 (39%), Positives = 46/73 (63%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VK L G+  +L+V   + +  +K  + +K  +P  QQRL+F GK L DG+ L+DY+
Sbjct: 8  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 67

Query: 61 IQKESTLHLVLRL 73
          I   S L+LV++ 
Sbjct: 68 IGPNSKLNLVVKP 80

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 1e-44
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 76  GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 134 DYNIQKESTLHLVLRLRGG 152
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  143 bits (363), Expect = 1e-44
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)

Query: 152 GMQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           GM I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL 
Sbjct: 7   GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLF 66

Query: 210 DYNIQKESTLHLVLRLRGG 228
           DY++     + L++R   G
Sbjct: 67  DYDVGLNDIIQLLVRPDSG 85

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score =  142 bits (360), Expect = 3e-44
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 8  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 67

Query: 59 YNIQKESTLHLVLRLRGG 76
          Y++     + L++R   G
Sbjct: 68 YDVGLNDIIQLLVRPDSG 85

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 3e-44
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 73  LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 133 ADYNIQKESTLHLVLRLRG 151
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 3e-44
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           +   + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 209 ADYNIQKESTLHLVLRLRG 227
            +Y ++  ST+ + LRLRG
Sbjct: 61  GEYGLKPLSTVFMNLRLRG 79

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score =  142 bits (359), Expect = 3e-44
 Identities = 27/75 (36%), Positives = 43/75 (57%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 61 IQKESTLHLVLRLRG 75
          ++  ST+ + LRLRG
Sbjct: 65 LKPLSTVFMNLRLRG 79

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 7e-44
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1  MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
               T +L L+L GG +   K      
Sbjct: 60 ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  144 bits (365), Expect = 7e-44
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
                T +L L+L GG +   K      
Sbjct: 60  ----VTYYLSLKLLGGKKKKKKKSYTTK 83

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score =  141 bits (357), Expect = 1e-42
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQ+ VKTL G+T    +E   ++ ++K++I    G   D   L+  G    +   + D  
Sbjct: 1   MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD- 59

Query: 213 IQKESTLHLVLRLRGG 228
                T +L L+L GG
Sbjct: 60  ----VTYYLSLKLLGG 71

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (356), Expect = 1e-43
 Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGGG 229
           +Y I +++ + +++      
Sbjct: 61  EYKIDEKNFVVVMVTKPKAV 80

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (356), Expect = 2e-43
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGG 76
          +Y I +++ + +++     
Sbjct: 61 EYKIDEKNFVVVMVTKPKA 79

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score =  140 bits (356), Expect = 2e-43
 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ ++G    P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 3e-43
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKT 88
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  140 bits (355), Expect = 3e-43
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 1/88 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKT 164
           ++   T+HLV++ +          +G +
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECPASGPS 104

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score =  139 bits (351), Expect = 1e-42
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 18  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 213 IQKESTLHLVLRLRGGG 229
           ++   T+HLV++ +   
Sbjct: 77  VRDGLTVHLVIKRQHRA 93

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (353), Expect = 3e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3  MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 60 NIQKESTLHLVLR 72
          +IQ   ++HLV  
Sbjct: 63 HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (353), Expect = 3e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 136 NIQKESTLHLVLR 148
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score =  139 bits (353), Expect = 3e-43
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M + +   +G+    + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y
Sbjct: 3   MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 62

Query: 212 NIQKESTLHLVLR 224
           +IQ   ++HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (353), Expect = 4e-43
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 59
          M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 60 NIQKESTLHLVL 71
           I   S + L +
Sbjct: 71 QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (353), Expect = 4e-43
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 135
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 136 NIQKESTLHLVL 147
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score =  139 bits (353), Expect = 4e-43
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADY 211
           M+  V+ L G +  LEV+  DT+  VK KI+  + IP  +Q LI  G   L +  T+   
Sbjct: 11  MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 212 NIQKESTLHLVL 223
            I   S + L +
Sbjct: 71  QIVPTSDIQLEV 82

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  140 bits (354), Expect = 6e-43
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 57  ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  140 bits (354), Expect = 6e-43
 Identities = 21/96 (21%), Positives = 48/96 (50%)

Query: 133 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++  + +  + + +++          L G+ +   +  +D +  +K KI +  G+P  +
Sbjct: 16  EEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGK 75

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
           Q+L + G  ++D  +LA YN+   + +HL L+ R G
Sbjct: 76  QKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG 111

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score =  139 bits (352), Expect = 1e-42
 Identities = 21/75 (28%), Positives = 39/75 (52%)

Query: 2   QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
                 L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+
Sbjct: 37  DKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNM 96

Query: 62  QKESTLHLVLRLRGG 76
              + +HL L+ R G
Sbjct: 97  ASGAVIHLALKERSG 111

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  137 bits (346), Expect = 3e-42
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 75  GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 133 ADYNIQKESTLHLVLRL 149
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  137 bits (346), Expect = 3e-42
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 2/77 (2%)

Query: 151 GGMQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208
           G M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL
Sbjct: 1   GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60

Query: 209 ADYNIQKESTLHLVLRL 225
            DY ++   T+ L++R 
Sbjct: 61  FDYEVRLNDTIQLLVRQ 77

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score =  133 bits (337), Expect = 7e-41
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+       +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 3  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 62

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 63 YEVRLNDTIQLLVRQ 77

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  138 bits (348), Expect = 4e-42
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 120
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 121 FAGKQLEDGRTL 132
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  138 bits (348), Expect = 4e-42
 Identities = 79/132 (59%), Positives = 89/132 (67%), Gaps = 5/132 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196
           IQKESTLHLVLRLRGG+            +             A++  +      ++R  
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLK---ALASKYNCDKSVCRKCYARLPPRATNC--RKRKC 115

Query: 197 FAGKQLEDGRTL 208
               QL   + L
Sbjct: 116 GHTNQLRPKKKL 127

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score =  133 bits (335), Expect = 5e-40
 Identities = 73/75 (97%), Positives = 75/75 (100%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRG 227
           IQKESTLHLVLRLRG
Sbjct: 61  IQKESTLHLVLRLRG 75

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  136 bits (344), Expect = 1e-41
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 58  DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 116
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  136 bits (344), Expect = 1e-41
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 134 DYNIQKESTLHLVLRLRGG-MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 192
            ++       +L  +     M++ VKT   K     V  + ++   K +I  +     DQ
Sbjct: 6   HHHHHSSGRENLYFQGHPKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQ 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
             LIFAGK L+D  TL+ + I    T+HLV++
Sbjct: 65  LVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score =  135 bits (342), Expect = 2e-41
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M++ VKT   K     V  + ++   K +I  +     DQ  LIFAGK L+D  TL+ + 
Sbjct: 26 MKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHG 84

Query: 61 IQKESTLHLVLR 72
          I    T+HLV++
Sbjct: 85 IHDGLTVHLVIK 96

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  134 bits (338), Expect = 1e-40
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 213 IQKESTLHLVLRLRGGG 229
           ++   T+HLV++ +   
Sbjct: 82  VRDGLTVHLVIKRQHRA 98

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (337), Expect = 1e-40
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 82 VRDGLTVHLVIKRQ 95

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score =  133 bits (337), Expect = 1e-40
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 23  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 82  VRDGLTVHLVIKRQ 95

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  133 bits (336), Expect = 1e-40
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 58 DYNIQKESTLHLVL-RLRGG 76
          DY I +++ + +++ + + G
Sbjct: 66 DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  133 bits (336), Expect = 1e-40
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 133
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 134 DYNIQKESTLHLVL-RLRGG 152
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score =  133 bits (336), Expect = 1e-40
 Identities = 24/80 (30%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 209
           + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 6   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65

Query: 210 DYNIQKESTLHLVL-RLRGG 228
           DY I +++ + +++ + + G
Sbjct: 66  DYRIDEKNFVVVMVTKTKAG 85

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  133 bits (335), Expect = 5e-40
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLRLRGG 76
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  133 bits (335), Expect = 5e-40
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLRLRGG 152
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score =  133 bits (335), Expect = 5e-40
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLRLRGG 228
           I    T+HLV++    
Sbjct: 92  IHDGLTVHLVIKRDPN 107

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  131 bits (331), Expect = 1e-39
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 61 IQKESTLHLVLRLRGG 76
          I   ST+H+V+R   G
Sbjct: 77 ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  131 bits (331), Expect = 1e-39
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 137 IQKESTLHLVLRLRGG 152
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score =  131 bits (331), Expect = 1e-39
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 18  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 213 IQKESTLHLVLRLRGG 228
           I   ST+H+V+R   G
Sbjct: 77  ILDGSTVHVVVRSHSG 92

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (327), Expect = 5e-39
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2  VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 61 IQKESTLHLVLR 72
          ++    +  ++ 
Sbjct: 62 LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (327), Expect = 5e-39
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 137 IQKESTLHLVLR 148
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score =  129 bits (327), Expect = 5e-39
 Identities = 16/72 (22%), Positives = 37/72 (51%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +  K    + + L++E S+TI   K K+         Q +LI++GK L+D +T+++  
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 213 IQKESTLHLVLR 224
           ++    +  ++ 
Sbjct: 62  LKDGDQVVFMVS 73

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  122 bits (308), Expect = 3e-36
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 63  KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 123 GKQL-EDGRTLADYNIQKESTLHLVLRLRGGMQ 154
           G +L +D R L +Y I + S + + L+     +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  122 bits (307), Expect = 4e-36
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 198
                H        + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 199 GKQL-EDGRTLADYNIQKESTLHLVLR 224
           G +L +D R L +Y I + S + + L+
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLK 87

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score =  120 bits (302), Expect = 2e-35
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + VK    K  T+EV+ ++T+ ++K KI   E  P  + +L ++G +L +D R L +Y
Sbjct: 16 IHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74

Query: 60 NIQKESTLHLVLRLRGGMQ 78
           I + S + + L+     +
Sbjct: 75 GITEFSEIVVFLKSINRAK 93

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 3e-35
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 1   MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGGMQ 78
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  120 bits (302), Expect = 3e-35
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)

Query: 77  MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGGMQ 154
           YN+     L L LR R G  
Sbjct: 90  YNVGAGEILTLSLRERSGPS 109

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score =  119 bits (301), Expect = 4e-35
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 153 MQIFVKT-LTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  115 bits (288), Expect = 9e-31
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 207
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 208 LADYNIQKESTLHLVLRLRGGG 229
           + DY I +++ + +++     G
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAG 87

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  115 bits (287), Expect = 1e-30
 Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRT 131
             + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 132 LADYNIQKESTLHLVLRLRGGMQ 154
           + DY I +++ + +++      Q
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQ 88

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score =  113 bits (284), Expect = 3e-30
 Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 8  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 67

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          DY I +++ + +++      Q
Sbjct: 68 DYRIDEKNFVVVMVTKTKAGQ 88

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (262), Expect = 2e-29
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13 IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 61 IQKESTLHLV 70
          +   + L L+
Sbjct: 72 VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (262), Expect = 2e-29
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 137 IQKESTLHLV 146
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score =  104 bits (262), Expect = 2e-29
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VK   GK+I L V    T+ ++K+++Q    + P  Q+LIF GK L +  TL   +
Sbjct: 13  IKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 213 IQKESTLHLV 222
           +   + L L+
Sbjct: 72  VGSGAKLMLM 81

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 92.4 bits (229), Expect = 2e-24
 Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 76  GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 130
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 131 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
           +L  Y ++    + L+ +   G++   +T +G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.4 bits (224), Expect = 9e-24
 Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRT 55
          M I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 90.4 bits (224), Expect = 1e-23
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 152 GMQIFVKT----LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 206
           GM I V      LT  T +L+V     + N +   + + G+P ++ ++++  + L +D  
Sbjct: 7   GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66

Query: 207 TLADYNIQKESTLHLVLRLRGG 228
           +L  Y ++    + L+ +   G
Sbjct: 67  SLGSYGLKDGDMVVLLQKDNVG 88

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 84.0 bits (207), Expect = 3e-21
 Identities = 14/81 (17%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 208
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 209 ADYNIQKESTLHLVLRLRGGG 229
              ++ K ++L+++       
Sbjct: 66  KSLHLPKNNSLYVLTPDLPPP 86

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.6 bits (206), Expect = 4e-21
 Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 74  RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTL 132
            G M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L
Sbjct: 6   SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVL 65

Query: 133 ADYNIQKESTLHLVL 147
              ++ K ++L+++ 
Sbjct: 66  KSLHLPKNNSLYVLT 80

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 81.3 bits (200), Expect = 3e-20
 Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADY 59
          M  F      + + + +E + T+  +K  ++++  IP  +  L  +    +ED   L   
Sbjct: 9  MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSL 68

Query: 60 NIQKESTLHLVL 71
          ++ K ++L+++ 
Sbjct: 69 HLPKNNSLYVLT 80

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27 VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 61 IQKE-STLHLVL 71
          +++   + +L L
Sbjct: 87 VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 137 IQKE-STLHLVL 147
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 77.0 bits (189), Expect = 2e-18
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + +    +   TI L V    T+ ++K  +    G PP  Q+ +   +   D  TL  + 
Sbjct: 27  VSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHG 86

Query: 213 IQKE-STLHLVL 223
           +++   + +L L
Sbjct: 87  VRQNGDSAYLYL 98

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 1  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 59
          M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1  MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 60 NI-------QKESTLHLVLRLRGGMQ 78
                   Q  +T+ L  R     +
Sbjct: 61 GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 77  MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 136 NI-------QKESTLHLVLRLRGGMQ 154
                    Q  +T+ L  R     +
Sbjct: 61  GFTSQTARPQAPATVGLAFRADDTFE 86

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 68.5 bits (167), Expect = 3e-15
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           M +F+     K TI  + + S T+  +K  ++     PP++QRL    + L+DG+TL + 
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGEC 60

Query: 212 NI-------QKESTLHLVLRLRG 227
                    Q  +T+ L  R   
Sbjct: 61  GFTSQTARPQAPATVGLAFRADD 83

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.6 bits (157), Expect = 6e-14
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 75  GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 130
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 131 TLADYNIQKES--TLHLVLRLRGG 152
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.6 bits (157), Expect = 6e-14
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 151 GGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGR 206
            G+ + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 207 TLADYNIQKES--TLHLVLRLRGG 228
            L D   ++E    LHLV  ++ G
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKSG 89

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 64.2 bits (156), Expect = 6e-14
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)

Query: 1  MQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + VK+     + + L  +   ++ ++KA +     E   P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 8e-14
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 61 IQKESTLHLV 70
          +   + + +V
Sbjct: 76 VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 8e-14
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 137 IQKESTLHLV 146
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 64.0 bits (156), Expect = 8e-14
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + +         ++V    T   +K KI    G+PP  Q++++ G  + + +TL +  
Sbjct: 18  VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 213 IQKESTLHLV 222
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 65.0 bits (158), Expect = 9e-14
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 53 GRTLADYNIQKEST--LHLVLR 72
            TL    +    T  +HLV R
Sbjct: 78 NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 65.0 bits (158), Expect = 9e-14
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 129 GRTLADYNIQKEST--LHLVLR 148
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} Length = 125

 Score = 65.0 bits (158), Expect = 9e-14
 Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 18  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 77

Query: 205 GRTLADYNIQKEST--LHLVLR 224
             TL    +    T  +HLV R
Sbjct: 78  NVTLGALKLPFGKTTVMHLVAR 99

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.8 bits (155), Expect = 2e-13
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 151 GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 198
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 199 GKQLEDGRTLADYNIQKESTLHLVLRLRGGG 229
           G+  +  ++L D  ++    +H V    G  
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAVDVTGGNE 91

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 63.4 bits (154), Expect = 3e-13
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 75  GGMQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FA 122
           G M        T       +E    +  +++++K K++   G   D  R+          
Sbjct: 1   GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60

Query: 123 GKQLEDGRTLADYNIQKESTLHLV 146
           G+  +  ++L D  ++    +H V
Sbjct: 61  GELTDGAKSLKDLGVRDGYRIHAV 84

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 Length = 122

 Score = 60.7 bits (147), Expect = 3e-12
 Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 1  MQIFVK---TLTGKTITLE--VESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGK 48
          M        T       +E    +  +++++K K++   G   D  R+          G+
Sbjct: 3  MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGE 62

Query: 49 QLEDGRTLADYNIQKESTLHLV 70
            +  ++L D  ++    +H V
Sbjct: 63 LTDGAKSLKDLGVRDGYRIHAV 84

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 82 VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A Length = 93

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 16/69 (23%), Positives = 34/69 (49%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++    D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 22  IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 81

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 82  VHDQTNLEL 90

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 137 IQKESTLHLV 146
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 62.2 bits (151), Expect = 4e-13
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
             + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 213 IQKESTLHLV 222
           ++   T+ ++
Sbjct: 67  MKNGMTVLMM 76

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 8e-13
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 52
          + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53 GRTLADYNIQ--KESTLHLVLR 72
            TL    +   K + +HLV R
Sbjct: 77 NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 8e-13
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQ--KESTLHLVLR 148
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 116

 Score = 62.0 bits (150), Expect = 8e-13
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD-------KEGIP-PDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   + D       +E +  P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQ--KESTLHLVLR 224
             TL    +   K + +HLV R
Sbjct: 77  NVTLGALKLPFGKTTVMHLVAR 98

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 1  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 49
          +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17 VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 50 LEDGRTLADYNIQKESTLHLVLR 72
          L+D +TL  Y IQ  ST+H++ +
Sbjct: 77 LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 77  MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 125
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 126 LEDGRTLADYNIQKESTLHLVLR 148
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 60.2 bits (145), Expect = 3e-12
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 11/83 (13%)

Query: 153 MQIFVKTLTGKTITLEVE--------SSDTIDNVKAKIQDKEGI---PPDQQRLIFAGKQ 201
           +++  + L  K+I    E           +I  +K  I  K       P+   LI+ G++
Sbjct: 17  VKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 202 LEDGRTLADYNIQKESTLHLVLR 224
           L+D +TL  Y IQ  ST+H++ +
Sbjct: 77  LKDDQTLDFYGIQPGSTVHVLRK 99

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61 IQKESTLHL 69
          I     L L
Sbjct: 89 IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 137 IQKESTLHL 145
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 Length = 100

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 213 IQKESTLHL 221
           I     L L
Sbjct: 89  IHDGMNLEL 97

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLR 148
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLR 224
             NI     +H    
Sbjct: 63  SLNITNNCVIHCHRS 77

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 56.9 bits (137), Expect = 4e-11
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLR 72
          NI     +H    
Sbjct: 65 NITNNCVIHCHRS 77

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 56
          + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 57 AD--YNIQKESTLHLV 70
           D      +   +HLV
Sbjct: 84 KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 77  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 132
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 133 AD--YNIQKESTLHLV 146
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 153 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTL 208
           + + +K    K    T+    + T+  +K  + +          QRL+++G+ L D   L
Sbjct: 24  VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83

Query: 209 AD--YNIQKESTLHLV 222
            D      +   +HLV
Sbjct: 84  KDILRKQDEYHMVHLV 99

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 1  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 56
          + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8  LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 57 ADYNIQKESTLHLV 70
              ++  + + ++
Sbjct: 67 GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 77  MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLV 146
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 153 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           + I VK   G+  ++  +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 8   LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLV 222
               ++  + + ++
Sbjct: 67  GALKLKPNTKIMMM 80

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 197
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 198 AGKQL-EDGRTLADYNIQKESTLHLVLRLRGGG 229
           AG++L ED + L DY I+    +  + +L    
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQKS 100

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 75
          AG++L ED + L DY I+    +  + +L  
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 45.7 bits (108), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 16/91 (17%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 121
           M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 122 AGKQL-EDGRTLADYNIQKESTLHLVLRLRG 151
           AG++L ED + L DY I+    +  + +L  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 33/77 (42%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 213 IQKESTLHLVLRLRGGG 229
           ++ +  +  ++   GG 
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 61  IQKESTLHLVLRLRGGM 77
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 34/77 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +   ++S   +  +      K+GI  +  R +F G  +++ +T  +  
Sbjct: 27  VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELG 86

Query: 137 IQKESTLHLVLRLRGGM 153
           ++ +  +  ++   GG+
Sbjct: 87  MEDDDVIDAMVEQTGGL 103

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 56
          ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2  RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 57 ADYNIQKESTL 67
           D  IQ    L
Sbjct: 62 GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 132
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 133 ADYNIQKESTL 143
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} Length = 86

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTL 208
           ++  K   G  +   + S   +  ++ +I    GI P  QR++  +  + L+      TL
Sbjct: 2   RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL 61

Query: 209 ADYNIQKESTL 219
            D  IQ    L
Sbjct: 62  GDLPIQSGDML 72

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 58
            L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22 ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 59 YNIQKESTLHLV 70
          ++      LH++
Sbjct: 82 FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 134
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 135 YNIQKESTLHLV 146
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 97

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLAD 210
             L   +         +++ VK K+  K G   +   L              +D R L  
Sbjct: 22  ANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81

Query: 211 YNIQKESTLHLV 222
           ++      LH++
Sbjct: 82  FSPFDGFRLHII 93

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 64  ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 116
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 117 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 148
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 22/98 (22%)

Query: 140 ESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI-----QDKEGIP--PDQ 192
            + L +  RL  G  I  K             + T+  +K  +     ++KE  P    +
Sbjct: 14  HNQLEIKFRLTDGSDIGPKAFP---------DATTVSALKETVISEWPREKENGPKTVKE 64

Query: 193 QRLIFAGKQLEDGRTLADYNIQ------KESTLHLVLR 224
            +LI AGK LE+ +T+ DY           +T+H++++
Sbjct: 65  VKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQ 102

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 126

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 13/67 (19%)

Query: 19  SSDTIDNVKAKI-----QDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQ------KES 65
            + T+  +K  +     ++KE  P    + +LI AGK LE+ +T+ DY           +
Sbjct: 36  DATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVT 95

Query: 66  TLHLVLR 72
           T+H++++
Sbjct: 96  TMHVIIQ 102

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 13/78 (16%), Positives = 34/78 (43%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 213 IQKESTLHLVLRLRGGGF 230
           ++ E T+ +  +  GG +
Sbjct: 66  MEDEDTIDVFQQQTGGVY 83

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 61 IQKESTLHLVLRLRGGMQI 79
          ++ E T+ +  +  GG+ +
Sbjct: 66 MEDEDTIDVFQQQTGGVYL 84

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 13/79 (16%), Positives = 35/79 (44%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 6   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 65

Query: 137 IQKESTLHLVLRLRGGMQI 155
           ++ E T+ +  +  GG+ +
Sbjct: 66  MEDEDTIDVFQQQTGGVYL 84

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 66
          GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14 GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 67 L 67
          L
Sbjct: 74 L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 86  GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 142
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 143 L 143
           L
Sbjct: 74  L 74

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 162 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKEST 218
           GK   +++   DT++ ++ +I  K  + P++Q+L+   + GK   D   ++   ++    
Sbjct: 14  GKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFK 73

Query: 219 L 219
           L
Sbjct: 74  L 74

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 75  GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 128
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 129 GRTLADYNIQKESTLHLV 146
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 151 GGMQIFVKTLTGKTITLEVESSD-----TIDNVKAKIQDKEGIPPDQQRLIFAGKQL-ED 204
            G+ + V   + +   L V S        + ++   +++  G+P   Q+LIF GK L E 
Sbjct: 6   SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEM 64

Query: 205 GRTLADYNIQKESTLHLV 222
              L+   IQ    + L+
Sbjct: 65  ETPLSALGIQDGCRVMLI 82

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLV 70
          S   + ++   +++  G+P   Q+LIF GK L E    L+   IQ    + L+
Sbjct: 30 SEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 61 IQKESTLHLVLRLRGG 76
          +++E  + +     GG
Sbjct: 82 MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 137 IQKESTLHLVLRLRGG 152
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 14/76 (18%), Positives = 36/76 (47%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 22  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 81

Query: 213 IQKESTLHLVLRLRGG 228
           +++E  + +     GG
Sbjct: 82  MEEEDVIEVYQEQTGG 97

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 20 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 70
          S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28 SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 96  SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 146
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)

Query: 172 SDTIDNVKAKIQDKEGIPPDQQRLI-------FAGKQLEDGRTLADYNIQKESTLHLV 222
           S TI   K K++   G P     L        F  K  ++   L  Y +     +H++
Sbjct: 28  SLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 12/77 (15%), Positives = 32/77 (41%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 25  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84

Query: 213 IQKESTLHLVLRLRGGG 229
           ++ E T+ +  +   G 
Sbjct: 85  MEDEDTIDVFQQQTSGP 101

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 32/76 (42%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 25  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84

Query: 61  IQKESTLHLVLRLRGG 76
           ++ E T+ +  +   G
Sbjct: 85  MEDEDTIDVFQQQTSG 100

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 32/76 (42%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 25  INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 84

Query: 137 IQKESTLHLVLRLRGG 152
           ++ E T+ +  +   G
Sbjct: 85  MEDEDTIDVFQQQTSG 100

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Length = 94

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 13/77 (16%), Positives = 33/77 (42%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V    G  +  +++    +  +     +++G+   Q R  F G+ + +  T A   
Sbjct: 8   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 67

Query: 213 IQKESTLHLVLRLRGGG 229
           ++ E T+ +  +  GG 
Sbjct: 68  MEDEDTIDVFQQQTGGV 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.84
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.83
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.83
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.82
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.82
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.82
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.81
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.81
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.8
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.8
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.8
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.8
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.8
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.8
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.79
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.79
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.79
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.79
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.79
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.79
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.79
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.79
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.79
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.79
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.79
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.78
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.78
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.78
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.78
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.78
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.77
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.77
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.77
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.77
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.77
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.77
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.77
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.77
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.77
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.77
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.77
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.77
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.77
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.77
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.77
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.76
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.76
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.76
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.76
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.76
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.76
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.76
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.62
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.76
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.76
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.76
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.76
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.76
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.75
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.75
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.75
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.75
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.75
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.74
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.74
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.74
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.74
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.74
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.73
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.73
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.73
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.73
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.73
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.73
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.73
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.73
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.72
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.72
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.72
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.72
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.72
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.72
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.72
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.71
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.71
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.71
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.71
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.71
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.71
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.71
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.71
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.71
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.7
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.7
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.7
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.53
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.69
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.69
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.69
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.69
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.69
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.69
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.68
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.68
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.68
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.68
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.68
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.68
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.68
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.68
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.67
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.67
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.67
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.66
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.66
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.65
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.65
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.65
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.65
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.65
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.65
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.64
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.64
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.64
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.63
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.63
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.63
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.62
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.62
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.62
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.62
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.62
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.61
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.61
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.6
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.6
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.6
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.59
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.58
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.57
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.57
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.57
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.56
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.56
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.55
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.54
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.54
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.53
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.53
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.53
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.52
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.52
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.51
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.5
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.49
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.49
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.47
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.47
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.46
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.43
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.42
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.42
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.41
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.41
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.39
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.38
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.38
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.37
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.36
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.36
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.35
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.34
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.33
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.32
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.31
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.3
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.3
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.28
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.26
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.16
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.08
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.03
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.97
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.96
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.87
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.84
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.82
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.8
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.77
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.77
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.72
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.65
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.54
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.52
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.49
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.47
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	98.46
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.37
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.36
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.35
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	98.32
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.31
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.26
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.23
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	98.21
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.19
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	98.19
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.13
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	98.03
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.98
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.97
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.77
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	97.66
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.65
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.6
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.58
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.33
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.32
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.21
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	97.11
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	96.91
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.88
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	96.78
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.72
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.58
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	96.42
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	96.02
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	95.92
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	95.9
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	95.8
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.58
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.53
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	95.41
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	95.3
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.21
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	95.18
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	95.13
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	95.13
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	94.79
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	94.77
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	94.57
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	94.5
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	94.31
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	94.27
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	93.95
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.83
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	93.65
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	93.58
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	92.85
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	92.69
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	92.63
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	92.24
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	91.26
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	91.08
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	90.67
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	90.45
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	90.24
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	90.17
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	90.15
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	90.14
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	90.06
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	89.63
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	89.5
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	89.36
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	89.34
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	89.32
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	89.13
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	89.01
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	88.28
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	88.16
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	87.96
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	87.83
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	87.78
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	87.04
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	86.65
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	86.45
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	86.17
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	85.98
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	85.83
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	85.57
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	84.77
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	84.63
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	84.49
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	84.36
2c7h_A	86	RBBP6, retinoblastoma-binding protein 6, isoform 3	84.31
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	83.7
1wgk_A	114	Riken cDNA 2900073H19 protein; THis domain, ubiqut	83.58
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	82.82
1wgy_A	104	RAP guanine nucleotide exchange factor 5; ubiquiti	82.66
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	82.4
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	82.32
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	81.79
1wgy_A	104	RAP guanine nucleotide exchange factor 5; ubiquiti	81.48
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	80.99
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	80.83
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	80.69
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	80.65
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	80.43

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=3.5e-39  Score=242.10  Aligned_cols=153  Identities=34%  Similarity=0.497  Sum_probs=147.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-e-cCccccCCccccccccccCCeEEEEEE-ecCCe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM   77 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~-~g~~l~d~~~l~~~~i~~~~~i~l~~~-~~~~~   77 (230)
                      |+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++++.++ +++.|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999


Q ss_pred             eeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        78 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      +|+|++.+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++.||.
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~  158 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG  158 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988763

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=2.2e-38  Score=237.76  Aligned_cols=153  Identities=35%  Similarity=0.519  Sum_probs=147.1

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-e-cCcccCCCcchhhcccccCCceEEEEE-eecce
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM  153 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~-~g~~L~d~~~l~~~~i~~~~~i~l~~~-~~~~~  153 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+ | +|+.|+|+.+|++|+|.+|++|+++.+ ++++|
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m   82 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL   82 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence            78999999999999999999999999999999999999999999 9 799999999999999999999999999 58999


Q ss_pred             eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .++|+...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++|||
T Consensus        83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~  158 (159)
T 3rt3_B           83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG  158 (159)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=1.4e-38  Score=241.71  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=145.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++|.++
T Consensus        21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~  100 (172)
T 3u30_A           21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF  100 (172)
T ss_dssp             EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      |+..+|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus       101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A          101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999988775

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=8.8e-38  Score=237.26  Aligned_cols=155  Identities=94%  Similarity=1.292  Sum_probs=146.7

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+++
T Consensus        18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~   97 (172)
T 3u30_A           18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM   97 (172)
T ss_dssp             -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .++|+..+|+++.+++++++||++||++|+..+|+|++.|+|+|+|+.|+|+++|++|+|++|++|+|++|++||
T Consensus        98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A           98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=4.1e-37  Score=229.19  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=148.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++.+|+++++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..+.|.|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        81 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      |+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.++.||
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999988775

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=4.2e-36  Score=223.72  Aligned_cols=152  Identities=96%  Similarity=1.322  Sum_probs=148.0

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  156 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~  156 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++++++.+..+++.++
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          157 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       157 v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++.+|++||
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.84  E-value=6.8e-22  Score=139.21  Aligned_cols=101  Identities=74%  Similarity=0.991  Sum_probs=94.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      .+|+|+.++|+++++++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..++.+++.++
T Consensus        10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~   89 (114)
T 2kdi_A           10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG   89 (114)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred             EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             EE---ccCCcEEeeccCccCcHHH
Q 026933           81 VK---TLTGKTITLEVESSDTIDN  101 (230)
Q Consensus        81 v~---~~~g~~~~~~v~~~~tV~~  101 (230)
                      ++   ...|+++.+++.+++||++
T Consensus        90 ~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           90 AADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             ccccccccCceEEEEeccccccCC
Confidence            87   4568889999999888763

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=124.00  Aligned_cols=74  Identities=35%  Similarity=0.574  Sum_probs=71.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..
T Consensus         5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~   78 (79)
T 3phx_B            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR   78 (79)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred             EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999998764

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.83  E-value=1.9e-20  Score=124.52  Aligned_cols=70  Identities=23%  Similarity=0.433  Sum_probs=68.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|+|++..|+++++++.|++||++||++|+++.|+|+++|+|.|+|+.|+|+.||++|+|.++++++|.
T Consensus        22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999985

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.82  E-value=2e-20  Score=124.49  Aligned_cols=73  Identities=33%  Similarity=0.473  Sum_probs=70.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc-ccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~-l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+++.|++++++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||.+++++++.++|
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            8999999999999999999999999999999999999999999999999 999999999999999999998764

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.82  E-value=2.7e-20  Score=125.17  Aligned_cols=77  Identities=56%  Similarity=0.924  Sum_probs=72.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM   77 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~   77 (230)
                      |+|+|++++|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++.
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998876653

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.82  E-value=5.9e-20  Score=126.11  Aligned_cols=91  Identities=81%  Similarity=1.094  Sum_probs=74.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++.+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..++..++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~   80 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN   80 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998888898


Q ss_pred             EEccCCcEEee
Q 026933           81 VKTLTGKTITL   91 (230)
Q Consensus        81 v~~~~g~~~~~   91 (230)
                      .++.+|+.-.+
T Consensus        81 ~~~v~~~~~~~   91 (98)
T 1yx5_B           81 SSSVDKLAAAL   91 (98)
T ss_dssp             -----------
T ss_pred             cccCCCchhhh
Confidence            88887755433

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.81  E-value=3.1e-21  Score=135.80  Aligned_cols=104  Identities=73%  Similarity=0.983  Sum_probs=96.6

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      .+.++|+++..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.++.+|.
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEe---eecCceEEEEeeccccHHH
Q 026933          154 QIFVK---TLTGKTITLEVESSDTIDN  177 (230)
Q Consensus       154 ~i~v~---~~~~~~~~~~v~~~~tV~~  177 (230)
                      .++++   ...|+++++++.+.+||.+
T Consensus        87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           87 MGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             eeeccccccccCceEEEEeccccccCC
Confidence            88887   4468889999999888864

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.81  E-value=6.3e-20  Score=123.50  Aligned_cols=88  Identities=28%  Similarity=0.519  Sum_probs=71.5

Q ss_pred             ccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhccccc
Q 026933           60 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK  139 (230)
Q Consensus        60 ~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~  139 (230)
                      |..+++.+++.+..+..|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~   79 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G   79 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence            455678889988888899999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCceEEEEE
Q 026933          140 ESTLHLVLR  148 (230)
Q Consensus       140 ~~~i~l~~~  148 (230)
                      |++|+++.|
T Consensus        80 g~~i~lv~R   88 (88)
T 4eew_A           80 GKVIHLVER   88 (88)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999864

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.80  E-value=5.9e-20  Score=122.48  Aligned_cols=74  Identities=22%  Similarity=0.425  Sum_probs=70.0

Q ss_pred             CEEEEEccCCcEEEEEec--CCCcHHHHHHHh-hhhhCCCCCceeEEecCccccCCcccccccc-ccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~--~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~~   74 (230)
                      |+|+||++.|++++++|+  +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+++++++..++.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence            899999999999998766  999999999999 9999999999999999999999999999999 7999999998763

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.80  E-value=2.1e-19  Score=118.50  Aligned_cols=77  Identities=35%  Similarity=0.569  Sum_probs=74.3

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~  227 (230)
                      +.|.++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++|
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999886

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.80  E-value=2e-19  Score=117.56  Aligned_cols=75  Identities=56%  Similarity=0.935  Sum_probs=71.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G   75 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG   75 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987643

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.80  E-value=1.5e-19  Score=120.25  Aligned_cols=77  Identities=22%  Similarity=0.364  Sum_probs=70.6

Q ss_pred             EEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        71 ~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      ....+.|+|+|++..|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|++..
T Consensus        16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence            34456789999999999999999999999999999999999999999999999999999999999999999999863

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.80  E-value=1.5e-19  Score=121.55  Aligned_cols=77  Identities=57%  Similarity=0.968  Sum_probs=71.9

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      |.++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~   77 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG   77 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999996

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.80  E-value=2.5e-19  Score=120.59  Aligned_cols=88  Identities=28%  Similarity=0.519  Sum_probs=71.7

Q ss_pred             ccccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCC
Q 026933          136 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK  215 (230)
Q Consensus       136 ~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~  215 (230)
                      |..+++.++++++.+..|.++|+...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+| +
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~   79 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G   79 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence            456788888998888889999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             CCEEEEEEE
Q 026933          216 ESTLHLVLR  224 (230)
Q Consensus       216 g~~i~l~~~  224 (230)
                      |++|+++.|
T Consensus        80 g~~i~lv~R   88 (88)
T 4eew_A           80 GKVIHLVER   88 (88)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEEC
Confidence            999999875

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=2.3e-19  Score=118.00  Aligned_cols=73  Identities=36%  Similarity=0.643  Sum_probs=70.3

Q ss_pred             CEEEEEccCCcEE-EEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+++ +++ +++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus         3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            8999999999985 999 999999999999999999999999999999999999999999999999999998875

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.79  E-value=3.8e-19  Score=116.21  Aligned_cols=75  Identities=95%  Similarity=1.308  Sum_probs=72.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.+++.+
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G   75 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRG   75 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987654

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.79  E-value=2e-19  Score=121.74  Aligned_cols=73  Identities=92%  Similarity=1.257  Sum_probs=70.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++.
T Consensus        18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl   90 (91)
T 3v6c_B           18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   90 (91)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence            7999999999999999999999999999999999999999999999999999999999999999999998764

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.79  E-value=1.3e-19  Score=123.01  Aligned_cols=70  Identities=23%  Similarity=0.328  Sum_probs=68.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|+|+++.|+++.++|.|++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999986

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=2.8e-19  Score=120.21  Aligned_cols=75  Identities=87%  Similarity=1.259  Sum_probs=69.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.+
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G   84 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   84 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999887654

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.79  E-value=2.7e-19  Score=120.88  Aligned_cols=74  Identities=34%  Similarity=0.585  Sum_probs=71.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +++++|++++..+
T Consensus         6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~   79 (90)
T 4dwf_A            6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP   79 (90)
T ss_dssp             EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999 8999999987643

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.79  E-value=2.2e-19  Score=120.73  Aligned_cols=75  Identities=36%  Similarity=0.595  Sum_probs=70.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++..+..+
T Consensus         5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g   79 (88)
T 2hj8_A            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (88)
T ss_dssp             EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999887644

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.79  E-value=2e-19  Score=121.01  Aligned_cols=75  Identities=57%  Similarity=0.958  Sum_probs=72.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus        13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~G   87 (88)
T 3dbh_I           13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRG   87 (88)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999887643

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=3.1e-19  Score=122.44  Aligned_cols=75  Identities=97%  Similarity=1.322  Sum_probs=72.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+.++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus        23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~G   97 (98)
T 4hcn_B           23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   97 (98)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987654

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.79  E-value=3.3e-19  Score=119.17  Aligned_cols=75  Identities=80%  Similarity=1.153  Sum_probs=72.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+++++++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G   78 (85)
T 3n3k_B            4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG   78 (85)
T ss_dssp             CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988754

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.79  E-value=4.7e-19  Score=121.17  Aligned_cols=79  Identities=91%  Similarity=1.240  Sum_probs=73.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeee
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI   79 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v   79 (230)
                      |+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++...
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~   80 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL   80 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999988776543

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=3.6e-19  Score=119.70  Aligned_cols=80  Identities=85%  Similarity=1.267  Sum_probs=70.0

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF  230 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~~  230 (230)
                      .||+++++...|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++.+|++||+.
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~   87 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL   87 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999963

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.78  E-value=3.8e-19  Score=117.21  Aligned_cols=75  Identities=17%  Similarity=0.425  Sum_probs=72.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+++.++|++++||.+||.+|++..|+|+++|+|+|+|+.|+|+.||++|+|.+++++++.++..+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~G   78 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   78 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999987643

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=6.8e-19  Score=117.60  Aligned_cols=75  Identities=92%  Similarity=1.241  Sum_probs=72.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G   78 (85)
T 3mtn_B            4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG   78 (85)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999987654

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.78  E-value=6.4e-19  Score=118.28  Aligned_cols=76  Identities=34%  Similarity=0.532  Sum_probs=72.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|++.+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A            8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999887544

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.78  E-value=6.3e-19  Score=120.98  Aligned_cols=91  Identities=81%  Similarity=1.094  Sum_probs=74.2

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  156 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~  156 (230)
                      |+|+|+..+|+.+.+++++++||++||.+|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|+++.+..+|.+++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~   80 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN   80 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCceEEE
Q 026933          157 VKTLTGKTITL  167 (230)
Q Consensus       157 v~~~~~~~~~~  167 (230)
                      .+..+++.-.+
T Consensus        81 ~~~v~~~~~~~   91 (98)
T 1yx5_B           81 SSSVDKLAAAL   91 (98)
T ss_dssp             -----------
T ss_pred             cccCCCchhhh
Confidence            88877655433

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=7.8e-19  Score=117.31  Aligned_cols=78  Identities=79%  Similarity=1.159  Sum_probs=72.0

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .|.++|+..+++++.+++++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||+
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~   80 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG   80 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            367889998999999999999999999999999999999999999999999999999999999999999999999885

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.77  E-value=1e-18  Score=114.20  Aligned_cols=76  Identities=57%  Similarity=0.952  Sum_probs=71.5

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            5688998889999999999999999999999999999999999999999999999999999999999999999987

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.77  E-value=1e-18  Score=119.46  Aligned_cols=78  Identities=94%  Similarity=1.273  Sum_probs=73.3

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +|.++|+..+|+++.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~   78 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA   78 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999999986

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.77  E-value=6.5e-19  Score=118.51  Aligned_cols=78  Identities=58%  Similarity=0.980  Sum_probs=75.0

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ..|.++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||
T Consensus        11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            457889999999999999999999999999999999999999999999999999999999999999999999999998

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1e-18  Score=115.65  Aligned_cols=73  Identities=40%  Similarity=0.690  Sum_probs=70.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++
T Consensus         8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998764

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=1.3e-18  Score=117.36  Aligned_cols=76  Identities=37%  Similarity=0.627  Sum_probs=72.1

Q ss_pred             CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|++.+| +++.+ +|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++
T Consensus         8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            7999999999 79999 5999999999999999999999999999999999999999999999999999999887544

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=2e-18  Score=117.66  Aligned_cols=73  Identities=30%  Similarity=0.597  Sum_probs=70.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+.+.++|++++||.+||.+|+..   .|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~   76 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence            899999999999999999999999999999999   8999999999999999999999999999999999998764

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.77  E-value=9.3e-19  Score=118.90  Aligned_cols=75  Identities=28%  Similarity=0.461  Sum_probs=71.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|++++| +++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+ .+|++|||.+++++++.+++.++
T Consensus        16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg   91 (94)
T 2kan_A           16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR   91 (94)
T ss_dssp             EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred             EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence            7899999988 999999999999999999999999999999999999999999 99999999999999999887543

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.77  E-value=5.4e-19  Score=122.80  Aligned_cols=74  Identities=22%  Similarity=0.437  Sum_probs=70.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+||+++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998653

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.77  E-value=1.6e-18  Score=115.80  Aligned_cols=74  Identities=30%  Similarity=0.531  Sum_probs=69.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhh---hCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~---~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+++.++|++++||.+||++|+..   +|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..
T Consensus         6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~   82 (85)
T 2wyq_A            6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT   82 (85)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred             EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence            789999999999999999999999999999998   89999999999999999999999999999999999987653

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.77  E-value=1.1e-18  Score=118.91  Aligned_cols=73  Identities=21%  Similarity=0.423  Sum_probs=68.2

Q ss_pred             CEEEEEccCCcEEEE--EecCCCcHHHHHHHh-hhhhCCCCCceeEEecCccccCCcccccccc-ccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~--~v~~~~tv~~lK~~i-~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~   73 (230)
                      |+|+||++.|++|++  ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .++++++++++.
T Consensus        20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence            789999999998777  556999999999999 9999999999999999999999999999999 999999998754

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.77  E-value=1.4e-18  Score=121.78  Aligned_cols=75  Identities=96%  Similarity=1.311  Sum_probs=72.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+.++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus        36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G  110 (111)
T 3vdz_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  110 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999988654

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.77  E-value=1.9e-18  Score=112.90  Aligned_cols=76  Identities=95%  Similarity=1.320  Sum_probs=73.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |.++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|++..|+.||
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            5688998889999999999999999999999999999999999999999999999999999999999999999987

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.77  E-value=1.1e-18  Score=121.09  Aligned_cols=74  Identities=30%  Similarity=0.443  Sum_probs=71.0

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCcccccccccc-------CCeEEEEEE
Q 026933            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~-------~~~i~l~~~   72 (230)
                      |.||++...++ ++++++.+++||.+||++|+...|||+++|||+|+|+.|+|++||++|||..       ++++||.++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            89999999888 8899999999999999999999999999999999999999999999999999       999999988


Q ss_pred             ec
Q 026933           73 LR   74 (230)
Q Consensus        73 ~~   74 (230)
                      ..
T Consensus        81 ~~   82 (118)
T 4ajy_B           81 AD   82 (118)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.77  E-value=1.9e-18  Score=129.73  Aligned_cols=124  Identities=65%  Similarity=0.873  Sum_probs=93.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+.++..++.+-.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~   80 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET   80 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999998766555


Q ss_pred             EEcc-CC--cEEeeccCccCcHHHHHHHHhhHhCCC-CCCeEEEecCcccCC
Q 026933           81 VKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLED  128 (230)
Q Consensus        81 v~~~-~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d  128 (230)
                      |+.. .|  ..-.+.+.++.++.+-...    ..+. .+..++.|.-+.|.+
T Consensus        81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~----~~i~~~~~~~~~fsl~yl~~  128 (169)
T 3l0w_B           81 IKFVADGDIGSGSVIIKPFVDMEHPETS----IKLEMDQPVDLTFGAKYLLD  128 (169)
T ss_dssp             EEEEEECSSCEEEEEECCBCCSSCGGGC----BEEEESSCEEEEEEHHHHHH
T ss_pred             ccccccCcccceeEEEecCCCCCCcccc----eEEecCCcceEEEhHHHHHH
Confidence            5543 12  2345555555544221111    1111 133466676666654

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=1.3e-18  Score=115.65  Aligned_cols=75  Identities=32%  Similarity=0.456  Sum_probs=71.4

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcc-cCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~-L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ..|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+. |+|+.+|++|+|.+|++|++++++
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            468999999999999999999999999999999999999999999999999 999999999999999999998753

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.2e-18  Score=119.57  Aligned_cols=78  Identities=95%  Similarity=1.288  Sum_probs=74.6

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ..|.++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus        21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            347889999999999999999999999999999999999999999999999999999999999999999999999998

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.76  E-value=1e-18  Score=117.47  Aligned_cols=79  Identities=35%  Similarity=0.564  Sum_probs=71.3

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ..|.++|+...|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++..++.||+
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~   81 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL   81 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence            4578999998899999999999999999999999999999999999999999999999999999999999999999885

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=1.9e-18  Score=115.39  Aligned_cols=78  Identities=91%  Similarity=1.244  Sum_probs=74.2

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .|.++|+...|+++.+++++++||.+||++|++..++|+++|+|+|+|+.|+|+.+|++|+|++|++|++.+|++||+
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~   80 (85)
T 3mtn_B            3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG   80 (85)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999999885

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.76  E-value=1.2e-18  Score=119.24  Aligned_cols=75  Identities=17%  Similarity=0.425  Sum_probs=72.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|+++.++|.+++||.+||.+|++..|||+++|+|+|+|+.|+|+.||++|+|.++++|++.++..+
T Consensus        22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~G   96 (97)
T 1wyw_B           22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   96 (97)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999987643

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.76  E-value=1.4e-18  Score=114.52  Aligned_cols=76  Identities=18%  Similarity=0.448  Sum_probs=73.0

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |.++|+...|+++.+++++++||.+||++++++.|+|++.|+|+|+|+.|+|++||++|+|++|++|++.++++||
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999987

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=2.7e-18  Score=115.24  Aligned_cols=79  Identities=34%  Similarity=0.534  Sum_probs=75.6

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +.|.++|+...++++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++.+|++||.
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~   84 (87)
T 1wh3_A            6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            4588999998899999999999999999999999999999999999999999999999999999999999999999985

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.62  E-value=4.5e-20  Score=120.79  Aligned_cols=75  Identities=33%  Similarity=0.588  Sum_probs=72.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.+++.+
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987653

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=2.5e-18  Score=116.76  Aligned_cols=78  Identities=27%  Similarity=0.437  Sum_probs=73.9

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEEecCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ..+.++|+...+ ++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ ++|++|+|++|++|+|++|++||+
T Consensus        14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~   92 (94)
T 2kan_A           14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA   92 (94)
T ss_dssp             CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred             CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence            457889998777 899999999999999999999999999999999999999999 999999999999999999999997

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.76  E-value=1.7e-18  Score=117.46  Aligned_cols=73  Identities=36%  Similarity=0.599  Sum_probs=69.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++  |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.+
T Consensus        20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~G   92 (93)
T 2l7r_A           20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLG   92 (93)
T ss_dssp             CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCC
T ss_pred             EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            8999998  899999999999999999999999999999999999999999999999999999999999987654

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.76  E-value=3e-18  Score=112.27  Aligned_cols=72  Identities=33%  Similarity=0.559  Sum_probs=68.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+. +|+++.+++++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..++
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            6899999 99999999999999999999999999999999999999999999999999999999999997653

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.76  E-value=1.6e-18  Score=120.92  Aligned_cols=72  Identities=29%  Similarity=0.451  Sum_probs=68.7

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccc-------cCCeEEEEEE
Q 026933            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~-------~~~~i~l~~~   72 (230)
                      |+++|+...|+ +++++|.+++||.+||++|++.+|||+++|+|+|+|+.|+|+.||++|||.       .++++||.++
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            89999999887 599999999999999999999999999999999999999999999999999       7899999887

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.76  E-value=9e-19  Score=132.90  Aligned_cols=82  Identities=91%  Similarity=1.230  Sum_probs=78.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF   80 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~v~   80 (230)
                      |+|+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.+++.++..++
T Consensus       106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f  185 (189)
T 3q3f_A          106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF  185 (189)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred             eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999988877776


Q ss_pred             EE
Q 026933           81 VK   82 (230)
Q Consensus        81 v~   82 (230)
                      |+
T Consensus       186 vk  187 (189)
T 3q3f_A          186 TK  187 (189)
T ss_dssp             CC
T ss_pred             Ee
Confidence            64

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.75  E-value=2.4e-18  Score=120.63  Aligned_cols=92  Identities=80%  Similarity=1.052  Sum_probs=80.3

Q ss_pred             cccCCceEEEEEe--------ecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcc
Q 026933          137 IQKESTLHLVLRL--------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  208 (230)
Q Consensus       137 i~~~~~i~l~~~~--------~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L  208 (230)
                      +.+|+++++....        ...|.++|+...|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|
T Consensus        12 ~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL   91 (111)
T 2ojr_A           12 WIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL   91 (111)
T ss_dssp             SCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBT
T ss_pred             eecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH
Confidence            4455555554332        23588999988899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEEecCC
Q 026933          209 ADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       209 ~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ++|+|++|++|++.+|++||
T Consensus        92 ~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           92 SDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             TTTTCCTTCEEEEEECCCC-
T ss_pred             HHcCCCCCCEEEEEEeCCCC
Confidence            99999999999999999987

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=6.6e-18  Score=113.80  Aligned_cols=80  Identities=36%  Similarity=0.606  Sum_probs=75.0

Q ss_pred             cceeEEEeeecC-ceEEE-EeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          151 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~-~~~~~-~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ..|.++|+...| +++.+ ++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus         6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            457889999888 69999 5999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 026933          229 GF  230 (230)
Q Consensus       229 ~~  230 (230)
                      .+
T Consensus        86 ~~   87 (89)
T 1wy8_A           86 PS   87 (89)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.75  E-value=3.1e-18  Score=117.11  Aligned_cols=79  Identities=18%  Similarity=0.407  Sum_probs=75.4

Q ss_pred             ecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...|.++|+...|+++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|++||++|+|++|++|+++++++||
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            3447899999999999999999999999999999999999999999999999999999999999999999999999987

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.75  E-value=3.2e-18  Score=115.77  Aligned_cols=76  Identities=91%  Similarity=1.259  Sum_probs=72.5

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ...|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl   90 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   90 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence            3569999999999999999999999999999999999999999999999999999999999999999999998765

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=3.5e-18  Score=112.27  Aligned_cols=75  Identities=36%  Similarity=0.657  Sum_probs=70.6

Q ss_pred             CCeeeEEEccCCcEE-eec-cCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~-~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      +.|+|+|+..+|+.+ .++ +++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++++++
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            468999999999885 899 999999999999999999999999999999999999999999999999999998875

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.74  E-value=3.7e-18  Score=115.30  Aligned_cols=78  Identities=32%  Similarity=0.551  Sum_probs=72.6

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ..|+|+|+..+|+.+.++|++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+| +|++|+++.+++++.
T Consensus         4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~   81 (90)
T 4dwf_A            4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT   81 (90)
T ss_dssp             CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred             cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence            568999999999999999999999999999999999999999999999999999999999999 899999998876543

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.74  E-value=6.7e-18  Score=118.24  Aligned_cols=77  Identities=95%  Similarity=1.307  Sum_probs=73.6

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .|.++|+...|+++.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus        35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999987

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.74  E-value=3.7e-18  Score=113.74  Aligned_cols=74  Identities=22%  Similarity=0.425  Sum_probs=69.0

Q ss_pred             eeeEEEccCCcEEeeccC--ccCcHHHHHHHH-hhHhCCCCCCeEEEecCcccCCCcchhhccc-ccCCceEEEEEee
Q 026933           77 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR  150 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~--~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~~  150 (230)
                      |+|+|++.+|+++.++++  +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++.++.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence            789999999999988855  999999999999 9999999999999999999999999999999 7999999987653

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.74  E-value=3.6e-18  Score=115.92  Aligned_cols=77  Identities=38%  Similarity=0.647  Sum_probs=71.3

Q ss_pred             ecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       150 ~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...|.++|+.  |+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|++++|++||
T Consensus        17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            3457888887  7899999999999999999999999999999999999999999999999999999999999999987

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=4e-18  Score=115.62  Aligned_cols=71  Identities=23%  Similarity=0.307  Sum_probs=68.6

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      .|+|+|+++.|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.
T Consensus        28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            38999999999999999999999999999999999999999999999999999999999999999999886

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=5.2e-18  Score=117.91  Aligned_cols=73  Identities=29%  Similarity=0.536  Sum_probs=70.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+.
T Consensus        24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~   96 (106)
T 1ttn_A           24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ   96 (106)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998764

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=6e-18  Score=114.88  Aligned_cols=75  Identities=28%  Similarity=0.459  Sum_probs=69.9

Q ss_pred             CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhh--CCCCCceeEEecCccccCCcccccc--ccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~--gip~~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++.+|+  ++.+++++++||.+||++|++.+  |+|+++|+|+|+|+.|+|+.+|++|  +|.+++++||++++.
T Consensus         8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~   87 (93)
T 1wgd_A            8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK   87 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred             EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence            79999999998  67777889999999999999999  9999999999999999999999999  999999999988764


Q ss_pred             C
Q 026933           75 G   75 (230)
Q Consensus        75 ~   75 (230)
                      +
T Consensus        88 g   88 (93)
T 1wgd_A           88 S   88 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=2.1e-18  Score=118.46  Aligned_cols=76  Identities=24%  Similarity=0.385  Sum_probs=70.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC---------------ceeEEecCcccc-CCccccccccccC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~---------------~q~l~~~g~~l~-d~~~l~~~~i~~~   64 (230)
                      |+|+|++++|++++++|.+++||.+||++|++..++|+.               +|+|.|+|+.|. |+.+|++|||.++
T Consensus         8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g   87 (105)
T 1v2y_A            8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence            899999999999999999999999999999999999984               569999999996 6799999999999


Q ss_pred             CeEEEEEEecCC
Q 026933           65 STLHLVLRLRGG   76 (230)
Q Consensus        65 ~~i~l~~~~~~~   76 (230)
                      +++|++.+..+.
T Consensus        88 ~~l~lv~~lr~~   99 (105)
T 1v2y_A           88 DEVSFIKKLGQK   99 (105)
T ss_dssp             EEEEEEECSCSC
T ss_pred             CEEEEEehhccC
Confidence            999999877543

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.73  E-value=6.4e-18  Score=126.87  Aligned_cols=83  Identities=90%  Similarity=1.200  Sum_probs=75.9

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecceeEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF  156 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i~  156 (230)
                      |+|+|++.+|+.+.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++++.+|..-.
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~   80 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET   80 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999886555


Q ss_pred             Eee
Q 026933          157 VKT  159 (230)
Q Consensus       157 v~~  159 (230)
                      ++.
T Consensus        81 vkf   83 (169)
T 3l0w_B           81 IKF   83 (169)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=116.60  Aligned_cols=75  Identities=96%  Similarity=1.311  Sum_probs=72.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+++++++.++..+
T Consensus        36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~G  110 (111)
T 2ojr_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG  110 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999987653

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=8.7e-18  Score=115.41  Aligned_cols=74  Identities=35%  Similarity=0.490  Sum_probs=70.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus        23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence            78999999886 799999999999999999999999999999999999999999999999999999999987654

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.3e-17  Score=110.21  Aligned_cols=75  Identities=40%  Similarity=0.703  Sum_probs=71.2

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ..|+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++++++
T Consensus         6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999998764

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.73  E-value=1.4e-17  Score=114.56  Aligned_cols=73  Identities=33%  Similarity=0.450  Sum_probs=69.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+.. |+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++..+..
T Consensus        26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            78999999 89999999999999999999999999999999999999999999999999999999999988764

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.72  E-value=1.2e-17  Score=116.47  Aligned_cols=77  Identities=29%  Similarity=0.445  Sum_probs=69.8

Q ss_pred             eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCC-------CCCEEEEEEE
Q 026933          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~-------~g~~i~l~~~  224 (230)
                      |.++++...++ ++.+++++++||++||++|+.+.|+|++.|+|+|+|+.|+|+++|++|||+       ++++|+|.+|
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            34566666665 699999999999999999999999999999999999999999999999999       7999999999


Q ss_pred             ecCCCC
Q 026933          225 LRGGGF  230 (230)
Q Consensus       225 ~~~g~~  230 (230)
                       .||+|
T Consensus        81 -~~g~f   85 (118)
T 2fnj_B           81 -ADDTF   85 (118)
T ss_dssp             -SSSCB
T ss_pred             -CCCce
Confidence             77765

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.72  E-value=1.9e-17  Score=114.96  Aligned_cols=77  Identities=30%  Similarity=0.453  Sum_probs=69.8

Q ss_pred             eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCC-------CCEEEEEEE
Q 026933          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~-------g~~i~l~~~  224 (230)
                      |.++++...++ ++.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|++||++|||++       +++|+|.+|
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            34666766655 7899999999999999999999999999999999999999999999999999       999999999


Q ss_pred             ecCCCC
Q 026933          225 LRGGGF  230 (230)
Q Consensus       225 ~~~g~~  230 (230)
                      . +|+|
T Consensus        81 ~-~~~f   85 (118)
T 4ajy_B           81 A-DDTF   85 (118)
T ss_dssp             C-SSCC
T ss_pred             c-CCCc
Confidence            7 6665

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=3.9e-18  Score=117.35  Aligned_cols=92  Identities=32%  Similarity=0.524  Sum_probs=67.2

Q ss_pred             ccccccccccCCeEEEEEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchh
Q 026933           54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA  133 (230)
Q Consensus        54 ~~l~~~~i~~~~~i~l~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~  133 (230)
                      ...++|.|..  +..+.......+.|+|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus         8 ~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~   84 (101)
T 3m63_B            8 HPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE   84 (101)
T ss_dssp             -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred             CCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence            4577888874  444444555567888886 8899999999999999999999999999999999999999999999999


Q ss_pred             hcccccCCceEEEEE
Q 026933          134 DYNIQKESTLHLVLR  148 (230)
Q Consensus       134 ~~~i~~~~~i~l~~~  148 (230)
                      +|||++|++|+++.+
T Consensus        85 ~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           85 SYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTCCTTEEEEECCC
T ss_pred             HCCCCCCCEEEEEeC
Confidence            999999999988754

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.5e-17  Score=112.90  Aligned_cols=80  Identities=29%  Similarity=0.469  Sum_probs=73.0

Q ss_pred             cceeEEEeeecCc--eEEEEeeccccHHHHHHHhchhc--CCCCCceEEEECCeecCCCCccccc--CCCCCCEEEEEEE
Q 026933          151 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~--~~~~~v~~~~tV~~LK~~i~~~~--gi~~~~~~L~~~g~~L~d~~~L~~~--~i~~g~~i~l~~~  224 (230)
                      ..|.++|+...++  ++.+++++++||.+||++|++.+  ++|+++|+|+|+|+.|+|+.+|++|  +|++|++|+|+++
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence            3477888888887  56777779999999999999998  9999999999999999999999999  9999999999999


Q ss_pred             ecCCCC
Q 026933          225 LRGGGF  230 (230)
Q Consensus       225 ~~~g~~  230 (230)
                      ++||+.
T Consensus        86 ~~gg~~   91 (93)
T 1wgd_A           86 VKSGPS   91 (93)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            999874

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.72  E-value=2.4e-17  Score=110.05  Aligned_cols=77  Identities=29%  Similarity=0.494  Sum_probs=70.8

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhH---hCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      +..|+|+|+..+|+.+.+++++++||++||++|++.   .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+.+
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~   82 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT   82 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence            357899999999999999999999999999999998   78999999999999999999999999999999999987654

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=2.1e-17  Score=112.07  Aligned_cols=72  Identities=24%  Similarity=0.309  Sum_probs=63.6

Q ss_pred             eEEEccC----CcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           79 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        79 v~v~~~~----g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      +.|+..+    ++.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++| +++++++
T Consensus        18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg   93 (100)
T 1wju_A           18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ   93 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred             EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence            4444444    6789999999999999999999999999999999999999999999999999999999 5555543

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.72  E-value=6.8e-18  Score=115.35  Aligned_cols=74  Identities=27%  Similarity=0.349  Sum_probs=70.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+.. |+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..+
T Consensus        18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~   91 (96)
T 1wx8_A           18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS   91 (96)
T ss_dssp             EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred             EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence            78999999 999999999999999999999999999999999999999999999999999999999999877643

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=2.4e-17  Score=111.77  Aligned_cols=74  Identities=23%  Similarity=0.304  Sum_probs=66.5

Q ss_pred             EEEeeec----CceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          155 IFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       155 i~v~~~~----~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +.|+..+    ++.+++++++++||.+||++|+++.|+|++.|+|+|+|+.|+|++||++|+|++|++| ++++++|..
T Consensus        18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~   95 (100)
T 1wju_A           18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSS   95 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCC
T ss_pred             EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCC
Confidence            4444444    6789999999999999999999999999999999999999999999999999999999 777777654

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.71  E-value=1.6e-17  Score=113.06  Aligned_cols=77  Identities=19%  Similarity=0.409  Sum_probs=69.9

Q ss_pred             cCCeeeEEEccCCcEEee--ccCccCcHHHHHHHH-hhHhCCCCCCeEEEecCcccCCCcchhhccc-ccCCceEEEEEe
Q 026933           74 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL  149 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~--~v~~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~~  149 (230)
                      ...|+|+|++.+|+.+.+  ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence            457999999999998777  566999999999999 8888999999999999999999999999999 999999999765


Q ss_pred             e
Q 026933          150 R  150 (230)
Q Consensus       150 ~  150 (230)
                      +
T Consensus        97 p   97 (98)
T 4a20_A           97 N   97 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.4e-17  Score=111.55  Aligned_cols=74  Identities=30%  Similarity=0.585  Sum_probs=70.3

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhH---hCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++.   .|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~   77 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence            789999999999999999999999999999999   78999999999999999999999999999999999988654

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.71  E-value=2.9e-17  Score=112.23  Aligned_cols=73  Identities=23%  Similarity=0.240  Sum_probs=68.1

Q ss_pred             CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCcccccccc-ccCCeEEEEEEe
Q 026933            1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i-~~~~~i~l~~~~   73 (230)
                      |+|+|+...+  .+++++|.|++||++||++|++.+||||++|||++.|+.++|+.||++||| .+++++||.+..
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            6899999875  799999999999999999999999999999999999999999999999999 599999998743

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.71  E-value=1.6e-17  Score=116.46  Aligned_cols=76  Identities=33%  Similarity=0.468  Sum_probs=71.6

Q ss_pred             CEEEEEcc---CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~---~g~~~~~~v~~-~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|+++   +|+++.++|++ ++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++++.++..++
T Consensus        28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG  107 (111)
T 1we6_A           28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            68999998   89999999998 999999999999999999999999999999999999999999999999999876543

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.4e-17  Score=115.60  Aligned_cols=75  Identities=21%  Similarity=0.426  Sum_probs=70.0

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      |+|+|+..+|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++...
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~   76 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999987543

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.71  E-value=6.9e-19  Score=126.49  Aligned_cols=76  Identities=97%  Similarity=1.333  Sum_probs=0.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|++++|++++++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++.++..++
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG   76 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (128)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999876543

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=4e-17  Score=114.14  Aligned_cols=74  Identities=24%  Similarity=0.419  Sum_probs=67.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCC--CCCceeEEecCccccCCccccccccccC--CeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gi--p~~~q~l~~~g~~l~d~~~l~~~~i~~~--~~i~l~   70 (230)
                      |+|+|+++.|++++++|.+++||.+||++|++      ..|+  |+++|+|+|.|+.|+|+.+|++|+|..+  +++||+
T Consensus        17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv   96 (116)
T 1wgh_A           17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            78999999999999999999999999999999      5675  6999999999999999999999999765  578888


Q ss_pred             EEec
Q 026933           71 LRLR   74 (230)
Q Consensus        71 ~~~~   74 (230)
                      +++.
T Consensus        97 lr~~  100 (116)
T 1wgh_A           97 ARET  100 (116)
T ss_dssp             ECSS
T ss_pred             ccCC
Confidence            7764

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.8e-17  Score=116.58  Aligned_cols=74  Identities=31%  Similarity=0.405  Sum_probs=69.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+.. |+++.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..+
T Consensus        33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g  106 (125)
T 1j8c_A           33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP  106 (125)
T ss_dssp             EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred             EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            78999999 999999999999999999999999999999999999999999999999999999999999887643

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.70  E-value=2.5e-17  Score=115.40  Aligned_cols=80  Identities=33%  Similarity=0.455  Sum_probs=75.3

Q ss_pred             ecceeEEEeee---cCceEEEEeec-cccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEe
Q 026933          150 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       150 ~~~~~i~v~~~---~~~~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      ++.+.++|+..   .|+.+.+++++ ++||++||++|+...|+|++.|+|+|+|+.|+|+++|++|+|++|++|+|.+|+
T Consensus        25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~  104 (111)
T 1we6_A           25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred             CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence            45678888887   78899999998 999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 026933          226 RGGG  229 (230)
Q Consensus       226 ~~g~  229 (230)
                      +||.
T Consensus       105 ~GGk  108 (111)
T 1we6_A          105 RSGP  108 (111)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9985

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.70  E-value=1.4e-17  Score=126.41  Aligned_cols=84  Identities=90%  Similarity=1.211  Sum_probs=80.1

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeeccee
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ  154 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~  154 (230)
                      -.|+|+|++.+|+++.++|++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++.+|..
T Consensus       104 ~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~  183 (189)
T 3q3f_A          104 YGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ  183 (189)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred             cceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             EEEe
Q 026933          155 IFVK  158 (230)
Q Consensus       155 i~v~  158 (230)
                      ++++
T Consensus       184 ~fvk  187 (189)
T 3q3f_A          184 TFTK  187 (189)
T ss_dssp             CCCC
T ss_pred             ceEe
Confidence            7665

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.70  E-value=3.9e-17  Score=113.53  Aligned_cols=74  Identities=35%  Similarity=0.490  Sum_probs=69.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|+..+|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..+..+
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            78999999886 799999999999999999999999999999999999999999999999999999999987643

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.53  E-value=1.1e-18  Score=114.02  Aligned_cols=75  Identities=33%  Similarity=0.588  Sum_probs=71.7

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      |+|+|+..+|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++++++++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            689999999999999999999999999999999999999999999999999999999999999999999988764

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.69  E-value=6e-17  Score=105.98  Aligned_cols=71  Identities=34%  Similarity=0.574  Sum_probs=67.8

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      |+|+|+. +|+.+.+++++++||++||.+|++..|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++..+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            7899998 8999999999999999999999999999999999999999999999999999999999998754

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=2.9e-17  Score=113.34  Aligned_cols=74  Identities=19%  Similarity=0.372  Sum_probs=68.7

Q ss_pred             CEEEEEccCC----cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g----~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|++..|    ++++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++++..+..
T Consensus         8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~   86 (102)
T 1v5o_A            8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred             EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence            7899999754    7999999999999999999999999999999999999999988 799999999999999987654

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.69  E-value=1.6e-18  Score=127.34  Aligned_cols=75  Identities=97%  Similarity=1.322  Sum_probs=0.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|++++++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+.+|++|+|.++++|++.+++.+
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~G   75 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   75 (152)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988754

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.69  E-value=8.9e-17  Score=113.34  Aligned_cols=75  Identities=27%  Similarity=0.469  Sum_probs=68.7

Q ss_pred             CEEEEEccCCcEE-EEEecCCCcHHHHHHHh-----hhhhCCCC--CceeEEecCccccCCccccccccccC------Ce
Q 026933            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST   66 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i-----~~~~gip~--~~q~l~~~g~~l~d~~~l~~~~i~~~------~~   66 (230)
                      |+|+|++++|+.+ ++++++++||.+||++|     ++..|+|+  ++|+|+|+|+.|+|+.||++|+|..+      ++
T Consensus        17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t   96 (126)
T 1se9_A           17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   96 (126)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence            6899999999888 79999999999999999     67789997  79999999999999999999999988      67


Q ss_pred             EEEEEEecC
Q 026933           67 LHLVLRLRG   75 (230)
Q Consensus        67 i~l~~~~~~   75 (230)
                      +|+++++.+
T Consensus        97 mhlVlrl~g  105 (126)
T 1se9_A           97 MHVIIQAPV  105 (126)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEeccCC
Confidence            888888754

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.69  E-value=1.1e-16  Score=112.72  Aligned_cols=69  Identities=29%  Similarity=0.603  Sum_probs=66.7

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .|+++.+++++++||.+||++|+...|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|++||.
T Consensus        44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk  112 (115)
T 1we7_A           44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP  112 (115)
T ss_dssp             SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence            478899999999999999999999999999999999999999999999999999999999999999996

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.69  E-value=7.6e-17  Score=114.27  Aligned_cols=74  Identities=24%  Similarity=0.403  Sum_probs=67.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh------hhCCC--CCceeEEecCccccCCccccccccccCC--eEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~------~~gip--~~~q~l~~~g~~l~d~~~l~~~~i~~~~--~i~l~   70 (230)
                      |.|+|+++.|++++++|.+++||++||++|++      ..|+|  +++|+|+|+|+.|+|+.||++|+|..++  ++|++
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv   97 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   97 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            68999999999999999999999999999999      77885  8999999999999999999999999666  67888


Q ss_pred             EEec
Q 026933           71 LRLR   74 (230)
Q Consensus        71 ~~~~   74 (230)
                      +++.
T Consensus        98 ~r~~  101 (125)
T 2gow_A           98 ARET  101 (125)
T ss_dssp             ECSC
T ss_pred             ecCC
Confidence            7764

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.7e-17  Score=114.07  Aligned_cols=93  Identities=31%  Similarity=0.514  Sum_probs=66.7

Q ss_pred             CcchhhcccccCCceEEEEEeecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcc
Q 026933          129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL  208 (230)
Q Consensus       129 ~~~l~~~~i~~~~~i~l~~~~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L  208 (230)
                      ..++++|.|..  +.++..+....+.+.|+. .|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus         7 ~~~~~~~~~~~--t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL   83 (101)
T 3m63_B            7 HHPMSDYDIPT--TENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV   83 (101)
T ss_dssp             ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred             cCCccccCCCc--ceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence            34678888754  444544444456677776 888999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCEEEEEEE
Q 026933          209 ADYNIQKESTLHLVLR  224 (230)
Q Consensus       209 ~~~~i~~g~~i~l~~~  224 (230)
                      ++|||++|++|+|+.+
T Consensus        84 ~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           84 ESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTTCCTTEEEEECCC
T ss_pred             HHCCCCCCCEEEEEeC
Confidence            9999999999998764

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=2.7e-17  Score=112.98  Aligned_cols=77  Identities=25%  Similarity=0.396  Sum_probs=70.9

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC---------------CCeEEEecCcccC-CCcchhhccccc
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQK  139 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---------------~~q~L~~~g~~L~-d~~~l~~~~i~~  139 (230)
                      .|+|+|+..+|+.++++|++++||++||++|+++.++|+               +.|+|+|+|+.|. |+.+|++|||++
T Consensus         7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~   86 (105)
T 1v2y_A            7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN   86 (105)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred             cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence            499999999999999999999999999999999999887               4579999999996 679999999999


Q ss_pred             CCceEEEEEeecc
Q 026933          140 ESTLHLVLRLRGG  152 (230)
Q Consensus       140 ~~~i~l~~~~~~~  152 (230)
                      |++|+++.++.+.
T Consensus        87 g~~l~lv~~lr~~   99 (105)
T 1v2y_A           87 RDEVSFIKKLGQK   99 (105)
T ss_dssp             SEEEEEEECSCSC
T ss_pred             CCEEEEEehhccC
Confidence            9999999887654

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=110.05  Aligned_cols=80  Identities=30%  Similarity=0.367  Sum_probs=72.2

Q ss_pred             EEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        71 ~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      +.....|+|+|+.. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+++.+++
T Consensus        20 ~~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~   98 (101)
T 2klc_A           20 QGHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ   98 (101)
T ss_dssp             ---CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred             CCCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence            33456799999988 88899999999999999999999999999999999999999999999999999999999988765


Q ss_pred             c
Q 026933          151 G  151 (230)
Q Consensus       151 ~  151 (230)
                      +
T Consensus        99 ~   99 (101)
T 2klc_A           99 N   99 (101)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.68  E-value=4.8e-17  Score=111.02  Aligned_cols=70  Identities=24%  Similarity=0.382  Sum_probs=64.5

Q ss_pred             CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhh-hCCCC-CceeEEecCccccCCcccccc--ccccCCeEEEE
Q 026933            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~-~gip~-~~q~l~~~g~~l~d~~~l~~~--~i~~~~~i~l~   70 (230)
                      |+|+||+++|+  ++++++++++||.+||++|++. .|+|| ++|+|+|+|+.|+|+.+|++|  +|.++++++|+
T Consensus        24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            78999999998  6799999999999999999996 56665 999999999999999999999  99999999873

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.2e-16  Score=109.61  Aligned_cols=78  Identities=33%  Similarity=0.438  Sum_probs=72.2

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ..|.++|+...++ +.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.++++|-
T Consensus        21 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p   98 (100)
T 1yqb_A           21 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   98 (100)
T ss_dssp             TEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred             CeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence            4478888888776 79999999999999999999999999999999999999999999999999999999999988763

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.68  E-value=1.2e-16  Score=106.48  Aligned_cols=70  Identities=29%  Similarity=0.452  Sum_probs=65.9

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      ++++.++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++++...
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            4667889999999999999999999999999999999999999999999999999999999999988754

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.68  E-value=6.9e-17  Score=108.86  Aligned_cols=72  Identities=21%  Similarity=0.412  Sum_probs=68.2

Q ss_pred             CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEE---ecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+. .|+++.+ ++++++||.+||++|++.+|||+++|+|+   |+|+.|+|+.+|++|+|.++++++|+..+
T Consensus         8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            7899995 7999999 99999999999999999999999999999   99999999999999999999999997654

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=4.6e-17  Score=111.17  Aligned_cols=77  Identities=27%  Similarity=0.337  Sum_probs=72.9

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .|.++|+.. ++.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|+++.++.||.
T Consensus        17 ~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~   93 (96)
T 1wx8_A           17 IIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP   93 (96)
T ss_dssp             EEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred             cEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence            367888887 88999999999999999999999999999999999999999999999999999999999999999875

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=7.9e-17  Score=109.72  Aligned_cols=71  Identities=17%  Similarity=0.305  Sum_probs=66.6

Q ss_pred             CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+ ..|+++ .++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+ +|++|+|.++++++|+...
T Consensus         8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence            689999 479999 6999999999999999999999999999999999999999 9999999999999997654

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1.8e-16  Score=110.06  Aligned_cols=79  Identities=27%  Similarity=0.455  Sum_probs=74.0

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ..|.++|+...|+++.+++++++||++||++|+...|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+...++
T Consensus        22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~  100 (106)
T 1ttn_A           22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN  100 (106)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence            4478899998999999999999999999999999999999999999999999999999999999999999999876654

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=2.6e-16  Score=112.18  Aligned_cols=77  Identities=30%  Similarity=0.373  Sum_probs=68.7

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .|.++|+.. ++.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+++|++|+|++|++|+|+.+..||.
T Consensus        32 ~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~  108 (125)
T 1j8c_A           32 IIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS  108 (125)
T ss_dssp             CEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred             cEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence            467888887 88999999999999999999999999999999999999999999999999999999999999998875

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.66  E-value=6.5e-18  Score=124.11  Aligned_cols=77  Identities=97%  Similarity=1.344  Sum_probs=0.0

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      |+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++++.|||
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg   77 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   77 (152)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence            46788988999999999999999999999999999999999999999999999999999999999999999999996

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.66  E-value=7.9e-18  Score=120.94  Aligned_cols=77  Identities=96%  Similarity=1.296  Sum_probs=0.6

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      |+++|+..+|+++.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++++.||.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~   77 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI   77 (128)
T ss_dssp             ----------------------------------------------------------------------------C
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence            46788888999999999999999999999999999999999999999999999999999999999999999999985

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=109.04  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-cCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |.++++.+.|++++++|++++||.+||++|++.+||||++|+|++ .+..|+|+.+|++|+|.+++++|++++.
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence            677888999999999999999999999999999999999999985 4444999999999999999999998765

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=4.4e-16  Score=108.18  Aligned_cols=76  Identities=34%  Similarity=0.475  Sum_probs=71.0

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      |.++|+...++ +.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+|+.++.+|.
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~   93 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   93 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence            67888887775 78999999999999999999999999999999999999999999999999999999999988773

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.65  E-value=4.2e-16  Score=109.83  Aligned_cols=68  Identities=29%  Similarity=0.620  Sum_probs=65.2

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      +|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++.+|
T Consensus        44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GG  111 (115)
T 1we7_A           44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSG  111 (115)
T ss_dssp             SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSC
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999998876

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=4e-16  Score=109.05  Aligned_cols=78  Identities=23%  Similarity=0.362  Sum_probs=68.6

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhh------HhCC--CCCCeEEEecCcccCCCcchhhcccccC--Cce
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL  143 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~~i--~~~~q~L~~~g~~L~d~~~l~~~~i~~~--~~i  143 (230)
                      ...|.|+|++..|+++.+++++++||++||++|++      +.++  |+++|+|+|.|+.|+|+.+|++|+|..+  +++
T Consensus        14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl   93 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence            45689999999999999999999999999999999      4464  6999999999999999999999999866  567


Q ss_pred             EEEEEeec
Q 026933          144 HLVLRLRG  151 (230)
Q Consensus       144 ~l~~~~~~  151 (230)
                      |+++++..
T Consensus        94 hLvlr~~~  101 (116)
T 1wgh_A           94 HLVARETL  101 (116)
T ss_dssp             EEEECSSC
T ss_pred             EEEccCCC
Confidence            77776543

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=2.8e-16  Score=109.27  Aligned_cols=74  Identities=28%  Similarity=0.401  Sum_probs=68.6

Q ss_pred             CEEEEEccCC---cEEEEEecC---------CCcHHHHHHHhhhhh--CCCCCc-eeEEecCccccCCccccccccccCC
Q 026933            1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES   65 (230)
Q Consensus         1 m~v~v~~~~g---~~~~~~v~~---------~~tv~~lK~~i~~~~--gip~~~-q~l~~~g~~l~d~~~l~~~~i~~~~   65 (230)
                      |+|+||..+|   +.+.+++++         ++||.+||++|+..+  |+|+++ |+|+|+|+.|+|+.+|++|+|.+++
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~   92 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS   92 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence            7899999999   899999554         599999999999999  999999 9999999999999999999999999


Q ss_pred             eEEEEEEec
Q 026933           66 TLHLVLRLR   74 (230)
Q Consensus        66 ~i~l~~~~~   74 (230)
                      ++|++.+..
T Consensus        93 ~i~lv~~~~  101 (107)
T 1x1m_A           93 TVHVLRKSW  101 (107)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEeCCC
Confidence            999987653

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.65  E-value=9e-16  Score=108.20  Aligned_cols=79  Identities=25%  Similarity=0.420  Sum_probs=70.8

Q ss_pred             cceeEEEeeecCceE-EEEeeccccHHHHHHHhc-----hhcCCCC--CceEEEECCeecCCCCcccccCCCCC------
Q 026933          151 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------  216 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~-~~~v~~~~tV~~LK~~i~-----~~~gi~~--~~~~L~~~g~~L~d~~~L~~~~i~~g------  216 (230)
                      .-+.+.++..+|+.+ ++++++++||++||++|+     ...|+|+  ++|+|+|.|+.|+|++||++|+|+.|      
T Consensus        15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v   94 (126)
T 1se9_A           15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV   94 (126)
T ss_dssp             CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred             ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence            347889999999888 799999999999999994     4557886  79999999999999999999999998      


Q ss_pred             CEEEEEEEecCCC
Q 026933          217 STLHLVLRLRGGG  229 (230)
Q Consensus       217 ~~i~l~~~~~~g~  229 (230)
                      ++++|++++.||+
T Consensus        95 ~tmhlVlrl~g~~  107 (126)
T 1se9_A           95 TTMHVIIQAPVTE  107 (126)
T ss_dssp             EEEEEEECCCSSC
T ss_pred             EEEEEEeccCCcc
Confidence            7899999999875

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=3.7e-16  Score=106.43  Aligned_cols=71  Identities=25%  Similarity=0.364  Sum_probs=67.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCC-ccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~-~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+|+..+|+.+.++|++++||.+||.+|+...   +++|+|+|+|+.|+|+ .+|++|+|.++++||+.++..
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~   79 (95)
T 1wia_A            8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence            7899999999999999999999999999999998   8899999999999999 999999999999999987653

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=1.8e-16  Score=107.79  Aligned_cols=70  Identities=21%  Similarity=0.378  Sum_probs=64.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|+ ..|+++.+++++++||.+||++|+..+|||+++|+|+|+|+.|+| .+|++|+|.++++|+|+..
T Consensus        18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence            678898 579999999999999999999999999999999999999999954 5999999999999998754

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=4.5e-16  Score=105.36  Aligned_cols=72  Identities=24%  Similarity=0.433  Sum_probs=66.5

Q ss_pred             CEEEEEccCCcEEEEEecCC-----CcHHHHHHHhhhhhCCCCCceeEEecCccccC-CccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~-----~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d-~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|+. .|+.+.++++++     +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|.++++|++....
T Consensus         8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~   85 (92)
T 1wxv_A            8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   85 (92)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence            6899998 589999999996     99999999999999999999999999999998 568999999999999997654

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=3.3e-16  Score=104.73  Aligned_cols=69  Identities=23%  Similarity=0.303  Sum_probs=63.5

Q ss_pred             CEEEEEccCCcEE--EE-EecCCCcHHHHHHHhhhh-hCCCCCceeEEec--CccccCCccccccccccCCeEEE
Q 026933            1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         1 m~v~v~~~~g~~~--~~-~v~~~~tv~~lK~~i~~~-~gip~~~q~l~~~--g~~l~d~~~l~~~~i~~~~~i~l   69 (230)
                      |+|+|+++.|+.+  ++ +|+|++||.+||++|++. .|+||++|+|.|.  |+.|+|+.+|++|+|.+++++++
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            7899999998765  58 999999999999999994 8999999999976  89999999999999999998765

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=4e-16  Score=107.56  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=70.7

Q ss_pred             ceeEEEeeecC----ceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCC-CcccccCCCCCCEEEEEEEec
Q 026933          152 GMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       152 ~~~i~v~~~~~----~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~-~~L~~~~i~~g~~i~l~~~~~  226 (230)
                      .|.++|+...+    +.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+ ++|++|+|++|++|+|..+.+
T Consensus         7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~   86 (102)
T 1v5o_A            7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred             eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence            36777777543    7899999999999999999999999999999999999999877 799999999999999999998


Q ss_pred             CCC
Q 026933          227 GGG  229 (230)
Q Consensus       227 ~g~  229 (230)
                      ||.
T Consensus        87 gg~   89 (102)
T 1v5o_A           87 VGL   89 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.63  E-value=1e-15  Score=104.55  Aligned_cols=73  Identities=23%  Similarity=0.245  Sum_probs=66.7

Q ss_pred             CeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhccc-ccCCceEEEEE
Q 026933           76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR  148 (230)
Q Consensus        76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i-~~~~~i~l~~~  148 (230)
                      .|+++|+...+  .++++++++++||++||++|++++|+|++.|||+++|+.++|+.+|.+||| .+|++++|++.
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            36788887764  789999999999999999999999999999999999999999999999999 59999999864

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.62  E-value=1.3e-15  Score=102.57  Aligned_cols=74  Identities=22%  Similarity=0.432  Sum_probs=68.5

Q ss_pred             CCeeeEEEccCCcEEee-ccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ..|+|+|+. .|+.+.+ ++++++||.+||++|++.+|+|+++|+|+   |+|+.|+|+.+|++|+|++|++|+++...
T Consensus         6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence            458899985 7899999 99999999999999999999999999999   99999999999999999999999887543

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=104.40  Aligned_cols=77  Identities=16%  Similarity=0.264  Sum_probs=70.3

Q ss_pred             CeeeEEE-ccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        76 ~~~v~v~-~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      .+.+.|+ ..+++.+.++++++.||++||+.++...++|++.|+|+|+|+.|.|+.||.+|||++|.+|||+.+...+
T Consensus        15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p   92 (118)
T 2daf_A           15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP   92 (118)
T ss_dssp             CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred             cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence            3566666 6678899999999999999999999999999999999999999999999999999999999999886544

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.62  E-value=1.2e-15  Score=103.32  Aligned_cols=70  Identities=14%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             CEEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC--c---c-ccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--K---Q-LEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g--~---~-l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      +.|+|+...+  +.+++++.+++||.+||++|+..+||||++|+|+|.|  +   . ++|+.+|++|||.++++|++.
T Consensus        16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv   93 (95)
T 2kjr_A           16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV   93 (95)
T ss_dssp             EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence            3577877655  4899999999999999999999999999999999973  3   3 488999999999999999985

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.62  E-value=5.2e-16  Score=105.89  Aligned_cols=72  Identities=24%  Similarity=0.359  Sum_probs=64.4

Q ss_pred             CCeeeEEEccCCc--EEeeccCccCcHHHHHHHHhhHh-CCC-CCCeEEEecCcccCCCcchhhc--ccccCCceEEE
Q 026933           75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE-GIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV  146 (230)
Q Consensus        75 ~~~~v~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~-~i~-~~~q~L~~~g~~L~d~~~l~~~--~i~~~~~i~l~  146 (230)
                      ..|+|+|++.+++  .+.+++++++||++||++|+++. |+| +++|+|+|+|+.|+|+.+|++|  +|.++++|+|+
T Consensus        22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            5689999999887  67889999999999999999974 555 5999999999999999999999  99999999874

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=105.33  Aligned_cols=77  Identities=16%  Similarity=0.266  Sum_probs=69.6

Q ss_pred             EEEEE-ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCCee
Q 026933            2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ   78 (230)
Q Consensus         2 ~v~v~-~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~~~   78 (230)
                      .|.|+ ..+|..++++++++.||.+||.++...+++|+++|+|.|+|+.|.|+.||.+|||.++.++||.++..+.-.
T Consensus        17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~   94 (118)
T 2daf_A           17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL   94 (118)
T ss_dssp             EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred             EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence            35555 557889999999999999999999999999999999999999999999999999999999999988755433

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.61  E-value=1.5e-15  Score=100.93  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=62.3

Q ss_pred             EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe-------cCccccCCccccccccccCCeEEEEEE
Q 026933            2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~-------~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      +|.|..  .+++.+...+++++||.+||++|+..+||||++|+|.|       .|+.++|+.+|++|||.++++||++-.
T Consensus         4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A            4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            355543  35567889999999999999999999999999999996       478899999999999999999999753

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.61  E-value=2.9e-15  Score=99.68  Aligned_cols=70  Identities=29%  Similarity=0.452  Sum_probs=64.8

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      .+++...|+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|++|++|+++.+
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            3455668899999999999999999999999999999999999999999999999999999999998754

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.60  E-value=2.4e-15  Score=104.49  Aligned_cols=76  Identities=28%  Similarity=0.393  Sum_probs=69.1

Q ss_pred             CCeeeEEEccCC---cEEeeccCc---------cCcHHHHHHHHhhHh--CCCCCC-eEEEecCcccCCCcchhhccccc
Q 026933           75 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK  139 (230)
Q Consensus        75 ~~~~v~v~~~~g---~~~~~~v~~---------~~tV~~lK~~i~~~~--~i~~~~-q~L~~~g~~L~d~~~l~~~~i~~  139 (230)
                      ..|+|+|+..++   +.+.+++++         ++||++||++|++..  ++|+++ |+|+|+|+.|+|+.+|++|+|.+
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~   90 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP   90 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence            458899999888   788899554         499999999999999  999999 99999999999999999999999


Q ss_pred             CCceEEEEEee
Q 026933          140 ESTLHLVLRLR  150 (230)
Q Consensus       140 ~~~i~l~~~~~  150 (230)
                      +++|+++.+..
T Consensus        91 g~~i~lv~~~~  101 (107)
T 1x1m_A           91 GSTVHVLRKSW  101 (107)
T ss_dssp             TCEEEEEESSC
T ss_pred             CCEEEEEeCCC
Confidence            99999987654

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.60  E-value=1.9e-15  Score=107.08  Aligned_cols=77  Identities=23%  Similarity=0.367  Sum_probs=69.0

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhch------hcCC--CCCceEEEECCeecCCCCcccccCCCCCC--EEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~------~~gi--~~~~~~L~~~g~~L~d~~~L~~~~i~~g~--~i~l~  222 (230)
                      |.++++...|+++++++++++||++||++|++      +.|+  ++++|+|+|.|+.|+|+++|++|+|+.|+  +++|+
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv   97 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   97 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence            67888888899999999999999999999999      5577  48999999999999999999999999777  68888


Q ss_pred             EEecCCC
Q 026933          223 LRLRGGG  229 (230)
Q Consensus       223 ~~~~~g~  229 (230)
                      +|+.+++
T Consensus        98 ~r~~~~~  104 (125)
T 2gow_A           98 ARETLPE  104 (125)
T ss_dssp             ECSCCSS
T ss_pred             ecCCCCc
Confidence            8887654

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.60  E-value=5.9e-17  Score=122.08  Aligned_cols=71  Identities=30%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |+|+|++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|+.|+|+.+|+     ++++|||++++.++
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG   71 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG   71 (189)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence            899999999999999999999999999999999999999999999999999999998     88999999887544

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.59  E-value=2.8e-15  Score=121.59  Aligned_cols=73  Identities=96%  Similarity=1.295  Sum_probs=69.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++.
T Consensus       234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL  306 (307)
T 3ai5_A          234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  306 (307)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999998764

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.58  E-value=3.1e-15  Score=101.85  Aligned_cols=74  Identities=27%  Similarity=0.410  Sum_probs=68.9

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCC-cchhhcccccCCceEEEEEeec
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      ..|+|+|+..+|+.+.+++++++||++||++|++..   +++|+|+|+|+.|+|+ .+|++|+|.+|++|+++.+.+.
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            468999999999999999999999999999999998   8899999999999999 9999999999999999887543

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.57  E-value=6.4e-15  Score=99.65  Aligned_cols=75  Identities=24%  Similarity=0.449  Sum_probs=67.1

Q ss_pred             CCeeeEEEccCCcEEeeccCcc-----CcHHHHHHHHhhHhCCCCCCeEEEecCcccCC-CcchhhcccccCCceEEEEE
Q 026933           75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~-----~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~~l~~~~i~~~~~i~l~~~  148 (230)
                      ..|+|+|+. .++.+.++++++     +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|.+|++|+++.+
T Consensus         6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            358899987 578899999985     99999999999999999999999999999988 66899999999999998765


Q ss_pred             ee
Q 026933          149 LR  150 (230)
Q Consensus       149 ~~  150 (230)
                      ..
T Consensus        85 ~~   86 (92)
T 1wxv_A           85 KN   86 (92)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.57  E-value=6e-15  Score=100.15  Aligned_cols=70  Identities=16%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             EEEEEccCC--cEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCc---c----ccCCccccccccccCCeEEEEE
Q 026933            2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g--~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~---~----l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      .|+|+....  ..+++++.+++||++||++|+..+||||++|+|+|.|+   .    ++|+.+|++|+|.++++|++.-
T Consensus        16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd   94 (97)
T 2kj6_A           16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID   94 (97)
T ss_dssp             EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred             EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence            467776444  58999999999999999999999999999999999873   2    5889999999999999999863

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.57  E-value=2e-15  Score=102.69  Aligned_cols=72  Identities=18%  Similarity=0.332  Sum_probs=66.3

Q ss_pred             CeeeEEEccCCcEE-eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           76 GMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        76 ~~~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      .|+|+|+ ..|+.+ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|+++++|+++...
T Consensus         7 ~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            7 GYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             EEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             EEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence            4788888 478899 6999999999999999999999999999999999999999 9999999999999887544

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.56  E-value=9.2e-15  Score=98.95  Aligned_cols=73  Identities=14%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             cCCeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEec--Cc---cc-CCCcchhhcccccCCceEE
Q 026933           74 RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        74 ~~~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~---~L-~d~~~l~~~~i~~~~~i~l  145 (230)
                      .+.+.|+|+...+  ..+++++++++||++||++|+..+|+|++.|+|+|.  |+   .| +|+++|++|+|++|++|++
T Consensus        13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl   92 (95)
T 2kjr_A           13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV   92 (95)
T ss_dssp             CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred             CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence            3446777776655  478999999999999999999999999999999997  44   34 8999999999999999988


Q ss_pred             E
Q 026933          146 V  146 (230)
Q Consensus       146 ~  146 (230)
                      +
T Consensus        93 v   93 (95)
T 2kjr_A           93 V   93 (95)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.56  E-value=5.6e-15  Score=102.58  Aligned_cols=72  Identities=21%  Similarity=0.252  Sum_probs=65.7

Q ss_pred             CEEEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceeEEecCc-----------c----ccCCccccccccccC
Q 026933            1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~g~-----------~----l~d~~~l~~~~i~~~   64 (230)
                      |.|+|++.+|.. .++|+ +++||.+||++|++.+|||++.|+|++.|+           .    ++|+.+|++|||.++
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            789999999976 79999 999999999999999999999999998887           4    578899999999999


Q ss_pred             CeEEEEEEe
Q 026933           65 STLHLVLRL   73 (230)
Q Consensus        65 ~~i~l~~~~   73 (230)
                      ++||+....
T Consensus        87 ~~L~l~~~~   95 (107)
T 1wf9_A           87 SMVYLAYEG   95 (107)
T ss_dssp             CEEECCCSS
T ss_pred             CEEEEEeCC
Confidence            999987543

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=4.9e-15  Score=100.67  Aligned_cols=73  Identities=21%  Similarity=0.333  Sum_probs=65.4

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ..|+|+|+ .+++.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+| .+|++|+|+++++|+++...
T Consensus        16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred             ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence            34788887 578899999999999999999999999999999999999999954 59999999999999887543

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=6.6e-15  Score=100.28  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=65.6

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-cCcccCCCcchhhcccccCCceEEEEEe
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      .|.++++.++|+.+.+++++++||++||++|++++|||+++|+|++ .+..|+|+.+|++|+|++|++++++++.
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSS
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecC
Confidence            4666777789999999999999999999999999999999999985 4444999999999999999999987654

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.54  E-value=1.1e-14  Score=96.75  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=59.7

Q ss_pred             cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe-------cCcccCCCcchhhcccccCCceEEEEEe
Q 026933           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-------~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      .+.+.++..+++++||++||++|+..+|+|++.|+|+|       .|+.++|+++|++|||++|++|||+-+.
T Consensus        12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~   84 (86)
T 4b6w_A           12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQ   84 (86)
T ss_dssp             CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCC
Confidence            34566789999999999999999999999999999997       4788999999999999999999998543

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.53  E-value=3.3e-14  Score=96.00  Aligned_cols=79  Identities=16%  Similarity=0.352  Sum_probs=74.9

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF  230 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~~  230 (230)
                      .+.+.|+..+|+.+.+++.+++++..|+++++++.|++++.++|+|.|+.|+++.|+++|++++|++|+++++++||+.
T Consensus         7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~   85 (94)
T 2io1_B            7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP   85 (94)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred             eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence            4678888888999999999999999999999999999999999999999999999999999999999999999999963

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.53  E-value=2.3e-14  Score=97.43  Aligned_cols=70  Identities=20%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---cc----ccCCccccccccccCCeEEEEE
Q 026933            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~~----l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      .|+|+..... .+.+++++++||.+||++|+..+|||+++|+|+|.|   +.    ++|+.+|++|||.++++||+.-
T Consensus         9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            5677765443 689999999999999999999999999999999986   32    5899999999999999998863

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.53  E-value=1.4e-14  Score=120.76  Aligned_cols=74  Identities=31%  Similarity=0.566  Sum_probs=69.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhh---hhCCCCCceeEEecCccccCCccccccccccCCeE-EEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~---~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i-~l~~~~~   74 (230)
                      |+|+||++.|+++.++|++++||.+||.+|+.   ..|||+++|+|+|+|+.|+|+.+|++|+|.++++| +++.+..
T Consensus         8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred             EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence            89999999999999999999999999999999   67899999999999999999999999999999998 6665553

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=9.1e-15  Score=97.72  Aligned_cols=70  Identities=23%  Similarity=0.292  Sum_probs=63.1

Q ss_pred             CeeeEEEccCCcEE--ee-ccCccCcHHHHHHHHhhH-hCCCCCCeEEEec--CcccCCCcchhhcccccCCceEE
Q 026933           76 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL  145 (230)
Q Consensus        76 ~~~v~v~~~~g~~~--~~-~v~~~~tV~~lK~~i~~~-~~i~~~~q~L~~~--g~~L~d~~~l~~~~i~~~~~i~l  145 (230)
                      .|+|+|++..|+.+  .+ ++++++||++||++|++. .++|+++|+|+|.  |+.|+|+.+|++|+|.++++|++
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            48899999988775  47 899999999999999995 7999999999976  89999999999999999998765

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.52  E-value=3.8e-14  Score=96.16  Aligned_cols=72  Identities=15%  Similarity=0.207  Sum_probs=61.9

Q ss_pred             CeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCc---c----cCCCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~---~----L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      .+.+.|+....  ..+++++++++||++||++|+..+|+|++.|+|+|.|+   .    ++|+++|++|+|.+|++|+++
T Consensus        14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv   93 (97)
T 2kj6_A           14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII   93 (97)
T ss_dssp             CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence            35666665443  47899999999999999999999999999999999883   3    489999999999999999887


Q ss_pred             E
Q 026933          147 L  147 (230)
Q Consensus       147 ~  147 (230)
                      -
T Consensus        94 d   94 (97)
T 2kj6_A           94 D   94 (97)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.51  E-value=4.1e-14  Score=114.78  Aligned_cols=76  Identities=93%  Similarity=1.274  Sum_probs=71.5

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ...|+|+|+..+|+.+.+++++++||++||++|++..++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++
T Consensus       231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL  306 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  306 (307)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999998765

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.50  E-value=1.7e-15  Score=114.10  Aligned_cols=72  Identities=29%  Similarity=0.404  Sum_probs=0.7

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      |+|+|++.+|++++++|++++||.+||++|+...|+|++.|+|+|.|+.|+|+.+|+     ++|+|+|++|++||+
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~   72 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK   72 (189)
T ss_dssp             ----------------------------------------------------------------------------C
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence            568899999999999999999999999999999999999999999999999999998     999999999999986

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.49  E-value=8.8e-14  Score=98.76  Aligned_cols=72  Identities=14%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC---c----cccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K----QLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g---~----~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|+...+. .+++++++++||.+||.+|+..+|||+++|+|+|.|   +    .++|+.+|++|||.++++||+...
T Consensus         7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~   86 (122)
T 1t0y_A            7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   86 (122)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence            35677765553 688999999999999999999999999999999987   3    247899999999999999999853

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.49  E-value=1.9e-13  Score=91.58  Aligned_cols=78  Identities=17%  Similarity=0.373  Sum_probs=74.4

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .+.+.|+..+|+.+.+++.+++++..|+++.+++.|++++.++|+|.|..|.++.|+++|++++|++|.+..++.||+
T Consensus         5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~   82 (91)
T 2io0_B            5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   82 (91)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence            467888888899999999999999999999999999999999999999999999999999999999999999999986

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.47  E-value=8.7e-14  Score=93.95  Aligned_cols=79  Identities=16%  Similarity=0.389  Sum_probs=75.1

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ..|+|.|+..+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|+++|++.++++|+++.++.+|.
T Consensus         6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~   84 (94)
T 2io1_B            6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   84 (94)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred             CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            4588999999999999999999999999999999999999999999999999999999999999999999999988873

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.47  E-value=5.6e-14  Score=93.68  Aligned_cols=71  Identities=24%  Similarity=0.371  Sum_probs=63.0

Q ss_pred             CEEEEEccCCcEEEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEec--Ccccc---CCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~--g~~l~---d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|++.+|+.. +. +++++||.+||++|++.+|||+++|+|.|.  ++.++   ++.+|++|||.+++++++...
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            8999999999654 77 999999999999999999999999999986  46764   679999999999999888643

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.46  E-value=9.3e-14  Score=115.78  Aligned_cols=77  Identities=30%  Similarity=0.550  Sum_probs=70.1

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhh---HhCCCCCCeEEEecCcccCCCcchhhcccccCCce-EEEEEee
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR  150 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~---~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i-~l~~~~~  150 (230)
                      ..|+|+|+..+|+.+.++|++++||.+||.+|++   +.|+|+++|+|+|+|+.|+|+++|++|+|+++++| +++.+.+
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence            4689999999999999999999999999999999   56799999999999999999999999999999999 5555554


Q ss_pred             c
Q 026933          151 G  151 (230)
Q Consensus       151 ~  151 (230)
                      +
T Consensus        86 ~   86 (368)
T 1oqy_A           86 A   86 (368)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.43  E-value=1.8e-13  Score=92.96  Aligned_cols=71  Identities=20%  Similarity=0.279  Sum_probs=61.2

Q ss_pred             eeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC---cc----cCCCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~----L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      +.|.|+..+.. .+.+++++++||++||++|++.+|+|+++|+|+|.|   +.    ++|+++|.+|||.+|++|++.-
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            56667655443 688999999999999999999999999999999986   43    5899999999999999998864

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.42  E-value=4.5e-13  Score=89.79  Aligned_cols=79  Identities=16%  Similarity=0.389  Sum_probs=75.0

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ..|+|.|++.+|+.+.+.|.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|++++++.+|++|+++..+.+|.
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~   82 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   82 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999999888774

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.42  E-value=7.6e-13  Score=89.22  Aligned_cols=77  Identities=17%  Similarity=0.392  Sum_probs=70.3

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .+.+.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|.|..|.++.|+.+|++++|++|+++.++.||
T Consensus        17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            36677888888899999999999999999999999999999999999999999999999999999999999999987

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.41  E-value=2.3e-13  Score=111.79  Aligned_cols=75  Identities=21%  Similarity=0.444  Sum_probs=66.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE---ecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      |.|+|+ .+|+++++++++++||++||++|++.+||||++|+|+   |+|+.|+|+.+|++|+|.++++++|+......
T Consensus         6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~   83 (320)
T 3shq_A            6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD   83 (320)
T ss_dssp             EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence            468888 5799999999999999999999999999999999999   89999999999999999999999998766543

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.41  E-value=2.2e-13  Score=94.54  Aligned_cols=72  Identities=22%  Similarity=0.303  Sum_probs=65.1

Q ss_pred             CeeeEEEccCCcEEeeccC-ccCcHHHHHHHHhhHhCCCCCCeEEEecCc-----------c----cCCCcchhhccccc
Q 026933           76 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK  139 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----------~----L~d~~~l~~~~i~~  139 (230)
                      .|.|+|++.+|.. .++++ +++||.+||++|++++++|++.|+|++.|+           .    ++|+.+|++|||++
T Consensus         7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~   85 (107)
T 1wf9_A            7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   85 (107)
T ss_dssp             CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence            3889999999966 78999 999999999999999999999999998887           4    58899999999999


Q ss_pred             CCceEEEEE
Q 026933          140 ESTLHLVLR  148 (230)
Q Consensus       140 ~~~i~l~~~  148 (230)
                      |++|++...
T Consensus        86 G~~L~l~~~   94 (107)
T 1wf9_A           86 GSMVYLAYE   94 (107)
T ss_dssp             TCEEECCCS
T ss_pred             CCEEEEEeC
Confidence            999988754

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.39  E-value=1.5e-12  Score=92.41  Aligned_cols=71  Identities=14%  Similarity=0.260  Sum_probs=61.1

Q ss_pred             eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC---e---e-cCCCCcccccCCCCCCEEEEEE
Q 026933          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g---~---~-L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      +.+.|++.... .+++++++++||++||++|+...|+|+++|+|+|.|   +   . ++|+++|++|+|++|++|+|..
T Consensus         7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd   85 (122)
T 1t0y_A            7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   85 (122)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence            45666654443 688999999999999999999999999999999976   3   2 4899999999999999999875

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=6.9e-13  Score=90.98  Aligned_cols=78  Identities=15%  Similarity=0.353  Sum_probs=73.9

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .+.+.|+..+|+.+.+.+.+++++..|+.+++++.|++++.++|+|.|..|.++.|+.+|++++|++|+++.++.||+
T Consensus        24 ~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           24 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             eEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            366778888899999999999999999999999999999999999999999999999999999999999999999997

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.38  E-value=1.6e-12  Score=83.45  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=67.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |.|.|+..+|+.+.+.|.+++++..|+.+.+++.|+|++.++|+|+|+.|.++.|.++|++.++++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            6789999999999999999999999999999999999999999999999999999999999999999885

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.37  E-value=1.3e-12  Score=88.03  Aligned_cols=79  Identities=16%  Similarity=0.384  Sum_probs=72.0

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+++|++.+|++|+++.++.||
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            3457888999999999999999999999999999999999999999999999999999999999999999999887764

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.36  E-value=2.5e-12  Score=88.26  Aligned_cols=75  Identities=13%  Similarity=0.339  Sum_probs=69.3

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +.+.|+. .|+.+.+++.+++++..|+++++++.|++++.++|+|.|..|.++.|.++|++++|++|.+.+++.||
T Consensus        32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            6678888 89999999999999999999999999999999999999999999999999999999999999999987

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.36  E-value=7.7e-13  Score=88.11  Aligned_cols=70  Identities=24%  Similarity=0.377  Sum_probs=61.7

Q ss_pred             eeeEEEccCCcEEeec-cCccCcHHHHHHHHhhHhCCCCCCeEEEec--CcccC---CCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~~L~---d~~~l~~~~i~~~~~i~l~~  147 (230)
                      |+|.|+..+|+.. +. +++++||++||+.|+++.|+|+++|+|+|+  ++.+.   |+.+|++|||.+|++|++..
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~   76 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE   76 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence            6789999999654 77 999999999999999999999999999986  47774   68899999999999987764

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.35  E-value=2.2e-12  Score=82.82  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=67.4

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      |+|.|++.+|+.+.+.+.+++++..|+.+++++.|+|++.++|+|+|+.|.++.|.+++++.+|++|+++
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            6788999999999999999999999999999999999999999999999999999999999999999886

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.34  E-value=2.1e-12  Score=88.59  Aligned_cols=78  Identities=15%  Similarity=0.361  Sum_probs=73.7

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ..|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|+|+.|.++.|+.+|++.+|++|+++.++.+|
T Consensus        23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG  100 (104)
T 1wz0_A           23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG  100 (104)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred             CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            467889999999999999999999999999999999999999999999999999999999999999999999887766

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.33  E-value=2.2e-12  Score=89.22  Aligned_cols=81  Identities=15%  Similarity=0.397  Sum_probs=75.0

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ...|.|.|+..+|+.+.+.|.+++++..|+.+++++.|++++.++|+|.|+.|.++.|+++|++.+|++|++++.+.+|+
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             e
Q 026933          154 Q  154 (230)
Q Consensus       154 ~  154 (230)
                      .
T Consensus       104 ~  104 (110)
T 2k8h_A          104 E  104 (110)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.32  E-value=9.7e-12  Score=81.22  Aligned_cols=72  Identities=10%  Similarity=0.258  Sum_probs=68.2

Q ss_pred             CCeeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        75 ~~~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      ..|.|.|+..+|+ .+.+.+.+++++..|+.+++++.|++++.++|+|.|+.|.++.|.+++++.+|++|+++
T Consensus         6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            4688999999996 89999999999999999999999999999999999999999999999999999999875

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.31  E-value=2.3e-12  Score=89.08  Aligned_cols=77  Identities=16%  Similarity=0.396  Sum_probs=73.0

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .+.+.|+...|+.+.+++.+++++..|+++++++.|++++.++|+|.|..|.++.|+.+|++++|++|.+++.+.||
T Consensus        26 ~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg  102 (110)
T 2k8h_A           26 LVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG  102 (110)
T ss_dssp             CEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence            36778888889999999999999999999999999999999999999999999999999999999999999999887

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.30  E-value=1e-11  Score=81.09  Aligned_cols=70  Identities=10%  Similarity=0.274  Sum_probs=67.0

Q ss_pred             CEEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |.|.|+..+|+ .+.+.|.+++++..|+.+.+++.|++++.|+|+|+|+.|.++.|.++|++.++++|++.
T Consensus         8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            57899999996 89999999999999999999999999999999999999999999999999999999874

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.30  E-value=4.1e-12  Score=87.19  Aligned_cols=77  Identities=13%  Similarity=0.320  Sum_probs=70.7

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ..|.|.|+. +|+.+.+.|..++++..|+.+++++.|++++.++|+|+|+.|.++.|.+++++.+|++|++++++.||
T Consensus        30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            458899999 99999999999999999999999999999999999999999999999999999999999999887664

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.28  E-value=3.3e-12  Score=104.92  Aligned_cols=76  Identities=21%  Similarity=0.434  Sum_probs=66.5

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      .++|+|+ .+|+.+.+++++++||++||++|++.+|+|+++|+|+   |+|+.|.|+.+|++|+|++|++|+++......
T Consensus         5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~   83 (320)
T 3shq_A            5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD   83 (320)
T ss_dssp             EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred             eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence            4678888 5889999999999999999999999999999999999   89999999999999999999999998665443

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.26  E-value=2.1e-11  Score=83.01  Aligned_cols=70  Identities=17%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             EEEEEc---cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC-------ccc-cCCccccccccccCCeEEEE
Q 026933            2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g-------~~l-~d~~~l~~~~i~~~~~i~l~   70 (230)
                      .|+|+.   .+|..+...+++++||++||.+|+..+|+|++.|+|+|.+       ..| +|..+|..|++.++++||+.
T Consensus        11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~   90 (97)
T 1wjn_A           11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence            466664   4688999999999999999999999999999999999873       224 56799999999999999987


Q ss_pred             E
Q 026933           71 L   71 (230)
Q Consensus        71 ~   71 (230)
                      .
T Consensus        91 d   91 (97)
T 1wjn_A           91 W   91 (97)
T ss_dssp             C
T ss_pred             e
Confidence            5

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.16  E-value=2e-10  Score=78.06  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=60.0

Q ss_pred             eEEEee---ecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECC-------eec-CCCCcccccCCCCCCEEEEE
Q 026933          154 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       154 ~i~v~~---~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g-------~~L-~d~~~L~~~~i~~g~~i~l~  222 (230)
                      .+.|++   .+++.+...++.++||++||.+|+..+|+|+..|+|.|.+       ..| +|.++|++|++.+|++|++.
T Consensus        11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~   90 (97)
T 1wjn_A           11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence            444443   3577899999999999999999999999999999999762       225 78999999999999999987


Q ss_pred             EE
Q 026933          223 LR  224 (230)
Q Consensus       223 ~~  224 (230)
                      -.
T Consensus        91 d~   92 (97)
T 1wjn_A           91 WS   92 (97)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.08  E-value=8.5e-10  Score=76.35  Aligned_cols=75  Identities=17%  Similarity=0.416  Sum_probs=70.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~  227 (230)
                      +.+.|+..+|+.+.+.+.+++++..|++..+++.|+++..++|+|.|..+.++.|..++++++|++|.+...+.|
T Consensus        41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G  115 (115)
T 3kyd_D           41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG  115 (115)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            567777778888999999999999999999999999999999999999999999999999999999999988764

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.03  E-value=8.9e-10  Score=76.25  Aligned_cols=75  Identities=16%  Similarity=0.375  Sum_probs=70.4

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ..+.|.|+..+|..+.+.|..++++..|+...+++.|++++.++|+|+|+.|.++.|.+++++.+|++|.++...
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence            457888888899999999999999999999999999999999999999999999999999999999999998754

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.97  E-value=1.1e-09  Score=81.67  Aligned_cols=76  Identities=12%  Similarity=0.295  Sum_probs=71.2

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +.+.|.. +|+.+.+.+.+++++..|++..+++.|+++..++|+|.|..+.++.|..++++++||+|.++..+.||+
T Consensus        58 InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           58 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             EEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            5566653 788999999999999999999999999999999999999999999999999999999999999999996

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.96  E-value=2.4e-09  Score=81.46  Aligned_cols=76  Identities=14%  Similarity=0.364  Sum_probs=71.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +.+.|+. .|+...+.+.+++++..|++..+++.|++++.++|+|.|+.+.++.|..++++++|++|.++..+.||+
T Consensus        30 I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~  105 (200)
T 3pge_A           30 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG  105 (200)
T ss_dssp             EEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred             EEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence            5566654 788899999999999999999999999999999999999999999999999999999999999999986

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.87  E-value=4.3e-09  Score=80.01  Aligned_cols=79  Identities=13%  Similarity=0.287  Sum_probs=73.0

Q ss_pred             ecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        73 ~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      +...++|.|+ .+|..+.+.+..++++..|+...+++.|++++.+|++|+|+.+.++.|.+++++.+|++|+++..+.+|
T Consensus        26 ~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg  104 (200)
T 3pge_A           26 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  104 (200)
T ss_dssp             CCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred             CCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence            3456788886 488899999999999999999999999999999999999999999999999999999999999988766

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.84  E-value=2.7e-09  Score=79.53  Aligned_cols=80  Identities=11%  Similarity=0.275  Sum_probs=73.7

Q ss_pred             ecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        73 ~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      +...+.|.|+ .+|..+.+.|..++++..|+...+++.|+++..++++|+|+.+.++.|.+++++.+|++|.+++...+|
T Consensus        54 p~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG  132 (207)
T 3tix_A           54 PETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG  132 (207)
T ss_dssp             -CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred             CCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            3456788886 488899999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             e
Q 026933          153 M  153 (230)
Q Consensus       153 ~  153 (230)
                      .
T Consensus       133 ~  133 (207)
T 3tix_A          133 L  133 (207)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.82  E-value=2.3e-08  Score=63.07  Aligned_cols=71  Identities=15%  Similarity=0.323  Sum_probs=64.5

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      +.+.+++.....+.+.++++++|.+|-...+.+.+||++ .++|.|.|..|+++.++.+|++.+++.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            455666677777899999999999999999999999999 89999999999999999999999999998864

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.80  E-value=6.8e-10  Score=83.86  Aligned_cols=79  Identities=13%  Similarity=0.273  Sum_probs=2.0

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGGF  230 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~~  230 (230)
                      ..+.+.| ..+|+...+++.+++.+..|++..+++.|++++.++|+|.|..+.++.|..++++++||+|.++..+.||+.
T Consensus        20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~   98 (227)
T 3v7o_A           20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT   98 (227)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence            3456667 557888999999999999999999999999999999999999999999999999999999999999999973

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.77  E-value=5.5e-09  Score=68.09  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=58.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc---c--cCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~---l--~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |.+.|++.+| ++.+++++++|+.+|+.+|.+.++++++.|.+++...+   |  .++.+|+++||..|+.+++.
T Consensus         5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            6788988887 77788999999999999999999999999888865433   3  46789999999999998764

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.77  E-value=8.2e-08  Score=60.53  Aligned_cols=70  Identities=16%  Similarity=0.316  Sum_probs=63.2

Q ss_pred             eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      .+..++.....+.+.+.++.+|.+|-+..+.+-||+++ .++|.|.|..|+++.++++|++.+|+.|.+++
T Consensus        11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            44556655667999999999999999999999999999 89999999999999999999999999998864

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.72  E-value=1.4e-09  Score=82.08  Aligned_cols=83  Identities=12%  Similarity=0.308  Sum_probs=1.7

Q ss_pred             EEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        71 ~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      ..+...|.|.| ..+|..+.+.|..++++..|+...+++.|++++.++++|+|+.+.++.|.+++++.+|++|.++....
T Consensus        16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~   94 (227)
T 3v7o_A           16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence            34456788888 77899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccee
Q 026933          151 GGMQ  154 (230)
Q Consensus       151 ~~~~  154 (230)
                      ||..
T Consensus        95 GG~~   98 (227)
T 3v7o_A           95 GGLT   98 (227)
T ss_dssp             -CCC
T ss_pred             CCch
Confidence            8853

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.65  E-value=3.2e-08  Score=64.43  Aligned_cols=70  Identities=14%  Similarity=0.229  Sum_probs=58.3

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCc---cc--CCCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---QL--EDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~---~L--~d~~~l~~~~i~~~~~i~l~  146 (230)
                      .|.+.|++.+| .+.+++++++|+.+|+.+|++.++++++.+.+.+...   .+  .++.+|+++|++.|+.|++.
T Consensus         4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            47888998887 5678899999999999999999999998887765433   33  47889999999999998764

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.54  E-value=4.3e-06  Score=70.19  Aligned_cols=136  Identities=24%  Similarity=0.343  Sum_probs=107.3

Q ss_pred             CcEEeeccCccCcHHHHHHHHhhHhC----CCCCCeEEEe------cCcccCCCcchhhcccccCCceEEEEEeecceeE
Q 026933           86 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI  155 (230)
Q Consensus        86 g~~~~~~v~~~~tV~~lK~~i~~~~~----i~~~~q~L~~------~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~~i  155 (230)
                      +.+-.+.++++.||.+....|.++..    .++++.-|++      .|.-|+++++|..|++.+++.+....   ..+.+
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~   88 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL   88 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence            66678999999999999999988874    4678888887      34558888999999999998775543   34678


Q ss_pred             EEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEECC---------eecCCCCcccccCCCCCCEEEEEEE
Q 026933          156 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       156 ~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~~g---------~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      .|..++|+...+.+++.+|+.++-..|+.+.|+... .+-|.+..         .-|+.++++.+.+..+...+++.+|
T Consensus        89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK  167 (371)
T 3ivf_A           89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK  167 (371)
T ss_dssp             EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence            889999999999999999999999999999998654 45555422         2356677888877777777666544

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.52  E-value=4e-07  Score=61.14  Aligned_cols=72  Identities=13%  Similarity=0.278  Sum_probs=65.9

Q ss_pred             CCeeeEEEccCCc-EEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           75 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        75 ~~~~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      ..+.|.|+..+|. .+.+.+..+++...|....+++.|++++..++.|.|..+.++.|..++++.+|++|.++
T Consensus        24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            4577788888884 78999999999999999999999999999999999999999999999999999999774

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.49  E-value=6.9e-07  Score=60.00  Aligned_cols=70  Identities=13%  Similarity=0.295  Sum_probs=64.2

Q ss_pred             eeEEEeeecCc-eEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 026933          153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~  222 (230)
                      +.+.|+..+++ .+.+.+..+++...|....+++.|+++...+|+|.|..+.++.|..++++++|++|.+.
T Consensus        26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            56677777774 78999999999999999999999999999999999999999999999999999999874

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.47  E-value=3.9e-07  Score=60.51  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=47.0

Q ss_pred             cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccc--cCCccccccccccCC
Q 026933            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYNIQKES   65 (230)
Q Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l--~d~~~l~~~~i~~~~   65 (230)
                      ..+..+.+.+++++||..+|++|++.+|||+++|+|.|.|+.+  +.+..-..|.-...+
T Consensus        21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~   80 (94)
T 4efo_A           21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEE   80 (94)
T ss_dssp             TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTT
T ss_pred             ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCC
Confidence            4577889999999999999999999999999999999999654  445555555544333

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=98.46  E-value=4.5e-07  Score=59.38  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      +||.+.|-..+++...+.+.++.++.++-++.++++|++++++.|.|+++.+|-+.+++-.|+.+|+++.++-+
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence            45778888889999999999999999999999999999999999999999999999999999999999998754

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.37  E-value=1.2e-06  Score=67.63  Aligned_cols=78  Identities=13%  Similarity=0.317  Sum_probs=71.1

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ..+.+.|+. .++.+.+++..++++..|++..+++.|++++.++|+|.|..+.++.|..++.++++++|.+..++.||.
T Consensus        20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~   97 (209)
T 3uf8_A           20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS   97 (209)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred             CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence            345566665 677889999999999999999999999999999999999999999999999999999999999999875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.36  E-value=2.3e-05  Score=65.76  Aligned_cols=138  Identities=24%  Similarity=0.351  Sum_probs=106.0

Q ss_pred             EEEccCCcEEEEEecCCCcHHHHHHHhhhhhC----CCCCceeEEec------CccccCCccccccccccCCeEEEEEEe
Q 026933            4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         4 ~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g----ip~~~q~l~~~------g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      .|... +-+.++.++|+.||.|+-..|.++..    .+.++-.|++.      |+=|+++++|..|++..++.+....+.
T Consensus         7 ~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~   85 (371)
T 3ivf_A            7 KISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ   85 (371)
T ss_dssp             EEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE
T ss_pred             EEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce
Confidence            34333 77889999999999999999977764    35777788873      333888999999999999988877544


Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCC-CCeEEEecC---------cccCCCcchhhcccccCCce
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG---------KQLEDGRTLADYNIQKESTL  143 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g---------~~L~d~~~l~~~~i~~~~~i  143 (230)
                         +.+.|..++|....+.+++++|+.++-..|+++.|+.. +..-|.+..         .-|+.++++.+.+......+
T Consensus        86 ---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l  162 (371)
T 3ivf_A           86 ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETL  162 (371)
T ss_dssp             ---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEE
T ss_pred             ---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceE
Confidence               78899999999999999999999999999999999754 345666532         23556677777665444444


Q ss_pred             EE
Q 026933          144 HL  145 (230)
Q Consensus       144 ~l  145 (230)
                      .+
T Consensus       163 ~f  164 (371)
T 3ivf_A          163 LL  164 (371)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.35  E-value=5.5e-08  Score=80.15  Aligned_cols=80  Identities=13%  Similarity=0.285  Sum_probs=0.6

Q ss_pred             eecceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          149 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       149 ~~~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +...+.+.|+. .|+...+++..++++..|++..+++.|++++.++|+|.|+.+.++.|.+++++++||+|.+...+.||
T Consensus        18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~   96 (360)
T 3ix6_A           18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   96 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence            33445666765 57788999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 026933          229 G  229 (230)
Q Consensus       229 ~  229 (230)
                      +
T Consensus        97 ~   97 (360)
T 3ix6_A           97 M   97 (360)
T ss_dssp             C
T ss_pred             H
Confidence            6

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=98.32  E-value=2.8e-06  Score=55.57  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=68.1

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      .+|.|.|-..++++..+.+.+++++.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+.+.++..
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999988753

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.31  E-value=7.2e-08  Score=79.43  Aligned_cols=83  Identities=13%  Similarity=0.317  Sum_probs=0.5

Q ss_pred             EEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ...+...+.|.|+. +|..+.+.+..++++..|+.+.+++.|++++.+++.|+|+.+.++.|.+++++.+|++|.++...
T Consensus        15 ~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q   93 (360)
T 3ix6_A           15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhcc
Confidence            34455667888876 67788999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ecce
Q 026933          150 RGGM  153 (230)
Q Consensus       150 ~~~~  153 (230)
                      .+|+
T Consensus        94 ~g~~   97 (360)
T 3ix6_A           94 IGGM   97 (360)
T ss_dssp             ---C
T ss_pred             CchH
Confidence            8884

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.26  E-value=5.1e-06  Score=54.84  Aligned_cols=72  Identities=14%  Similarity=0.266  Sum_probs=65.8

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      .+.|.|+ .+|....+.+..++....|....+++.|++++..++.|.|..+.++.|.++.++.++++|.++.-
T Consensus        21 ~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           21 LFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             CEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             eEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            4677777 46888899999999999999999999999999999999999999999999999999999988753

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.23  E-value=1.5e-06  Score=67.09  Aligned_cols=82  Identities=12%  Similarity=0.303  Sum_probs=71.8

Q ss_pred             EEEecCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           70 VLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        70 ~~~~~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      .+.+...+.|.|+. ++..+.+.+..++++..|+.+.+++.|++++.++++|.|+.+.++.|.++..+.+++.|.+....
T Consensus        15 ~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq   93 (209)
T 3uf8_A           15 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (209)
T ss_dssp             ---CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred             eeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence            34445667788876 77788999999999999999999999999999999999999999999999999999999998877


Q ss_pred             ecc
Q 026933          150 RGG  152 (230)
Q Consensus       150 ~~~  152 (230)
                      .+|
T Consensus        94 ~Gg   96 (209)
T 3uf8_A           94 IGG   96 (209)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            664

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=98.21  E-value=2.5e-06  Score=59.94  Aligned_cols=70  Identities=27%  Similarity=0.400  Sum_probs=58.7

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-------------------------------------ceeEEe
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLIF   45 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~-------------------------------------~q~l~~   45 (230)
                      +.|+.++|...++.|+.+.||.+++..|++..||+..                                     .|+|..
T Consensus        14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~   93 (128)
T 2kc2_A           14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT   93 (128)
T ss_dssp             EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred             EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence            7899999999999999999999999999999999965                                     334322


Q ss_pred             --cCccccCCccccccccccCCeEEEEEE
Q 026933           46 --AGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus        46 --~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                        .+.-|+++.||.++||..++++.|.-+
T Consensus        94 dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           94 DDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             SSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             cCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence              124577889999999999999877654

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.19  E-value=5.5e-05  Score=66.27  Aligned_cols=184  Identities=11%  Similarity=0.207  Sum_probs=129.7

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-Ccc-------ccC-----CccccccccccCCeEEEEEEe-----
Q 026933           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ-------LED-----GRTLADYNIQKESTLHLVLRL-----   73 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g~~-------l~d-----~~~l~~~~i~~~~~i~l~~~~-----   73 (230)
                      ..++.|...+|+.+||+.|.+.+|+|+++|||+.. .+.       +.+     ..++.++.- .++.+.+.+..     
T Consensus        37 ~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~  115 (530)
T 2ylm_A           37 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPEL  115 (530)
T ss_dssp             CEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHH
T ss_pred             cceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEeccccc
Confidence            34789999999999999999999999999999943 110       111     122333211 23334444321     


Q ss_pred             ------------cCCeeeEEEccC--CcEE----eeccCccCcHHHHHHHHhhHhCCCCCCeEEEec------CcccC-C
Q 026933           74 ------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-D  128 (230)
Q Consensus        74 ------------~~~~~v~v~~~~--g~~~----~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~------g~~L~-d  128 (230)
                                  ...+-|++|..+  .+++    .+.++.+++|+++-..|.+..|+|++.-..+|.      ...|+ .
T Consensus       116 ~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~  195 (530)
T 2ylm_A          116 AASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDY  195 (530)
T ss_dssp             HTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCS
T ss_pred             CCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccc
Confidence                        113677777654  3343    356888999999999999999999987655554      24466 5


Q ss_pred             Ccchhhc--ccccCCceEEEEEeecc------------------eeEEEee---ecCceEEEEeeccccHHHHHHHhchh
Q 026933          129 GRTLADY--NIQKESTLHLVLRLRGG------------------MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDK  185 (230)
Q Consensus       129 ~~~l~~~--~i~~~~~i~l~~~~~~~------------------~~i~v~~---~~~~~~~~~v~~~~tV~~LK~~i~~~  185 (230)
                      +.|+.++  .+.+|+.|.+-......                  +.+.++.   .+...+.++++...|-.++-++|++.
T Consensus       196 ~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~  275 (530)
T 2ylm_A          196 DVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR  275 (530)
T ss_dssp             SSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHH
T ss_pred             cccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence            7899999  99999987555443311                  3333332   22456999999999999999999999


Q ss_pred             cCCCCCceEEE
Q 026933          186 EGIPPDQQRLI  196 (230)
Q Consensus       186 ~gi~~~~~~L~  196 (230)
                      .+++|...+|.
T Consensus       276 l~~dP~~lRf~  286 (530)
T 2ylm_A          276 LNTDPMLLQFF  286 (530)
T ss_dssp             HTSCGGGEEEE
T ss_pred             hCCCchhEEEE
Confidence            99999998886

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=98.19  E-value=8.1e-06  Score=53.89  Aligned_cols=70  Identities=14%  Similarity=0.309  Sum_probs=64.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      +.+.|+. .|....+.+..++....|.+..+++.|++++..+++|.|..+.++.|.+++++++|++|.+++
T Consensus        22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred             EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence            4556663 678899999999999999999999999999999999999999999999999999999999876

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.13  E-value=7.1e-06  Score=54.42  Aligned_cols=64  Identities=20%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeec--CCCCcccccC-CCCCCEEEEEEE
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN-IQKESTLHLVLR  224 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L--~d~~~L~~~~-i~~g~~i~l~~~  224 (230)
                      .++.+.+.+.+.+|+..+|++|++++|||++.|+|+|.|+.|  +++++-..|- -.+..-|.|+-+
T Consensus        22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~   88 (94)
T 4efo_A           22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL   88 (94)
T ss_dssp             TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred             cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence            567899999999999999999999999999999999999654  5555555553 234455555543

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=98.03  E-value=6.9e-06  Score=57.71  Aligned_cols=71  Identities=25%  Similarity=0.380  Sum_probs=58.7

Q ss_pred             eEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEE-----------------------------------
Q 026933          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-----------------------------------  197 (230)
Q Consensus       154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~-----------------------------------  197 (230)
                      .+.|+.++|+..++.|+...||.+++..||.+.||+.. .+-|..                                   
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            57889999999999999999999999999999998743 343432                                   


Q ss_pred             ---CCeecCCCCcccccCCCCCCEEEEEEE
Q 026933          198 ---AGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       198 ---~g~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                         ...-|++++||.++||.+++++.|..|
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence               124568899999999999999877665

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.98  E-value=9.3e-07  Score=74.72  Aligned_cols=76  Identities=12%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +.+.|+. .++...+++..+++...|++..+++.|+++..++|+|.|+.+.++.|..++++++|++|.+...+.||.
T Consensus        31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence            4455555 567788999999999999999999999999999999999999999999999999999999999999885

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.97  E-value=9.7e-07  Score=74.62  Aligned_cols=83  Identities=11%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecce
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM  153 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~~  153 (230)
                      ...+.|.|+. ++..+.+.+..+++...|+...+++.|+++..+++.|+|+.+.++.|.+++++.+|++|.++....+|.
T Consensus        28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence            3456677766 677888999999999999999999999999999999999999999999999999999999999988886


Q ss_pred             eEEE
Q 026933          154 QIFV  157 (230)
Q Consensus       154 ~i~v  157 (230)
                      .+.+
T Consensus       107 n~~~  110 (389)
T 4da1_A          107 NLYF  110 (389)
T ss_dssp             ----
T ss_pred             ccce
Confidence            5544

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.77  E-value=7.7e-05  Score=48.06  Aligned_cols=68  Identities=15%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             EEEEEc--cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-----eeEEecCccccCCccccccccccCCeEEE
Q 026933            2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-----QRLIFAGKQLEDGRTLADYNIQKESTLHL   69 (230)
Q Consensus         2 ~v~v~~--~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-----q~l~~~g~~l~d~~~l~~~~i~~~~~i~l   69 (230)
                      .|++..  ..|+++.++++...||.+|...+-+.++++...     -+..=.+..|.++..|++|++.+|+.+.+
T Consensus         6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            466654  579999999999999999999999999988632     22223578899999999999999999865

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=97.66  E-value=0.0085  Score=52.44  Aligned_cols=198  Identities=12%  Similarity=0.111  Sum_probs=125.9

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE-ec---Cc---c--ccCCccccccccc----cCCeEEEEEEe--
Q 026933            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FA---GK---Q--LEDGRTLADYNIQ----KESTLHLVLRL--   73 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~-~~---g~---~--l~d~~~l~~~~i~----~~~~i~l~~~~--   73 (230)
                      +...|.++++...|-.++-++|.+..|+.|..-||+ .+   +.   .  ...+.+|.+.=..    ....+...+-.  
T Consensus       251 ~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ip  330 (530)
T 2ylm_A          251 NDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMK  330 (530)
T ss_dssp             TCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCC
Confidence            356799999999999999999999999999988876 21   21   1  1223444432111    11223222211  


Q ss_pred             ------cCCeeeEEEccCC--cEEeeccCccCcHHHHHHHHhhHhCCC---CCCeEEE--ecC---cccCCCcchhhccc
Q 026933           74 ------RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAG---KQLEDGRTLADYNI  137 (230)
Q Consensus        74 ------~~~~~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~---~~~q~L~--~~g---~~L~d~~~l~~~~i  137 (230)
                            ...++|+....+.  ..+.+-++.+.||++|-..++++.+++   ....|+.  +++   +.+.++.++.+..-
T Consensus       331 l~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d  410 (530)
T 2ylm_A          331 ITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP  410 (530)
T ss_dssp             HHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred             HHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence                  1345665543332  357788899999999999999999987   4667775  666   45677778876532


Q ss_pred             ccCCceEEEEEee--------cceeEEEee-------ecCceEEEEeeccccHHHHHHHhchhcCCCC---CceE--EEE
Q 026933          138 QKESTLHLVLRLR--------GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQR--LIF  197 (230)
Q Consensus       138 ~~~~~i~l~~~~~--------~~~~i~v~~-------~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~---~~~~--L~~  197 (230)
                      .....+.+..-+.        +.+.+.|..       ..|..+.+.+.+..|+.++|++|.+++|++.   +.++  ++.
T Consensus       411 ~~~~~~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~  490 (530)
T 2ylm_A          411 ATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVM  490 (530)
T ss_dssp             CTTCEEEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEE
T ss_pred             cccceEEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEE
Confidence            2244444432221        112233322       2366788999999999999999999999873   3444  454


Q ss_pred             CC--eecCCCC
Q 026933          198 AG--KQLEDGR  206 (230)
Q Consensus       198 ~g--~~L~d~~  206 (230)
                      .+  ..++|+.
T Consensus       491 ~~~~~yl~d~d  501 (530)
T 2ylm_A          491 MGRHQYINEDE  501 (530)
T ss_dssp             TTEEEECCTTT
T ss_pred             CCcccccCCcc
Confidence            44  3455543

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.65  E-value=0.00026  Score=46.15  Aligned_cols=70  Identities=19%  Similarity=0.360  Sum_probs=59.2

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      ..+.++.++|+.+.-.+..++|+.+|..-|.. .+.++..+.|+  |..+.+   +.++||.+.|+.+++++.+--
T Consensus         8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            45778888999889999999999999999988 56778889998  556777   457899999999999998753

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.60  E-value=0.00051  Score=44.73  Aligned_cols=68  Identities=19%  Similarity=0.369  Sum_probs=57.3

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc---CCccccccccccCCeEEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l~---d~~~l~~~~i~~~~~i~l~   70 (230)
                      +|.|+..+|..+.-....++||.+|...|.. .+.++....|.  |-.+.+.   .+.||.+.|+.+++++.+-
T Consensus         9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            5789999999999999999999999999998 67777777777  5567773   4689999999988887764

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.58  E-value=0.00022  Score=45.94  Aligned_cols=62  Identities=15%  Similarity=0.261  Sum_probs=52.3

Q ss_pred             ecCceEEEEeeccccHHHHHHHhchhcCCCC--Cc-e--EEEECCeecCCCCcccccCCCCCCEEEE
Q 026933          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQ-Q--RLIFAGKQLEDGRTLADYNIQKESTLHL  221 (230)
Q Consensus       160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~--~~-~--~L~~~g~~L~d~~~L~~~~i~~g~~i~l  221 (230)
                      ..++.+.+.++...|+.+|...+.+.++++.  .. .  +..-.+..|.+...|.+|+|.+||.+.+
T Consensus        14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            5688999999999999999999999988653  22 3  3346778899999999999999999875

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.33  E-value=0.00055  Score=48.04  Aligned_cols=71  Identities=20%  Similarity=0.341  Sum_probs=60.1

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCccc--CC-CcchhhcccccCCceEEE
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLV  146 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L--~d-~~~l~~~~i~~~~~i~l~  146 (230)
                      +...|.|+..+|..+.-.+..++||.+|..-|... +.+.....|+  |..+.+  .| +.+|.+.|+.+.+.+.+.
T Consensus        42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            34678889999999999999999999999999887 7777888888  567888  33 789999999998888664

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.32  E-value=0.0014  Score=44.87  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC---CCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~l~~~~i~~~~~i~l~  146 (230)
                      ..+|.|+..+|..+.-.++.++||.++..-|....+.+.....|.  |..+.+.   .+.||++.|+.+.+++.+.
T Consensus        13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~   88 (109)
T 2dzk_A           13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL   88 (109)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence            457888899999999999999999999999999888777788887  5667775   3789999999998777554

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.21  E-value=0.0024  Score=43.65  Aligned_cols=70  Identities=17%  Similarity=0.276  Sum_probs=58.3

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc--C-CccccccccccCCeEEEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l~--d-~~~l~~~~i~~~~~i~l~~   71 (230)
                      +|.|+..+|..+.-..+.++||.+|...|....+.+...-.|.  |..+.+.  | +.||.+.|+.+...+.+..
T Consensus        15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            5889999999999999999999999999999988775555665  5567775  3 6899999999887766654

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=97.11  E-value=0.0019  Score=45.24  Aligned_cols=71  Identities=18%  Similarity=0.330  Sum_probs=60.2

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      ..|.+|.++|+.+.-.+..++|+.+|..-|... +.++..+.|+  |-.+.+   +.+++|.+.|+.+.+.+.+...
T Consensus        44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~  119 (124)
T 1wj4_A           44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES  119 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence            567888889999999999999999999999887 7788889888  567777   3479999999999888877543

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.91  E-value=0.0029  Score=40.46  Aligned_cols=65  Identities=12%  Similarity=0.218  Sum_probs=56.7

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEec---CcccCCCcchhhccccc
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK  139 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~L~d~~~l~~~~i~~  139 (230)
                      ..+++.|+....+...+.|++..+.+++--.|+++..+.++...|...   +..|+-+++|.||||++
T Consensus         9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A            9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            456677777777888899999999999999999999999999999854   46788899999999986

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.88  E-value=0.0052  Score=38.85  Aligned_cols=60  Identities=12%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|+|+..+.....++++++.||+||=++    .|+|++.-....||+.+..+..      .+++++.++
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~~------l~GD~VeIv   60 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQS------VEVDRVKVL   60 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTSS------SCCCCEEEC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHHC------CCCCEEEEE
Confidence            89999999655667999999999998776    8999988877789988876662      246776664

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.78  E-value=0.0026  Score=40.63  Aligned_cols=63  Identities=13%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEE---CCeecCCCCcccccCCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK  215 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~---~g~~L~d~~~L~~~~i~~  215 (230)
                      +.+.|+....+..-+.|+|..+.++|--.|+++..++|+...|..   .+..|+-+++|.+|||++
T Consensus        11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            445566666778899999999999999999999999999999984   446889999999999987

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.72  E-value=0.0061  Score=41.63  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=57.2

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC--CCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d~~~l~~~~i~~~~~i~l~  146 (230)
                      ..+|.|+..+|+.+.-.+..++||.+|..-|... +..+....|.  |-.+.+.  .+.||++.|+.+.+++.|.
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve   96 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE   96 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence            3578888899999888899999999999999865 5566778887  5577775  4789999999998877554

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.58  E-value=0.0082  Score=40.97  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=58.0

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeecC--CCCcccccCCCCCCEEEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L~--d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      ..|.+|.++|+.+.-.+..++||.+|..-|... +..+..+.|+  |-.+.+.  .++||.+.|+.+.+++.|.-+
T Consensus        24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~   98 (109)
T 2cr5_A           24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   98 (109)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence            457788888988888999999999999999865 5566778887  5566674  579999999999999977543

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=96.42  E-value=0.01  Score=41.71  Aligned_cols=66  Identities=21%  Similarity=0.355  Sum_probs=54.6

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHh-CCCCCCeEEE--ecCcccCC-CcchhhcccccCC
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKES  141 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~--~~g~~L~d-~~~l~~~~i~~~~  141 (230)
                      ..+|.|+..+|..+.-.++.++||.+|..-|.... +.....+.|+  |..+.+.| +.||.+.|+.+..
T Consensus        52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psa  121 (127)
T 1s3s_G           52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV  121 (127)
T ss_dssp             CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCce
Confidence            46788899999999999999999999999998864 3556677887  55778865 6899999998754

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=96.02  E-value=0.021  Score=44.01  Aligned_cols=66  Identities=23%  Similarity=0.402  Sum_probs=53.4

Q ss_pred             eEEEEeeccccHHHHHHHhchhcCCCCC-ceEEE--E-CC--eecCC-CCcccccCCCCCCEEEEEEEecCCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AG--KQLED-GRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~--~-~g--~~L~d-~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .+++.++..+|+.+|++.+++.++++++ ..+|-  + .+  ..|++ ++||.++++.+|..|.+-.|...|.
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg~  213 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDGT  213 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-C
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence            4667889999999999999999999987 67775  3 22  45655 6799999999999999988876663

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=95.92  E-value=0.074  Score=33.85  Aligned_cols=62  Identities=18%  Similarity=0.364  Sum_probs=53.3

Q ss_pred             EEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEec
Q 026933          165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  226 (230)
Q Consensus       165 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~  226 (230)
                      +...++-..++..||+.++.+.|++.+.+.+...+..|+++++|-+.+++-...+.+.+...
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik   66 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI   66 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence            44556667788999999999999999999998778779999999999999998988877643

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=95.90  E-value=0.019  Score=40.33  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=52.0

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhh-CCCCCceeEE--ecCccccC-CccccccccccCCe
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST   66 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-gip~~~q~l~--~~g~~l~d-~~~l~~~~i~~~~~   66 (230)
                      +|.|+..+|..+.-..+.++||.+|...|.... +.......|+  |-.+.+.| +.||.+.|+.+...
T Consensus        54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav  122 (127)
T 1s3s_G           54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI  122 (127)
T ss_dssp             CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence            578999999999999999999999999999974 3444445555  55677876 59999999987443

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=95.80  E-value=0.048  Score=42.34  Aligned_cols=65  Identities=20%  Similarity=0.304  Sum_probs=53.6

Q ss_pred             eEEEEeeccccHHHHHHHhchhcCCCCC-ceEEE-EC----CeecCC-CCcccccCCCCCCEEEEEEEecCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI-FA----GKQLED-GRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~-~~----g~~L~d-~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .++..++..+|+.+|++.+++.++++++ ..+|- +.    ...|.| +.+|.++++.+|..|.+-.|...|
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            3567788999999999999999999997 58876 33    245654 689999999999999998886665

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.58  E-value=0.071  Score=36.15  Aligned_cols=63  Identities=38%  Similarity=0.488  Sum_probs=45.7

Q ss_pred             CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEEC----CeecCCC-------------CcccccCCCCC
Q 026933          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------RTLADYNIQKE  216 (230)
Q Consensus       162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~~----g~~L~d~-------------~~L~~~~i~~g  216 (230)
                      +..+++.+-..+||.++|++|-...  |.|      ++.+.|-|.    |+.|.|.             .||++|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4568888999999999999998764  443      456667652    3455442             48999999999


Q ss_pred             CEEEEEEE
Q 026933          217 STLHLVLR  224 (230)
Q Consensus       217 ~~i~l~~~  224 (230)
                      +++.+.-+
T Consensus       103 atl~l~~~  110 (111)
T 4e71_A          103 ATLILSKV  110 (111)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEEeC
Confidence            99987653

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.53  E-value=0.059  Score=36.54  Aligned_cols=62  Identities=39%  Similarity=0.512  Sum_probs=44.1

Q ss_pred             CcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec----CcccCC-------------CcchhhcccccC
Q 026933           86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLED-------------GRTLADYNIQKE  140 (230)
Q Consensus        86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~~L~d-------------~~~l~~~~i~~~  140 (230)
                      +..+++.|-..+||.++|++|-+..  |.|      ++.+.|-|.    |+.|.|             =.||++|++.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4568888889999999999998753  333      456667663    344443             148999999999


Q ss_pred             CceEEEE
Q 026933          141 STLHLVL  147 (230)
Q Consensus       141 ~~i~l~~  147 (230)
                      +++.+..
T Consensus       103 atl~l~~  109 (111)
T 4e71_A          103 ATLILSK  109 (111)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9997653

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=95.41  E-value=0.24  Score=30.59  Aligned_cols=66  Identities=21%  Similarity=0.252  Sum_probs=46.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      |.+.+.... ....++++...|+.+|.+.+    ++++....+..+|.....+.     -+++||.|.++- +.+||
T Consensus         5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~-~V~GG   70 (70)
T 1ryj_A            5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR-VIYGG   70 (70)
T ss_dssp             EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE-CTTCC
T ss_pred             EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe-ccccC
Confidence            555555432 23456777778999998876    46677777779998886554     688999997776 44444

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=95.30  E-value=0.093  Score=36.90  Aligned_cols=65  Identities=32%  Similarity=0.525  Sum_probs=47.9

Q ss_pred             CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 026933          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK  215 (230)
Q Consensus       162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~----~g~-~L~d~-------------~~L~~~~i~~  215 (230)
                      ...+++.|-..+||.++|++|-...  |.|      ++..-|-|    .|+ .|.|.             .||+.|+|++
T Consensus        40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            3568999999999999999998865  444      34566655    233 35543             3899999999


Q ss_pred             CCEEEEEEEec
Q 026933          216 ESTLHLVLRLR  226 (230)
Q Consensus       216 g~~i~l~~~~~  226 (230)
                      |+++.++-+..
T Consensus       120 ga~l~l~~~~~  130 (138)
T 2r2o_A          120 GATVALVPCLT  130 (138)
T ss_dssp             TCEEEEEEC--
T ss_pred             CCEEEEEECCC
Confidence            99999987653

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.21  E-value=0.19  Score=34.76  Aligned_cols=65  Identities=28%  Similarity=0.395  Sum_probs=47.9

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE-CC---e-ecCCC-------------CcccccCCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQ  214 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~-~g---~-~L~d~-------------~~L~~~~i~  214 (230)
                      .+..+++.+-..+||.++|++|-...  |.|      ++.+.|-| .|   + .|.|.             .||+.|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            34568888989999999999998764  433      45677765 22   3 35442             489999999


Q ss_pred             CCCEEEEEEEe
Q 026933          215 KESTLHLVLRL  225 (230)
Q Consensus       215 ~g~~i~l~~~~  225 (230)
                      +|+++-+..+.
T Consensus        95 dgatv~l~~~~  105 (127)
T 3h6n_A           95 EGASLAMSLID  105 (127)
T ss_dssp             TTCEEEEEECC
T ss_pred             CCCEEEEEEcc
Confidence            99999987653

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=95.18  E-value=0.043  Score=34.53  Aligned_cols=66  Identities=14%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      |++.|+........+++++..||++|-+.    .++|++......||+.+..+.      +.+|+.+.++---.||
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~   66 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG   66 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence            56777766545556899999999997654    899999997779998886555      2358888765433333

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=95.13  E-value=0.069  Score=37.58  Aligned_cols=64  Identities=31%  Similarity=0.518  Sum_probs=46.1

Q ss_pred             CcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec----Cc-ccCCC-------------cchhhccccc
Q 026933           86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQK  139 (230)
Q Consensus        86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~-------------~~l~~~~i~~  139 (230)
                      ...+++.|-..+||.++|++|-+..  +.|      ++..-|-|.    |+ .|.|.             .||+.|++.+
T Consensus        40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            3568899999999999999998864  343      445556552    22 25442             3899999999


Q ss_pred             CCceEEEEEe
Q 026933          140 ESTLHLVLRL  149 (230)
Q Consensus       140 ~~~i~l~~~~  149 (230)
                      |+++.++.+.
T Consensus       120 ga~l~l~~~~  129 (138)
T 2r2o_A          120 GATVALVPCL  129 (138)
T ss_dssp             TCEEEEEEC-
T ss_pred             CCEEEEEECC
Confidence            9999887554

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=95.13  E-value=0.052  Score=41.74  Aligned_cols=62  Identities=23%  Similarity=0.386  Sum_probs=49.7

Q ss_pred             EEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEE--ecC---cccCC-CcchhhcccccCCceEEEEEe
Q 026933           88 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FAG---KQLED-GRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        88 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~--~~g---~~L~d-~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      .+.+.++..+|+.+|++.+++.+++|++ ..||.  +..   ..|++ +.||.++++.++..|.+-.+.
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~  209 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN  209 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence            3567789999999999999999999997 68886  222   44555 579999999999988766554

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=94.79  E-value=0.065  Score=34.42  Aligned_cols=46  Identities=11%  Similarity=0.203  Sum_probs=39.9

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCc
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK  124 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~  124 (230)
                      +.|.|...  -++.+.+++..+..+|+.+|+++.++|++...|.|...
T Consensus         6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            55666555  68999999999999999999999999999999999763

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=94.77  E-value=0.078  Score=41.15  Aligned_cols=62  Identities=19%  Similarity=0.287  Sum_probs=49.7

Q ss_pred             EeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEe-cC----cccCC-CcchhhcccccCCceEEEEEee
Q 026933           89 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-AG----KQLED-GRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~-~g----~~L~d-~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      +.+.++..+|+.+|++.+++.++++.+ ..||.. .+    ..|.| +.+|.++++.++..|.+-.+..
T Consensus       154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~  222 (231)
T 3jyu_A          154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE  222 (231)
T ss_dssp             EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred             EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence            556778999999999999999999997 688873 32    34655 6899999999999886665543

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=94.57  E-value=0.16  Score=31.34  Aligned_cols=63  Identities=22%  Similarity=0.283  Sum_probs=45.4

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      .|+|+|+...+ ...++++...|+.+|.+.+    ++++....+..||..+..+.     -+++|+.|.++..
T Consensus         4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~   66 (70)
T 1ryj_A            4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV   66 (70)
T ss_dssp             CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred             eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence            47777765443 2345677778999998875    56777777778998886554     5788999877643

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=94.50  E-value=0.17  Score=31.54  Aligned_cols=68  Identities=12%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             CEEEEEccCCcE-EEEEecCCCcHHHHHHHhhhhhCCCC--CceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKT-ITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gip~--~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |.|+|+....-. ..+++ ...||.+|.+.+....++..  ..-.+..||+...+    .+..+.+++++.++...
T Consensus         1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppv   71 (74)
T 3rpf_C            1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPV   71 (74)
T ss_dssp             CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCB
T ss_pred             CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCC
Confidence            889999875422 34777 67899999999987544332  22344467766442    34568888998887543

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=94.31  E-value=0.26  Score=31.32  Aligned_cols=60  Identities=18%  Similarity=0.380  Sum_probs=52.7

Q ss_pred             EEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933           13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus        13 ~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      +.-.++=.+++..||..++.+.|++-+.-.+++++..|+++++|.+-++..+..+.+.+.
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq   64 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ   64 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence            344667788999999999999999999999999988899999999999999888877654

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=94.27  E-value=0.22  Score=34.53  Aligned_cols=65  Identities=26%  Similarity=0.383  Sum_probs=46.6

Q ss_pred             cCCcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec-C---c-ccCC-------------Ccchhhccc
Q 026933           84 LTGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED-------------GRTLADYNI  137 (230)
Q Consensus        84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d-------------~~~l~~~~i  137 (230)
                      .++..+++.|-..+||.++|++|-+..  +.|      ++.+.|-|. |   + .|.|             =.||++|++
T Consensus        14 ~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V   93 (127)
T 3h6n_A           14 CGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI   93 (127)
T ss_dssp             SCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred             CCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence            345668888889999999999998753  333      456667652 2   2 2443             158999999


Q ss_pred             ccCCceEEEEE
Q 026933          138 QKESTLHLVLR  148 (230)
Q Consensus       138 ~~~~~i~l~~~  148 (230)
                      .+|+++.+..+
T Consensus        94 ~dgatv~l~~~  104 (127)
T 3h6n_A           94 PEGASLAMSLI  104 (127)
T ss_dssp             CTTCEEEEEEC
T ss_pred             CCCCEEEEEEc
Confidence            99999977643

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=93.95  E-value=0.058  Score=37.92  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933           12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus        12 ~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~   46 (230)
                      ..++.|...+|+.++|..|.+.+|+|+++|||+..
T Consensus        57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~   91 (130)
T 2kvr_A           57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM   91 (130)
T ss_dssp             CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred             cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence            45789999999999999999999999999999953

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.83  E-value=0.22  Score=34.08  Aligned_cols=63  Identities=32%  Similarity=0.518  Sum_probs=44.6

Q ss_pred             CcEEeeccCccCcHHHHHHHHhhHh--CCC------CCCeEEEec-C---c-ccCC---------C----cchhhccccc
Q 026933           86 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA-G---K-QLED---------G----RTLADYNIQK  139 (230)
Q Consensus        86 g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~-g---~-~L~d---------~----~~l~~~~i~~  139 (230)
                      ...+++.|-..+||.++|++|-+..  +.|      ++.+.|-|. |   + .|.|         .    .||++|++.+
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            3457888889999999999998753  343      345566652 3   2 2333         1    4899999999


Q ss_pred             CCceEEEEE
Q 026933          140 ESTLHLVLR  148 (230)
Q Consensus       140 ~~~i~l~~~  148 (230)
                      |+++.++.+
T Consensus       106 gatl~l~~~  114 (117)
T 4e74_A          106 GSVVALVSK  114 (117)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999988754

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=93.65  E-value=0.16  Score=32.52  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=38.2

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecC
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG   47 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g   47 (230)
                      ++||..=..++.|+|+++.+..+|..+|.++.++|++.-.|.|..
T Consensus         6 ~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            344444337999999999999999999999999999888888865

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=93.58  E-value=0.18  Score=34.49  Aligned_cols=64  Identities=31%  Similarity=0.499  Sum_probs=47.0

Q ss_pred             CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE-CC---e-ecCCC-------------CcccccCCCC
Q 026933          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-AG---K-QLEDG-------------RTLADYNIQK  215 (230)
Q Consensus       162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~-~g---~-~L~d~-------------~~L~~~~i~~  215 (230)
                      ...+++.+-..+||.++|++|-...  |.|      ++.+.|-| .|   + .|.|.             .||++|+|++
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            3458888889999999999998764  444      34566665 23   2 24331             4899999999


Q ss_pred             CCEEEEEEEe
Q 026933          216 ESTLHLVLRL  225 (230)
Q Consensus       216 g~~i~l~~~~  225 (230)
                      |+++.++-|.
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999998765

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=92.85  E-value=0.6  Score=30.75  Aligned_cols=69  Identities=12%  Similarity=0.269  Sum_probs=47.0

Q ss_pred             CCeeeEEEccC------C-cEEeeccCccCcHHHHHHHHhhHhC-C----------CCCCeEEEecCcccCCCcchhhcc
Q 026933           75 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN  136 (230)
Q Consensus        75 ~~~~v~v~~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-i----------~~~~q~L~~~g~~L~d~~~l~~~~  136 (230)
                      +.|+|.|+...      | ....++++...||.+|.+.+...+. +          ......+..||+....     +.-
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~   82 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE   82 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence            45777777542      2 4567777778899999999987742 1          1234567788877753     567


Q ss_pred             cccCCceEEEEE
Q 026933          137 IQKESTLHLVLR  148 (230)
Q Consensus       137 i~~~~~i~l~~~  148 (230)
                      +++|+.|.++..
T Consensus        83 L~dGDeV~i~pp   94 (98)
T 1vjk_A           83 LKDGDVVGVFPP   94 (98)
T ss_dssp             CCTTCEEEEESC
T ss_pred             CCCCCEEEEECC
Confidence            889999877643

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=92.69  E-value=0.87  Score=29.97  Aligned_cols=61  Identities=10%  Similarity=0.230  Sum_probs=40.6

Q ss_pred             ceEEEEeeccccHHHHHHHhchhcC-C----------CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          163 KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~i~~~~g-i----------~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ....+++.+..||.+|.+.+..... +          ......+..+|+....     +.-+++||.|.++- +.+||
T Consensus        27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~p-pv~GG   98 (98)
T 1vjk_A           27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVFP-PVSGG   98 (98)
T ss_dssp             SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEES-CC---
T ss_pred             CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEEC-CCCCC
Confidence            3567777778899999999887641 1          1244566678876652     56789999997755 44443

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=92.63  E-value=0.52  Score=30.48  Aligned_cols=58  Identities=12%  Similarity=0.171  Sum_probs=41.6

Q ss_pred             EEEeecc-ccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          166 TLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       166 ~~~v~~~-~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ++++++. .||.+|.+.+    ++++....+..+|.....+ ...+.-+++||.|.++-- .+||
T Consensus        29 ~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~-V~GG   87 (87)
T 1tyg_B           29 DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHF-VGGG   87 (87)
T ss_dssp             EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEE-CCC-
T ss_pred             EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcc-cccC
Confidence            3445665 8999998876    5667777777999887643 455677999999988764 4444

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=92.24  E-value=0.69  Score=36.87  Aligned_cols=72  Identities=17%  Similarity=0.276  Sum_probs=54.7

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEE---CC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AG--KQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~---~g--~~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      +.+.|...+| ++.+++++.+|+.++-+.|+...|+.... +-|.+   .|  .-|+.++++.+.+++.+....+.+|.
T Consensus         2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~   79 (294)
T 1ef1_A            2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (294)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence            4566777777 67899999999999999999999986654 44544   33  24788889988877777777666654

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=91.26  E-value=0.85  Score=29.46  Aligned_cols=59  Identities=12%  Similarity=0.165  Sum_probs=40.7

Q ss_pred             cCCcEEEEEecCC-CcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            8 LTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         8 ~~g~~~~~~v~~~-~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      .+|+.  +++..+ .||.+|.+.+    ++++..-....||..+.. ..+.+..+.+++++.++...
T Consensus        25 vNGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V   84 (87)
T 1tyg_B           25 LNGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFV   84 (87)
T ss_dssp             ETTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEEC
T ss_pred             ECCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEccc
Confidence            35654  445676 8999999886    566665556678866643 34556678999999887543

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=91.08  E-value=1.1  Score=31.00  Aligned_cols=61  Identities=34%  Similarity=0.513  Sum_probs=42.7

Q ss_pred             ceEEEEeeccccHHHHHHHhchhc----CCCC----CceEEEEC-C---eecCC----------C----CcccccCCCCC
Q 026933          163 KTITLEVESSDTIDNVKAKIQDKE----GIPP----DQQRLIFA-G---KQLED----------G----RTLADYNIQKE  216 (230)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~i~~~~----gi~~----~~~~L~~~-g---~~L~d----------~----~~L~~~~i~~g  216 (230)
                      +.+++.+-..+||.++|++|-...    |.|.    +.+.|-|. |   ..|.|          .    .||+.|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            468888889999999999987642    6543    44555541 2   22222          1    37889999999


Q ss_pred             CEEEEEE
Q 026933          217 STLHLVL  223 (230)
Q Consensus       217 ~~i~l~~  223 (230)
                      +++-++-
T Consensus       119 atlal~k  125 (126)
T 3kuz_A          119 STIKVFK  125 (126)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEee
Confidence            9998764

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=90.67  E-value=1.2  Score=28.79  Aligned_cols=71  Identities=13%  Similarity=0.130  Sum_probs=44.5

Q ss_pred             CEEEEEccC------CcEEEEEecCCCcHHHHHHHhhhhhCC------C-------CCceeEEecCccccCCcccccccc
Q 026933            1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI   61 (230)
Q Consensus         1 m~v~v~~~~------g~~~~~~v~~~~tv~~lK~~i~~~~gi------p-------~~~q~l~~~g~~l~d~~~l~~~~i   61 (230)
                      |+|+|+...      |....++. +..||.+|...+...+.-      .       ...-.+..||+...... -.++.+
T Consensus         1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~-~~~~~L   78 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSG-GLATAI   78 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTT-GGGCBC
T ss_pred             CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcC-CCCcCC
Confidence            788888653      43335664 578999999999887620      0       01234556776655322 235668


Q ss_pred             ccCCeEEEEEEe
Q 026933           62 QKESTLHLVLRL   73 (230)
Q Consensus        62 ~~~~~i~l~~~~   73 (230)
                      .+++++.++...
T Consensus        79 ~~gDeV~i~Ppv   90 (93)
T 3dwg_C           79 ADGDSVTILPAV   90 (93)
T ss_dssp             CTTCEEEEEECC
T ss_pred             CCCCEEEEECCC
Confidence            899998887654

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=90.45  E-value=1.3  Score=35.72  Aligned_cols=74  Identities=11%  Similarity=0.127  Sum_probs=56.4

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEE--CCe--ecCCCCcccccCCCCCCEEEEEEEe
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~--~g~--~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      ..+.+.|...+| ++.+++++.+|+.++-..|+...|+.... +-|.+  .+.  -|+.++++.+.+++.+....+.+|.
T Consensus        21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~   99 (314)
T 1h4r_A           21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA   99 (314)
T ss_dssp             CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred             CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence            345677777888 78899999999999999999999987644 44544  343  3788889999887777766666654

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=90.24  E-value=0.7  Score=29.17  Aligned_cols=63  Identities=14%  Similarity=0.277  Sum_probs=44.5

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCC-CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      +|+.+.+......||.+|-+.    .+++ +....+..||..+..+ ...+.-+++|+.|.++....||
T Consensus         6 NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG   69 (78)
T 2k5p_A            6 NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG   69 (78)
T ss_dssp             TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred             CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence            566555432256899998765    4777 7778888999877543 5667789999999887544443

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=90.17  E-value=0.95  Score=28.91  Aligned_cols=31  Identities=13%  Similarity=0.213  Sum_probs=28.4

Q ss_pred             ccCCcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933            7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIP   37 (230)
Q Consensus         7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip   37 (230)
                      ..++..+.+.|+++.+..+|+.+|..+..+.
T Consensus        18 yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~   48 (85)
T 1ip9_A           18 YYKDDIFALMLKGDTTYKELRSKIAPRIDTD   48 (85)
T ss_dssp             CBTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred             EecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            4478899999999999999999999999994

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=90.15  E-value=2.1  Score=29.51  Aligned_cols=60  Identities=35%  Similarity=0.494  Sum_probs=42.8

Q ss_pred             cEEEEEecCCCcHHHHHHHhhhhh----CCCCC----ceeEEe-cC---ccc----------cC----CccccccccccC
Q 026933           11 KTITLEVESSDTIDNVKAKIQDKE----GIPPD----QQRLIF-AG---KQL----------ED----GRTLADYNIQKE   64 (230)
Q Consensus        11 ~~~~~~v~~~~tv~~lK~~i~~~~----gip~~----~q~l~~-~g---~~l----------~d----~~~l~~~~i~~~   64 (230)
                      ..+++.|-.-+||.++|+||-+..    |.|.+    ...|-| .|   ..|          ++    =.||+.|++.++
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            468899999999999999987763    77753    334444 22   112          22    157889999999


Q ss_pred             CeEEEE
Q 026933           65 STLHLV   70 (230)
Q Consensus        65 ~~i~l~   70 (230)
                      +++.++
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            998775

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=90.14  E-value=1.6  Score=26.94  Aligned_cols=57  Identities=14%  Similarity=0.374  Sum_probs=38.3

Q ss_pred             EEeeccccHHHHHHHhchhcCCCC--CceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          167 LEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       167 ~~v~~~~tV~~LK~~i~~~~gi~~--~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +++ +..||.+|.+.+....++..  ....+..+|....+    .+.-+++||.|.+.--..||
T Consensus        16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C           16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred             Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence            555 56899999999987543322  44566677766432    35568999999777655544

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=90.06  E-value=1.4  Score=28.51  Aligned_cols=45  Identities=16%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             EEEEc-cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEEecC
Q 026933            3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG   47 (230)
Q Consensus         3 v~v~~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~g   47 (230)
                      |+||. .+|....+.++++.+..+|.+++.+.+++++.+ -.+.|..
T Consensus         7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D   53 (89)
T 1vd2_A            7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID   53 (89)
T ss_dssp             EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred             EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence            45553 478999999999999999999999999998655 3445653

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=89.63  E-value=0.34  Score=33.97  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             EeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe
Q 026933           89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  121 (230)
Q Consensus        89 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~  121 (230)
                      ..+.|..++|+.+|+..|++.+|+|++.|||..
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~   90 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP   90 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence            356888899999999999999999999999873

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=89.36  E-value=1.6  Score=38.54  Aligned_cols=73  Identities=15%  Similarity=0.273  Sum_probs=55.9

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEEEC---C--eecCCCCcccccCCCCCCEEEEEEEe
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~~~---g--~~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      .+.+.|...+| ++.+.+++.+|+.+|-..|+...|+... .+-|.|.   |  .-|+.++++.+.+++.+....+.+|.
T Consensus         4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv   82 (575)
T 2i1j_A            4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA   82 (575)
T ss_dssp             EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred             eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence            35667777777 6789999999999999999999998654 3455542   2  35777889988888777777776664

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=89.32  E-value=0.99  Score=27.09  Aligned_cols=60  Identities=15%  Similarity=0.307  Sum_probs=41.1

Q ss_pred             cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       161 ~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +|+.+  ++ +..|+.+|.+.+    ++++....+..+|.....+ ...+.-+++||.|.++- +.+||
T Consensus         5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~-~V~GG   64 (64)
T 2cu3_A            5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA-LMQGG   64 (64)
T ss_dssp             TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE-CCCC-
T ss_pred             CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe-ecccC
Confidence            45544  34 568999998876    4566777777888877533 34456789999998876 44444

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=89.13  E-value=0.63  Score=28.17  Aligned_cols=57  Identities=12%  Similarity=0.210  Sum_probs=40.5

Q ss_pred             EEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       167 ~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +++....|+.+|.+.+    ++++....+..+|.....+ ...+.-+++||.|.++- +.+||
T Consensus        10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~-~V~GG   66 (66)
T 1f0z_A           10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ-VIAGG   66 (66)
T ss_dssp             ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE-SCCCC
T ss_pred             EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe-ecccC
Confidence            4556678999998876    4667777777888877532 23456689999998776 44444

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=89.01  E-value=1.7  Score=27.78  Aligned_cols=61  Identities=15%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             ceEEEEeeccccHHHHHHHhchhcC-C-----C-----CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~i~~~~g-i-----~-----~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ....++++...||.+|.+.+...+. +     .     .....+..+|+....     +.-+++||.|.+.--..||
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG   89 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG   89 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence            4567788778899999999988752 1     1     122566688877654     4568999999776645444

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=88.28  E-value=0.49  Score=29.90  Aligned_cols=62  Identities=15%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             cCceEEEEee--ccccHHHHHHHhchhcCCC-CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          161 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       161 ~~~~~~~~v~--~~~tV~~LK~~i~~~~gi~-~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +|+.+  +++  ...|+.+|-+.+    +++ +....+-.+|..+.. ....+.-+++||.|.++--..||.
T Consensus         6 NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG~   70 (78)
T 2k5p_A            6 NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGGK   70 (78)
T ss_dssp             TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCSC
T ss_pred             CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCCC
Confidence            45544  444  568999987644    677 777778899988864 356678899999998887666664

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=88.16  E-value=1.1  Score=28.12  Aligned_cols=59  Identities=7%  Similarity=0.153  Sum_probs=39.5

Q ss_pred             eEEEEeeccccHHHHHHHhchhcC-----CCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~g-----i~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ...++ .+..||.+|.+.+.....     ++.....+..+|+....     +.-+++||.|.+.--..||
T Consensus        18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred             eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence            34455 456799999999876642     23344567788877642     5568999999776544443

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=87.96  E-value=2.3  Score=27.12  Aligned_cols=46  Identities=13%  Similarity=0.090  Sum_probs=34.7

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE-ecC
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG  123 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g  123 (230)
                      ..|+|.+. .++..|.+.|+.+.+..+|+.+|.++..+.  ...+. |++
T Consensus        11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykd   57 (85)
T 1ip9_A           11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLF   57 (85)
T ss_dssp             CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCS
T ss_pred             CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecC
Confidence            34566664 345689999999999999999999999883  44444 543

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=87.83  E-value=1.6  Score=27.91  Aligned_cols=60  Identities=13%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             cEEeeccCccCcHHHHHHHHhhHhC-C-----C-----CCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           87 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        87 ~~~~~~v~~~~tV~~lK~~i~~~~~-i-----~-----~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      ....++++...||++|.+.+..++. +     .     .....+..||+....     +.-+++|+.|.++....|
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~G   88 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSG   88 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCC
Confidence            5567888888899999999988763 1     1     022567788877764     456888999987754443

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=87.78  E-value=2.3  Score=27.52  Aligned_cols=48  Identities=8%  Similarity=0.180  Sum_probs=37.4

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEecCcc
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQ  125 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~  125 (230)
                      |+|.+. .+|..+.+.++++.+..+|.+++.+.++++.. ...+.|....
T Consensus         7 vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe   55 (89)
T 1vd2_A            7 VRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE   55 (89)
T ss_dssp             EEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred             EEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence            445543 45678888999999999999999999998754 4788887643

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=87.04  E-value=3  Score=34.39  Aligned_cols=53  Identities=21%  Similarity=0.309  Sum_probs=41.5

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc--ccCCcccccccc
Q 026933            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--LEDGRTLADYNI   61 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~--l~d~~~l~~~~i   61 (230)
                      .-....+.+++..|+.++++++++.++++++.|.|.+.+..  ++....-..|.-
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~  374 (396)
T 4eut_A          320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK  374 (396)
T ss_dssp             TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred             cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence            34567789999999999999999999999999999998733  333444444443

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=86.65  E-value=0.79  Score=41.26  Aligned_cols=51  Identities=31%  Similarity=0.602  Sum_probs=42.4

Q ss_pred             CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec-CccccCCcccccc
Q 026933            9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY   59 (230)
Q Consensus         9 ~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~-g~~l~d~~~l~~~   59 (230)
                      .+....+.++++.|+.+++..|++.+|||++.|.+.+. |..+++......|
T Consensus       320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~  371 (676)
T 3qa8_A          320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY  371 (676)
T ss_dssp             SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred             ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence            45667889999999999999999999999999999985 5666666565554

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=86.45  E-value=2.7  Score=25.57  Aligned_cols=61  Identities=13%  Similarity=0.155  Sum_probs=39.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+++|...+|+.  .++..+.|+.++-..+....+  ...-....+|+..+-+     +.+.+++.+.++
T Consensus         1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veiv   61 (73)
T 2kmm_A            1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVL   61 (73)
T ss_dssp             CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred             CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence            889998888886  567789999999888754332  1112223677655544     444556666654

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=86.17  E-value=3.8  Score=32.47  Aligned_cols=71  Identities=17%  Similarity=0.269  Sum_probs=52.0

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCC-eEEEe---cCc--ccCCCcchhhcccccCCceEEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~---~g~--~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      +.+.|...+| ++.+.+++++|+.++-..|++..|+.... .-|.+   +|.  -|+.++++.+.++..+....+..+
T Consensus         2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr   78 (294)
T 1ef1_A            2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR   78 (294)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred             EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence            5677777887 67899999999999999999999976543 46665   232  367778888876655555555443

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=85.98  E-value=1.5  Score=27.49  Aligned_cols=58  Identities=3%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             cEEeeccCccCcHHHHHHHHhhHhC-----CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           87 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        87 ~~~~~~v~~~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      ....++ ....||.+|.+.+...+.     ++.....+..||+....     +..+++|+.|.++....
T Consensus        17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~   79 (81)
T 1fm0_D           17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVT   79 (81)
T ss_dssp             SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCC
T ss_pred             CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCC
Confidence            345666 567799999999876542     23344567788877643     45688999987764433

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=85.83  E-value=1.1  Score=27.83  Aligned_cols=59  Identities=14%  Similarity=0.192  Sum_probs=40.2

Q ss_pred             eEEEEeeccccHHHHHHHhchhcCCCCCce--EEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       164 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~--~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ...+++....||.+|.+.+..... .....  .+..+|+....     +.-+++||.|.+.- +.+||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p-pv~GG   77 (77)
T 2q5w_D           17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP-PVSGG   77 (77)
T ss_dssp             EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEEC-SCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEEC-CCCCC
Confidence            456666677899999999877642 01233  66788887764     35689999997755 45544

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=85.57  E-value=1.5  Score=27.13  Aligned_cols=56  Identities=11%  Similarity=0.139  Sum_probs=39.4

Q ss_pred             cEEeeccCccCcHHHHHHHHhhHhCCCCCCe--EEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        87 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q--~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      ....++++...||.+|.+.+...+. .....  .+..||+....+     .-+++|+.|.++..
T Consensus        16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~pp   73 (77)
T 2q5w_D           16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPP   73 (77)
T ss_dssp             SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECC
Confidence            4467777788899999999877642 11233  677888877643     56889999877643

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=84.77  E-value=4.4  Score=35.64  Aligned_cols=65  Identities=28%  Similarity=0.467  Sum_probs=46.4

Q ss_pred             CceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 026933          162 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK  215 (230)
Q Consensus       162 ~~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~----~g~-~L~d~-------------~~L~~~~i~~  215 (230)
                      .+.+++.|-..+||.++|++|-...  |.|      ++.+.|-|    .|+ .|.|.             .||++|+|++
T Consensus       246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D  325 (627)
T 3ig3_A          246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD  325 (627)
T ss_dssp             -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence            3568899999999999999998764  433      45566665    233 34331             3899999999


Q ss_pred             CCEEEEEEEec
Q 026933          216 ESTLHLVLRLR  226 (230)
Q Consensus       216 g~~i~l~~~~~  226 (230)
                      |+++.++-+..
T Consensus       326 ga~v~L~p~~~  336 (627)
T 3ig3_A          326 GSLVALVPKQV  336 (627)
T ss_dssp             TCEEEEEEC--
T ss_pred             CceEEEEeccc
Confidence            99999987653

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=84.63  E-value=5  Score=35.35  Aligned_cols=64  Identities=31%  Similarity=0.515  Sum_probs=45.9

Q ss_pred             ceEEEEeeccccHHHHHHHhchhc--CCC------CCceEEEEC----Ce-ecCCC-------------CcccccCCCCC
Q 026933          163 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE  216 (230)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~~~L~~~----g~-~L~d~-------------~~L~~~~i~~g  216 (230)
                      +.+++.|-..+||.++|++|-...  |.|      ++.+.|-|.    |+ .|.|.             .||++|+|++|
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            468899999999999999998643  443      355666652    23 35442             48999999999


Q ss_pred             CEEEEEEEec
Q 026933          217 STLHLVLRLR  226 (230)
Q Consensus       217 ~~i~l~~~~~  226 (230)
                      +++.++-+..
T Consensus       354 a~v~L~p~~~  363 (644)
T 3hm6_X          354 ATVALVPCLT  363 (644)
T ss_dssp             CEEEEEEC--
T ss_pred             cEEEEEeccc
Confidence            9998876643

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=84.49  E-value=3.9  Score=32.79  Aligned_cols=74  Identities=11%  Similarity=0.127  Sum_probs=54.8

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEe--cC--cccCCCcchhhcccccCCceEEEEE
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AG--KQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~--~g--~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      ...+.+.|...+| ++.+.+++++|+.++-..|++..|+... ..-|.+  +|  .-|+.++++.+.+...+....+..+
T Consensus        20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr   98 (314)
T 1h4r_A           20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   98 (314)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence            3457788888898 7889999999999999999999997653 346655  33  2367788888877665555544443

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=84.36  E-value=6.8  Score=26.50  Aligned_cols=65  Identities=17%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             cEEeeccCc---cCcHHHHHHHHhhHhC-CC---------CC-CeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           87 KTITLEVES---SDTIDNVKAKIQDKEG-IP---------PD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        87 ~~~~~~v~~---~~tV~~lK~~i~~~~~-i~---------~~-~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      +.+.++++.   ..||.+|...+.+++. ..         .. ...+..|+...+-- -=.++-+++|+.|.++....+|
T Consensus        30 ~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~gldt~L~dGDeV~iip~vaGG  108 (114)
T 1wgk_A           30 KKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GELDYQLQDQDSILFISTLHGG  108 (114)
T ss_dssp             SEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHH-CTTTCBCCSSEEEEEEECSCCC
T ss_pred             eEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeecc-CCcCcCCCCCCEEEEeCCCCCC
Confidence            356677773   3699999999998861 10         11 12233444321100 0134678899998887666665

>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}

Probab=84.31  E-value=3.7  Score=26.31  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=45.3

Q ss_pred             EEEeeecCc-eEEEEeec-cccHHHHHHHhchhcCCCCCceEEE-ECC---eecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          155 IFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLI-FAG---KQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       155 i~v~~~~~~-~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~~~L~-~~g---~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      ++.+..+.+ .-.+.++. ..+|.+||++|..+.++.....-|. ++.   ++..|+    ..-|..++.|.+...+.+|
T Consensus         9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd----~~lIprnssViVrRvP~~~   84 (86)
T 2c7h_A            9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD----NALIPKNSSVIVRRIPIGG   84 (86)
T ss_dssp             EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECST----TCEEETTCCEEEEEEECSS
T ss_pred             EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCC----ceEEecCCEEEEEeccCcc
Confidence            344444443 34577774 5699999999999887765566554 443   333333    2347788888776667665


Q ss_pred             C
Q 026933          229 G  229 (230)
Q Consensus       229 ~  229 (230)
                      .
T Consensus        85 ~   85 (86)
T 2c7h_A           85 V   85 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=83.70  E-value=1.6  Score=26.34  Aligned_cols=58  Identities=9%  Similarity=0.150  Sum_probs=40.2

Q ss_pred             CCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           85 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        85 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      +|+.+  +++...|+.+|.+.+    ++++....+..||...... ...+.-+++|+.|.++...
T Consensus         6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V   63 (66)
T 1f0z_A            6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVI   63 (66)
T ss_dssp             SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESC
T ss_pred             CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeec
Confidence            56544  556778999998876    5677777777888776431 2334568899999877543

>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A

Probab=83.58  E-value=2.3  Score=28.88  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=43.5

Q ss_pred             CEEEEEccC------C--cEEEEEecC---CCcHHHHHHHhhhhhCCCCCceeEEec-Ccc------ccCCcc--c---c
Q 026933            1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ------LEDGRT--L---A   57 (230)
Q Consensus         1 m~v~v~~~~------g--~~~~~~v~~---~~tv~~lK~~i~~~~gip~~~q~l~~~-g~~------l~d~~~--l---~   57 (230)
                      |+|+|+...      |  +.+.++++.   .+||.+|-..+.+.+  |..+.+|+.. |..      +-++..  +   .
T Consensus        12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl   89 (114)
T 1wgk_A           12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL   89 (114)
T ss_dssp             EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred             cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence            678888654      3  366788883   369999999999887  2223333322 211      111221  1   3


Q ss_pred             ccccccCCeEEEEEEecC
Q 026933           58 DYNIQKESTLHLVLRLRG   75 (230)
Q Consensus        58 ~~~i~~~~~i~l~~~~~~   75 (230)
                      ++.+.+++++.++....+
T Consensus        90 dt~L~dGDeV~iip~vaG  107 (114)
T 1wgk_A           90 DYQLQDQDSILFISTLHG  107 (114)
T ss_dssp             TCBCCSSEEEEEEECSCC
T ss_pred             CcCCCCCCEEEEeCCCCC
Confidence            467888898777654433

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=82.82  E-value=1.6  Score=26.11  Aligned_cols=59  Identities=14%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        84 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      .+|+.+.+   ...||.+|.+.+    ++++....+..||.....+ ...+.-+++|+.|.++....
T Consensus         4 vNg~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~   62 (64)
T 2cu3_A            4 LNGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQ   62 (64)
T ss_dssp             ETTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCC
T ss_pred             ECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecc
Confidence            36666544   567999998876    4666677777888776432 23345688999998775433

>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=82.66  E-value=6.3  Score=26.22  Aligned_cols=72  Identities=10%  Similarity=0.211  Sum_probs=48.4

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcc--cCCCcchhhcccccCCceEEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~--L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      +...|...+...+.+.++.+.|+.+++..++++.+...+.+.|.   ++|..  |+++..--.-.+.-++.+++..+
T Consensus        10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k   86 (104)
T 1wgy_A           10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK   86 (104)
T ss_dssp             CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred             eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence            33444455666788899999999999999999999877677776   56733  44443332333555566655543

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=82.40  E-value=0.41  Score=30.10  Aligned_cols=54  Identities=9%  Similarity=0.217  Sum_probs=38.3

Q ss_pred             EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .+++++..||.+|.+.+.    +++....+..+|+....+     .-+++||.|.++- +.+||
T Consensus        24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p-pv~GG   77 (77)
T 1rws_A           24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP-VVSGG   77 (77)
T ss_dssp             CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC-CCCCC
T ss_pred             EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc-ccccC
Confidence            445566789999987764    566667777899877653     5689999997665 44443

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=82.32  E-value=8.1  Score=25.18  Aligned_cols=71  Identities=11%  Similarity=0.134  Sum_probs=41.3

Q ss_pred             CEEEEEccC-------C-cEEEEEec--CCCcHHHHHHHhhhhhCCC-CCc------e------eEEecCccccCCcccc
Q 026933            1 MQIFVKTLT-------G-KTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQ------Q------RLIFAGKQLEDGRTLA   57 (230)
Q Consensus         1 m~v~v~~~~-------g-~~~~~~v~--~~~tv~~lK~~i~~~~gip-~~~------q------~l~~~g~~l~d~~~l~   57 (230)
                      |+|+|+...       | +...+++.  ++.||++|...+.+.+.-. +..      .      .+..|+...+-. .=.
T Consensus         2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~   80 (99)
T 2qjl_A            2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEK   80 (99)
T ss_dssp             EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGG
T ss_pred             cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCC
Confidence            578887643       2 45667777  7899999999998876311 110      0      122344321100 013


Q ss_pred             ccccccCCeEEEEEE
Q 026933           58 DYNIQKESTLHLVLR   72 (230)
Q Consensus        58 ~~~i~~~~~i~l~~~   72 (230)
                      ++.+.+++++.++..
T Consensus        81 d~~L~dgDeVa~~Pp   95 (99)
T 2qjl_A           81 DYILEDGDIISFTST   95 (99)
T ss_dssp             GCBCCTTCEEEEEEC
T ss_pred             CcCcCCCCEEEEECC
Confidence            456888898877644

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=81.79  E-value=8  Score=24.76  Aligned_cols=61  Identities=13%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             EEEeeccccHHHHHHHhchhcC-----C-C-------CCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEG-----I-P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~g-----i-~-------~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .++. +..||.+|.+.+..++.     + .       .....+..+|....+..-+ +.-+++||.|.++--..||
T Consensus        20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG   93 (93)
T 3dwg_C           20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG   93 (93)
T ss_dssp             EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred             EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence            4554 45799999999988752     0 1       1135666788766543222 4568999999777655554

>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=81.48  E-value=7.9  Score=25.74  Aligned_cols=66  Identities=9%  Similarity=0.211  Sum_probs=49.4

Q ss_pred             cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE---ecC--ccccCCccccccccccCCeEEEEEEe
Q 026933            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g--~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      .+..-+++.+..+.|+.+++..+.++.+...+.+.|.   ++|  ..++++..--.-.+.-+.++++..+.
T Consensus        17 ~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd   87 (104)
T 1wgy_A           17 TEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD   87 (104)
T ss_dssp             SSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred             ccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence            3556778999999999999999999999887778877   456  33555544444556667788777654

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=80.99  E-value=6  Score=34.81  Aligned_cols=72  Identities=15%  Similarity=0.283  Sum_probs=53.9

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCC-CeEEEec---C--cccCCCcchhhcccccCCceEEEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~---g--~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      .+.+.|...+| ++.+.+++++|+.+|-..|+...|+... .+-|.+.   |  ..|+.+.++.+.++..+..+.+..+
T Consensus         4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR   81 (575)
T 2i1j_A            4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR   81 (575)
T ss_dssp             EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred             eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence            46778888888 6789999999999999999999998643 4566653   2  3466778888877666666555444

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=80.83  E-value=1.9  Score=28.48  Aligned_cols=28  Identities=25%  Similarity=0.204  Sum_probs=26.1

Q ss_pred             CcEEEEEecCCCcHHHHHHHhhhhhCCC
Q 026933           10 GKTITLEVESSDTIDNVKAKIQDKEGIP   37 (230)
Q Consensus        10 g~~~~~~v~~~~tv~~lK~~i~~~~gip   37 (230)
                      +..+.+.|+++.+..+|..+|.++++++
T Consensus        22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~   49 (98)
T 1q1o_A           22 SEIFTLLVEKVWNFDDLIMAINSKISNT   49 (98)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence            6689999999999999999999999886

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=80.69  E-value=4.7  Score=25.58  Aligned_cols=62  Identities=13%  Similarity=0.219  Sum_probs=39.4

Q ss_pred             EEEeeccccHHHHHHHhchhcC------C-----CCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~g------i-----~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      .++++...||.+|.+.+.....      +     ......+..+|+..... .-.+.-+++||.|.++- +.+||
T Consensus        18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p-pv~GG   90 (90)
T 2g1e_A           18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP-PVAGG   90 (90)
T ss_dssp             EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC-CTTCC
T ss_pred             EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC-CCCCC
Confidence            3455556899999999887741      1     11445666888766422 12345689999997765 44444

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=80.65  E-value=0.68  Score=29.02  Aligned_cols=50  Identities=8%  Similarity=0.183  Sum_probs=36.5

Q ss_pred             eeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        90 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      .++++...||.+|.+.+    +++.....+..||+....+     .-+++|+.|.++..
T Consensus        24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~pp   73 (77)
T 1rws_A           24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPV   73 (77)
T ss_dssp             CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCC
T ss_pred             EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcc
Confidence            45667778999988765    4677777777899887654     56788998876543

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=80.43  E-value=4.1  Score=32.52  Aligned_cols=74  Identities=8%  Similarity=0.011  Sum_probs=52.0

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCc-eEEEEC---C--eecCCCCcccccCCCCCCEEEEEEE
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-~~L~~~---g--~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      ..+.+.|...+|....+++++.+|+.+|-..|+.+.|+.... +-|.+.   |  .-|+..+++.+........+.+.++
T Consensus        16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk   95 (296)
T 3qij_A           16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK   95 (296)
T ss_dssp             -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred             ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence            346678888899999999999999999999999999986544 445432   2  3467778887765444445544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-38
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-38
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-38
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	4e-38
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	4e-38
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	3e-37
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	6e-38
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	6e-38
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	2e-37
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-35
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-35
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-35
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	4e-34
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	4e-34
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	4e-34
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-32
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-32
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	2e-32
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-32
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-32
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	2e-32
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-32
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	5e-32
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-29
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	5e-32
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	5e-32
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	5e-32
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	7e-32
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	7e-32
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	8e-32
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	7e-31
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	3e-30
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	9e-30
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-30
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-30
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-30
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-30
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-30
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	5e-30
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	5e-30
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	4e-29
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-27
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	2e-29
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	2e-29
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	4e-29
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-29
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-29
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-29
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-29
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-29
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	3e-29
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-28
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-28
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-28
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	4e-28
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	4e-28
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	1e-27
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	9e-28
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	9e-28
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	9e-28
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	1e-26
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	1e-26
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	6e-26
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-26
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-26
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	3e-21
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	4e-25
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	4e-25
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	4e-25
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	9e-25
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	9e-25
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	9e-25
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-24
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-24
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	5e-24
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	2e-24
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	2e-24
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	2e-24
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	6e-24
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	6e-24
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	6e-24
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-23
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-23
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-23
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	8e-23
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	8e-23
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	8e-23
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-22
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	3e-22
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	7e-22
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	1e-21
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-21
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-21
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-21
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-21
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-21
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-19
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-19
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	4e-19
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	2e-19
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	2e-19
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	2e-19
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	3e-19
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	3e-19
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-18
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	4e-18
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	4e-18
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	2e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-18
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-18
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-18
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-17
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-17
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-17

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 3e-38
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61 IQKESTLHLVLRLRGG 76
          IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 3e-38
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 137 IQKESTLHLVLRLRGG 152
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (316), Expect = 3e-38
 Identities = 73/76 (96%), Positives = 75/76 (98%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 213 IQKESTLHLVLRLRGG 228
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 4e-38
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 136 NIQKESTLHLVLRLRG 151
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  125 bits (315), Expect = 4e-38
 Identities = 26/76 (34%), Positives = 49/76 (64%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           GM +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 212 NIQKESTLHLVLRLRG 227
           +++++S +H+V R R 
Sbjct: 62  DLEQQSIVHIVQRPRR 77

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  123 bits (310), Expect = 3e-37
 Identities = 25/75 (33%), Positives = 48/75 (64%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M +FV+  +     +EV+S  +I  +K  +  ++G+P DQ R+IFAGK+L +  T+ + +
Sbjct: 3  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 61 IQKESTLHLVLRLRG 75
          ++++S +H+V R R 
Sbjct: 63 LEQQSIVHIVQRPRR 77

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 6e-38
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 136 NIQKESTLHLVLRLRGG 152
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 6e-38
 Identities = 27/77 (35%), Positives = 42/77 (54%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G+Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y
Sbjct: 7   GIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIY 66

Query: 212 NIQKESTLHLVLRLRGG 228
            IQ   TL L  +   G
Sbjct: 67  GIQDSDTLILSKKKGSG 83

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (311), Expect = 2e-37
 Identities = 26/76 (34%), Positives = 41/76 (53%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +Q+FVK   G +    +  +  I  +K +I+D++G+P  QQ+L F G+ L+D   L  Y 
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 61 IQKESTLHLVLRLRGG 76
          IQ   TL L  +   G
Sbjct: 68 IQDSDTLILSKKKGSG 83

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  118 bits (297), Expect = 2e-35
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 61 IQKESTLHLVLRL 73
          I+  S LHLVL L
Sbjct: 61 IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  118 bits (297), Expect = 2e-35
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 137 IQKESTLHLVLRL 149
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  118 bits (297), Expect = 2e-35
 Identities = 45/73 (61%), Positives = 57/73 (78%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           M I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 213 IQKESTLHLVLRL 225
           I+  S LHLVL L
Sbjct: 61  IEGGSVLHLVLAL 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (288), Expect = 4e-34
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 61 IQKESTLHLVLRL 73
          ++  ST+ + LRL
Sbjct: 64 LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (288), Expect = 4e-34
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 137 IQKESTLHLVLRL 149
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (288), Expect = 4e-34
 Identities = 25/73 (34%), Positives = 41/73 (56%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I V+   G++ T EV  + T+ ++K ++   EG+  D   L F GK LED   L +Y 
Sbjct: 4   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 63

Query: 213 IQKESTLHLVLRL 225
           ++  ST+ + LRL
Sbjct: 64  LKPLSTVFMNLRL 76

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-32
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 2  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1  DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 61 I-------QKESTLHLVLRLRGGMQIFVKT 83
                  Q  +T+ L  R     +     
Sbjct: 61 FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 1e-32
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 78  QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 137 I-------QKESTLHLVLRLRGGMQIFVKT 159
                   Q  +T+ L  R     +     
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEALCIE 90

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 2e-32
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 154 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            +F+     K TI  + + S T+  +K  ++     PPD+QRL    + L+DG+TL +  
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 213 I-------QKESTLHLVLRLRGG 228
                   Q  +T+ L  R    
Sbjct: 61  FTSQTARPQAPATVGLAFRADDT 83

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 2e-32
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 61 IQKESTLHLVLR 72
          +     +HLV R
Sbjct: 61 VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 2e-32
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 137 IQKESTLHLVLR 148
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (277), Expect = 2e-32
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKTL  +T T  V +   +   K  I     IP ++QRLI+ G+ L+D + L +YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 213 IQKESTLHLVLR 224
           +     +HLV R
Sbjct: 61  VGG-KVIHLVER 71

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 5e-32
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 54  RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 109
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 110 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (276), Expect = 5e-32
 Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 130 RTLADYNIQKESTLHLVLRLRGG----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 185
           +  + ++    S   LV R   G    +++      GK + ++  + DTI ++K  I  +
Sbjct: 2   KGSSHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61

Query: 186 EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
            G   ++  L       +D  +L DY I     L L  +
Sbjct: 62  TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (260), Expect = 1e-29
 Identities = 16/72 (22%), Positives = 31/72 (43%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++      GK + ++  + DTI ++K  I  + G   ++  L       +D  +L DY 
Sbjct: 29  IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 61  IQKESTLHLVLR 72
           I     L L  +
Sbjct: 89  IHDGMNLELYYQ 100

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (275), Expect = 5e-32
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 8  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 67
          L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 68 HLVLRLRG 75
          HL L+ RG
Sbjct: 79 HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (275), Expect = 5e-32
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 84  LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 144 HLVLRLRG 151
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (275), Expect = 5e-32
 Identities = 21/68 (30%), Positives = 39/68 (57%)

Query: 160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 219
           L G+ +   +  +D +  +K KI +  G+P  +Q+L + G  ++D  +LA YN+   + +
Sbjct: 19  LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 220 HLVLRLRG 227
           HL L+ RG
Sbjct: 79  HLALKERG 86

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 7e-32
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 57
          MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 58 DYNIQKESTLHLVLRLRGGMQ 78
          +Y I +++ + +++     + 
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 7e-32
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 3/81 (3%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 133
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 134 DYNIQKESTLHLVLRLRGGMQ 154
           +Y I +++ + +++     + 
Sbjct: 61  EYKIDEKNFVVVMVTKPKAVS 81

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 8e-32
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLA 209
           MQ+ +KTL  +T  ++++  +T+  +K KI+ +   +  P   Q+LI+AGK L D   L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +Y I +++ + +++     
Sbjct: 61  EYKIDEKNFVVVMVTKPKA 79

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (269), Expect = 7e-31
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 16/94 (17%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 196
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 197 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGGG 229
            AG++L + R  L DY I+    +  + +L    
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQKS 100

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 3e-30
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LI 120
           GM + V  + G+ + + V  + T+ ++K  IQ    +  +++                L 
Sbjct: 7   GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66

Query: 121 FAGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 152
            AG++L + R  L DY I+    +  + +L   
Sbjct: 67  SAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 9e-30
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 16/92 (17%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIF 45
          M + V  + G+ + + V  + T+ ++K  IQ    +  +++                L  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 AGKQLEDGR-TLADYNIQKESTLHLVLRLRGG 76
          AG++L + R  L DY I+    +  + +L   
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-30
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 1  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 59 YNIQKESTLHLVLRL 73
          Y ++   T+ L++R 
Sbjct: 61 YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-30
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 77  MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 135 YNIQKESTLHLVLRL 149
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-30
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)

Query: 153 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G+ T T++ +     ++ ++ KIQ+   + P  QRL + GKQ+EDG TL D
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 211 YNIQKESTLHLVLRL 225
           Y ++   T+ L++R 
Sbjct: 61  YEVRLNDTIQLLVRQ 75

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 4e-30
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 52
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53  GRTLADYNIQKESTLHLVLRLRGGM 77
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (265), Expect = 4e-30
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 128
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 129 GRTLADYNIQKESTLHLVLRLRGGM 153
             TL    +    T  + L  R  +
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (264), Expect = 5e-30
 Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLED 204
           + + +  ++GKT       +D+  ++   +        ++++   P+  RLI+ G+ L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 205 GRTLADYNIQKESTLHLVLRLRGG 228
             TL    +    T  + L  R  
Sbjct: 77  NVTLGALKLPFGKTTVMHLVARET 100

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (263), Expect = 5e-30
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)

Query: 75  GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 129
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 130 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTG 162
            +L  Y ++    + L+ +   G++   +T +G
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 4e-29
 Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 1  MQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRT 55
          M I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 56 LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86
          L  Y ++    + L+ +   G++   +T +G
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.5 bits (245), Expect = 3e-27
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 151 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDG 205
            GM I V    + LT  T +L+V     + N +   + + G+P ++ ++++  +   +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 206 RTLADYNIQKESTLHLVLRLRGGG 229
            +L  Y ++    + L+ +   G 
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGL 89

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-29
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 132
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 133 ADYNIQKESTLHLVL 147
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-29
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTL 208
            + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   +
Sbjct: 2   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 61

Query: 209 ADYNIQKESTLHLVL 223
            DY I +++ + +++
Sbjct: 62  RDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 4e-29
 Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
          + I +KTL  +T  + +E  +T+  +K KI+ ++G    P   Q+LI+AGK L D   + 
Sbjct: 3  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62

Query: 58 DYNIQKESTLHLVL 71
          DY I +++ + +++
Sbjct: 63 DYRIDEKNFVVVMV 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 61 IQKESTLHLVLRL 73
          I K+  + +++  
Sbjct: 64 IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 137 IQKESTLHLVLRL 149
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 21/73 (28%), Positives = 40/73 (54%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
            Q+ ++  TGK + L V S+DT+ ++K ++   EG+ P  QR  F+G+ L D     +  
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 213 IQKESTLHLVLRL 225
           I K+  + +++  
Sbjct: 64  IPKDYVVQVIVSQ 76

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 1  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 59 YNIQKESTLHLVLR 72
          Y++     + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 77  MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 135 YNIQKESTLHLVLR 148
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (256), Expect = 3e-29
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 153 MQIFVKTLTG-KTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           M I V+T+ G KT T+E V    TI+ ++ ++     + P+ QRL + GKQLE+G TL D
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60

Query: 211 YNIQKESTLHLVLR 224
           Y++     + L++R
Sbjct: 61  YDVGLNDIIQLLVR 74

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (250), Expect = 2e-28
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2  LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 61 IQKESTLHLVLR 72
          IQ   ++HLV  
Sbjct: 61 IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (250), Expect = 2e-28
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 137 IQKESTLHLVLR 148
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (250), Expect = 2e-28
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + I +K+       + V    T+   K  I    GIP   QRLI++GK L+D +T+  Y+
Sbjct: 2   LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 213 IQKESTLHLVLR 224
           IQ   ++HLV  
Sbjct: 61  IQDGHSVHLVKS 72

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 4e-28
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 76  GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 131
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 132 LADYNIQKES--TLHLVLRLRGG 152
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 4e-28
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 152 GMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRT 207
           G+ + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + 
Sbjct: 7   GVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC 66

Query: 208 LADYNIQKES--TLHLVLRLRGG 228
           L D   ++E    LHLV  ++ G
Sbjct: 67  LRDLLPKQEKRHVLHLVCNVKSG 89

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (247), Expect = 1e-27
 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 1  MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTL 56
          + + VK+   +   + L  +   ++ ++KA +         P+ QRLI++GK L D + L
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 57 ADYNIQKES--TLHLVLRLRGG 76
           D   ++E    LHLV  ++ G
Sbjct: 68 RDLLPKQEKRHVLHLVCNVKSG 89

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 9e-28
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 2  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 59
           + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2  DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 60 NIQKESTLHLVLR 72
           +   ST+ LV+ 
Sbjct: 62 GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 9e-28
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 78  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 135
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 136 NIQKESTLHLVLR 148
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (246), Expect = 9e-28
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADY 211
            + VK L G    + + SS ++  +KA+I  K G+   QQRL    +G  L+D   LA  
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 212 NIQKESTLHLVLR 224
            +   ST+ LV+ 
Sbjct: 62  GLGPGSTVLLVVD 74

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.5 bits (240), Expect = 1e-26
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 75  GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 133
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 134 DYNIQKESTLHLVLRLRGG 152
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.5 bits (240), Expect = 1e-26
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 209
            G+ + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+
Sbjct: 6   SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLS 62

Query: 210 DYNIQKESTLHLVLRLRGG 228
             NI     +H      G 
Sbjct: 63  SLNITNNCVIHCHRSPPGA 81

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.6 bits (235), Expect = 6e-26
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADY 59
          + + +K L            DT+  +K+K    +     Q +LI+ G+ L +  RTL+  
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSL 64

Query: 60 NIQKESTLHLVLRLRGG 76
          NI     +H      G 
Sbjct: 65 NITNNCVIHCHRSPPGA 81

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.9 bits (236), Expect = 5e-26
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 64  ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 118
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 119 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 148
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.9 bits (236), Expect = 5e-26
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 140 ESTLHLVLRLRGGMQIFVKT--LTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQR 194
            S  HL ++L            L    +        +I  +K  I  K  E +P P+   
Sbjct: 3   LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELID 62

Query: 195 LIFAGKQLEDGRTLADYNIQKESTLHLVLR 224
           LI+ G++L+D +TL  Y IQ  ST+H++ +
Sbjct: 63  LIYCGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.6 bits (204), Expect = 3e-21
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQK 63
           L    +        +I  +K  I  K  E +P P+   LI+ G++L+D +TL  Y IQ 
Sbjct: 24 QLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 83

Query: 64 ESTLHLVLR 72
           ST+H++ +
Sbjct: 84 GSTVHVLRK 92

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 4e-25
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 61  IQKESTLHLVLR 72
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 4e-25
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 137 IQKESTLHLVLR 148
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 4e-25
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + ++   K  I  +     DQ  LIFAGK L+D  TL  + 
Sbjct: 33  IKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 213 IQKESTLHLVLR 224
           I    T+HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.2 bits (226), Expect = 9e-25
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11 IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 61 IQKESTLHLVLR 72
          I   ST+H+V+R
Sbjct: 70 ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.2 bits (226), Expect = 9e-25
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 137 IQKESTLHLVLR 148
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.2 bits (226), Expect = 9e-25
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT         +  +  +   K +I        D+  LIF GK L D   L+   
Sbjct: 11  IRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 213 IQKESTLHLVLR 224
           I   ST+H+V+R
Sbjct: 70  ILDGSTVHVVVR 81

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 2e-24
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 132
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 133 ADYNIQKESTLHLVLRLRGG 152
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 2e-24
 Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTL 208
           G+ I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L
Sbjct: 7   GLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL 66

Query: 209 ADYNIQKESTLHLVLRLRGG 228
               ++  + + ++     G
Sbjct: 67  GALKLKPNTKIMMMGTRESG 86

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.7 bits (222), Expect = 5e-24
 Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLA 57
          + I VK    +     +   DT+ ++K  ++   G+ P++Q+L+     GK  E+   L 
Sbjct: 8  LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 67

Query: 58 DYNIQKESTLHLVLRLRGG 76
             ++  + + ++     G
Sbjct: 68 ALKLKPNTKIMMMGTRESG 86

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.2 bits (226), Expect = 2e-24
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 1   MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 59  YNIQKESTLHLVLRLRGG 76
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.2 bits (226), Expect = 2e-24
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 77  MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 135 YNIQKESTLHLVLRLRGG 152
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.2 bits (226), Expect = 2e-24
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 153 MQIFVKTLT-GKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++       G+ + + V+S S+ + ++K KI  +  IP ++Q+L      L+D  +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 211 YNIQKESTLHLVLRLRGG 228
           YN+     L L LR R G
Sbjct: 90  YNVGAGEILTLSLRERSG 107

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 6e-24
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8  IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 61 IQKESTLHLVLRLR 74
          ++   T+HLV++ +
Sbjct: 67 VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 6e-24
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 137 IQKESTLHLVLRLR 150
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 6e-24
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ VKT   K     V  + TI  +K +I  +    PDQ  LIFAGK L+D  +LA   
Sbjct: 8   IKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 213 IQKESTLHLVLRLR 226
           ++   T+HLV++ +
Sbjct: 67  VRDGLTVHLVIKRQ 80

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.8 bits (217), Expect = 2e-23
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2  IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 61 IQKESTLHL 69
          +  ++ L L
Sbjct: 62 VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.8 bits (217), Expect = 2e-23
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 137 IQKESTLHL 145
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.8 bits (217), Expect = 2e-23
 Identities = 16/69 (23%), Positives = 35/69 (50%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V    GK + ++  + D++ + K  +  + G  P++  L   G  L+D  +L DY 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 213 IQKESTLHL 221
           +  ++ L L
Sbjct: 62  VHDQTNLEL 70

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.9 bits (215), Expect = 8e-23
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 1  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 52
          ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8  LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 53 GRTLADYNI------QKESTLHLVLR 72
           +T+ DY           +T+H++++
Sbjct: 68 SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.9 bits (215), Expect = 8e-23
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 77  MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 128
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 129 GRTLADYNI------QKESTLHLVLR 148
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.9 bits (215), Expect = 8e-23
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 14/86 (16%)

Query: 153 MQIFVKTLTGKTIT-LEVESSDTIDNVKAKIQD-----KEGIP--PDQQRLIFAGKQLED 204
           ++I  +   G  I       + T+  +K  +       KE  P    + +LI AGK LE+
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 205 GRTLADYNI------QKESTLHLVLR 224
            +T+ DY           +T+H++++
Sbjct: 68  SKTVKDYRSPVSNLAGAVTTMHVIIQ 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 2e-22
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 76  GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 127
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 128 DGRTLADYNIQKESTLHLVLRLRGGMQ 154
           +   L  Y +     +H++     G  
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.3 bits (211), Expect = 3e-22
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 8/85 (9%)

Query: 152 GMQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE 203
           G+ +F+ + L           S TI   K K++   G P     L   G          +
Sbjct: 7   GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ 66

Query: 204 DGRTLADYNIQKESTLHLVLRLRGG 228
           +   L  Y +     +H++     G
Sbjct: 67  EDALLGSYPVDDGCRIHVIDHSGSG 91

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.2 bits (208), Expect = 7e-22
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 1  MQIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LED 52
          + +F+ + L           S TI   K K++   G P     L   G          ++
Sbjct: 8  VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 53 GRTLADYNIQKESTLHLVLRLRGGMQ 78
             L  Y +     +H++     G  
Sbjct: 68 DALLGSYPVDDGCRIHVIDHSGSGPS 93

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 1e-21
 Identities = 14/79 (17%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 153 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 210
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 211 YNIQKESTLHLVLRLRGGG 229
             +       ++   +  G
Sbjct: 78  QGVAHNVKAMVLELKQSSG 96

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 1  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58
          +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 59 YNIQKESTLHLVLRLRGG 76
            +       ++   +  
Sbjct: 78 QGVAHNVKAMVLELKQSS 95

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 77  MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 134
           +++F+  +    +   LE     T   +++KI +  G+  +  +++   KQL+ G+TL +
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 135 YNIQKESTLHLVLRLRGG 152
             +       ++   +  
Sbjct: 78  QGVAHNVKAMVLELKQSS 95

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 6  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 57
               + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18 NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 58 DYNIQKESTLHLV 70
           Y+++    L + 
Sbjct: 78 FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 82  KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 133
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 134 DYNIQKESTLHLV 146
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--------DGRTLA 209
                + +  ++  S T+  VK  +     +P  +  L +   ++         D + L 
Sbjct: 18  NQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQ 77

Query: 210 DYNIQKESTLHLV 222
            Y+++    L + 
Sbjct: 78  FYSVENGDCLLVR 90

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-19
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 75  GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 134 DYNIQKESTLHLVLRLRGG 152
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 2e-19
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 151 GGMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 209
           G   + +K +       ++V    T   +K KI    G+PP  Q++++    + + +TL 
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLR 72

Query: 210 DYNIQKESTLHLVLRLRGG 228
           +  +   + + +V     G
Sbjct: 73  EIKVTSGAKIMVVGSTISG 91

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.9 bits (189), Expect = 4e-19
 Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + +         ++V    T   +K KI    G+PP  Q++++    + + +TL +  
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLREIK 75

Query: 61 IQKESTLHLVLRLRGG 76
          +   + + +V     G
Sbjct: 76 VTSGAKIMVVGSTISG 91

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 77.2 bits (190), Expect = 2e-19
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5  INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 61 IQKESTLHLVLRLRGG 76
          ++    +       GG
Sbjct: 64 MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 77.2 bits (190), Expect = 2e-19
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 137 IQKESTLHLVLRLRGG 152
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 77.2 bits (190), Expect = 2e-19
 Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           + + V       I  +++ +  +  +      ++G   D  R ++ G +++  +T  D +
Sbjct: 5   INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 213 IQKESTLHLVLRLRGG 228
           ++    +       GG
Sbjct: 64  MEDNDIIEAHREQIGG 79

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (190), Expect = 3e-19
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 76  GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 135
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 136 NIQKESTLHLV 146
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.3 bits (190), Expect = 3e-19
 Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
           G  + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     + 
Sbjct: 7   GYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNI 65

Query: 212 NIQKESTLHLV 222
            ++   T+ ++
Sbjct: 66  KMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.8 bits (186), Expect = 1e-18
 Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
            + VK    K   +E+ + +     KA++    G+ P +Q+++  G  L+D     +  
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIK 66

Query: 61 IQKESTLHLV 70
          ++   T+ ++
Sbjct: 67 MKNGMTVLMM 76

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 4e-18
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 76  GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 129
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 130 RTLADYNIQKESTLHLVLR 148
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 4e-18
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 152 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDG 205
           G+ + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E  
Sbjct: 1   GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEME 59

Query: 206 RTLADYNIQKESTLHLVLR 224
             L+   IQ    + L+ +
Sbjct: 60  TPLSALGIQDGCRVMLIGK 78

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (176), Expect = 2e-17
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 1  MQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGR 54
          + + V   + +   L V      S   + ++   +++  G+P   Q+LIF GK L E   
Sbjct: 2  LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMET 60

Query: 55 TLADYNIQKESTLHLVLR 72
           L+   IQ    + L+ +
Sbjct: 61 PLSALGIQDGCRVMLIGK 78

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 7e-18
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 61 IQKESTLHLVLRLRG 75
          +++E  + +     G
Sbjct: 63 MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 7e-18
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 137 IQKESTLHLVLRLRG 151
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 7e-18
 Identities = 13/75 (17%), Positives = 35/75 (46%)

Query: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212
           +++ V       I  +V+ +  +  +K     ++G+P +  R +F G+++ D  T  +  
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 213 IQKESTLHLVLRLRG 227
           +++E  + +     G
Sbjct: 63  MEEEDVIEVYQEQTG 77

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 7  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 59
            T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12 NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 60 NIQKESTLHLVLRLRG 75
           ++    +H V    G
Sbjct: 72 GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 83  TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 135
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 136 NIQKESTLHLVLRLRG 151
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (179), Expect = 1e-17
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 159 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDGRTLADY 211
             T   +  +  +  +++++K K++   G   D  R+              +  ++L D 
Sbjct: 12  NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDL 71

Query: 212 NIQKESTLHLVLRLRG 227
            ++    +H V    G
Sbjct: 72  GVRDGYRIHAVDVTGG 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.88
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.88
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.87
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.86
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.86
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.85
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.85
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.84
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.84
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.83
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.83
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.83
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.82
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.82
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.82
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.81
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.8
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.8
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.79
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.79
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.78
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.78
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.77
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.76
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.76
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.75
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.75
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.75
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.74
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.74
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.73
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.73
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.73
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.73
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.71
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.7
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.7
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.7
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.7
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.7
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.68
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.68
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.67
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.66
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.66
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.66
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.65
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.64
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.63
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.63
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.62
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.61
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.61
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.59
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.59
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.58
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.56
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.54
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.5
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.45
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.44
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.44
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.4
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.39
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.37
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.37
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.36
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.24
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.72
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.67
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	98.32
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	98.22
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.44
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.4
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.09
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.99
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	96.86
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	96.76
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	96.71
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	96.69
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	94.97
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	94.11
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	93.77
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	93.33
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	91.94
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	91.08
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	90.68
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	90.61
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	90.49
d1wgya_	104	Rap guanine nucleotide exchange factor 5, RapGEF5	89.8
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	88.3
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	87.58
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	86.63
d1wgya_	104	Rap guanine nucleotide exchange factor 5, RapGEF5	85.94
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	85.87
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	85.44
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	83.68
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	83.37
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	82.85
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	82.76
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	82.29
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	82.15
d1gg3a3	81	Erythroid membrane protein 4.1R {Human (Homo sapie	81.25

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.8e-23  Score=133.93  Aligned_cols=75  Identities=33%  Similarity=0.593  Sum_probs=73.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.+|++++++|++++||++||++|++.+|||+++|+|+|+|+.|+|+.+|++|+|.+++++|+..++.+
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999988754

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=1e-22  Score=130.47  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=71.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+||+++|++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||.+++++|+++++
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998863

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=131.17  Aligned_cols=75  Identities=96%  Similarity=1.311  Sum_probs=72.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+||+++|++++++|++++||.+||++|+...|+|++.|+|+|+|+.|+|+.+|++|||.+++++++.++..+
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrg   75 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG   75 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3e-22  Score=129.35  Aligned_cols=73  Identities=34%  Similarity=0.560  Sum_probs=71.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.+|++++++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|||.+++++|+.+|+
T Consensus         4 ~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999998763

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.9e-22  Score=131.56  Aligned_cols=75  Identities=33%  Similarity=0.510  Sum_probs=72.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++++|++++++|++++||.+||++|+..+|||+++|+|+|+|+.|+|+.+|++|+|.+++++||..+...
T Consensus         8 mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred             EEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987643

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.5e-22  Score=126.93  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=70.1

Q ss_pred             CEEEEEccCC-cEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g-~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++++| +++++ .|++++||++||.+|+...|||+++|+|+|+|+.|+|+.+|++|||.+++++|++++|
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 58887 5999999999999999999999999999999999999999999999999999999886

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-21  Score=126.26  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=70.0

Q ss_pred             CEEEEEccCCc-EEEEE-ecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~-~~~~~-v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++++|+ +++++ +++++||++||++|+...|||+++|+|+|+|+.|+|+.+|++|||.+++++|+.++.
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            89999999996 88885 999999999999999999999999999999999999999999999999999999874

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-21  Score=126.23  Aligned_cols=76  Identities=96%  Similarity=1.322  Sum_probs=74.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      |+++|++.+|+++++++++++||++||++|+.+.|+|++.|+|+|+|+.|+|+.+|++|+|++||+|+|++|++||
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999988

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2e-21  Score=125.70  Aligned_cols=76  Identities=34%  Similarity=0.614  Sum_probs=74.2

Q ss_pred             ceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933          152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~  227 (230)
                      +|.++|+..+|+++++++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++||+|+++.|++|
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999999986

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5e-22  Score=127.06  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=68.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+||+++|++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+| .++++||+.+.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            8999999999999999999999999999999999999999999999999999999999999 57899887653

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=4.4e-21  Score=122.79  Aligned_cols=73  Identities=62%  Similarity=0.943  Sum_probs=70.8

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      |.|+|++.+|++++++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999864

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.2e-21  Score=125.53  Aligned_cols=74  Identities=28%  Similarity=0.525  Sum_probs=71.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+||+.+|++++++|++++||++||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999987643

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.4e-21  Score=122.47  Aligned_cols=75  Identities=33%  Similarity=0.535  Sum_probs=72.3

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ..|+|+|++.+|++++++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|+
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999998764

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=6.4e-21  Score=121.78  Aligned_cols=70  Identities=23%  Similarity=0.437  Sum_probs=68.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|+|+...|+++.++|+|++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++++|.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999999999999999999999999999999999999986

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=124.67  Aligned_cols=79  Identities=34%  Similarity=0.540  Sum_probs=75.1

Q ss_pred             cCCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      ...|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.+..++
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~g   83 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCC
Confidence            3579999999999999999999999999999999999999999999999999999999999999999999999887654

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-20  Score=120.00  Aligned_cols=72  Identities=33%  Similarity=0.444  Sum_probs=69.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe--cCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~--~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      .+|+||+++|++++++|++++||.+||.+|+..+|||+++|+|+|  .|+.|.|+.+|++|||.++++++|+++
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEE
Confidence            379999999999999999999999999999999999999999999  699999999999999999999999875

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.1e-20  Score=124.32  Aligned_cols=74  Identities=31%  Similarity=0.606  Sum_probs=70.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+||+++|++++++|++++||.+||++|++..|   +|+++|+|+|+|+.|+|+.+|++|||.++++++++++.+
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~   77 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCC
Confidence            99999999999999999999999999999999876   899999999999999999999999999999999987643

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.7e-20  Score=120.21  Aligned_cols=71  Identities=32%  Similarity=0.587  Sum_probs=68.6

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhC---CCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      |+|+||+++|++++++|+|++||++||++|+...|   +|+++|+|+|+|+.|+|+.+|++|||.+++++++++
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            78999999999999999999999999999999987   999999999999999999999999999999998875

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.4e-20  Score=117.15  Aligned_cols=71  Identities=34%  Similarity=0.558  Sum_probs=67.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|++. +++++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||.+++++||+.+
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            68999975 667999999999999999999999999999999999999999999999999999999999754

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.9e-20  Score=120.29  Aligned_cols=75  Identities=28%  Similarity=0.514  Sum_probs=72.2

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      .++|+|+..+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++.+
T Consensus         3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            578999999999999999999999999999999999999999999999999999999999999999999998754

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.8e-20  Score=117.37  Aligned_cols=73  Identities=37%  Similarity=0.647  Sum_probs=69.3

Q ss_pred             eeeEEEccCCc-EEeec-cCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTGK-TITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~-~~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      |+|+|++.+|+ ++.++ +++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||.++++|++++|+
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            78999999995 78885 999999999999999999999999999999999999999999999999999999875

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.8e-20  Score=119.93  Aligned_cols=74  Identities=34%  Similarity=0.476  Sum_probs=69.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG   75 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~   75 (230)
                      |+|+|++.++ .++++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+++++++.++...
T Consensus         8 i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           8 IKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            7899999855 6899999999999999999999999999999999999999999999999999999999987643

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-19  Score=116.40  Aligned_cols=73  Identities=37%  Similarity=0.622  Sum_probs=69.1

Q ss_pred             eeeEEEccCC-cEEee-ccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g-~~~~~-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      |+|+|+..+| +++.+ +|++++||++||.+|+++.|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++++|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            7899999998 56777 5999999999999999999999999999999999999999999999999999999875

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.6e-19  Score=115.18  Aligned_cols=71  Identities=23%  Similarity=0.431  Sum_probs=68.6

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      |+|+|+...|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999998863

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.1e-20  Score=118.59  Aligned_cols=72  Identities=35%  Similarity=0.613  Sum_probs=68.3

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      |+|+|++.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+++|++|+| ++++|+++.+.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            6899999999999999999999999999999999999999999999999999999999999 58999887654

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.9e-19  Score=114.84  Aligned_cols=73  Identities=33%  Similarity=0.428  Sum_probs=69.4

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe--cCcccCCCcchhhcccccCCceEEEEEe
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL  149 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~~l~~~~i~~~~~i~l~~~~  149 (230)
                      ++|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|  .|+.|.|+.+|++|||.+|++|+++++.
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            368999999999999999999999999999999999999999999  6999999999999999999999998764

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.3e-19  Score=121.87  Aligned_cols=71  Identities=23%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      |+|+|+...|+.+.++|+|++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|..
T Consensus        29 i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999864

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.6e-19  Score=113.95  Aligned_cols=72  Identities=32%  Similarity=0.581  Sum_probs=68.9

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC---CCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      .|+|+|++.+|+.+.++|++++||++||++|++..|   +|+++|+|+|+|+.|+|+.+|++|||+++++|.+++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            588999999999999999999999999999999987   899999999999999999999999999999998875

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=116.98  Aligned_cols=75  Identities=31%  Similarity=0.593  Sum_probs=70.6

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC---CCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeec
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  151 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~  151 (230)
                      |+|+|++.+|+++.++|++++||++||++|+++.+   +|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++.+.
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~   78 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCC
Confidence            78999999999999999999999999999999876   8999999999999999999999999999999999886543

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9.5e-19  Score=119.13  Aligned_cols=71  Identities=32%  Similarity=0.437  Sum_probs=67.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|+|++.++ .++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||.++++|||+++
T Consensus        33 i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             EEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            7899999865 5799999999999999999999999999999999999999999999999999999999874

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.6e-18  Score=110.58  Aligned_cols=71  Identities=34%  Similarity=0.558  Sum_probs=66.2

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      |+|+|++. +.++.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|||.+|++|+++.+
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            67888864 567999999999999999999999999999999999999999999999999999999999864

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=4.1e-19  Score=116.18  Aligned_cols=72  Identities=28%  Similarity=0.356  Sum_probs=67.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+|++.++ .++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+.+|++|||.+++++++.++.
T Consensus        11 i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1          11 IRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             EEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             EEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999755 56899999999999999999999999999999999999999999999999999999988653

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.4e-18  Score=112.93  Aligned_cols=68  Identities=31%  Similarity=0.646  Sum_probs=65.8

Q ss_pred             ecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933          160 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       160 ~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~  227 (230)
                      .+|+++++++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|++|++|+|++|.+|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999886

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-18  Score=113.04  Aligned_cols=67  Identities=30%  Similarity=0.623  Sum_probs=64.4

Q ss_pred             cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEec
Q 026933            8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         8 ~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      ++|++++++|++++||.+||++|+..+|+|+++|+|.|+|+.|+|+.+|++|||.+++++||.++..
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~R   85 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKER   85 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecC
Confidence            6799999999999999999999999999999999999999999999999999999999999998753

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.1e-18  Score=118.11  Aligned_cols=74  Identities=22%  Similarity=0.412  Sum_probs=68.3

Q ss_pred             CEEEE----EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc-CCccccccccccCCeEEEEEEec
Q 026933            1 MQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v----~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~-d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |.|+|    +.++|.+++++|++++||.+||.+|+.++|||+++|+|+|+|+.|. |+.+|++|||.++++|+|..+..
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~~   86 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN   86 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECCC
Confidence            78999    6778999999999999999999999999999999999999999995 56899999999999999986653

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.4e-19  Score=120.91  Aligned_cols=74  Identities=23%  Similarity=0.416  Sum_probs=70.0

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCcee---------------EEecCccccCC-ccccccccccC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNIQKE   64 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~---------------l~~~g~~l~d~-~~l~~~~i~~~   64 (230)
                      |+|+|++.+|+.++++|++++||.+||++|++.++||+++|+               |+|+|+.|.|+ .+|.+|||.++
T Consensus         8 M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g   87 (105)
T d1v2ya_           8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCC
Confidence            899999999999999999999999999999999999999998               99999999765 68999999999


Q ss_pred             CeEEEEEEec
Q 026933           65 STLHLVLRLR   74 (230)
Q Consensus        65 ~~i~l~~~~~   74 (230)
                      +++||+.++.
T Consensus        88 ~~l~lv~r~~   97 (105)
T d1v2ya_          88 DEVSFIKKLG   97 (105)
T ss_dssp             EEEEEEECSC
T ss_pred             CEEEEEEecC
Confidence            9999987753

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.2e-18  Score=111.09  Aligned_cols=76  Identities=33%  Similarity=0.463  Sum_probs=70.4

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      ++++|++.. .++.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|++|....+
T Consensus         8 i~I~Vkt~~-~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~~a   83 (84)
T d1yqba1           8 IKVTVKTPK-DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA   83 (84)
T ss_dssp             EEEEEECSS-CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred             EEEEEEcCC-CcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCCCC
Confidence            678888864 4689999999999999999999999999999999999999999999999999999999999987654

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=2.2e-18  Score=115.78  Aligned_cols=72  Identities=22%  Similarity=0.326  Sum_probs=68.9

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      ++++|+...|+++.++|++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|.++
T Consensus        29 i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEEC
Confidence            578899989999999999999999999999999999999999999999999999999999999999999753

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=9.3e-18  Score=112.05  Aligned_cols=74  Identities=26%  Similarity=0.447  Sum_probs=68.5

Q ss_pred             CEEEEEccCCcEE-EEEecCCCcHHHHHHHhhhh-----hCCC--CCceeEEecCccccCCccccccccccCC------e
Q 026933            1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES------T   66 (230)
Q Consensus         1 m~v~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~-----~gip--~~~q~l~~~g~~l~d~~~l~~~~i~~~~------~   66 (230)
                      |+|+|++++|+.+ ++.+++++||.+||++|++.     .|+|  +++|||+|+|+.|+|+.||++|+|..++      +
T Consensus         8 i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~~~t   87 (101)
T d1se9a_           8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT   87 (101)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred             EEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCCceE
Confidence            6899999999976 79999999999999999875     7898  7899999999999999999999999997      8


Q ss_pred             EEEEEEec
Q 026933           67 LHLVLRLR   74 (230)
Q Consensus        67 i~l~~~~~   74 (230)
                      +||+++++
T Consensus        88 mHlVvrpp   95 (101)
T d1se9a_          88 MHVIIQAP   95 (101)
T ss_dssp             EEEEECCC
T ss_pred             EEEEeCCC
Confidence            99999874

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=4.7e-18  Score=116.48  Aligned_cols=68  Identities=34%  Similarity=0.516  Sum_probs=65.9

Q ss_pred             cCceEEEEeec-cccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          161 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       161 ~~~~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +|+++++++.+ ++||.+||++|++++|+|++.|+|+|.|+.|+|+.+|++|+|++|++|+|.+|.+||
T Consensus        39 ~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG  107 (111)
T d1we6a_          39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             CCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCC
Confidence            58999999987 899999999999999999999999999999999999999999999999999999987

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-17  Score=112.71  Aligned_cols=73  Identities=32%  Similarity=0.400  Sum_probs=68.1

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      ..|+|+|++.++ .+.++|++++||.+||++|++++|+|++.|+|+|+|+.|+|+.+|++|||.+|++|+|++|
T Consensus        31 ~~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          31 KIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CeEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            358899998766 5799999999999999999999999999999999999999999999999999999999874

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.5e-17  Score=110.74  Aligned_cols=71  Identities=24%  Similarity=0.319  Sum_probs=65.5

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc-CCccccccccccCCeEEEEEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLR   74 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~-d~~~l~~~~i~~~~~i~l~~~~~   74 (230)
                      |+|+||+++|+.+.++|++++||.+||++|+   .+++++|+|+|+|+.|. |.++|++|+|.+++++|++++.+
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~   79 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCC
Confidence            8999999999999999999999999999986   56889999999999996 56899999999999999987654

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.1e-17  Score=113.02  Aligned_cols=73  Identities=23%  Similarity=0.417  Sum_probs=67.2

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHh--------hhhhCCCCCceeEEecCccccCCccccccccccCCe--EEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST--LHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i--------~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~--i~l~   70 (230)
                      |+|+|++++|+++.+.|+|++||.+||++|        ++..|+|+++|||+|.|+.|+|+.+|++|+|..+++  +||+
T Consensus        17 i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lhlv   96 (116)
T d1wgha_          17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV   96 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEEEE
Confidence            679999999999999999999999999999        677899999999999999999999999999999987  5555


Q ss_pred             EEe
Q 026933           71 LRL   73 (230)
Q Consensus        71 ~~~   73 (230)
                      ++.
T Consensus        97 ~r~   99 (116)
T d1wgha_          97 ARE   99 (116)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            553

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=9.5e-18  Score=112.45  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=67.1

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|+||..+++.+.++|++++||.+||++|++.+|||+++|+|+|+|+.|+|+ +|++|||.++++++|+..
T Consensus         8 ~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             eEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEee
Confidence            58999999998889999999999999999999999999999999999999986 799999999999999754

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=8e-18  Score=115.30  Aligned_cols=75  Identities=31%  Similarity=0.456  Sum_probs=67.7

Q ss_pred             EEEEEcc-CCcEEEEEecC-CCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEecCC
Q 026933            2 QIFVKTL-TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG   76 (230)
Q Consensus         2 ~v~v~~~-~g~~~~~~v~~-~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~~~~   76 (230)
                      +|+|+.. +|++++++|.+ ++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+++++||.++.+++
T Consensus        31 ~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG  107 (111)
T d1we6a_          31 RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             EECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             EEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeCCCC
Confidence            3444443 59999999987 899999999999999999999999999999999999999999999999999987654

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.8e-18  Score=111.01  Aligned_cols=73  Identities=27%  Similarity=0.336  Sum_probs=67.7

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEE
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  148 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~  148 (230)
                      ..|+|+|++.++ .+.+++++++||.+||++|++..++|++.|+|+|+|+.|.|+.+|++|||.+|++|++++|
T Consensus         9 ~~i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           9 RIIRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             CEEEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBC
T ss_pred             CeEEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEe
Confidence            458999998665 5789999999999999999999999999999999999999999999999999999998765

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.4e-17  Score=111.41  Aligned_cols=78  Identities=23%  Similarity=0.446  Sum_probs=69.2

Q ss_pred             cceeEEE----eeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeec-CCCCcccccCCCCCCEEEEEEEe
Q 026933          151 GGMQIFV----KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       151 ~~~~i~v----~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L-~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      .+|.++|    +...+.+++++|++++||++||++|+.+.|+|++.|+|+|+|+.| +|+++|++|||++|++|+|+.|.
T Consensus         6 ~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~   85 (102)
T d1v5oa_           6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECC
Confidence            3566777    455688999999999999999999999999999999999999999 57789999999999999998876


Q ss_pred             cCC
Q 026933          226 RGG  228 (230)
Q Consensus       226 ~~g  228 (230)
                      .++
T Consensus        86 ~~~   88 (102)
T d1v5oa_          86 NVG   88 (102)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=7.8e-17  Score=107.51  Aligned_cols=78  Identities=24%  Similarity=0.411  Sum_probs=70.1

Q ss_pred             cCCeeeEEEccCCcEE-eeccCccCcHHHHHHHHhhH-----hCCC--CCCeEEEecCcccCCCcchhhcccccCC----
Q 026933           74 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES----  141 (230)
Q Consensus        74 ~~~~~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~-----~~i~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~----  141 (230)
                      ...|.|.++..+|+.+ ++.+++++||.+||++|++.     .|+|  +++|||+|+|+.|+|+.+|++|++.+|+    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            4578999999999876 79999999999999999886     5687  7799999999999999999999999997    


Q ss_pred             --ceEEEEEeec
Q 026933          142 --TLHLVLRLRG  151 (230)
Q Consensus       142 --~i~l~~~~~~  151 (230)
                        ++||++|++.
T Consensus        85 ~~tmHlVvrpp~   96 (101)
T d1se9a_          85 VTTMHVIIQAPV   96 (101)
T ss_dssp             CEEEEEEECCCS
T ss_pred             ceEEEEEeCCCC
Confidence              8999987753

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=3.3e-17  Score=109.56  Aligned_cols=71  Identities=18%  Similarity=0.365  Sum_probs=65.3

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|.|+ .++++++++|++++||.+||++|++.+|+|+++|+|+|+|+ |.|+.+|++|+|.++++|+|+...
T Consensus        18 i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSS
T ss_pred             EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecC
Confidence            567786 68999999999999999999999999999999999999986 899999999999999999997543

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.6e-17  Score=110.10  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=66.4

Q ss_pred             CEEEE--EccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFV--KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v--~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |+|++  +...|++++++|.+++||.+||.+|++..|+|+++|+|+|+|+.|+|+.+|++|||.++++++++..
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEc
Confidence            46666  4467999999999999999999999999999999999999999999999999999999999988753

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-16  Score=107.53  Aligned_cols=64  Identities=28%  Similarity=0.440  Sum_probs=59.6

Q ss_pred             EEEEEccCCc-EEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCccccCCccccccccccCC
Q 026933            2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES   65 (230)
Q Consensus         2 ~v~v~~~~g~-~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~d~~~l~~~~i~~~~   65 (230)
                      +|||+...|+ +++++|++++||.+||.+|+...|||+++|+|+|+|+.|+|+++|++|||.+++
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTT
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCccc
Confidence            5788888765 788999999999999999999999999999999999999999999999997765

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.6e-17  Score=113.04  Aligned_cols=76  Identities=24%  Similarity=0.436  Sum_probs=70.8

Q ss_pred             CCeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeE---------------EEecCcccCCC-cchhhcccc
Q 026933           75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR---------------LIFAGKQLEDG-RTLADYNIQ  138 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~---------------L~~~g~~L~d~-~~l~~~~i~  138 (230)
                      ..|+|+|+..+|+.++++|++++||++||++|+++.++|+++|+               |+|+|+.|.|+ .+|.+|||.
T Consensus         6 s~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~   85 (105)
T d1v2ya_           6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCC
Confidence            46999999999999999999999999999999999999999987               99999999765 589999999


Q ss_pred             cCCceEEEEEee
Q 026933          139 KESTLHLVLRLR  150 (230)
Q Consensus       139 ~~~~i~l~~~~~  150 (230)
                      +|++|+++.++.
T Consensus        86 ~g~~l~lv~r~~   97 (105)
T d1v2ya_          86 NRDEVSFIKKLG   97 (105)
T ss_dssp             SSEEEEEEECSC
T ss_pred             CCCEEEEEEecC
Confidence            999999998764

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=6.7e-17  Score=107.14  Aligned_cols=72  Identities=21%  Similarity=0.412  Sum_probs=66.3

Q ss_pred             CEEEEEccCCcEEEE-EecCCCcHHHHHHHhhhhhCCCCCceeEE---ecCccccCCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~-~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |+|+||. .|+.+.+ +|++++||.+||++|+..+|+|+++|+|+   |.|+.|+|+.+|++|+|.++++++|+...
T Consensus         8 ~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred             EEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeC
Confidence            7899985 6777777 79999999999999999999999999999   68999999999999999999999998654

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-16  Score=103.38  Aligned_cols=72  Identities=24%  Similarity=0.409  Sum_probs=64.2

Q ss_pred             CEEEEEccCCcEEEEEe-----cCCCcHHHHHHHhhhhhCCCCCceeEEecCcccc-CCccccccccccCCeEEEEEEe
Q 026933            1 MQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v-----~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~-d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      |.|+|+. ++..++++|     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.+|++|||.++++++|+.+.
T Consensus         2 i~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           2 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             EEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            6788844 688999998     4688999999999999999999999999999995 5689999999999999998653

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-16  Score=107.13  Aligned_cols=72  Identities=18%  Similarity=0.265  Sum_probs=66.1

Q ss_pred             eeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCCC
Q 026933          158 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGG  229 (230)
Q Consensus       158 ~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g~  229 (230)
                      +...++++.+++++++||++||++|+++.|+|++.|+|+|.|+.|+|+++|++|+|++|++|+++....+++
T Consensus        25 ~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~~~~~   96 (100)
T d1wjua_          25 RLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSSG   96 (100)
T ss_dssp             TTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCCC
T ss_pred             ccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcCCCCC
Confidence            345689999999999999999999999999999999999999999999999999999999998887665554

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1e-15  Score=105.34  Aligned_cols=75  Identities=19%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHh--------chhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKI--------QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i--------~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~  222 (230)
                      ..+.++++..+|+++.+++++++||.+||++|        ++..++|++.|+|+|.|+.|+|+.+|.+|+|.+|+++.+.
T Consensus        15 ~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~lh   94 (116)
T d1wgha_          15 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH   94 (116)
T ss_dssp             SSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEE
T ss_pred             CeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEEE
Confidence            34678888889999999999999999999999        5667899999999999999999999999999999985554


Q ss_pred             EEe
Q 026933          223 LRL  225 (230)
Q Consensus       223 ~~~  225 (230)
                      +..
T Consensus        95 lv~   97 (116)
T d1wgha_          95 LVA   97 (116)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.9e-16  Score=103.69  Aligned_cols=73  Identities=29%  Similarity=0.442  Sum_probs=65.0

Q ss_pred             CEEEEEccCCc--EEEEEecCCCcHHHHHHHhhhhhC--CCCCceeEEecCccccCCccccccccccCC--eEEEEEEe
Q 026933            1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLVLRL   73 (230)
Q Consensus         1 m~v~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~l~~~g~~l~d~~~l~~~~i~~~~--~i~l~~~~   73 (230)
                      |+|+|++++++  .+.+++++++||.+||++|++..+  +|+++|||+|+|+.|.|+.+|++|....++  ++||+.++
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~~   86 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNV   86 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEecC
Confidence            78999999775  588999999999999999999965  999999999999999999999999876554  88888655

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=9.9e-16  Score=101.84  Aligned_cols=75  Identities=25%  Similarity=0.369  Sum_probs=67.8

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecC-CCCcccccCCCCCCEEEEEEEecCC
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~-d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      .+|.++|++.+++.+.+++++++||.+||++|+.   .+++.|+|+|+|+.|. |.++|++|+|.+|++|+++++..++
T Consensus         6 s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~~---~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~~   81 (95)
T d1wiaa_           6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFP---GQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSS---STTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHhc---CCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCCC
Confidence            5688999999999999999999999999999974   5889999999999995 7789999999999999999876544

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.6e-16  Score=105.07  Aligned_cols=73  Identities=18%  Similarity=0.324  Sum_probs=66.3

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      .|.|.|+ .+++++.++|++++||++||++|++.+++|+++|+|+|+|+ |.|+.+|++|+|++|++|+|+.+..
T Consensus        17 ~i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~   89 (95)
T d1v86a_          17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTI   89 (95)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSC
T ss_pred             EEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCC
Confidence            4677776 68899999999999999999999999999999999999986 8999999999999999998875543

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=8.2e-16  Score=99.56  Aligned_cols=74  Identities=26%  Similarity=0.438  Sum_probs=64.5

Q ss_pred             ceeEEEeeecCceEEEEee-----ccccHHHHHHHhchhcCCCCCceEEEECCeec-CCCCcccccCCCCCCEEEEEEEe
Q 026933          152 GMQIFVKTLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       152 ~~~i~v~~~~~~~~~~~v~-----~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L-~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      |+.+.|+. .++.+++++.     +++||++||++|++.+|+|+++|+|+|+|+.| +|+.+|++|||++|++|+|+.|.
T Consensus         1 gi~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           1 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             CEEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            46677765 5677888884     68899999999999999999999999999999 57789999999999999998765


Q ss_pred             c
Q 026933          226 R  226 (230)
Q Consensus       226 ~  226 (230)
                      .
T Consensus        80 ~   80 (81)
T d1wxva1          80 N   80 (81)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.2e-15  Score=101.06  Aligned_cols=75  Identities=21%  Similarity=0.428  Sum_probs=67.2

Q ss_pred             CCeeeEEEccCCcEEee-ccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           75 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        75 ~~~~v~v~~~~g~~~~~-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      ..|.|+|+. .++.+.+ ++++++||.+||++|++++++|+++|+|+   |.|+.|+|+.+|.+|+|++|++|+++.+..
T Consensus         6 ~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~~   84 (90)
T d1v5ta_           6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE   84 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred             CcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeCC
Confidence            468899985 6666776 79999999999999999999999999999   589999999999999999999999986543

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=8.9e-16  Score=102.66  Aligned_cols=73  Identities=19%  Similarity=0.290  Sum_probs=66.7

Q ss_pred             cceeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEE
Q 026933          151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       151 ~~~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      .++.+.|+...++.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|++|++|+|+..
T Consensus         6 ~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             CceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEee
Confidence            3577888887887789999999999999999999999999999999999999986 799999999999998753

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.3e-15  Score=99.95  Aligned_cols=77  Identities=29%  Similarity=0.462  Sum_probs=66.1

Q ss_pred             CCeeeEEEccCCc--EEeeccCccCcHHHHHHHHhhHhC--CCCCCeEEEecCcccCCCcchhhcccccCC--ceEEEEE
Q 026933           75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLVLR  148 (230)
Q Consensus        75 ~~~~v~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~--~i~l~~~  148 (230)
                      ..|+++|+..+++  .+.+++++++||.+||++|++..+  +|+++|||+|+|+.|.|+.+|++|....++  +||++.+
T Consensus         6 ~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             CcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEec
Confidence            3588999988764  488999999999999999999975  999999999999999999999999765544  8888876


Q ss_pred             eec
Q 026933          149 LRG  151 (230)
Q Consensus       149 ~~~  151 (230)
                      ...
T Consensus        86 ~~~   88 (93)
T d1wgda_          86 VKS   88 (93)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.56  E-value=8.1e-15  Score=94.48  Aligned_cols=75  Identities=13%  Similarity=0.339  Sum_probs=69.2

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +.+.|+. +++.+.+.+..++++..|++.++++.|++++.++|+|+|+.|+++.|+++|++++|++|++++++.||
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            3455554 57788899999999999999999999999999999999999999999999999999999999999998

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.6e-15  Score=99.12  Aligned_cols=74  Identities=27%  Similarity=0.399  Sum_probs=64.1

Q ss_pred             EEEeeecC-ceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCC-------CCCEEEEEEEec
Q 026933          155 IFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLR  226 (230)
Q Consensus       155 i~v~~~~~-~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~-------~g~~i~l~~~~~  226 (230)
                      ++++...+ +++.+++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|||.       ..+++.+.++..
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~~   81 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAD   81 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEET
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEecC
Confidence            45555544 4788999999999999999999999999999999999999999999999994       455888888766


Q ss_pred             CC
Q 026933          227 GG  228 (230)
Q Consensus       227 ~g  228 (230)
                      |+
T Consensus        82 ~~   83 (103)
T d2c9wb1          82 DT   83 (103)
T ss_dssp             TE
T ss_pred             CC
Confidence            53

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=6.4e-15  Score=98.04  Aligned_cols=73  Identities=18%  Similarity=0.246  Sum_probs=65.8

Q ss_pred             CEEEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCc-------cccCCccccccccccCCeEEEEEE
Q 026933            1 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR   72 (230)
Q Consensus         1 m~v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~-------~l~d~~~l~~~~i~~~~~i~l~~~   72 (230)
                      |.|+|+.. ++.....++++++||.+||++|+..+|+|++.|+|.|.|+       .++|+.+|.+|++.++++||++.+
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~   87 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeC
Confidence            57899874 6667889999999999999999999999999999999886       578899999999999999999865


Q ss_pred             e
Q 026933           73 L   73 (230)
Q Consensus        73 ~   73 (230)
                      .
T Consensus        88 ~   88 (95)
T d1v6ea_          88 S   88 (95)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.50  E-value=2e-14  Score=92.64  Aligned_cols=76  Identities=13%  Similarity=0.329  Sum_probs=69.8

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEeecc
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~~~  152 (230)
                      .+.|.|+. ++..+.+.|..++++..|+..++++.++|++.++|+|+|+.|.++.|+++|++.+|++|++++++.||
T Consensus         4 ~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           4 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            45666764 67778899999999999999999999999999999999999999999999999999999999998775

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=6.5e-14  Score=93.09  Aligned_cols=76  Identities=18%  Similarity=0.262  Sum_probs=66.0

Q ss_pred             ceeEEEeee-cCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCe-------ecCCCCcccccCCCCCCEEEEEE
Q 026933          152 GMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       152 ~~~i~v~~~-~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~-------~L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      ++.++|++. +...++..++++.||.+||++|+..+|+|++.|+|+|.|+       .++|+++|++|+|.+|++|+|+-
T Consensus         7 ~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd   86 (95)
T d1v6ea_           7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             cEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEe
Confidence            466777764 4456889999999999999999999999999999998775       57899999999999999999987


Q ss_pred             EecC
Q 026933          224 RLRG  227 (230)
Q Consensus       224 ~~~~  227 (230)
                      +..+
T Consensus        87 ~~p~   90 (95)
T d1v6ea_          87 HSGS   90 (95)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            7544

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.1e-13  Score=90.77  Aligned_cols=84  Identities=27%  Similarity=0.390  Sum_probs=64.9

Q ss_pred             CCeEEEEEEecCC---eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhC--CC-CCCeEEEecCcccCCCcchhhccc
Q 026933           64 ESTLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IP-PDQQRLIFAGKQLEDGRTLADYNI  137 (230)
Q Consensus        64 ~~~i~l~~~~~~~---~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~-~~~q~L~~~g~~L~d~~~l~~~~i  137 (230)
                      .|++|+.++..+.   ....++..+.+ ....+..+.||.+||+.|+++..  +| +++|+|+|+|+.|+|+.+|++|||
T Consensus         3 ~s~~~~~~~l~~~p~~pk~~i~~p~~~-~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I   81 (94)
T d1x1ma1           3 LSDWHLAVKLADQPLAPKSILQLPETE-LGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGI   81 (94)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCCS-SCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTC
T ss_pred             cccceEEEEEccCCCCCcceEECCCCc-cCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCC
Confidence            3667787777544   24455444432 22334567899999999999864  44 689999999999999999999999


Q ss_pred             ccCCceEEEEE
Q 026933          138 QKESTLHLVLR  148 (230)
Q Consensus       138 ~~~~~i~l~~~  148 (230)
                      ++|++||++.|
T Consensus        82 ~~gstihLV~r   92 (94)
T d1x1ma1          82 QPGSTVHVLRK   92 (94)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCEEEEEEe
Confidence            99999999875

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=2.2e-13  Score=90.95  Aligned_cols=69  Identities=19%  Similarity=0.272  Sum_probs=60.4

Q ss_pred             EEEEEc---cCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCcc-------cc-CCccccccccccCCeEEEE
Q 026933            2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE-DGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         2 ~v~v~~---~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~-------l~-d~~~l~~~~i~~~~~i~l~   70 (230)
                      .|+|+.   .++++++++|++++||.+||.+|+..+|||++.|+|+|.|+.       |+ |+.+|.+|||.++++|++.
T Consensus        11 ti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~   90 (97)
T d1wjna_          11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEE
Confidence            456654   457889999999999999999999999999999999998863       44 6799999999999999975

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.7e-13  Score=86.03  Aligned_cols=75  Identities=17%  Similarity=0.425  Sum_probs=71.3

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG  227 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~  227 (230)
                      +.+.|++.+|+.+.+.+..++++..|+.+.+++.|++++.++|+|+|..|.++.|++++++++|++|.++.++.|
T Consensus         3 I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            567888889999999999999999999999999999999999999999999999999999999999999998875

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.6e-13  Score=86.11  Aligned_cols=75  Identities=16%  Similarity=0.378  Sum_probs=71.2

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEEEee
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR  150 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~  150 (230)
                      .+.|.|++.+|+.+.+.|..++++..|+..++++.++|++.++|+|+|+.|.++.|++++++.+|++|+++++..
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~   76 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   76 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999998654

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.37  E-value=1.3e-12  Score=85.90  Aligned_cols=70  Identities=16%  Similarity=0.234  Sum_probs=59.5

Q ss_pred             EEEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEecCc-------cccCCccccccccccCCeEEEEE
Q 026933            2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~g~-------~l~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      .++|.+. .+......+++++||.+||.+|+..+|+|++.|+|+|.|+       ..+|+.+|.+||+.++++||+.-
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd   83 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   83 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEe
Confidence            4556543 3455788899999999999999999999999999999875       45678999999999999999863

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.1e-13  Score=88.63  Aligned_cols=83  Identities=28%  Similarity=0.401  Sum_probs=62.5

Q ss_pred             CceEEEEEeecc---eeEEEeeecCceEEEEeeccccHHHHHHHhchhcC--CC-CCceEEEECCeecCCCCcccccCCC
Q 026933          141 STLHLVLRLRGG---MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IP-PDQQRLIFAGKQLEDGRTLADYNIQ  214 (230)
Q Consensus       141 ~~i~l~~~~~~~---~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~g--i~-~~~~~L~~~g~~L~d~~~L~~~~i~  214 (230)
                      +..|+.++...+   ....++.... .....+..+.||.+||++|+++..  .| |+.|+|+|.|+.|+|+.+|++|+|+
T Consensus         4 s~~~~~~~l~~~p~~pk~~i~~p~~-~~~~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~   82 (94)
T d1x1ma1           4 SDWHLAVKLADQPLAPKSILQLPET-ELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ   82 (94)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCC-SSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred             ccceEEEEEccCCCCCcceEECCCC-ccCccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCC
Confidence            456677776544   2334444332 222223457899999999998863  44 6899999999999999999999999


Q ss_pred             CCCEEEEEEE
Q 026933          215 KESTLHLVLR  224 (230)
Q Consensus       215 ~g~~i~l~~~  224 (230)
                      +|++|+|+.|
T Consensus        83 ~gstihLV~r   92 (94)
T d1x1ma1          83 PGSTVHVLRK   92 (94)
T ss_dssp             TTCEEEEEES
T ss_pred             CCCEEEEEEe
Confidence            9999999986

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=8.4e-13  Score=88.07  Aligned_cols=70  Identities=19%  Similarity=0.281  Sum_probs=59.9

Q ss_pred             eeeEEEc---cCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcc-------cC-CCcchhhcccccCCceEE
Q 026933           77 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LE-DGRTLADYNIQKESTLHL  145 (230)
Q Consensus        77 ~~v~v~~---~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~-------L~-d~~~l~~~~i~~~~~i~l  145 (230)
                      ++|.|+.   .+++.+++.++.+.||.+||.+|++.+|+|++.|+|+|.|+.       |+ |+++|.+|||.+|++|+|
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            3455554   346788999999999999999999999999999999998873       43 789999999999999987


Q ss_pred             E
Q 026933          146 V  146 (230)
Q Consensus       146 ~  146 (230)
                      .
T Consensus        90 ~   90 (97)
T d1wjna_          90 R   90 (97)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.24  E-value=1.8e-11  Score=80.22  Aligned_cols=62  Identities=15%  Similarity=0.225  Sum_probs=55.4

Q ss_pred             ceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCe-------ecCCCCcccccCCCCCCEEEEEEE
Q 026933          163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       163 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~-------~L~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      ...+..++++.||.+||.+++..+|+|++.|+|+|.++       ..+|+++|.+|||.+|++|+++=+
T Consensus        16 ~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_          16 FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             cEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            34678889999999999999999999999999998775       457899999999999999999653

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.1e-08  Score=63.71  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=65.1

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~  222 (230)
                      +.+.|+..+|+.+.+.+..+++...|....+++.|++++..+|+|.|..+.+..|.+++++++|++|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            3566777789999999999999999999999999999999999999999999999999999999999874

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.8e-09  Score=64.18  Aligned_cols=70  Identities=16%  Similarity=0.384  Sum_probs=65.9

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEE
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~  146 (230)
                      ++|.|+..+|+.+.+.|..+++...|..+.+++.+++++..+++|+|..+.++.|.+++++.+|+.|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5678888899999999999999999999999999999999999999999999999999999999998764

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.72  E-value=1.4e-08  Score=64.56  Aligned_cols=69  Identities=23%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             EEEEccCCcEEEEEec-CCCcHHHHHHHhhhhhCCCCCceeEEecC--------------ccccC-CccccccccccCCe
Q 026933            3 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG--------------KQLED-GRTLADYNIQKEST   66 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~-~~~tv~~lK~~i~~~~gip~~~q~l~~~g--------------~~l~d-~~~l~~~~i~~~~~   66 (230)
                      |.|++.+| +..++|+ ++.||.+||.+|++..+||.+.|.|..+-              ..+.| ..+|+++||..|+.
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            66777766 4557774 57899999999999999999999997652              12344 46799999999999


Q ss_pred             EEEEEE
Q 026933           67 LHLVLR   72 (230)
Q Consensus        67 i~l~~~   72 (230)
                      +++...
T Consensus        82 vyL~y~   87 (94)
T d1wf9a1          82 VYLAYE   87 (94)
T ss_dssp             EECCCS
T ss_pred             EEEEee
Confidence            988644

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.67  E-value=1.2e-08  Score=64.88  Aligned_cols=68  Identities=22%  Similarity=0.286  Sum_probs=54.6

Q ss_pred             EEEeeecCceEEEEeec-cccHHHHHHHhchhcCCCCCceEEEEC--------------Ceec-CCCCcccccCCCCCCE
Q 026933          155 IFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFA--------------GKQL-EDGRTLADYNIQKEST  218 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~~~L~~~--------------g~~L-~d~~~L~~~~i~~g~~  218 (230)
                      +.+++.+| +..++++. +.|+.+||.+|++.+++|.+.|.|.-+              -..| +|..+|+++||.+|+.
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            45666666 56788864 679999999999999999999999543              2235 4667899999999999


Q ss_pred             EEEEE
Q 026933          219 LHLVL  223 (230)
Q Consensus       219 i~l~~  223 (230)
                      |++..
T Consensus        82 vyL~y   86 (94)
T d1wf9a1          82 VYLAY   86 (94)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            99864

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=8.3e-07  Score=54.53  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=64.4

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  223 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~  223 (230)
                      +.|-..+|+..++.+.|++|+.++-+..+++.|+.++++.|.|+++.++-+.+++-.|+.+|+.+.|+-
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            455677899999999999999999999999999999999999999999999999999999999999864

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=3.4e-06  Score=51.70  Aligned_cols=69  Identities=19%  Similarity=0.224  Sum_probs=64.8

Q ss_pred             eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecCcccCCCcchhhcccccCCceEEEE
Q 026933           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      |.|-..+|+...+.+.|++|+.++-+..++++|+.+++..|.|+++.++-+.++.-.|+.+|+.+.++.
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            566688999999999999999999999999999999999999999999999999999999999998763

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00025  Score=44.43  Aligned_cols=69  Identities=20%  Similarity=0.380  Sum_probs=58.8

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  222 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~  222 (230)
                      ..+.++.++|+.+.-.+..++|+++|..-|... +.++..+.|+  |..+.+   ++++||.+.|+.+.+++++-
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            457888999999999999999999999999875 7788888888  566777   45789999999999998764

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00045  Score=43.20  Aligned_cols=70  Identities=20%  Similarity=0.359  Sum_probs=58.1

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCccc---CCCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L---~d~~~l~~~~i~~~~~i~l~  146 (230)
                      ..+|.|+.++|..+.-.+..++|+.++..-+... +.++....|.  |..+.+   +.+.||++.|+.+.+++++-
T Consensus         5 ~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           5 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            3568889999999999999999999999999874 7777888887  456666   34789999999998887664

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.001  Score=42.21  Aligned_cols=65  Identities=18%  Similarity=0.346  Sum_probs=53.0

Q ss_pred             eEEEeeecCceEEEEeeccccHHHHHHHhchhc-CCCCCceEEEE--CCeec-CCCCcccccCCCCCCEE
Q 026933          154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQL-EDGRTLADYNIQKESTL  219 (230)
Q Consensus       154 ~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~-gi~~~~~~L~~--~g~~L-~d~~~L~~~~i~~g~~i  219 (230)
                      .+.++.++|+.+...+..++||.++..-+.... +.+...+.|+.  ..+.+ +++.||.++|+.+. .|
T Consensus        16 ~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s-~v   84 (89)
T d1i42a_          16 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA-VI   84 (89)
T ss_dssp             EEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS-EE
T ss_pred             EEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc-eE
Confidence            567888899999999999999999999998754 56677788884  45667 67899999999964 44

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.99  E-value=0.00077  Score=42.80  Aligned_cols=64  Identities=19%  Similarity=0.333  Sum_probs=52.7

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHh-CCCCCCeEEEe--cCccc-CCCcchhhcccccC
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF--AGKQL-EDGRTLADYNIQKE  140 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~--~g~~L-~d~~~l~~~~i~~~  140 (230)
                      ..|.|+.++|..+...+..++||.++...+.... +.+.....|..  ..+.+ +++.||.+.|+.+.
T Consensus        15 t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s   82 (89)
T d1i42a_          15 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA   82 (89)
T ss_dssp             EEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS
T ss_pred             EEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc
Confidence            4677889999999999999999999999998764 56777788884  45667 45789999999864

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0023  Score=43.12  Aligned_cols=69  Identities=17%  Similarity=0.308  Sum_probs=54.4

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCccc---cCCccccccccccCCeEEEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l---~d~~~l~~~~i~~~~~i~l~~   71 (230)
                      +|.|+..+|..+......++||.+|...|.... .+...-.|+  |-.+.|   +.+.||.+.|+.+..+|++--
T Consensus        45 ~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~~-~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee  118 (124)
T d1wj4a_          45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSKG-YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             EEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcc-cCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEe
Confidence            578999999999999999999999999998764 444444444  445666   346899999999999887653

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0027  Score=40.69  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=55.2

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE--ecCcccC--CCcchhhcccccCCceEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLV  146 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d~~~l~~~~i~~~~~i~l~  146 (230)
                      ..+|.|+..+|+.+.-.+..++||.+|..-+... +.......|+  |-.+.+.  .+.||.++|+.+.+++.|.
T Consensus        16 ~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~   89 (96)
T d2cr5a1          16 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE   89 (96)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEe
Confidence            3578888999999999999999999999998665 4556677777  4445553  4689999999988877654

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0028  Score=42.72  Aligned_cols=71  Identities=18%  Similarity=0.330  Sum_probs=57.8

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEE--ECCeec---CCCCcccccCCCCCCEEEEEEE
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVLR  224 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~--~~g~~L---~d~~~L~~~~i~~g~~i~l~~~  224 (230)
                      ..|.+|.++|+.+...+..++|+.+|..-|... +.+...+.|+  |-.+.+   +.+++|.+.|+.+..+|+|--.
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee~  119 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES  119 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEec
Confidence            357788889999999999999999999999775 5677788887  555666   4578999999999999876543

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.0031  Score=40.40  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             EEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE--ecCcccc--CCccccccccccCCeEEEEE
Q 026933            2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL   71 (230)
Q Consensus         2 ~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~--~~g~~l~--d~~~l~~~~i~~~~~i~l~~   71 (230)
                      +|.|+..+|..+.-....++||.+|...|..... ....-.|+  |-.+.+.  .+.||.+.|+.+...+.+.-
T Consensus        18 ~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~~-~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          18 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY-HKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             EEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC-CTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCcccHHHHHHHHHHhcc-CcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            6889999999999999999999999999977644 33343444  3345553  36899999999888876643

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.97  E-value=0.062  Score=33.23  Aligned_cols=65  Identities=11%  Similarity=0.233  Sum_probs=45.6

Q ss_pred             CEEEEEccC------C-cEEEEEecCCCcHHHHHHHhhhhhCCC-----------CCceeEEecCccccCCccccccccc
Q 026933            1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEGIP-----------PDQQRLIFAGKQLEDGRTLADYNIQ   62 (230)
Q Consensus         1 m~v~v~~~~------g-~~~~~~v~~~~tv~~lK~~i~~~~gip-----------~~~q~l~~~g~~l~d~~~l~~~~i~   62 (230)
                      |+|+|+..+      | ....++++.+.||.+|.+.+.+.++--           ...-++..||+..++     ++-+.
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCcC
Confidence            889999765      4 577899999999999999998876421           112234456665544     34567


Q ss_pred             cCCeEEEE
Q 026933           63 KESTLHLV   70 (230)
Q Consensus        63 ~~~~i~l~   70 (230)
                      +++.+.+.
T Consensus        77 ~gDevai~   84 (88)
T d1vjka_          77 DGDVVGVF   84 (88)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEe
Confidence            78887765

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.13  Score=31.56  Aligned_cols=72  Identities=15%  Similarity=0.247  Sum_probs=54.7

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCce-EEEECC-----eecCCCCcccccCCCCCCEEEEEEEe
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAG-----KQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~-~L~~~g-----~~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      +++.|...++ +++++++..++..+|-.+|++..|+....+ =|.|.+     .=|+.++.|..+..+.+....+.++.
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~V   79 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEEE
Confidence            4567777776 589999999999999999999999876554 344432     23788899999877777766666554

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.35  Score=29.51  Aligned_cols=69  Identities=14%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC-ceeEEecCcc-----ccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQ-----LEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~-~q~l~~~g~~-----l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      |+|.|.++++ ++.+.+++.++..+|=.+|.+..|+... .=-|.|.+..     |+.++.|..+....+..+.+.
T Consensus         2 ~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~   76 (84)
T d1ef1a3           2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFK   76 (84)
T ss_dssp             EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEE
T ss_pred             EEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEE
Confidence            6899999997 5899999999999999999999998743 3445554322     677788887766555544443

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.33  E-value=0.37  Score=29.43  Aligned_cols=65  Identities=8%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             eeeEEEccC-------CcEEeeccCccCcHHHHHHHHhhHhCC-----------CCCCeEEEecCcccCCCcchhhcccc
Q 026933           77 MQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQ  138 (230)
Q Consensus        77 ~~v~v~~~~-------g~~~~~~v~~~~tV~~lK~~i~~~~~i-----------~~~~q~L~~~g~~L~d~~~l~~~~i~  138 (230)
                      |+|.|+...       .....++++...||.+|.+.+.++++-           .....++..||+...++     +-++
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d-----~~L~   76 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWD-----EELK   76 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTT-----CBCC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCC-----cCcC
Confidence            667776542       356788889999999999999887641           12345666777776554     4577


Q ss_pred             cCCceEEE
Q 026933          139 KESTLHLV  146 (230)
Q Consensus       139 ~~~~i~l~  146 (230)
                      +|+.|.++
T Consensus        77 ~gDevai~   84 (88)
T d1vjka_          77 DGDVVGVF   84 (88)
T ss_dssp             TTCEEEEE
T ss_pred             CCCEEEEe
Confidence            88888665

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.73  Score=27.98  Aligned_cols=72  Identities=11%  Similarity=0.135  Sum_probs=54.5

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceE-EEE--CC--eecCCCCcccccCCCCCCEEEEEEEe
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIF--AG--KQLEDGRTLADYNIQKESTLHLVLRL  225 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~-L~~--~g--~~L~d~~~L~~~~i~~g~~i~l~~~~  225 (230)
                      +.+.|...+++ .+++++..++..+|-.+|++..|+....+. |.|  .|  .=|+.+++|..+.++.+..+.+.++.
T Consensus         3 ~~v~V~lLD~~-le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~~F~V   79 (84)
T d1h4ra3           3 FTVRIVTMDAE-MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA   79 (84)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred             EEEEEEEcCCc-EEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEEEEEE
Confidence            34667777764 799999999999999999999998765543 333  33  23678899999888888877776654

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.6  Score=26.82  Aligned_cols=58  Identities=12%  Similarity=0.182  Sum_probs=43.8

Q ss_pred             EEEeeccccHHHHHHHhchhcCCCCCceEEEECCeecCCCCcccccCCCCCCEEEEEEEecCC
Q 026933          166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG  228 (230)
Q Consensus       166 ~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~~g~~L~d~~~L~~~~i~~g~~i~l~~~~~~g  228 (230)
                      +.++++..|+.+|-+.    .++++....+-.++.... .....+.-+++||.|.++--..||
T Consensus         8 ~~~~~~~~tl~~ll~~----l~~~~~~vaV~vN~~ivp-k~~~~~~~L~~gD~ieIv~~v~GG   65 (65)
T d1zud21           8 AMQCAAGQTVHELLEQ----LDQRQAGAALAINQQIVP-REQWAQHIVQDGDQILLFQVIAGG   65 (65)
T ss_dssp             EECCCTTCBHHHHHHH----HTCCCTTEEEEETTEECC-GGGTTTCBCCTTCEEEEEECCCCC
T ss_pred             EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCEEcC-HHHHhhccCCCCCEEEEEEEecCC
Confidence            4556777899988754    478888888889998876 345678889999999887754444

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.68  E-value=0.3  Score=29.50  Aligned_cols=46  Identities=13%  Similarity=0.209  Sum_probs=39.8

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~   46 (230)
                      |..+||.-=--|+.+++.++.+..+|...|.+++..|++.-.|.|.
T Consensus         4 ~~~~vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           4 MAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             CCEEEEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            3445655545789999999999999999999999999999999995

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.21  Score=30.26  Aligned_cols=44  Identities=11%  Similarity=0.187  Sum_probs=37.4

Q ss_pred             eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEec
Q 026933           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA  122 (230)
Q Consensus        79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~  122 (230)
                      ..|+..-.-++.+.+.+....++|.++|+++...+++..+|.|.
T Consensus         6 ~~vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           6 YTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             EEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             EEEEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            34444444678889999999999999999999999999999996

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.36  Score=29.22  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=36.7

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCC
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD   39 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~   39 (230)
                      |+..|..++|..+.+.+++.++-.+|=.+|.+..|+...
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E~   39 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEE   39 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCSC
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCccc
Confidence            788999999999999999999999999999999998854

>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Rap guanine nucleotide exchange factor 5, RapGEF5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=0.75  Score=29.03  Aligned_cols=72  Identities=10%  Similarity=0.195  Sum_probs=49.3

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEE---ecCcc--cCCCcchhhcccccCCceEEEE
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVL  147 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~--L~d~~~l~~~~i~~~~~i~l~~  147 (230)
                      .+...|...+....++.++.+.|+.++++.++++.+.+.++..|.   .+|..  |+++..--.-.+.-++.+++..
T Consensus         9 ei~~~VY~~Dhsy~tlr~~v~~sa~eI~~~vaeKl~~~~e~L~LV~V~SsGEr~~lkp~d~sV~TsL~lN~rLFvc~   85 (104)
T d1wgya_           9 EIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYR   85 (104)
T ss_dssp             CCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEE
T ss_pred             eEEEEEEecCCcEEEEEeeccCcHHHHHHHHHHHhCCCCCceEEEEEccCCcEEeeCccceeEEeeeeecceEEEec
Confidence            445556667777889999999999999999999999998887776   56633  3433222122344555555443

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.30  E-value=0.7  Score=28.12  Aligned_cols=42  Identities=14%  Similarity=0.164  Sum_probs=33.6

Q ss_pred             EEEEcc-CCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEec
Q 026933            3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA   46 (230)
Q Consensus         3 v~v~~~-~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~~   46 (230)
                      |.||.. ++..+.+.++++.|..+|+++|...+++..  -+|.|.
T Consensus        13 ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~~~--~~lkY~   55 (85)
T d1ip9a_          13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDN--FKLQTK   55 (85)
T ss_dssp             EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSC--EEEEEC
T ss_pred             EEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCCCc--eEEEEE
Confidence            456654 788999999999999999999999997643  455554

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.58  E-value=0.34  Score=30.62  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             CCeeeEEEccCC--------cEEeeccC---ccCcHHHHHHHHhhHhCCCCCC-----------eEEEecCcccCCCcch
Q 026933           75 GGMQIFVKTLTG--------KTITLEVE---SSDTIDNVKAKIQDKEGIPPDQ-----------QRLIFAGKQLEDGRTL  132 (230)
Q Consensus        75 ~~~~v~v~~~~g--------~~~~~~v~---~~~tV~~lK~~i~~~~~i~~~~-----------q~L~~~g~~L~d~~~l  132 (230)
                      .+|.|+|+...|        +...++++   ...||.+|-..+.+++.-...+           ..+..+|+..+   .+
T Consensus         3 ~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~---~l   79 (101)
T d1xo3a_           3 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LL   79 (101)
T ss_dssp             SSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHH---HH
T ss_pred             CCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCccee---cc
Confidence            456777776442        33455554   3469999999999987532111           23334443321   11


Q ss_pred             --hhcccccCCceEEEEEeecc
Q 026933          133 --ADYNIQKESTLHLVLRLRGG  152 (230)
Q Consensus       133 --~~~~i~~~~~i~l~~~~~~~  152 (230)
                        .++.+++|+.|.++....||
T Consensus        80 ~gl~t~l~dgDeV~~~p~v~GG  101 (101)
T d1xo3a_          80 GELDYQLQDQDSILFISTLHGG  101 (101)
T ss_dssp             TTTSCCCCTTCEEEEEETTCCC
T ss_pred             CCCccCcCCCCEEEEeCCCCCC
Confidence              25678999999887655443

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.63  E-value=2.1  Score=25.76  Aligned_cols=69  Identities=12%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             CEEEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCc-eeEEec--C--ccccCCccccccccccCCeEEEE
Q 026933            1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA--G--KQLEDGRTLADYNIQKESTLHLV   70 (230)
Q Consensus         1 m~v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~-q~l~~~--g--~~l~d~~~l~~~~i~~~~~i~l~   70 (230)
                      +.|.|..++|. ..+.+.+.++-.+|=.+|.+..|+...+ =-|.|-  |  .=|+.++.|..+.++.++.+.+.
T Consensus         3 ~~v~V~lLD~~-le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~~   76 (84)
T d1h4ra3           3 FTVRIVTMDAE-MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFH   76 (84)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEE
T ss_pred             EEEEEEEcCCc-EEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEEE
Confidence            46889999985 7999999999999999999999987533 334442  2  12566788887766665554443

>d1wgya_ d.15.1.5 (A:) Rap guanine nucleotide exchange factor 5, RapGEF5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Rap guanine nucleotide exchange factor 5, RapGEF5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=1.9  Score=27.04  Aligned_cols=67  Identities=9%  Similarity=0.205  Sum_probs=48.4

Q ss_pred             ccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEE---ecC--ccccCCccccccccccCCeEEEEEEe
Q 026933            7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAG--KQLEDGRTLADYNIQKESTLHLVLRL   73 (230)
Q Consensus         7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~---~~g--~~l~d~~~l~~~~i~~~~~i~l~~~~   73 (230)
                      ..+..-.++.++.++|+.++++.+.++.+.+.+...|.   .+|  ..|+++..--.-.+.-++++++..+.
T Consensus        16 ~~Dhsy~tlr~~v~~sa~eI~~~vaeKl~~~~e~L~LV~V~SsGEr~~lkp~d~sV~TsL~lN~rLFvc~~d   87 (104)
T d1wgya_          16 ITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD   87 (104)
T ss_dssp             CSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred             ecCCcEEEEEeeccCcHHHHHHHHHHHhCCCCCceEEEEEccCCcEEeeCccceeEEeeeeecceEEEechh
Confidence            45566788999999999999999999999998887777   345  33444433333446666777776554

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.87  E-value=1.1  Score=26.34  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=38.1

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF   45 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~   45 (230)
                      +.|-.++|.+-.+.+.|+.||.++=.++.++.|++++.=..+.
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~   45 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR   45 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            4566788999999999999999999999999999998877664

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.44  E-value=1.4  Score=25.94  Aligned_cols=43  Identities=12%  Similarity=0.047  Sum_probs=38.4

Q ss_pred             eEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEe
Q 026933           79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  121 (230)
Q Consensus        79 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~  121 (230)
                      +.|..++|+.-.+.+.+..|+.++-.++.++.|++++...++.
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~   45 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR   45 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            5566789999899999999999999999999999999888864

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.68  E-value=1.1  Score=26.61  Aligned_cols=43  Identities=14%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             EEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCCceEEEE
Q 026933          155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF  197 (230)
Q Consensus       155 i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~~~L~~  197 (230)
                      +.+..++|+.-.+.+.+..|+.++-.++.++-|+.++.+.++.
T Consensus         4 iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~   46 (77)
T d1c1yb_           4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFR   46 (77)
T ss_dssp             EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             EEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            5566788999999999999999999999999999999888764

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.37  E-value=1.6  Score=25.87  Aligned_cols=43  Identities=14%  Similarity=0.157  Sum_probs=38.1

Q ss_pred             EEEEccCCcEEEEEecCCCcHHHHHHHhhhhhCCCCCceeEEe
Q 026933            3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF   45 (230)
Q Consensus         3 v~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~l~~   45 (230)
                      |.|-.++|.+-.+++.|+.||.++=.+..++.|++++.=..+.
T Consensus         4 iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~~   46 (77)
T d1c1yb_           4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFR   46 (77)
T ss_dssp             EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             EEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            4566678999999999999999999999999999998877764

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.85  E-value=1.8  Score=26.98  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=42.4

Q ss_pred             CEEEEEccCC--------cEEEEEec---CCCcHHHHHHHhhhhhCCCCCceeEEecCcccc-------CCcc---c--c
Q 026933            1 MQIFVKTLTG--------KTITLEVE---SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-------DGRT---L--A   57 (230)
Q Consensus         1 m~v~v~~~~g--------~~~~~~v~---~~~tv~~lK~~i~~~~gip~~~q~l~~~g~~l~-------d~~~---l--~   57 (230)
                      |+|+|+-.+|        +...+++.   ...||.+|-..+.+.+.-+.  ..++..+..+.       ++..   +  .
T Consensus         5 m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~--~~l~~~~~~lr~~v~v~vN~~di~~l~gl   82 (101)
T d1xo3a_           5 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKER--PELFIQGDSVRPGILVLINDADWELLGEL   82 (101)
T ss_dssp             CEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSC--GGGSCCTTSCCSSEEEEETTEEHHHHTTT
T ss_pred             eEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcch--hhhhccCcCeeeeEEEEEcCcceeccCCC
Confidence            7899987653        34456664   35799999999988875442  22322221111       1111   1  2


Q ss_pred             ccccccCCeEEEEEEe
Q 026933           58 DYNIQKESTLHLVLRL   73 (230)
Q Consensus        58 ~~~i~~~~~i~l~~~~   73 (230)
                      ++.+++++.+.++...
T Consensus        83 ~t~l~dgDeV~~~p~v   98 (101)
T d1xo3a_          83 DYQLQDQDSILFISTL   98 (101)
T ss_dssp             SCCCCTTCEEEEEETT
T ss_pred             ccCcCCCCEEEEeCCC
Confidence            5678888888876543

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=1  Score=28.24  Aligned_cols=54  Identities=20%  Similarity=0.225  Sum_probs=39.4

Q ss_pred             eeEEEeeecCceEEEEeeccccHHHHHHHhchhcCCCCC-ceEEE--EC--C--eecCCCC
Q 026933          153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA--G--KQLEDGR  206 (230)
Q Consensus       153 ~~i~v~~~~~~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~~~L~--~~--g--~~L~d~~  206 (230)
                      ..+.|...+|.+..+.|++++|+.++-+.+.++.+++.+ .+.|+  +.  +  +.|.|..
T Consensus        10 ~vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~~f~L~E~~~~~~leR~L~d~E   70 (100)
T d1wgra_          10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHE   70 (100)
T ss_dssp             EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSS
T ss_pred             eEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCCCeEEEEecCCCcceeecCchH
Confidence            345566678889999999999999999999999987554 34444  22  2  5565554

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.29  E-value=2.2  Score=25.72  Aligned_cols=44  Identities=14%  Similarity=0.131  Sum_probs=33.7

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCCeEEEecC
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG  123 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g  123 (230)
                      ++|.+. .++..+.+.++++.+..+|+++|+++++..  ..+|.|..
T Consensus        13 ikVKv~-~~~D~~~~~l~~~it~~dL~~kI~~rf~~~--~~~lkY~D   56 (85)
T d1ip9a_          13 TKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKL   56 (85)
T ss_dssp             EEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECC
T ss_pred             EEEEEE-ECCcEEEEEeCCCCCHHHHHHHHHHHhCCC--ceEEEEEc
Confidence            344442 356778899999999999999999999754  57777764

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.15  E-value=1.2  Score=27.87  Aligned_cols=41  Identities=17%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             CeeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCC
Q 026933           76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ  116 (230)
Q Consensus        76 ~~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~  116 (230)
                      +..|.|...+|....+.|++++|+.++-..+.++.+++.+.
T Consensus         9 ~~vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~~   49 (100)
T d1wgra_           9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE   49 (100)
T ss_dssp             CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCCC
Confidence            34566667889999999999999999999999999875543

>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=1.8  Score=25.88  Aligned_cols=59  Identities=12%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             eeeEEEccCCcEEeeccCccCcHHHHHHHHhhHhCCCCCC-eEEEec---C--cccCCCcchhhc
Q 026933           77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADY  135 (230)
Q Consensus        77 ~~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~---g--~~L~d~~~l~~~  135 (230)
                      |...|..++|..+.+.++..++..+|=.++++..++.... .-|.|-   |  .-|+.++++...
T Consensus         1 ~~C~V~lLD~~~~~~~v~~~~~G~~l~~~Vc~~l~l~E~~YFGL~y~d~~~~~~WLd~~K~i~kq   65 (81)
T d1gg3a3           1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQ   65 (81)
T ss_dssp             CEEEEECTTSCEEEEECCTTCCHHHHHHHHHHHHTTCSCCSSSCEEECCSSSCCBCCTTSCHHHH
T ss_pred             CEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCcccccceEEEECCCCceEecccccchhhh
Confidence            4567888999999999999999999999999999976443 344433   2  235667777665